Citrus Sinensis ID: 016424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQEKFHRLSFFSLESPSPVISKP
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccccHHHHHHccccccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHHcccccccccEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccc
Coil and Loop (DISEMBL)
MEFSSEANQRIARISahlyppnlqnscLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYdvvntpgvtadishmdtgavvrgflgqpqlenaltgmdlviipagvprkpgmtrddlfnINAGIVRTLCEGIakccpnatvnlisnpvnstvPIAAEVFkkagtydpkkllGVTMLDVVRANTFVAEVlgldprdvdvpvvgghagvtilpllsqvkppcsftqEETEYLTNRIQNGGTEVVeakagagsaTLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEifqlgplneyesGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQEKfhrlsffslespspviskp
Flexible Loop (DISEMBL)
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpVVGGHAGVTilpllsqvkpPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQEKFHRlsffslespspviskp
Low Complexity Region (SEG)
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpvvggHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQEKFHRLSFFSLESPSPVISKP
Disordered region (IsUnstruct)
************RISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLL******C**KFHRLSFF************
Disordered Region (DISOPRED)
*******************************************VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKH****************FHRLSFFSLESPSP*****
Disordered Region (DISEMBL)
*********RIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQEKFHRLSFFSLE*********
Disordered Region (DISPRO)
************************************GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQEKFHRLSFFSLESP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQEKFHRLSFFSLESPSPVISKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.905	0.991	0.832	1e-170
P46488	356	Malate dehydrogenase, gly	N/A	no	0.897	0.983	0.834	1e-169
O82399	354	Probable malate dehydroge	yes	no	0.830	0.915	0.860	1e-163
P37228	353	Malate dehydrogenase, gly	yes	no	0.843	0.932	0.841	1e-163
Q42972	356	Malate dehydrogenase, gly	yes	no	0.843	0.924	0.855	1e-162
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.843	0.929	0.857	1e-158
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.843	0.918	0.844	1e-155
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.843	0.918	0.844	1e-155
P17783	347	Malate dehydrogenase, mit	N/A	no	0.735	0.827	0.682	1e-110
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.735	0.841	0.679	1e-110

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  597 bits (1540), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/359 (83%), Positives = 318/359 (88%), Gaps = 6/359 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+   + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHS 356
           QVTELPFFASKVRLGR G EE++ LGPLNEYE      L    ++  G  E+ VS+  S
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYER---IGLEKAKKELAGSIEKGVSFIRS 356

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  593 bits (1530), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 297/356 (83%), Positives = 317/356 (89%), Gaps = 6/356 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+   + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKYQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSW 353
           QVTELPFFA+KVRLGR G +E++ LGPLNEYE      L    ++  G  E+ VS+
Sbjct: 301 QVTELPFFATKVRLGRNGIDEVYSLGPLNEYER---IGLEKAKKELAGSIEKGVSF 353

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  576 bits (1484), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/329 (86%), Positives = 301/329 (91%), Gaps = 5/329 (1%)

Query: 6   EANQRIARISAHLYPPNLQN-----SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
           + NQRIARISAHL PPNL N     S L +  CRAKGG+ GFKVAILGAAGGIGQPLAML
Sbjct: 2   DPNQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAML 61

Query: 61  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
           MK+NPLVSVLHLYDV N PGVTADISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query: 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
           RKPGMTRDDLFNINAGIVRTL E IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DP
Sbjct: 122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
           KKL+GVTMLDVVRANTFVAEV+ LDPR+V+VPVVGGHAGVTILPLLSQVKPPCSFTQ+E 
Sbjct: 182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEI 241

Query: 241 EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT 300
           EYLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV+FADACLRGLRGDA +VECA+VAS VT
Sbjct: 242 EYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVT 301

Query: 301 ELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           ELPFFASKVRLGR G +E++ LGPLNEYE
Sbjct: 302 ELPFFASKVRLGRCGIDEVYGLGPLNEYE 330

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  574 bits (1480), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/329 (84%), Positives = 302/329 (91%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
           ME +S A+ RI+RI+ HL P    + CL+++ CRAKGG +GFKVAILGAAGGIGQPLAML
Sbjct: 1   MEANSGASDRISRIAGHLRPQREDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLAML 60

Query: 61  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
           MK+NPLVS+LHLYDVVNTPGVT+DISHMDTGAVVRGFLGQ QLE+AL GMDLVIIPAGVP
Sbjct: 61  MKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVP 120

Query: 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
           RKPGMTRDDLFNINAGIV+TLCE IAKCCP A VN+ISNPVNSTVPIAAEVFK+AGTYDP
Sbjct: 121 RKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGTYDP 180

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
           K+LLGVTMLDVVRANTFVAEVLG+DPRDVDVPVVGGHAG+TILPLLSQ+KPPCSFT +E 
Sbjct: 181 KRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTPKEI 240

Query: 241 EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT 300
           EYLT RIQNGG EVVEAKAGAGSATLSMAYAAVKFADACL  LRGDAG++ECA+VASQVT
Sbjct: 241 EYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVASQVT 300

Query: 301 ELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           ELPFFASKVRLGR G EEI  LGPLN+YE
Sbjct: 301 ELPFFASKVRLGRVGVEEILPLGPLNDYE 329

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  571 bits (1471), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 284/332 (85%), Positives = 304/332 (91%), Gaps = 3/332 (0%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           ME ++ A +R+ R+++HL PP  Q   +  LR + CRAKG A GFKVAILGA+GGIGQPL
Sbjct: 1   MEDAAAAARRMERLASHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           A+LMK+NPLVSVLHLYDVVNTPGVTADISHM+TGAVVRGFLGQPQLENALTGMDLVIIPA
Sbjct: 61  ALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA VN+ISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVT LDVVRANTFVAEVLGLDPRDV+VPV+GGHAGVTILPLLSQV PPCSFT 
Sbjct: 181 YDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTS 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EE  YLT RIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDAG+VEC+FVAS
Sbjct: 241 EEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVAS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           QVTELPFFASKVRLGR G EEI  LGPLNE+E
Sbjct: 301 QVTELPFFASKVRLGRCGIEEILSLGPLNEFE 332

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  557 bits (1435), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/330 (85%), Positives = 302/330 (91%), Gaps = 1/330 (0%)

Query: 1   MEFSSEANQRIARISAHLYPP-NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
           MEF  +ANQRIARISAHL P    +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++
Sbjct: 1   MEFRGDANQRIARISAHLTPQMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSL 60

Query: 60  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
           LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+
Sbjct: 61  LMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGI 120

Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
           PRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 239
           PKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT +E
Sbjct: 181 PKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQE 240

Query: 240 TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 299
            EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA VVEC+FVASQV
Sbjct: 241 IEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQV 300

Query: 300 TELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           TEL FFA+KVRLGR GAEE++QLGPLNEYE
Sbjct: 301 TELAFFATKVRLGRTGAEEVYQLGPLNEYE 330

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  550 bits (1416), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/334 (84%), Positives = 301/334 (90%), Gaps = 5/334 (1%)

Query: 1   MEFSSEANQRIARISAHLYP---PNLQ--NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQ 55
           MEF  +AN+RIA ISAHL P   P ++  NS + +  CRAKGG  GFKVAILGAAGGIGQ
Sbjct: 1   MEFRGDANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQ 60

Query: 56  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115
            L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVII
Sbjct: 61  SLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVII 120

Query: 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 175
           PAGVPRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTV IAAEVFKKA
Sbjct: 121 PAGVPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKA 180

Query: 176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSF 235
           GTYDPKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SF
Sbjct: 181 GTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSF 240

Query: 236 TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV 295
           T  E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA V+EC+FV
Sbjct: 241 TPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFV 300

Query: 296 ASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           ASQVTEL FFA+KVRLGR GAEE+FQLGPLNEYE
Sbjct: 301 ASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYE 334

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  547 bits (1409), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/334 (84%), Positives = 299/334 (89%), Gaps = 5/334 (1%)

Query: 1   MEFSSEANQRIARISAHLYP---PNLQ--NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQ 55
           MEF  +A +RIA ISAHL P   P ++  NS +    CRAKGG  GFKVAILGAAGGIGQ
Sbjct: 1   MEFRGDAYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQ 60

Query: 56  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115
            L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVII
Sbjct: 61  SLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVII 120

Query: 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 175
           PAGVPRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTV IAAEVFKKA
Sbjct: 121 PAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKA 180

Query: 176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSF 235
           GTYDPKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SF
Sbjct: 181 GTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSF 240

Query: 236 TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV 295
           T  E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA V+EC+FV
Sbjct: 241 TPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFV 300

Query: 296 ASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           ASQVTEL FFA+KVRLGR GAEE+FQLGPLNEYE
Sbjct: 301 ASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYE 334

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/287 (68%), Positives = 229/287 (79%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G+ Q
Sbjct: 36  KVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQ 95

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++LC  IAK CPNA +N+ISNPVN
Sbjct: 96  LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISNPVN 155

Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
           STVPIAAEVFKKAGTYD KKL GVT LDVVRA TF A    +   +V+VPV+GGHAG+TI
Sbjct: 156 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITI 215

Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
           LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+G
Sbjct: 216 LPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKG 275

Query: 283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           L G   VVEC+FV S VTELPFFASKV+LG+ G E +  LGPL+++E
Sbjct: 276 LNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFE 322

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  400 bits (1027), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/287 (67%), Positives = 227/287 (79%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   
Sbjct: 31  KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDN 90

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK CP+A +N+ISNPVN
Sbjct: 91  LAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVN 150

Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
           STVPIAAE+FKKAG YD KKL GVT LDVVRA TF A    +   +V+VPV+GGHAGVTI
Sbjct: 151 STVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVIGGHAGVTI 210

Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
           LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+G
Sbjct: 211 LPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKG 270

Query: 283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           L G   V+EC++V S +TELPFFASKVRLG+ G EE+  LGPL+++E
Sbjct: 271 LNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFE 317

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	0.843	0.924	0.912	1e-174
255562058	356	malate dehydrogenase, putative [Ricinus	0.843	0.924	0.900	1e-173
118489009	354	unknown [Populus trichocarpa x Populus d	0.838	0.923	0.896	1e-170
224056321	356	predicted protein [Populus trichocarpa]	0.843	0.924	0.900	1e-169
224103817	354	predicted protein [Populus trichocarpa]	0.838	0.923	0.890	1e-169
158712040	354	malate dehydrogenase [Perilla frutescens	0.830	0.915	0.896	1e-168
60593475	362	Chain A, Mature And Translocatable Forms	0.905	0.975	0.832	1e-168
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.905	0.991	0.832	1e-168
359496625	356	PREDICTED: malate dehydrogenase, glyoxys	0.843	0.924	0.885	1e-167
350536711	357	glyoxisomal malate dehydrogenase [Solanu	0.833	0.910	0.893	1e-167

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 303/332 (91%), Positives = 317/332 (95%), Gaps = 3/332 (0%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+ ++EANQRIAR+SAHLYP   Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPTAEANQRIARLSAHLYPSVRQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGH+GVTILPLLSQVKPPCSFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTP 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EET+YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVEC FVAS
Sbjct: 241 EETQYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECTFVAS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           QVTELPFFA+KVRLGR GAEEI+QLGPLNEYE
Sbjct: 301 QVTELPFFATKVRLGRSGAEEIYQLGPLNEYE 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/332 (90%), Positives = 317/332 (95%), Gaps = 3/332 (0%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+ S+EA QRIARISAHL+PPN Q   +S L++A CRAKGG+ GFKVAILGAAGGIGQPL
Sbjct: 1   MDSSAEAAQRIARISAHLHPPNFQMEGSSALKRADCRAKGGSPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPPCSFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTS 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EETEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAG+VEC+FVAS
Sbjct: 241 EETEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGIVECSFVAS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           QVTELPFFA+KVRLGR GAEE++QLGPLNEYE
Sbjct: 301 QVTELPFFATKVRLGRNGAEEVYQLGPLNEYE 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 296/330 (89%), Positives = 312/330 (94%), Gaps = 3/330 (0%)

Query: 3   FSSEANQRIARISAHLYPPN--LQNSC-LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
             S ANQRIAR+SAHL PPN  ++ SC L++  CRAKGGA GFKVAILGAAGGIGQPLAM
Sbjct: 1   MESVANQRIARVSAHLQPPNSQMEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAM 60

Query: 60  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
           LMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV
Sbjct: 61  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 120

Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
           PRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 239
           PK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EE
Sbjct: 181 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEE 240

Query: 240 TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 299
           TEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS+V
Sbjct: 241 TEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASEV 300

Query: 300 TELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           TELPFFA+KVRLGR+GAEE++QLGPLNEYE
Sbjct: 301 TELPFFATKVRLGRRGAEEVYQLGPLNEYE 330

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056321|ref|XP_002298801.1| predicted protein [Populus trichocarpa] gi|222846059|gb|EEE83606.1| predicted protein [Populus trichocarpa]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/332 (90%), Positives = 313/332 (94%), Gaps = 3/332 (0%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQN--SC-LRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           ME   EA+QRIARISAHL PPN Q   SC L++A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MESIREASQRIARISAHLQPPNSQTEESCVLKRADCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NP VSVLHLYDVVNTPGVTADI HMDTGAVVRGFLGQPQLENALTGMDLVIIPA
Sbjct: 61  AMLMKMNPSVSVLHLYDVVNTPGVTADIGHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIV TLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVITLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGL P++VDVPVVGGHAGVTILPLLSQVKPP SFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLHPKEVDVPVVGGHAGVTILPLLSQVKPPSSFTP 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EETEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS
Sbjct: 241 EETEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           +VTELPFFA+KVRLGR+GAEE++QLGPLNEYE
Sbjct: 301 EVTELPFFATKVRLGRRGAEEVYQLGPLNEYE 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103817|ref|XP_002313205.1| predicted protein [Populus trichocarpa] gi|118487242|gb|ABK95449.1| unknown [Populus trichocarpa] gi|222849613|gb|EEE87160.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 294/330 (89%), Positives = 312/330 (94%), Gaps = 3/330 (0%)

Query: 3   FSSEANQRIARISAHLYPPN--LQNSC-LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
             S ANQRIAR+SAHL PPN  ++ SC L++  CRAKGGA GFKVAILGAAGGIGQPLAM
Sbjct: 1   MESVANQRIARVSAHLQPPNSQMEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAM 60

Query: 60  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
           LMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGV
Sbjct: 61  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGV 120

Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
           PRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 239
           PK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EE
Sbjct: 181 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEE 240

Query: 240 TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 299
           TEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF+AS+V
Sbjct: 241 TEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFIASEV 300

Query: 300 TELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           TELPFFA+KVRLGR+GAEE++QLGPLNEYE
Sbjct: 301 TELPFFATKVRLGRRGAEEVYQLGPLNEYE 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158712040|gb|ABW79813.1| malate dehydrogenase [Perilla frutescens]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/329 (89%), Positives = 309/329 (93%), Gaps = 5/329 (1%)

Query: 6   EANQRIARISAHLYPPNLQ-----NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
           EANQRIARISAHL+P N Q     +  LR A CRAKGGA GFKVAILGAAGGIGQPL+ML
Sbjct: 2   EANQRIARISAHLHPSNPQMGSEHHPILRAADCRAKGGAPGFKVAILGAAGGIGQPLSML 61

Query: 61  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
           MK+NPLVSVLHLYDVVN PGVTAD+SHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVP 121

Query: 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
           RKPGMTRDDLFNINAGIVRTLCEGIAK CPNA VNLISNPVNSTVPIAAEVFKKAGTYDP
Sbjct: 122 RKPGMTRDDLFNINAGIVRTLCEGIAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
           KKLLGVTMLDVVRANTFVAEVLGLDPR+V VPVVGGHAGVTILPLLSQVKPPCSFT EET
Sbjct: 182 KKLLGVTMLDVVRANTFVAEVLGLDPREVSVPVVGGHAGVTILPLLSQVKPPCSFTPEET 241

Query: 241 EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT 300
           EYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFAD CLRGL+GDAG+VECAFVASQVT
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADLCLRGLKGDAGIVECAFVASQVT 301

Query: 301 ELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           +LPFFA+KVRLGR GAEE+FQLGPLNEYE
Sbjct: 302 DLPFFATKVRLGRGGAEEVFQLGPLNEYE 330

Source: Perilla frutescens

Species: Perilla frutescens

Genus: Perilla

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/359 (83%), Positives = 318/359 (88%), Gaps = 6/359 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+   + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHS 356
           QVTELPFFASKVRLGR G EE++ LGPLNEYE      L    ++  G  E+ VS+  S
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYER---IGLEKAKKELAGSIEKGVSFIRS 356

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/359 (83%), Positives = 318/359 (88%), Gaps = 6/359 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+   + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHS 356
           QVTELPFFASKVRLGR G EE++ LGPLNEYE      L    ++  G  E+ VS+  S
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYER---IGLEKAKKELAGSIEKGVSFIRS 356

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496625|ref|XP_002263670.2| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|297739396|emb|CBI29427.3| unnamed protein product [Vitis vinifera]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/332 (88%), Positives = 310/332 (93%), Gaps = 3/332 (0%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M  +S+ANQRIARISAHL P N Q   +S L +  CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MHPTSDANQRIARISAHLQPSNFQMGESSGLSRENCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVNTPGVT+DISHMDTGAVVRGFLGQ QLE+ALTGMDLVIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIV+TLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           +DPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPPCSFT 
Sbjct: 181 FDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTP 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EE +YLT RIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD CLRGLRGDAGV++CA+V S
Sbjct: 241 EEIDYLTARIQNGGTEVVEAKAGAGSATLSMAYAAVKFADTCLRGLRGDAGVIQCAYVFS 300

Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           QVTELPFFASKVRLGR GAEEI+ LGPLNEYE
Sbjct: 301 QVTELPFFASKVRLGRTGAEEIYPLGPLNEYE 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536711|ref|NP_001234005.1| glyoxisomal malate dehydrogenase [Solanum lycopersicum] gi|52139820|gb|AAU29200.1| glyoxisomal malate dehydrogenase [Solanum lycopersicum]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 293/328 (89%), Positives = 305/328 (92%), Gaps = 3/328 (0%)

Query: 5   SEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLM 61
           +E +QRIARISAHLYP N Q    S L +  CRAKGGAAGFKVAILGAAGGIGQPLAMLM
Sbjct: 6   AEVHQRIARISAHLYPSNPQMGDGSILERTNCRAKGGAAGFKVAILGAAGGIGQPLAMLM 65

Query: 62  KINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121
           K+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ +LE ALTGMDLVIIPAG+PR
Sbjct: 66  KMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQSELEGALTGMDLVIIPAGIPR 125

Query: 122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181
           KPGMTRDDLF INAGIVRTLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK
Sbjct: 126 KPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPK 185

Query: 182 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETE 241
           KLLGVT LDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKPPCSFT EETE
Sbjct: 186 KLLGVTSLDVVRANTFVAEVLGLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTHEETE 245

Query: 242 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTE 301
           YLT RIQ+GGTEVVEAK GAGSATLSMAYAAVKFAD CL+GLRGDAGVV CAFVASQVTE
Sbjct: 246 YLTKRIQDGGTEVVEAKKGAGSATLSMAYAAVKFADVCLKGLRGDAGVVACAFVASQVTE 305

Query: 302 LPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           LPFFASKVRLGR GAEE++QLGPLNEYE
Sbjct: 306 LPFFASKVRLGRTGAEEVYQLGPLNEYE 333

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.830	0.915	0.823	1.2e-138
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.766	0.823	0.81	6.3e-124
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.771	0.882	0.639	1.4e-96
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.751	0.859	0.653	5.9e-96
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.743	0.719	0.616	1e-91
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.758	0.880	0.557	2.4e-83
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.761	0.881	0.551	8.2e-83
WB|WBGene00003162	341	mdh-2 [Caenorhabditis elegans	0.782	0.894	0.556	2.8e-82
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.735	0.849	0.560	3.6e-82
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.735	0.849	0.560	3.6e-82

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
 Identities = 271/329 (82%), Positives = 286/329 (86%)

Query:     6 EANQRIARISAHLYPPNLQN-----SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
             + NQRIARISAHL PPNL N     S L +  CRAKGG+ GFKVAILGAAGGIGQPLAML
Sbjct:     2 DPNQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAML 61

Query:    61 MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
             MK+NPLVSVLHLYDV N PGVTADISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVP
Sbjct:    62 MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query:   121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
             RKPGMTRDDLFNINAGIVRTL E IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DP
Sbjct:   122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query:   181 KKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEET 240
             KKL+GVTMLDVVRANTFVAE                HAGVTILPLLSQVKPPCSFTQ+E 
Sbjct:   182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEI 241

Query:   241 EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT 300
             EYLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV+FADACLRGLRGDA +VECA+VAS VT
Sbjct:   242 EYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVT 301

Query:   301 ELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
             ELPFFASKVRLGR G +E++ LGPLNEYE
Sbjct:   302 ELPFFASKVRLGRCGIDEVYGLGPLNEYE 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 243/300 (81%), Positives = 258/300 (86%)

Query:     1 MEFSSEANQRIARISAHLYPP-NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
             MEF  +ANQRIARISAHL P    +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++
Sbjct:     1 MEFRGDANQRIARISAHLTPQMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSL 60

Query:    60 LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
             LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+
Sbjct:    61 LMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGI 120

Query:   120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
             PRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct:   121 PRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query:   180 PKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEE 239
             PKKLLGVT LDV RANTFVAE                HAGVTILPLLSQVKPP SFT +E
Sbjct:   181 PKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQE 240

Query:   240 TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 299
              EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA VVEC+FVASQV
Sbjct:   241 IEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQV 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 193/302 (63%), Positives = 222/302 (73%)

Query:    35 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV 94
             + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct:    23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query:    95 RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154
              G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK CP+A +
Sbjct:    83 VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query:   155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXX 214
             N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA TF A               
Sbjct:   143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query:   215 XXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 274
               HAGVTILPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   
Sbjct:   203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAL 262

Query:   275 FADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYES-GLF 333
             FADACL+GL G   V+EC++V S +TELPFFASKVRLG+ G EE+  LGPL+++E  GL 
Sbjct:   263 FADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLE 322

Query:   334 CL 335
              L
Sbjct:   323 AL 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 192/294 (65%), Positives = 218/294 (74%)

Query:    43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
             KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   
Sbjct:    31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDD 90

Query:   103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ L   IAK CP A VN+ISNPVN
Sbjct:    91 LGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVN 150

Query:   163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
             STVPIAAE+FKKAGTYD KKL GVT LDVVRA TF A                 HAG+TI
Sbjct:   151 STVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITI 210

Query:   223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
             LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+G
Sbjct:   211 LPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKG 270

Query:   283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYES-GLFCL 335
             L G   VVEC+FV S +TELPFFASKVRLG+ G EE+  LGPL+++E  GL  L
Sbjct:   271 LNGVPNVVECSFVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEAL 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 180/292 (61%), Positives = 222/292 (76%)

Query:    40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG 99
             A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G
Sbjct:    81 ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTG 140

Query:   100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
               +L + L  +++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISN
Sbjct:   141 PSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISN 200

Query:   160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
             PVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++                HAG
Sbjct:   201 PVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAG 260

Query:   220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 279
             +TILPLLS+ KP  +FT EE + LT RIQN GTEVV+AKAGAGSATLSMAYAA +F ++ 
Sbjct:   261 ITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESS 320

Query:   280 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ--LGPLNEYE 329
             LR L GD  V EC+FV S +T+LPFFAS+V++G+ G E + +  L  L EYE
Sbjct:   321 LRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGLTEYE 372

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 165/296 (55%), Positives = 210/296 (70%)

Query:    37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG 96
             G    +KV + GAAGGIGQPL++L+K NPLV+ L LYD+V+TPGV AD+SH+DT +   G
Sbjct:    20 GQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAG 79

Query:    97 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             F+G  QL ++L G D+V+IPAGVPRKPGMTRDDLFN+NAGI++ +   IAK CP A V +
Sbjct:    80 FIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAI 139

Query:   157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXX 216
             I+NPVN+ VPIAAE+ KKAG YDPK+L GV+ LDVVRA  F+                  
Sbjct:   140 ITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGG 199

Query:   217 HAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA 276
             H+GVTILP+LSQ +P     Q+  E LT RIQ  GTEVV+AKAGAGSATLSMAYA  +FA
Sbjct:   200 HSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFA 259

Query:   277 DACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGL 332
              + L+GL G+  V+EC++V S VTE  FF++ + LG+ G +E   L  LN+YE  L
Sbjct:   260 GSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKL 315

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 165/299 (55%), Positives = 209/299 (69%)

Query:    33 CRAKGGAA--GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 90
             CR    +A    KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    91 GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 150
              A V+GFLG  QL   L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   151 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXX 210
              A + +ISNPVNST+PI +EVFKK G Y+P ++ GVT LD+VRANTFVAE          
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   211 XXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 270
                   HAG TI+PL+SQ  P   F Q++ E LT RIQ  GTEVV+AKAGAGSATLSMAY
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSMAY 252

Query:   271 AAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
             A  +F  + +  + G  GV+EC+FV S+ TE P+F++ + LG+ G E+   +G +  +E
Sbjct:   253 AGARFVFSLVDAMNGKEGVIECSFVRSEETESPYFSTPLLLGKNGIEKNLGIGKITPFE 311

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

WB|WBGene00003162 mdh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 172/309 (55%), Positives = 215/309 (69%)

Query:    25 NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD 84
             NS LR    R    A   KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD
Sbjct:    14 NSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAAD 71

Query:    85 ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG 144
             +SH+D+ A V    G  +L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIVR L   
Sbjct:    72 LSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAV 131

Query:   145 IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXX 204
             IAK  P A + +I+NPVNSTVPIA+EV KKAG YDPK++ GVT LDVVR+  FV+E    
Sbjct:   132 IAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGH 191

Query:   205 XXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
                         HAG+TI+PLLSQVKP   F++EE   LT RIQ+ GTEVV AKAGAGSA
Sbjct:   192 DASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSA 251

Query:   265 TLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTE-LPFFASKVRLGRQGAEEIFQLG 323
             TLSMA A  +FA+A +RG++G+  V +CA+VAS   + + +F++ V LG  G E+I  +G
Sbjct:   252 TLSMALAGARFANALVRGIKGEKNV-QCAYVASDAVKGVEYFSTPVELGPNGVEKILGVG 310

Query:   324 PLNEYESGL 332
              ++ YE  L
Sbjct:   311 KVSAYEQKL 319

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;ISS

GO:0006108 "malate metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 161/287 (56%), Positives = 207/287 (72%)

Query:    43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
             + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E
Sbjct:   266 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFE 312

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 161/287 (56%), Positives = 207/287 (72%)

Query:    43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
             + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E
Sbjct:   266 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFE 312

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4WF48	MDH_ENT38	1, ., 1, ., 1, ., 3, 7	0.5689	0.7333	0.9166	yes	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8443	0.8435	0.9189	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5876	0.7461	0.8609	yes	no
Q1CEJ3	MDH_YERPN	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
A9R584	MDH_YERPG	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8554	0.8435	0.9241	yes	no
Q1CBY7	MDH_YERPA	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.5876	0.7461	0.8609	yes	no
Q9ZP05	MDHG1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8575	0.8435	0.9293	no	no
A7FMU2	MDH_YERP3	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.5608	0.7692	0.9615	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.8342	0.8974	0.9831	N/A	no
P61892	MDH_YERPE	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5931	0.7333	0.9196	yes	no
A4TRK3	MDH_YERPP	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5841	0.7461	0.8609	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8443	0.8435	0.9189	N/A	no
B1LGK2	MDH_ECOSM	1, ., 1, ., 1, ., 3, 7	0.5566	0.7769	0.9711	yes	no
P37228	MDHG_SOYBN	1, ., 1, ., 1, ., 3, 7	0.8419	0.8435	0.9320	yes	no
P0C7R5	MDH_YERPS	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5838	0.7846	0.8973	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.5598	0.7769	0.9711	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5876	0.7461	0.8609	yes	no
B4T769	MDH_SALNS	1, ., 1, ., 1, ., 3, 7	0.5598	0.7769	0.9711	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.5566	0.7769	0.9711	yes	no
Q6D9D1	MDH_ERWCT	1, ., 1, ., 1, ., 3, 7	0.5580	0.7794	0.9774	yes	no
B1JMK1	MDH_YERPY	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5841	0.7461	0.8609	yes	no
C6DKH1	MDH_PECCP	1, ., 1, ., 1, ., 3, 7	0.5645	0.7794	0.9743	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.8328	0.9051	0.9915	N/A	no
B5REV7	MDH_SALG2	1, ., 1, ., 1, ., 3, 7	0.5598	0.7769	0.9711	yes	no
B7VID0	MDH_VIBSL	1, ., 1, ., 1, ., 3, 7	0.5758	0.7333	0.9196	yes	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5876	0.7461	0.8609	yes	no
B7NKU9	MDH_ECO7I	1, ., 1, ., 1, ., 3, 7	0.5566	0.7769	0.9711	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.5566	0.7769	0.9711	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8601	0.8307	0.9152	yes	no
B2K2N5	MDH_YERPB	1, ., 1, ., 1, ., 3, 7	0.5533	0.7769	0.9711	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5566	0.7769	0.9711	yes	no
A1JIV0	MDH_YERE8	1, ., 1, ., 1, ., 3, 7	0.5501	0.7769	0.9742	yes	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5862	0.7333	0.9196	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.5598	0.7769	0.9711	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	1.1.1.37	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-148
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-144
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-138
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	9e-78
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	3e-56
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	2e-51
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	7e-48
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	2e-46
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	2e-37
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	5e-36
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	1e-32
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-31
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	8e-28
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	2e-24
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	2e-21
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	3e-20
cd00704	323	cd00704, MDH, Malate dehydrogenase	3e-18
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-16
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	3e-16
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	2e-15
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	7e-14
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	2e-13
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	2e-12
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	5e-12
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	5e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	3e-10
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	2e-08
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	4e-08
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	3e-06
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	0.002

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  644 bits (1664), Expect = 0.0
 Identities = 240/297 (80%), Positives = 260/297 (87%)

Query: 33  CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA 92
           CRAKGGA GFKVA+LGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV AD+SH++T A
Sbjct: 10  CRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPA 69

Query: 93  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
            VRGFLG  QL +AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+TLCE +AK CPNA
Sbjct: 70  QVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNA 129

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 212
            VN+ISNPVNSTVPIAAEV KKAG YDPKKL GVT LDVVRANTFVAE  GLDP DVDVP
Sbjct: 130 LVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVP 189

Query: 213 VVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA 272
           VVGGHAG+TILPLLSQ  P  SFT EE E LT RIQNGGTEVVEAKAGAGSATLSMAYAA
Sbjct: 190 VVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAA 249

Query: 273 VKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
            +FADACLRGL G+A VVEC++V S+VTELPFFASKVRLGR G EE+  LGPL+EYE
Sbjct: 250 ARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYE 306

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  555 bits (1432), Expect = 0.0
 Identities = 204/291 (70%), Positives = 241/291 (82%)

Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 101
            KVA+LGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG  
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIVR L   +AK CP A + +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 162 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 221
           NSTVPIAAEV KKAG YDPK+L GVT LDVVRANTFVAE+LGLDP  V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 222 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 281
           ILPLLSQ +PP +F QEE E LT+RIQ GG EVV+AKAGAGSATLSMAYA  +FA++ LR
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240

Query: 282 GLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGL 332
           GL+G+ GV+ECA+V S VTE PFFA+ V LG+ G E+   LG LN+YE  L
Sbjct: 241 GLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKL 291

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  422 bits (1087), Expect = e-148
 Identities = 177/288 (61%), Positives = 223/288 (77%), Gaps = 1/288 (0%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G+  
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           LENAL G D+V+IPAGVPRKPGMTRDDLFN+NAGIV+ L   +A+ CP A + +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
           STVPIAAEV KK G YDP KL GVT LD+VRANTFVAE+ G DP +V+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
           +PL+SQ      FT+++ E L +RIQN GTEVV+AKAGAGSATLSMA+A  +F  + +RG
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 283 LRGDAGVVECAFVASQ-VTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           L+G+ GVVECA+V S  VTE  FFA+ + LG+ G E+   +G L+ +E
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFE 288

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  412 bits (1061), Expect = e-144
 Identities = 169/289 (58%), Positives = 206/289 (71%), Gaps = 4/289 (1%)

Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L E +AK CP A + +I+NP
Sbjct: 62  -DPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 220
           VN+TV IAAEV KKAG YD  KL GVT LDV+R+ TFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 221 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 280
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 281 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           R L+G+ GVVECA+V        FFA  V LG+ G EE   +G L+ +E
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFE 288

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  395 bits (1017), Expect = e-138
 Identities = 184/292 (63%), Positives = 220/292 (75%), Gaps = 3/292 (1%)

Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 101
           FKVA+LGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+    
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161
             E AL G DLV+I AGVPRKPGMTRDDLFN NA IVR L   +A   P A V ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 162 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 221
           NSTVPIAAE  KKAG YDP+KL GVT LDVVRA  FVAE LG++P DV+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 222 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 281
           I+PLLSQ     S  +E+ E +T+R+Q GG EVV+AK GAGSATLSMAYAA +++ + L+
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLK 246

Query: 282 GLRGDAGVVECAFVASQVT-ELPFFASKVRLGRQGAEEIFQLGPLNEYESGL 332
            LRGD G+VECAFV S +  E PFF+S V LG++G E +  +GPLN YE  L
Sbjct: 247 ALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEEL 298

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  242 bits (619), Expect = 9e-78
 Identities = 108/302 (35%), Positives = 155/302 (51%), Gaps = 21/302 (6%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                 L G D+V+I AGVPRKPGMTR DL   NA IV+ + + IAK  P+A V +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 220
           V+    IA +    +G    + +   T+LD  R  TF+AE LG+ P+DV   V+G H G 
Sbjct: 121 VDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-GD 176

Query: 221 TILPLLSQV----KPPCSF----TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA 272
           T++PL SQ     KP        T+E+ E L  R++N G E++EAK GAG      A A 
Sbjct: 177 TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAAL 234

Query: 273 VKFADACLRGLRGDAGVVECAFVASQ-VTELPFFASKVRLGRQGAEEIFQLGPLNEYESG 331
            +  +A LR  +    +    ++  +   E  +F     LG+ G EEI +L  L++ E  
Sbjct: 235 ARMVEAILRDEK--RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQE 291

Query: 332 LF 333
             
Sbjct: 292 KL 293

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  180 bits (459), Expect = 3e-56
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL   D+V+I AGVPRKPGMTR DL N NAGI + +   IAK  P+A V ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    IA +V   +G    + +  
Sbjct: 121 VDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  169 bits (430), Expect = 2e-51
 Identities = 69/155 (44%), Positives = 90/155 (58%), Gaps = 16/155 (10%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQVKPPCSFT 236
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK     T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 237 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGD--AGVVECAF 294
             E E L  R+QN G EV+EAK  AGS T SMAYAA + A A LRG  G    GV    +
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 295 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
                 +  +F+  V LG+ G E++ ++ PLN++E
Sbjct: 119 Y--GSPDDIYFSVPVVLGKDGVEKVVEILPLNDFE 151

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  164 bits (417), Expect = 7e-48
 Identities = 101/312 (32%), Positives = 152/312 (48%), Gaps = 46/312 (14%)

Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTGAVVRGF 97
           ++I+GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       +   V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
                +  +    D+V+I AG+PRKPGM+RDDL   NA IV+ + E I K  PNA V ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++        V  KA  +   +++G+  +LD  R   F+AE LG+  +DV   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 271
           H G T++PL         P     T+EE + +  R +NGG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 272 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 321
             +  +A L+           L G+ G+ +          +P     V LG+ G E+I +
Sbjct: 229 IAEMVEAILKDKKRVLPCSAYLEGEYGIKDIFV------GVP-----VVLGKNGVEKIIE 277

Query: 322 LGPLNEYESGLF 333
           L  L + E   F
Sbjct: 278 L-DLTDEEKEAF 288

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  160 bits (408), Expect = 2e-46
 Identities = 101/312 (32%), Positives = 162/312 (51%), Gaps = 44/312 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K++I+GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF  +
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N    + G D+V+I AGVPRKPGM+RDDL  INA I++ + EGI K  P+A V ++
Sbjct: 59  ITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NPV++   +A     K   +   +++G+  +LD  R  TF+AE L +  +DV   V+GG
Sbjct: 119 TNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGG 174

Query: 217 HAGVTILPLLSQ-----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 271
           H G +++PL+       +      ++E+ + +  R + GG E+V      GSA  + A +
Sbjct: 175 H-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAAS 232

Query: 272 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 321
             +  +A L+           L G+ GV +          +P     V+LG+ G E+I +
Sbjct: 233 IAEMVEAILKDKKRVLPCSAYLEGEYGVKDVYV------GVP-----VKLGKNGVEKIIE 281

Query: 322 LGPLNEYESGLF 333
           L  L++ E   F
Sbjct: 282 L-ELDDEEKAAF 292

Length = 307

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  135 bits (343), Expect = 2e-37
 Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 44  VAILGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG 99
           +A++GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
                 A    D+VII AGV RKPGM R DL   N  IV+ + + I K  P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 219
           PV+    I   +  +      +K++G+  LD +R    +AE LG+DP DV V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 220 VTILPLLSQVKP 231
            + +P  S V+ 
Sbjct: 177 -SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  133 bits (337), Expect = 5e-36
 Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 31/308 (10%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTGAVVRGFLG 99
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
               E  +   D+V+I AGV RK  MTR+DL  IN  I++++ E + K CPNA V  ++N
Sbjct: 65  TNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 218
           P++       +VF++       K+ G+  +LD  R    +AE LG+ P DV   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 219 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           G  ++PL         P   F      T++E   +  + +N G E+V+     GSA  + 
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAP 237

Query: 269 AYAAVKFADACLRGLRGDAGVVECAFVAS---QVTELPFFASKVRLGRQGAEEIFQLGPL 325
           A A V   +A L+  +    V+ C+   +       L F    V +G +G E++ +L  L
Sbjct: 238 AAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNL-FVGVPVVIGGKGIEKVIEL-EL 292

Query: 326 NEYESGLF 333
           N  E  LF
Sbjct: 293 NAEEKELF 300

Length = 319

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  124 bits (313), Expect = 1e-32
 Identities = 107/332 (32%), Positives = 171/332 (51%), Gaps = 47/332 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVR-GFLG 99
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATV 154
               E+ + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CPNA V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPV 213
            +I+NP++  V    ++ ++       K+ G+  +LD  R  T++AE LG++PRDV   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 214 VGGHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGS 263
           +G H G  ++PL   V     P   F      TQEE + +  R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQ--VTELPFFASKVRLGRQGAEEIF 320
           A  + A AA++ A+A L+  +    V+ C A++  Q    ++ +  +   +G  G E+I 
Sbjct: 239 AYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDI-YMGTPAVIGANGVEKII 294

Query: 321 QLGPLNEYESGLFCLLHLCFQDWLGESEERVS 352
           +L  L   E           Q    ES + V 
Sbjct: 295 EL-DLTPEE-----------QKKFDESIKEVK 314

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  121 bits (305), Expect = 1e-31
 Identities = 86/311 (27%), Positives = 134/311 (43%), Gaps = 44/311 (14%)

Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRGF 97
           + I+GA G +G  +A  +    L S L L DV      G   D+SH      TG +VRG 
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG- 58

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
                        D+V+I AG PRKPG TR DL N NA I+R++   + K  P+A + ++
Sbjct: 59  ----GDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV 114

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           SNPV+    I   V +K       +++G  T+LD  R  + +AE L +DP+ V   V+G 
Sbjct: 115 SNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170

Query: 217 HAGVTILPLLSQVK-------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGA----GSAT 265
           H G + +   S              FT+ + E +   ++  G E++  K        +A 
Sbjct: 171 H-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAI 229

Query: 266 LSMAYAAVKFADACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 322
             +  + +      L       G  G+ + A        +P       +GR+G   I ++
Sbjct: 230 ADIVKSILLDERRVLPVSAVQEGQYGIEDVAL------SVP-----AVVGREGVVRILEI 278

Query: 323 GPLNEYESGLF 333
            PL E E    
Sbjct: 279 -PLTEDEEAKL 288

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  111 bits (278), Expect = 8e-28
 Identities = 90/310 (29%), Positives = 151/310 (48%), Gaps = 40/310 (12%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGF--- 97
           K++++GA G +G   A  +    L  ++ L DVV     G   D   M   + V GF   
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALD---MYEASPVGGFDTK 57

Query: 98  -LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             G     +     D+V+I AG+PRKPGM+R+DL ++NAGIVR +   I +  PN  + +
Sbjct: 58  VTGTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVV 116

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVG 215
           +SNP+++   +A +       +  ++++G   +LD  R  TF+A  LG+  +DV   V+G
Sbjct: 117 VSNPLDAMTYVAWQK----SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLG 172

Query: 216 GHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265
           GH G  ++PL          ++ +        E    +  R + GG E+V      GSA 
Sbjct: 173 GH-GDAMVPLVRYSTVAGIPVADLISA-----ERIAEIVERTRKGGGEIVNL-LKQGSAY 225

Query: 266 LSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQV-TELPFFASKVRLGRQGAEEIFQLG 323
            + A + V+  +A L+  +    V+ C A++  Q   +  +    V LG+ G E I++L 
Sbjct: 226 YAPAASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL- 281

Query: 324 PLNEYESGLF 333
            L++ E  L 
Sbjct: 282 KLDQSELALL 291

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  101 bits (254), Expect = 2e-24
 Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 43/243 (17%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 85
           KV+I+GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 86  SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI 145
                 + V              G D+VII AGVPRK GM+R DL   NA IV+   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 146 AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGL 204
           A+  P+  + +++NPV+     A    K++G +D  ++ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 205 DPRDVDVPVVGGHAGVTILPLLSQVK----PPCSFTQEE---TEYLTNRIQNGGTEVVEA 257
              +V   ++G H G +++PL+S       P   F + +    E +   ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 258 KAG 260
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 26/241 (10%)

Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
               DLV+I AG P+KPG TR +L   N  I++++   + K   +    + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL 225
           I   V  K   +   +++G  T+LD  R    +AE LG+DP+ V   ++G H G + +P+
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GDSEVPV 176

Query: 226 LSQVK----PPCSF---TQEETEYLTNRI----QNGGTEVVEAKAGAGSATLSMAYAAVK 274
            S       P   +      ET+     I    ++   E++  K   G+    +  A  +
Sbjct: 177 WSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGMAVAR 233

Query: 275 FADACLRGLRGDAGVVEC-AFVASQVTELPFFASKVR-LGRQGAEEIFQLGPLNEYESGL 332
             +A L        V+   A++  +      +      LGR G EEI +L PL++ E   
Sbjct: 234 IVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEA 289

Query: 333 F 333
           F
Sbjct: 290 F 290

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 89.8 bits (224), Expect = 3e-20
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 41/245 (16%)

Query: 110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 169
            D+V+I AG P+KPG TR DL   NA I++++   I     +    + SNPV+    +  
Sbjct: 69  ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VIT 124

Query: 170 EVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH--------AGV 220
            V +K       +++G  T LD  R    +AE L +DPR V   V+G H        + V
Sbjct: 125 YVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTV 184

Query: 221 TIL--PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 278
           T+   PLL  +K     ++ + + +   ++  G E++  K   G+    +A A  +   A
Sbjct: 185 TVGGKPLLDLLKEGK-LSELDLDEIEEDVRKAGYEIINGK---GATYYGIATALARIVKA 240

Query: 279 CLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 328
            L            L G+ G  +            +      +GR G EE+ +L  L E 
Sbjct: 241 ILNDENAILPVSAYLDGEYGEKDV-----------YIGVPAIIGRNGVEEVIEL-DLTEE 288

Query: 329 ESGLF 333
           E   F
Sbjct: 289 EQEKF 293

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 72/262 (27%), Positives = 104/262 (39%), Gaps = 48/262 (18%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-- 93
            V I GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 94  -------VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA 146
                  ++G +     E A   +D+ I+    PRKPGM R DL   NA I +   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 147 KCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLD 205
           K   P   V ++ NP N+   IA    K A    PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 206 PRDV-DVPVVGGHAGVTILPLLSQ-------------VKPPCSFTQEETEYLTNRIQNGG 251
             DV +V + G H+  T +P LS                    +  +E       +Q  G
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDE---FVKTVQKRG 226

Query: 252 TEVVEAKAGAGSATLSMAYAAV 273
             +++ + GA SA  S A A  
Sbjct: 227 AAIIKKR-GASSA-ASAAKAIA 246

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 78.3 bits (194), Expect = 3e-16
 Identities = 89/314 (28%), Positives = 135/314 (42%), Gaps = 52/314 (16%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTGAVVRGFL 98
           KVAI+GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 99  GQPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
           G     + A    D+V+I AG  +KPG TR DL   N  I + +   I K  P+A + ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NPV+    +   V  K     P +++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 217 H-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA-- 261
           H              GV +         P  F +E  E +   ++N   E++E K GA  
Sbjct: 172 HGDSEVAVWSSANIGGVPLDEFCKLCGRP--FDEEVREEIFEEVRNAAYEIIERK-GATY 228

Query: 262 ---GSATLSMAYAAVKFADACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQG 315
              G A   +  A ++  ++ L     L G  G+ + A        LP     V  GR G
Sbjct: 229 YAIGLALARIVEAILRDENSVLTVSSLLDGQYGIKDVAL------SLP---CIV--GRSG 277

Query: 316 AEEIFQLGPLNEYE 329
            E +    PL+E E
Sbjct: 278 VERVLPP-PLSEEE 290

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 74/252 (29%), Positives = 112/252 (44%), Gaps = 31/252 (12%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 91
           +VA+ GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 92  -AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 149
             ++ G +     E A   +D  ++    PRKPGM R DL + N  I +   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 150 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            +  V ++ NP N+   IA+   K A    PK    +T LD  RA   +A   G+   DV
Sbjct: 121 KDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 210 -DVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGA 261
            +V + G H+  T +P  +       P     ++ ++L       +Q  G  V+EA+ GA
Sbjct: 178 KNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR-GA 235

Query: 262 GSATLSMAYAAV 273
            SA  S A AA+
Sbjct: 236 SSA-ASAANAAI 246

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 31/193 (16%)

Query: 106 ALTGMDLVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 163
                D+++I AG    PG T  R DL   NA I+R +   I K    A + LI+NP++ 
Sbjct: 65  DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDI 124

Query: 164 TVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
            V IAA  F     Y   K++G  TMLD  R    VA+  G+DP++V   V+G H G   
Sbjct: 125 AVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHA 179

Query: 223 LPLLSQV---------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 267
            P+ S V               K P        + L   +     +V   K G  +A ++
Sbjct: 180 FPVWSLVNIAGLPLDELEALFGKEPID-----KDELLEEVVQAAYDVFNRK-GWTNAGIA 233

Query: 268 MAYAAVKFADACL 280
              +A +   A L
Sbjct: 234 K--SASRLIKAIL 244

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 71.4 bits (175), Expect = 7e-14
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 31/254 (12%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTG-A 92
           +V + GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 93  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPN 151
           ++ G +       A T +D+ I+    PRK GM R DL + N  I +     + K    +
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 210
             V ++ NP N+   + +     A +  PK    +T LD  RA   VAE  G+   DV +
Sbjct: 119 CKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 211 VPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR-----------IQNGGTEVVEAKA 259
           V + G H+  T  P ++         Q+                   +Q  G  ++ A+ 
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233

Query: 260 GAGSATLSMAYAAV 273
              S+ LS A AAV
Sbjct: 234 -KLSSALSAAKAAV 246

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 36/244 (14%)

Query: 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 168
             DLV+I AG P+KPG TR DL   N  I +++   +     +    + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 169 AEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH---------- 217
                K   +  ++++G  T LD  R    ++E L +DPR V   ++G H          
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSH 188

Query: 218 AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA- 276
           A V  +PL   ++    + +E+ + +   +++   E++E K GA    ++MA A +  A 
Sbjct: 189 ANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK-GATYYGIAMALARITKAI 247

Query: 277 ----DACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
               +A L     L G  G  +            +      + R G  EI +L PLN+ E
Sbjct: 248 LNNENAVLPVSAYLEGQYGEEDV-----------YIGVPAVVNRNGIREIVEL-PLNDDE 295

Query: 330 SGLF 333
              F
Sbjct: 296 KQKF 299

Length = 315

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 77/323 (23%), Positives = 126/323 (39%), Gaps = 56/323 (17%)

Query: 41  GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF 97
             KV ++G    G+   +++L K   L   L L DVV     G   D+ H   G+    F
Sbjct: 3   RNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH---GSA---F 54

Query: 98  LGQPQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
           L  P++E     +      +VI+ AG  +  G +R DL   N  I + +   + K  PNA
Sbjct: 55  LKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNA 114

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 211
            + ++SNPV+    I   V  K       +++G    LD  R    +AE LG+ P  V  
Sbjct: 115 ILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHG 170

Query: 212 PVVGGH--------AGVTI--LPLLSQVKPPCSFTQEETEY-LTNRIQNGGTEVVEAKAG 260
            ++G H        +GV +  + L        +    E    +  ++ +   EV++ K  
Sbjct: 171 WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK-- 228

Query: 261 AGSATLSMAYAAVKFADACLRGLR----------GDAGVVECAFVASQVTELPFFASKVR 310
            G  + ++  +     DA LR             G  G+ +  F++     LP       
Sbjct: 229 -GYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLS-----LP-----CI 277

Query: 311 LGRQGAEEIFQLGPLNEYESGLF 333
           LG  G   + +  PL E E    
Sbjct: 278 LGENGITHVIKQ-PLTEEEQEKL 299

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 41/259 (15%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 89
           +V + GAAG I   L        +     P++  LHL D+   P      GV  ++   D
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDI--PPALKALEGVVMEL--QD 57

Query: 90  TG-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 148
               +++  +     E A   +D+ I+   +PRK GM R DL   N  I +   E + K 
Sbjct: 58  CAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKY 117

Query: 149 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPR 207
              N  V ++ NP N+   I     K A +   +    +T LD  RA + +A  LG+   
Sbjct: 118 AKKNVKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVS 174

Query: 208 DV-DVPVVGGHAGVTILPLLSQ--------VKPPCSFTQEETEYLTN----RIQNGGTEV 254
           DV +V + G H+  T  P ++          KP     +++  +L       +Q  G  V
Sbjct: 175 DVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDD-AWLNGEFISTVQKRGAAV 232

Query: 255 VEAKAGAGSATLSMAYAAV 273
           ++A+    SA +S A A  
Sbjct: 233 IKAR-KLSSA-MSAAKAIC 249

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 38/295 (12%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 100
           KV+++G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 101 PQL----ENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
            ++    + A+T G DL I+ AG  + PG +R +L   N  + R +   +AK  P+  + 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           ++SNPV+    +A   +K +G +   +++G  T LD  R    +A+ L ++ +DV   +V
Sbjct: 152 IVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 215 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
           G H              GV +L  L   K   ++ +E  E +   + +   EV++ K   
Sbjct: 208 GEHGDSSVALWSSVSVGGVPVLSFLE--KQQIAYEKETLEEIHRAVVDSAYEVIKLK--- 262

Query: 262 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFAS-KVRLGRQG 315
           G  + ++ Y+      + LR  R    V   A     + E   F S   +LGR G
Sbjct: 263 GYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNG 317

Length = 350

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 96  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATV 154
           G +   +LE A   +D   + A VP KPG  R DL   N  I +   E +++   P   V
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 214
            +I NPVN+   +A      A     +    + MLD  RA + +A  L +    +   VV
Sbjct: 107 LVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV 163

Query: 215 GGHAGVTILPLLSQV 229
            G+   +++  L+  
Sbjct: 164 WGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 33/253 (13%)

Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 91
           +VA+ GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 92  A--VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C 148
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 149 CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRD 208
             +  V ++ NP N+   IA    K A    P     +T LD  RA + +A+  G+   D
Sbjct: 119 SRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 209 V-DVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAG 260
           V ++ + G H+  T  P  +       P +    +  +L +     +Q  G  +++A+ G
Sbjct: 176 VKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-G 233

Query: 261 AGSATLSMAYAAV 273
           A SA  S A AA+
Sbjct: 234 ASSAA-SAANAAI 245

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 48  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLEN 105
           G   G  QP+ + ++ I P    L+        GV  ++  +D    +++G +    +  
Sbjct: 5   GVMLGPDQPVILHMLDIPPAAEALN--------GVKMEL--IDAAFPLLKGVVATTDVVE 54

Query: 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 164
           A  G+++ ++  G PRK GM R D+ + N  I ++    + K   P+  V +++NP N+ 
Sbjct: 55  ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTN 114

Query: 165 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHA 218
             I  E    A +   K +  +T LD  RA   ++E LG+   DV +V + G H+
Sbjct: 115 ALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS 166

Length = 309

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 33/253 (13%)

Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGA 92
           +VA+ GAAG IG  L        ML K  P++  L L ++   P + A    +  +D  A
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKALEGVVMELDDCA 61

Query: 93  --VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 149
             ++ G +       A    D+ ++    PR PGM R DL   N  I     + + +   
Sbjct: 62  FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121

Query: 150 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            +  V ++ NP N+   IA    K A     +    +T LD  RA + +A   G+   D+
Sbjct: 122 RDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADI 178

Query: 210 -DVPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN----RIQNGGTEVVEAKAG 260
             + V G H+  T  P         KP      ++  +L +     +Q  G  ++EA+ G
Sbjct: 179 KKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAIIEAR-G 235

Query: 261 AGSATLSMAYAAV 273
           A SA  S A AA+
Sbjct: 236 ASSAA-SAANAAI 247

Length = 326

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 120 PRKPGMTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 175
           PR PGM R DL +IN  I     + L E +A    N  V ++ NP N+   I     K A
Sbjct: 187 PRGPGMERADLLDINGQIFAEQGKALNE-VAS--RNVKVIVVGNPCNTNALIC---LKNA 240

Query: 176 GTYDPKKLLGVTMLDVVRA 194
                K    +T LD  RA
Sbjct: 241 PNIPAKNFHALTRLDENRA 259

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PLN02602	350	lactate dehydrogenase	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PLN00135	309	malate dehydrogenase	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.98
PRK15076	431	alpha-galactosidase; Provisional	99.98
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.97
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.96
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.96
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.88
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.89
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.63
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.63
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.53
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.5
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.46
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.45
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.41
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.36
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.31
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.29
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.29
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.29
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.28
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.28
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.27
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.23
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.19
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.17
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.16
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.11
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.09
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.05
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.0
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.99
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.95
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.95
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.94
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.91
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.84
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.79
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.71
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.71
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.69
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.67
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.65
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.6
PLN02166	436	dTDP-glucose 4,6-dehydratase	97.58
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.58
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.57
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.56
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.52
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.48
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.48
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.47
PLN00198	338	anthocyanidin reductase; Provisional	97.42
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.41
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	97.4
PLN02427	386	UDP-apiose/xylose synthase	97.35
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.32
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.3
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	97.28
PLN02650	351	dihydroflavonol-4-reductase	97.27
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.25
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.25
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.23
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.22
PLN02206	442	UDP-glucuronate decarboxylase	97.21
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	97.2
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	97.18
PLN03209	576	translocon at the inner envelope of chloroplast su	97.18
PRK07680	273	late competence protein ComER; Validated	97.15
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.15
CHL00194	317	ycf39 Ycf39; Provisional	97.12
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	97.12
PRK07417	279	arogenate dehydrogenase; Reviewed	97.11
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	97.08
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.03
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.03
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.02
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.01
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.0
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.98
PLN02214	342	cinnamoyl-CoA reductase	96.98
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.97
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.96
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.95
PRK08655	437	prephenate dehydrogenase; Provisional	96.95
PLN02688	266	pyrroline-5-carboxylate reductase	96.95
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.94
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.89
PRK14982	340	acyl-ACP reductase; Provisional	96.88
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.87
PRK10675	338	UDP-galactose-4-epimerase; Provisional	96.85
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	96.83
PRK06194	287	hypothetical protein; Provisional	96.82
PRK12480	330	D-lactate dehydrogenase; Provisional	96.82
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.8
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.77
PRK07102	243	short chain dehydrogenase; Provisional	96.76
PLN02583	297	cinnamoyl-CoA reductase	96.75
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.73
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.72
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.72
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.71
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.69
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.69
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.68
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.65
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.64
PRK08267	260	short chain dehydrogenase; Provisional	96.63
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.63
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.63
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.61
PRK06545	359	prephenate dehydrogenase; Validated	96.61
PRK08507	275	prephenate dehydrogenase; Validated	96.61
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	96.6
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.59
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.57
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.57
PLN02778	298	3,5-epimerase/4-reductase	96.57
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.56
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.55
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.55
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.54
PRK05866	293	short chain dehydrogenase; Provisional	96.53
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.52
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.49
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	96.47
PLN02240	352	UDP-glucose 4-epimerase	96.47
PRK08291	330	ectoine utilization protein EutC; Validated	96.44
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.44
PRK08223	287	hypothetical protein; Validated	96.44
PRK07326	237	short chain dehydrogenase; Provisional	96.37
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	96.37
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.36
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.35
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.34
PLN02780	320	ketoreductase/ oxidoreductase	96.33
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.31
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.31
PRK12939	250	short chain dehydrogenase; Provisional	96.29
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.29
PLN02712	667	arogenate dehydrogenase	96.29
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.28
PRK08251	248	short chain dehydrogenase; Provisional	96.28
PLN02260	668	probable rhamnose biosynthetic enzyme	96.27
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.27
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.25
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.25
PRK08618	325	ornithine cyclodeaminase; Validated	96.23
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.23
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.22
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.21
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.21
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.19
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.17
PRK07201	657	short chain dehydrogenase; Provisional	96.16
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.16
PRK13243	333	glyoxylate reductase; Reviewed	96.16
PLN02256	304	arogenate dehydrogenase	96.15
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.14
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.14
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.13
PRK06407	301	ornithine cyclodeaminase; Provisional	96.12
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	96.11
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.1
PLN02653	340	GDP-mannose 4,6-dehydratase	96.1
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.1
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.09
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.09
PLN02572	442	UDP-sulfoquinovose synthase	96.08
PRK10538	248	malonic semialdehyde reductase; Provisional	96.07
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.07
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	96.07
PRK12828	239	short chain dehydrogenase; Provisional	96.03
PRK07574	385	formate dehydrogenase; Provisional	96.01
PRK08818	370	prephenate dehydrogenase; Provisional	96.01
PRK12367	245	short chain dehydrogenase; Provisional	96.01
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	96.01
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.0
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.0
PRK05875	276	short chain dehydrogenase; Provisional	96.0
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	96.0
PRK07806	248	short chain dehydrogenase; Provisional	96.0
PRK05855	582	short chain dehydrogenase; Validated	96.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.99
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.96
COG2910	211	Putative NADH-flavin reductase [General function p	95.95
PRK06914	280	short chain dehydrogenase; Provisional	95.93
PRK12937	245	short chain dehydrogenase; Provisional	95.92
PRK07340	304	ornithine cyclodeaminase; Validated	95.91
PRK12829	264	short chain dehydrogenase; Provisional	95.91
PTZ00431	260	pyrroline carboxylate reductase; Provisional	95.91
PRK08605	332	D-lactate dehydrogenase; Validated	95.91
PRK06141	314	ornithine cyclodeaminase; Validated	95.9
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	95.9
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.87
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.87
PRK08265	261	short chain dehydrogenase; Provisional	95.85
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.85
PRK07063	260	short chain dehydrogenase; Provisional	95.85
PRK05717	255	oxidoreductase; Validated	95.83
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.83
PRK06172	253	short chain dehydrogenase; Provisional	95.81
PRK07814	263	short chain dehydrogenase; Provisional	95.81
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.8
PRK06924	251	short chain dehydrogenase; Provisional	95.79
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.79
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.79
PRK08643	256	acetoin reductase; Validated	95.79
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.77
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.76
PLN02253	280	xanthoxin dehydrogenase	95.75
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.75
PRK05884	223	short chain dehydrogenase; Provisional	95.73
PRK07904	253	short chain dehydrogenase; Provisional	95.73
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.72
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.72
PRK07024	257	short chain dehydrogenase; Provisional	95.72
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	95.71
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.69
PRK07832	272	short chain dehydrogenase; Provisional	95.68
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	95.68
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.68
PRK15059	292	tartronate semialdehyde reductase; Provisional	95.66
PLN03139	386	formate dehydrogenase; Provisional	95.64
PRK05876	275	short chain dehydrogenase; Provisional	95.62
PRK07067	257	sorbitol dehydrogenase; Provisional	95.62
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.61
PRK05865	854	hypothetical protein; Provisional	95.61
PRK07677	252	short chain dehydrogenase; Provisional	95.61
PLN02928	347	oxidoreductase family protein	95.58
PRK06181	263	short chain dehydrogenase; Provisional	95.58
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.58
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.57
PRK07774	250	short chain dehydrogenase; Provisional	95.56
PRK09242	257	tropinone reductase; Provisional	95.54
PRK06823	315	ornithine cyclodeaminase; Validated	95.53
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.53
PRK06180	277	short chain dehydrogenase; Provisional	95.53
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.52
PRK06196	315	oxidoreductase; Provisional	95.52
PLN02686	367	cinnamoyl-CoA reductase	95.52
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.52
PRK06057	255	short chain dehydrogenase; Provisional	95.51
PRK05650	270	short chain dehydrogenase; Provisional	95.5
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.5
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	95.5
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.5
PRK07589	346	ornithine cyclodeaminase; Validated	95.49
PRK07069	251	short chain dehydrogenase; Validated	95.49
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	95.48
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.46
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.46
PRK09186	256	flagellin modification protein A; Provisional	95.45
PRK08328	231	hypothetical protein; Provisional	95.45
PRK09291	257	short chain dehydrogenase; Provisional	95.43
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.43
PRK07411	390	hypothetical protein; Validated	95.42
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.4
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.4
PRK07890	258	short chain dehydrogenase; Provisional	95.4
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.39
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	95.39
PRK06138	252	short chain dehydrogenase; Provisional	95.39
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.38
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	95.38
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.38
PRK06841	255	short chain dehydrogenase; Provisional	95.37
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.37
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.36
PRK06198	260	short chain dehydrogenase; Provisional	95.35
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.35
PRK06182	273	short chain dehydrogenase; Validated	95.34
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.34
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.32
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.3
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.29
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.29
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.27
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.27
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.27
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.27
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.26
PRK06046	326	alanine dehydrogenase; Validated	95.26
PRK08339	263	short chain dehydrogenase; Provisional	95.26
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.25
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.25
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.25
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.24
PRK06197	306	short chain dehydrogenase; Provisional	95.24
PRK06482	276	short chain dehydrogenase; Provisional	95.23
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	95.22
PRK06128	300	oxidoreductase; Provisional	95.21
PRK05867	253	short chain dehydrogenase; Provisional	95.2
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.19
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.19
PRK06199	379	ornithine cyclodeaminase; Validated	95.19
PRK07576	264	short chain dehydrogenase; Provisional	95.18
PRK08226	263	short chain dehydrogenase; Provisional	95.18
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.17
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.17
PRK08278	273	short chain dehydrogenase; Provisional	95.16
PRK07856	252	short chain dehydrogenase; Provisional	95.14
PRK14851	679	hypothetical protein; Provisional	95.14
PRK06179	270	short chain dehydrogenase; Provisional	95.14
PRK12827	249	short chain dehydrogenase; Provisional	95.13
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	95.13
PRK07074	257	short chain dehydrogenase; Provisional	95.12
TIGR01746	367	Thioester-redct thioester reductase domain. It has	95.12
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.1
PRK05854	313	short chain dehydrogenase; Provisional	95.1
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.09
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.09
PLN02712	667	arogenate dehydrogenase	95.08
PRK07478	254	short chain dehydrogenase; Provisional	95.06
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.06
PRK06101	240	short chain dehydrogenase; Provisional	95.05
PRK07062	265	short chain dehydrogenase; Provisional	95.04
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.04
PRK07831	262	short chain dehydrogenase; Provisional	95.03
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.02
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.02
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.01
PRK07825	273	short chain dehydrogenase; Provisional	95.01
PRK13529	563	malate dehydrogenase; Provisional	94.99
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	94.99
PLN00203	519	glutamyl-tRNA reductase	94.98
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.95
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	94.95
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.92
PRK08589	272	short chain dehydrogenase; Validated	94.92
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	94.9
TIGR00036	266	dapB dihydrodipicolinate reductase.	94.88
PRK09072	263	short chain dehydrogenase; Provisional	94.87
PRK12935	247	acetoacetyl-CoA reductase; Provisional	94.87
PRK06139	330	short chain dehydrogenase; Provisional	94.86
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	94.86
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	94.86
PRK09135	249	pteridine reductase; Provisional	94.86
PRK08219	227	short chain dehydrogenase; Provisional	94.86
PRK08277	278	D-mannonate oxidoreductase; Provisional	94.85
PRK12742	237	oxidoreductase; Provisional	94.84
PRK07454	241	short chain dehydrogenase; Provisional	94.84
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.83
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	94.82
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	94.81
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.81
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.8
PRK05993	277	short chain dehydrogenase; Provisional	94.78
PRK05872	296	short chain dehydrogenase; Provisional	94.78
PRK07023	243	short chain dehydrogenase; Provisional	94.77
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.77
PRK06500	249	short chain dehydrogenase; Provisional	94.77
PRK07060	245	short chain dehydrogenase; Provisional	94.75
PRK09009	235	C factor cell-cell signaling protein; Provisional	94.74
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.69
PRK12320	699	hypothetical protein; Provisional	94.69
PRK07035	252	short chain dehydrogenase; Provisional	94.68
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.68
PLN02494	477	adenosylhomocysteinase	94.67
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.67
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.65
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.65
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.64
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.63
PRK06949	258	short chain dehydrogenase; Provisional	94.63
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.63
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.61
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.61
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.61
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.6
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.6
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.56
PRK12743	256	oxidoreductase; Provisional	94.55
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.55
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	94.54
PRK08324	681	short chain dehydrogenase; Validated	94.54
PRK06701	290	short chain dehydrogenase; Provisional	94.53
PRK08628	258	short chain dehydrogenase; Provisional	94.51
PRK06940	275	short chain dehydrogenase; Provisional	94.5
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.5
PRK05599	246	hypothetical protein; Provisional	94.5
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.5
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.49
PRK08862	227	short chain dehydrogenase; Provisional	94.46
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.46
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.45
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	94.45
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	94.41
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.39
PRK06436	303	glycerate dehydrogenase; Provisional	94.39
PRK14852	989	hypothetical protein; Provisional	94.39
PRK12746	254	short chain dehydrogenase; Provisional	94.38
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.38
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.38
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.36
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	94.36
PRK08264	238	short chain dehydrogenase; Validated	94.33
PRK08263	275	short chain dehydrogenase; Provisional	94.29
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	94.28
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.27
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.26
PRK12824	245	acetoacetyl-CoA reductase; Provisional	94.24
PRK07985	294	oxidoreductase; Provisional	94.24
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	94.23
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.21
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.2
PRK07877	722	hypothetical protein; Provisional	94.19
COG2344	211	AT-rich DNA-binding protein [General function pred	94.18
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.17
PRK06114	254	short chain dehydrogenase; Provisional	94.16
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.15
PRK08177	225	short chain dehydrogenase; Provisional	94.15
PLN02383	344	aspartate semialdehyde dehydrogenase	94.14
PLN03129	581	NADP-dependent malic enzyme; Provisional	94.1
PRK07109	334	short chain dehydrogenase; Provisional	94.1
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.1
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.09
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.06
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.02
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	94.01
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	93.99
PRK06398	258	aldose dehydrogenase; Validated	93.97
PRK05693	274	short chain dehydrogenase; Provisional	93.95
PRK06125	259	short chain dehydrogenase; Provisional	93.93
PLN02306	386	hydroxypyruvate reductase	93.93
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	93.91
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.9
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.88
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.85
PRK06523	260	short chain dehydrogenase; Provisional	93.83
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.82
PRK12747	252	short chain dehydrogenase; Provisional	93.82
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	93.82
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.81
PTZ00317	559	NADP-dependent malic enzyme; Provisional	93.8
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	93.8
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.79
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.72
PRK07201	657	short chain dehydrogenase; Provisional	93.7
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	93.68
PRK08703	239	short chain dehydrogenase; Provisional	93.68
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	93.65
PRK09134	258	short chain dehydrogenase; Provisional	93.63
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.63
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.62
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.6
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.6
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	93.6
PRK06953	222	short chain dehydrogenase; Provisional	93.59
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	93.59
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.57
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	93.55
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.53
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.53
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.52
PRK07577	234	short chain dehydrogenase; Provisional	93.51
PRK06153	393	hypothetical protein; Provisional	93.5
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.49
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.47
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.45
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.44
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.43

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=7e-77  Score=558.26  Aligned_cols=339  Identities=67%  Similarity=1.017  Sum_probs=319.5

Q ss_pred             hhHHHHHHhccCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc
Q 016424            8 NQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH   87 (390)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~   87 (390)
                      ++++.|.++++-+.        ...+.+...+++.||+|+||+|+||++++++|+++|++++|.|||+..+.|++.||+|
T Consensus         3 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSH   74 (345)
T KOG1494|consen    3 LKSLIRSSASLSSG--------PKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSH   74 (345)
T ss_pred             hHHHHHhhhhhccC--------CcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccc
Confidence            57788888887651        1112222478889999999999999999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHH
Q 016424           88 MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI  167 (390)
Q Consensus        88 ~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i  167 (390)
                      +++...+.+|+|..++++|+++||+|||.||+||||||+|+||++.|+.|+++++.++.++||+|.+.++|||+|.++|+
T Consensus        75 I~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPI  154 (345)
T KOG1494|consen   75 INTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPI  154 (345)
T ss_pred             cCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchH
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCC-CCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHh
Q 016424          168 AAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR  246 (390)
Q Consensus       168 ~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p-~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~  246 (390)
                      ++|++++++.|+|+|+||+|+||++|+++|+++.++++| ++++++|+|+|.+.|++|++||+++...+++++++.++.|
T Consensus       155 aaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~R  234 (345)
T KOG1494|consen  155 AAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHR  234 (345)
T ss_pred             HHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 5699999999999999999999999999999999999999


Q ss_pred             hccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCC
Q 016424          247 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLN  326 (390)
Q Consensus       247 v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls  326 (390)
                      +|.+|+||+++|+|+||+++|||+|.++|+++++++.+|++.++.|+|+.+...+-.||++|+++|++||+++..+++||
T Consensus       235 iQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~ls  314 (345)
T KOG1494|consen  235 IQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLS  314 (345)
T ss_pred             HHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccC
Confidence            99999999999999999999999999999999999999988899999998887678999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhhcccchhcchHhHHHh
Q 016424          327 EYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEM  365 (390)
Q Consensus       327 ~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~  365 (390)
                      ++|+++|+.+.    ++|+++       |+||+.|++..
T Consensus       315 d~E~~~l~~~~----~eLk~s-------I~KGv~F~~~~  342 (345)
T KOG1494|consen  315 DYEEKALEAAK----PELKKS-------IEKGVTFVKST  342 (345)
T ss_pred             HHHHHHHHHHH----HHHHHH-------HHhhHHHHhhh
Confidence            99999999877    899999       99999999864

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=4.1e-69  Score=528.60  Aligned_cols=310  Identities=58%  Similarity=0.927  Sum_probs=281.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  122 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k  122 (390)
                      ||+||||+|+||++++++|+.+++++||+|+|++++.|+++||+|......++.+++.+|++++++|||+||+++|.||+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999999999999999999999999999999998889999999987444666543333567999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHHHHh
Q 016424          123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL  202 (390)
Q Consensus       123 ~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l  202 (390)
                      |||+|+|++..|+++++++++.|.+++|++++|++|||+|++++++++++++.++||++||||+|+||++||+++||+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcc
Q 016424          203 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG  282 (390)
Q Consensus       203 ~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~  282 (390)
                      |++|++|+++||||||+++++|+||+++....+++++++++.++++++|++|+++|.|||+|+||+|.++++++++|+++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999987689999999986444666678999999999999999987688999999999999999999976


Q ss_pred             cCCCCceEEEeeeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchhcchHh
Q 016424          283 LRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLL  361 (390)
Q Consensus       283 ~~~~~~v~~~s~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~~~~  361 (390)
                      .++++.++|+++++|+| .+++|||+||++|++||++++++++|+++|+++|+.++    +.+++.       +++|++|
T Consensus       241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~----~~i~~~-------~~~g~~~  309 (312)
T TIGR01772       241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGAL----PELKKN-------IKKGEEF  309 (312)
T ss_pred             hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHH----HHHHHH-------HHHHHHH
Confidence            55556799988999998 67999999999999999999995489999999999999    455555       6788888


Q ss_pred             HH
Q 016424          362 QQ  363 (390)
Q Consensus       362 ~~  363 (390)
                      ++
T Consensus       310 ~~  311 (312)
T TIGR01772       310 VA  311 (312)
T ss_pred             hc
Confidence            75

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=1.7e-68  Score=523.62  Aligned_cols=299  Identities=68%  Similarity=1.068  Sum_probs=273.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+||||+|+||+++++.|+.+++++||+|+|++.+.|+++||+|+.....++.+.+++|++++++|||+||+|+|.||
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999999999999999999999999999999998678999999999754567754344567799999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHHHH
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  201 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~  201 (390)
                      +|||+|+|++..|+++++++++.|.+++|++|+|++|||+|++++++++++++.++||++||||+|+||++|++++||++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             hCCCCCCCceEEeecc-cCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHH
Q 016424          202 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL  280 (390)
Q Consensus       202 l~v~p~~V~~~ViG~H-g~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl  280 (390)
                      +|+++++|+++||||| |+ +++|+||++.+...+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|+
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl  239 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL  239 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 77 999999999875556666789999999999999999877889999999999999999999


Q ss_pred             cccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          281 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       281 ~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      +|.++++.+++|++++++-.+++|||+||++|++|+++++++++|+++|+++|++++..|+
T Consensus       240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~  300 (310)
T cd01337         240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELK  300 (310)
T ss_pred             HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            8876666788888877653568999999999999999999963599999999999995443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=8.5e-67  Score=507.74  Aligned_cols=291  Identities=37%  Similarity=0.550  Sum_probs=262.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||+|||| |+||++++++|.++++.+||+|||+++  ++|.++||+|+.+.  ..+++.. +.+ +++++|||+||+++
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence            59999999 999999999997788888999999997  79999999998743  3455542 245 58899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~  196 (390)
                      |.||||||+|+||+..|+.|+++++++|.++|||++++++|||+|++||++    ++.+++|++|+||. |.||++||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876    88999999999999 8999999999


Q ss_pred             HHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-------C-CCHHHHHHHHHhhccchhhhHhhhccCCchhHHH
Q 016424          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------S-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  268 (390)
Q Consensus       197 ~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-------~-~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~  268 (390)
                      +||+++|+++++|+++|+|+||+ +++|+||++++.+       . .++++++++.++|+++|++|+++| |.| |+||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999999 9999999999854       1 334678899999999999999988 555 99999


Q ss_pred             HHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHh
Q 016424          269 AYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGE  346 (390)
Q Consensus       269 A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~  346 (390)
                      |.|+++++++|++|.+   .++|++ |++|+| .+++||++|+++|++|+++++++ +|+++|+++|+.++..++..++.
T Consensus       231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~  306 (313)
T COG0039         231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL  306 (313)
T ss_pred             HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999873   588887 899999 78999999999999999999996 99999999999999544444433

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=1.1e-64  Score=499.10  Aligned_cols=316  Identities=76%  Similarity=1.164  Sum_probs=286.9

Q ss_pred             hhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC
Q 016424           30 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG  109 (390)
Q Consensus        30 ~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d  109 (390)
                      .+.|+..++.++.||+||||+|+||+++++.|+++++++||+|+|++++.++++||+|+.....++.+++++|++++++|
T Consensus         7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~   86 (323)
T PLN00106          7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKG   86 (323)
T ss_pred             hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCC
Confidence            45666666778889999999999999999999999999999999999888999999998865577765567788999999


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccc
Q 016424          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  189 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~L  189 (390)
                      ||+||+++|.|++||++|++++..|+.+++++++++.+++|+++++++|||+|.+++++++++++.+++||+|+||+|.|
T Consensus        87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L  166 (323)
T PLN00106         87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL  166 (323)
T ss_pred             CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999777777777899999999999999889


Q ss_pred             cHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424          190 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  269 (390)
Q Consensus       190 ds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A  269 (390)
                      |++||++++|+++|+++.+|+++|+||||+++++|+||++.+...+++++++++.++++++|++|++.|.|||+|+||+|
T Consensus       167 Ds~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a  246 (323)
T PLN00106        167 DVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA  246 (323)
T ss_pred             hHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH
Confidence            99999999999999999999999999997769999999997654466777999999999999999997657899999999


Q ss_pred             HHHHHHHHHHHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424          270 YAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG  345 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~  345 (390)
                      .++++++++|++|+++++.++||++++++|.+++|||+||+||++|+++++++++|+++|+++|+.++..|++.++
T Consensus       247 ~a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        247 YAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             HHHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999998877777999998887764349999999999999999999659999999999999976665543

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=7.8e-64  Score=490.89  Aligned_cols=285  Identities=25%  Similarity=0.368  Sum_probs=257.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-C--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-G--AVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~--~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ||+|||| |+||++++++|+.+++++||+|+|+++  ++|+++||+|... .  ..+++++  +| +++++|||+||+|+
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence            8999999 999999999999999999999999988  7999999999653 2  2566654  45 58899999999999


Q ss_pred             CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          118 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       118 g~p~k~g~~--r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      |.||||||+  |+|++..|+++++++++.|.+++|++++|++|||+|++|+++    ++.++||++||||+ |.||++||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999999866    78889999999999 89999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC----------CCHHHHHHHHHhhccchhhhHhhhccCCch
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~----------~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t  264 (390)
                      +++||+++|++|++|+++||||||+ +++|+||++++.+.          .++.+++++.++++++|++|++.   ||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCee
Confidence            9999999999999999999999998 99999999987531          12335789999999999999994   5899


Q ss_pred             hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424          265 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD  342 (390)
Q Consensus       265 ~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~  342 (390)
                      +|++|.++++++++|++|.+   .+++++ +++|+| ++++|||+||+||++|+++++++ +|+++|+++|++++..|++
T Consensus       229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~  304 (307)
T cd05290         229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE  304 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998754   488886 789999 67999999999999999999996 9999999999999965554


Q ss_pred             H
Q 016424          343 W  343 (390)
Q Consensus       343 ~  343 (390)
                      .
T Consensus       305 ~  305 (307)
T cd05290         305 T  305 (307)
T ss_pred             H
Confidence            3

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=6.5e-63  Score=486.21  Aligned_cols=314  Identities=60%  Similarity=0.927  Sum_probs=278.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-++.||+||||+|+||+++++.|+.++..+||+|+|++.+.++++||+|......+..++...+.+++++|||+||+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            45678999999999999999999999999999999999558999999999775444554322134368999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF  197 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~  197 (390)
                      |.|+++|++|.+++..|++++++++++|.+++|+++++++|||+|++++++.+.+++.+++||+|+||+++|||+||+++
T Consensus        85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~  164 (321)
T PTZ00325         85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF  164 (321)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998765567899999999999978999999999


Q ss_pred             HHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHH
Q 016424          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  277 (390)
Q Consensus       198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~  277 (390)
                      ||+++|++|++|+++||||||+.+++|+||++..  ++++++++++.++++++|++|++.|+|||+|+||+|++++++++
T Consensus       165 la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~  242 (321)
T PTZ00325        165 VAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWST  242 (321)
T ss_pred             HHHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Confidence            9999999999999999999998569999999944  46677799999999999999999887789999999999999999


Q ss_pred             HHHcccCCCCceEEEeeeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchh
Q 016424          278 ACLRGLRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHS  356 (390)
Q Consensus       278 aIl~~~~~~~~v~~~s~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~  356 (390)
                      +|++|.++++.++++++++|+| .+++|+|+||+||++|+++++++++|+++|+++|+.++.    .+++.       ++
T Consensus       243 ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~----~i~~~-------~~  311 (321)
T PTZ00325        243 SVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVP----DLKKN-------IE  311 (321)
T ss_pred             HHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHH----HHHHH-------HH
Confidence            9998865566788999999999 579999999999999999999833999999999999995    44444       56


Q ss_pred             cchHhHHH
Q 016424          357 KGHLLQQE  364 (390)
Q Consensus       357 ~~~~~~~~  364 (390)
                      +|+.|++.
T Consensus       312 ~~~~~~~~  319 (321)
T PTZ00325        312 KGLEFARK  319 (321)
T ss_pred             HHHHHHhc
Confidence            77777764

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-62  Score=482.98  Aligned_cols=309  Identities=55%  Similarity=0.850  Sum_probs=276.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |||+||||+|+||+++++.+.. .+...+|+|+|+++ ..++++|++|......++.+. .+|++++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~-~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFS-GEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeC-CCCHHHHcCCCCEEEEcCCC
Confidence            7999999999999999998866 57788999999987 678889999864223555422 45777999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHH
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  199 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la  199 (390)
                      |+++|++|.+++.+|++++++++++|.+++|+++++++|||+|++|+++++.+++.+++|++||||+|+||++|++++||
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999889999999999999998899999999999


Q ss_pred             HHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHH
Q 016424          200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC  279 (390)
Q Consensus       200 ~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aI  279 (390)
                      +++|++|++|+++||||||+++++|+||++ .+.++++++++++.++++++|++|+++|.|+|+|+||+|.++++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999877999999999 3335677779999999999999999987778999999999999999999


Q ss_pred             HcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchhcch
Q 016424          280 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGH  359 (390)
Q Consensus       280 l~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~~  359 (390)
                      ++++++++.++|+++++|+-.+++|||+||+||++|+++++++++|+++|+++|+.++.    .+++.       +++|.
T Consensus       239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~----~i~~~-------~~~g~  307 (312)
T PRK05086        239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLD----TLKKD-------IALGE  307 (312)
T ss_pred             HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHH----HHHHH-------HHHHH
Confidence            99876666799988887763468999999999999999999966999999999999994    55555       67777


Q ss_pred             HhHH
Q 016424          360 LLQQ  363 (390)
Q Consensus       360 ~~~~  363 (390)
                      .|.+
T Consensus       308 ~~~~  311 (312)
T PRK05086        308 EFVN  311 (312)
T ss_pred             Hhhc
Confidence            7765

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.2e-62  Score=483.72  Aligned_cols=290  Identities=23%  Similarity=0.322  Sum_probs=259.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .+||+|||| |+||+++++.|+..++++||+|||+++  +.|+++||+|+.. ....++. +++|+ ++++|||+||+++
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence            469999998 999999999999999999999999987  7999999999873 2212333 24576 5699999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~  196 (390)
                      |.|++|||+|+|++.+|+++++++++.|+++||++|+|++|||+|++++++    ++.+++|++||||+ |.||++|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998654    78889999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccCCch
Q 016424          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (390)
Q Consensus       197 ~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t  264 (390)
                      +||+++++++++|+++||||||+ +++|+||++++.+            ..++++++++.++++++|++|++.   ||+|
T Consensus       156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t  231 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYT  231 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence            99999999999999999999998 9999999998853            122355899999999999999994   5899


Q ss_pred             hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          265 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       265 ~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      +|++|+++++++++|++|.+   .+++++ +++|+|  +++++||+||+||++|+++++++ +|+++|+++|+.++..|+
T Consensus       232 ~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~  307 (312)
T cd05293         232 SWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLW  307 (312)
T ss_pred             hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            99999999999999998764   477776 789988  47999999999999999999996 999999999999997666


Q ss_pred             HHHH
Q 016424          342 DWLG  345 (390)
Q Consensus       342 ~~l~  345 (390)
                      +.++
T Consensus       308 ~~~~  311 (312)
T cd05293         308 EVQK  311 (312)
T ss_pred             HHhh
Confidence            6553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=1.8e-62  Score=483.94  Aligned_cols=293  Identities=27%  Similarity=0.370  Sum_probs=258.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENAL  107 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al  107 (390)
                      +++.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||+|+.+  ...+++.  +++ ++++
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~   77 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF   77 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence            468899999988999999999999999999     999999954    6999999999872  1234443  234 6899


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCceee
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG  185 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG  185 (390)
                      +|||+||+|+|.||||||+|+|++..|+++++++++.|.++|| +++++++|||+|++|+++    ++.+ +||++||||
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG  153 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSA  153 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEE
Confidence            9999999999999999999999999999999999999999998 999999999999999876    6778 999999999


Q ss_pred             cccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCCC----C-CCHHH--HHHHHHhhccchhhhHhh
Q 016424          186 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEA  257 (390)
Q Consensus       186 ~t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~~----~-~~~~~--~~~l~~~v~~~~~eIi~~  257 (390)
                      +|.||++|||++||+++|++|++|+ .+||||||+ +++|+||++++.+    . ++++.  +++|.+++++++++|++.
T Consensus       154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~  232 (323)
T TIGR01759       154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEA  232 (323)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhc
Confidence            9999999999999999999999995 679999998 9999999998853    1 33333  689999999999999995


Q ss_pred             hccCCchhH-HHHHHHHHHHHHHHcccCCCCceEEEe-eeeC-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHH
Q 016424          258 KAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYESG  331 (390)
Q Consensus       258 k~gkg~t~~-s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~-l~~Ls~~E~~  331 (390)
                         ||+|+| ++|.++++++++|++|++. +.+++|+ +++| +|  ++++|||+||++|++|++++++ + +|+++|++
T Consensus       233 ---kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~  307 (323)
T TIGR01759       233 ---RGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRG  307 (323)
T ss_pred             ---cCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHH
Confidence               478988 5889999999999998732 2489998 8899 88  4799999999999999999998 6 99999999


Q ss_pred             HHHHhHHHHHHHH
Q 016424          332 LFCLLHLCFQDWL  344 (390)
Q Consensus       332 ~L~~~~~~i~~~l  344 (390)
                      +|+.++..|+...
T Consensus       308 ~l~~sa~~lk~~~  320 (323)
T TIGR01759       308 KLDATEDELLEEK  320 (323)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999996554443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=4.9e-62  Score=485.10  Aligned_cols=291  Identities=23%  Similarity=0.358  Sum_probs=260.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +||+|||| |+||+++++.|+.+++++||+|+|+++  +.|+++||+|+.. ....++.. ++|+ ++++|||+||+++|
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCCH-HHhCCCCEEEECCC
Confidence            79999999 999999999999999999999999988  7999999999863 22344432 3465 67999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~  197 (390)
                      .||+|||+|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++    ++.++||++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    67778999999999 68999999999


Q ss_pred             HHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      ||+++|+++++|+++||||||+ +++|+||++++.+            .+++++++++.++++++|++|++.   ||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence            9999999999999999999998 9999999997732            134456889999999999999994   58999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-C--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T--ELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~--~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      |++|.++++++++|++|.+   .+++++ +++|+| .  +++|||+||+||++|+++++++ +|+++|+++|++++..|+
T Consensus       267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~  342 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW  342 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999875   488998 679998 3  6899999999999999999996 999999999999997777


Q ss_pred             HHHHhh
Q 016424          342 DWLGES  347 (390)
Q Consensus       342 ~~l~~~  347 (390)
                      +.+++.
T Consensus       343 ~~~~~~  348 (350)
T PLN02602        343 EVQSQL  348 (350)
T ss_pred             HHHHHh
Confidence            665543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=4.2e-61  Score=473.53  Aligned_cols=292  Identities=24%  Similarity=0.389  Sum_probs=263.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ++.+||+|||| |+||++++++|+..++++||+|+|+++  ++|+++||.|+... ..+++.+  ++ +++++|||+||+
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivIi   79 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVVI   79 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEEE
Confidence            45679999999 999999999999999999999999987  78999999998632 3556543  45 478999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.||+|||+|.|++..|+++++++++.+.+++|++|++++|||+|++++++    ++.+++|++||||+ |.||++|+
T Consensus        80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~  155 (315)
T PRK00066         80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARF  155 (315)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998755    66789999999999 78999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----------CCCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~  263 (390)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+           .+++++++++.+++++++++|++.   ||+
T Consensus       156 ~~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~  231 (315)
T PRK00066        156 RYMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGA  231 (315)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCe
Confidence            9999999999999999999999998 9999999998853           244567889999999999999994   589


Q ss_pred             hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      ++|++|+++++++++|+++.+   .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++++..|+
T Consensus       232 t~~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~  307 (315)
T PRK00066        232 TYYGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLK  307 (315)
T ss_pred             ehHHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999754   588887 789999 67999999999999999999996 999999999999997666


Q ss_pred             HHHHh
Q 016424          342 DWLGE  346 (390)
Q Consensus       342 ~~l~~  346 (390)
                      ..+++
T Consensus       308 ~~~~~  312 (315)
T PRK00066        308 EIMDE  312 (315)
T ss_pred             HHHHH
Confidence            65543

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.5e-61  Score=473.43  Aligned_cols=280  Identities=24%  Similarity=0.408  Sum_probs=252.7

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        46 VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|+...  ..+++..  +| +++++|||+||+++|.||
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCC
Confidence            6899 999999999999999999999999987  79999999998632  3455542  45 588999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHHH
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE  200 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la~  200 (390)
                      +|||+|+|++.+|+++++++++.|.+++|++++|++|||+|++|+++    ++.+++|++||||+ |.||++|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998765    77889999999999 88999999999999


Q ss_pred             HhCCCCCCCceEEeecccCceeeeccccCCCCC----CC-------CHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424          201 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----SF-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  269 (390)
Q Consensus       201 ~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~~-------~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A  269 (390)
                      ++|++|++|+++||||||+ +++|+||++++.+    .+       ++.+++++.++++++|++|++.   ||+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHH
Confidence            9999999999999999998 9999999998743    11       2335789999999999999994   589999999


Q ss_pred             HHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          270 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      .++++++++|++|.+   .++||+ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|++++..|+
T Consensus       229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik  298 (299)
T TIGR01771       229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLK  298 (299)
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHh
Confidence            999999999999864   589997 889999 56899999999999999999995 999999999999986543

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=6e-61  Score=448.80  Aligned_cols=292  Identities=22%  Similarity=0.342  Sum_probs=265.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC---CCeEEEEeCCCChhhhhCCCcE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~---~~~v~~~~~t~dl~~al~dADi  112 (390)
                      ..+..||+|+|+ |.||.++++.+..+++.+||+|+|.++  ++|.+|||+|...   .+++..   .+|+ .+.+|+|+
T Consensus        17 ~~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~l   91 (332)
T KOG1495|consen   17 EFKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKL   91 (332)
T ss_pred             cccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcE
Confidence            344679999999 999999999999999999999999998  8999999999762   355554   3575 77999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  191 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds  191 (390)
                      ||+|||..+++|++|++++++|+.+++.+.+++.+|.||++++++|||+|++||++    |+.++||++||||. |+||+
T Consensus        92 vIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDs  167 (332)
T KOG1495|consen   92 VIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDS  167 (332)
T ss_pred             EEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccH
Confidence            99999999999999999999999999999999999999999999999999999865    99999999999999 99999


Q ss_pred             HHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhc
Q 016424          192 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKA  259 (390)
Q Consensus       192 ~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~  259 (390)
                      +|||.+++++||++|+++++||+||||+ +.+|+||.+.+.+            ..+++.|+++-+++.+.++||++.| 
T Consensus       168 aRFryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK-  245 (332)
T KOG1495|consen  168 ARFRYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK-  245 (332)
T ss_pred             HHHHHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999999999999999999999 8999999987632            3567789999999999999999975 


Q ss_pred             cCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHh
Q 016424          260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLL  336 (390)
Q Consensus       260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~  336 (390)
                        |+|.|++|..+++++++|++|++   .+.+++ .++|.|  .+++|+|+||++|++|+..++.. +|+++|.++|.++
T Consensus       246 --GyTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kS  319 (332)
T KOG1495|consen  246 --GYTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKS  319 (332)
T ss_pred             --CchHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHH
Confidence              89999999999999999999986   378887 679998  56999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q 016424          337 HLCFQDWLGESEER  350 (390)
Q Consensus       337 ~~~i~~~l~~~~~~  350 (390)
                      +.    .|.++++.
T Consensus       320 a~----tl~~~q~~  329 (332)
T KOG1495|consen  320 AK----TLLEAQKS  329 (332)
T ss_pred             HH----HHHHHHHh
Confidence            94    55555443

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-60  Score=468.35  Aligned_cols=294  Identities=22%  Similarity=0.289  Sum_probs=257.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENAL  107 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al  107 (390)
                      ++++||+||||+|.||+++++.|.+.++++     ||+|+|+++    ++|+++||+|+.+  ...+++.  +++ ++++
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~   78 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF   78 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence            578899999988999999999999999888     999999954    6899999999862  1345553  234 6899


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCceee
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG  185 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG  185 (390)
                      +|||+||+++|.||+|||+|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++.+ +||++||||
T Consensus        79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG  154 (326)
T PRK05442         79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTA  154 (326)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEe
Confidence            999999999999999999999999999999999999999988 8999999999999999876    5666 999999999


Q ss_pred             cccccHHHHHHHHHHHhCCCCCCCceE-EeecccCceeeeccccCCCCCC-----CCHHH--HHHHHHhhccchhhhHhh
Q 016424          186 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVEA  257 (390)
Q Consensus       186 ~t~Lds~R~~~~la~~l~v~p~~V~~~-ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~--~~~l~~~v~~~~~eIi~~  257 (390)
                      +|.||++||+++||++|+++|++|+++ ||||||+ +++|+||++++.+.     +++++  ++++.+++++++++|++.
T Consensus       155 ~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~  233 (326)
T PRK05442        155 MTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA  233 (326)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC
Confidence            999999999999999999999999986 5999999 99999999998641     33433  678999999999999994


Q ss_pred             hccCCchhHHHHHH-HHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 016424          258 KAGAGSATLSMAYA-AVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF  333 (390)
Q Consensus       258 k~gkg~t~~s~A~a-~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L  333 (390)
                         ||+|+|++|.+ +++++++|++|.+ ++.+++|+ +++|+|  ++++|||+||++| +|+++++...+|+++|+++|
T Consensus       234 ---kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l  308 (326)
T PRK05442        234 ---RGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKI  308 (326)
T ss_pred             ---cCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHH
Confidence               58999999999 5999999999852 22488998 679999  4899999999999 99999965239999999999


Q ss_pred             HHhHHHHHHHHH
Q 016424          334 CLLHLCFQDWLG  345 (390)
Q Consensus       334 ~~~~~~i~~~l~  345 (390)
                      ++++..|+.+..
T Consensus       309 ~~s~~~l~~~~~  320 (326)
T PRK05442        309 DATLAELEEERD  320 (326)
T ss_pred             HHHHHHHHHHHH
Confidence            999965554443

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-59  Score=460.98  Aligned_cols=295  Identities=31%  Similarity=0.497  Sum_probs=263.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      .+.+||+|||| |+||+++++.++..++ .+|+|||+++  +.|.++|+.|....  ...++. +++|+ ++++|||+||
T Consensus         3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEE
Confidence            45679999999 9999999999999886 6899999998  67999999997532  233433 24676 5899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHHH
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR  193 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~R  193 (390)
                      +++|.|+++||+|+|++..|.++++++++.|+++||++|+|++|||+|++++++    ++.+++|++|+||+| .||++|
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R  154 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSR  154 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHH
Confidence            999999999999999999999999999999999999999999999999998654    678899999999995 899999


Q ss_pred             HHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (390)
Q Consensus       194 ~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~  263 (390)
                      ++++||+++|++|++|+++|+||||+ +++|+||++++.+          .+++++++++.++++++|++|++++ |||+
T Consensus       155 ~~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~  232 (319)
T PTZ00117        155 FRCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS  232 (319)
T ss_pred             HHHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence            99999999999999999999999998 9999999998742          2556678999999999999999976 7899


Q ss_pred             hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      |+||+|+++++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|+
T Consensus       233 t~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~  308 (319)
T PTZ00117        233 AFFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQ  308 (319)
T ss_pred             hHHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999764   589998 789999 46899999999999999999996 999999999999998777


Q ss_pred             HHHHhh
Q 016424          342 DWLGES  347 (390)
Q Consensus       342 ~~l~~~  347 (390)
                      +.+++.
T Consensus       309 ~~~~~~  314 (319)
T PTZ00117        309 ELTQKA  314 (319)
T ss_pred             HHHHHH
Confidence            666544

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=1.9e-59  Score=460.13  Aligned_cols=287  Identities=24%  Similarity=0.372  Sum_probs=257.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||+|||+ |++|+++++.|+..++..+|+|+|+++  ++++++||.|+..  ...++...  .++ +++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~-~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDY-SDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCH-HHhCCCCEEEEcc
Confidence            49999999 999999999999999888999999988  6899999999753  23344432  354 6799999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~  196 (390)
                      |.||+|||+|.|++.+|+++++++++.|.++||++++|++|||+|++|+++    ++.++||++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998755    67799999999999 7899999999


Q ss_pred             HHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCchhH
Q 016424          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  266 (390)
Q Consensus       197 ~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~  266 (390)
                      +||+++|+++++|+++|||+||+ +++|+||++++.+          .+.+++++++.++++++|++|++.   ||+|+|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHH
Confidence            99999999999999999999998 9999999998743          133556889999999999999994   589999


Q ss_pred             HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424          267 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL  344 (390)
Q Consensus       267 s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l  344 (390)
                      ++|.++++++++|+++.+   .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++++..|++.+
T Consensus       229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~  304 (306)
T cd05291         229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI  304 (306)
T ss_pred             HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999754   588887 789999 67999999999999999999996 999999999999997666554

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2e-59  Score=458.95  Aligned_cols=285  Identities=28%  Similarity=0.411  Sum_probs=256.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      |+|||+ |+||+++++.++.+++++||+|+|+++  +.|+++||+|+... ...+++. ++| +++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence            689999 999999999999999999999999988  79999999998643 3344443 346 47899999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHH
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA  199 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la  199 (390)
                      ++|||+|.+++.+|+++++++++.|+++||++|+|++|||+|++++++    ++++++|++||||+ |.||++|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998754    78889999999999 7899999999999


Q ss_pred             HHhCCCCCCCceEEeecccCceeeeccccCCCCC-C------CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHH
Q 016424          200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA  272 (390)
Q Consensus       200 ~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-~------~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~  272 (390)
                      +++++++++|+++|+||||+ +++|+||++++.+ +      .+++.++++.+++++++++|++.   ||+++|++|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence            99999999999999999998 9999999998753 1      13456889999999999999994   589999999999


Q ss_pred             HHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424          273 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW  343 (390)
Q Consensus       273 ~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~  343 (390)
                      ++++++|+++.+   .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++++..|+..
T Consensus       230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~  298 (300)
T cd00300         230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEV  298 (300)
T ss_pred             HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHH
Confidence            999999999754   588998 679999 67999999999999999999995 99999999999999655543

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=1.2e-59  Score=464.14  Aligned_cols=289  Identities=27%  Similarity=0.355  Sum_probs=254.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dA  110 (390)
                      .||+||||+|+||+++++.|+++++++     +|+|+|+++    ++|+++||.|+.+  ...+++.  + +.+++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~-~~~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--T-DPEEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--c-ChHHHhCCC
Confidence            489999999999999999999999888     599999985    6899999999852  2234432  2 336999999


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCC-CCCCceeeccc
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM  188 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~-~p~~kviG~t~  188 (390)
                      |+||+++|.|++|||+|+|++..|+++++++++.|.++| |++++|++|||+|++|+++    ++.++ +|++||||+|.
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~  153 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTR  153 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeH
Confidence            999999999999999999999999999999999999996 9999999999999999865    67788 59999999999


Q ss_pred             ccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCCC---------CCHH-HHHHHHHhhccchhhhHhh
Q 016424          189 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEA  257 (390)
Q Consensus       189 Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~~---------~~~~-~~~~l~~~v~~~~~eIi~~  257 (390)
                      ||++|||++||++++++|++| +++||||||+ +++|+||++++.+.         ++++ ..++|.+++++++++|++.
T Consensus       154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~  232 (323)
T cd00704         154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK  232 (323)
T ss_pred             HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence            999999999999999999999 5699999999 99999999987531         3332 3578999999999999995


Q ss_pred             hccCCchhHH-HHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 016424          258 KAGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGL  332 (390)
Q Consensus       258 k~gkg~t~~s-~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~  332 (390)
                         ||+++|+ +|+++++++++|++|.+++ .++||+ +++|+|   ++++|||+||+||++||++++++ +|+++|+++
T Consensus       233 ---kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~  307 (323)
T cd00704         233 ---RGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREK  307 (323)
T ss_pred             ---cCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHH
Confidence               4788885 7999999999999998644 489997 789988   37999999999999999999996 999999999


Q ss_pred             HHHhHHHHHHH
Q 016424          333 FCLLHLCFQDW  343 (390)
Q Consensus       333 L~~~~~~i~~~  343 (390)
                      |++++..|+++
T Consensus       308 l~~s~~~l~~~  318 (323)
T cd00704         308 LKATEEELIEE  318 (323)
T ss_pred             HHHHHHHHHHH
Confidence            99999644443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-58  Score=455.10  Aligned_cols=292  Identities=33%  Similarity=0.560  Sum_probs=260.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      .+.+||+|||| |++|+++++.++..++ .+|+|+|+++  +.+.++|+.|...  ....++. +++|+ ++++|||+||
T Consensus         4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEE
Confidence            45679999999 9999999999998887 4699999998  5788999999742  2233443 24676 7899999999


Q ss_pred             EcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-c
Q 016424          115 IPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-M  188 (390)
Q Consensus       115 i~ag~p~k~g~-----~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~  188 (390)
                      +++|.|++||+     +|++++..|+++++++++.|+++||++|+|++|||+|++++.+    ++.+++|++|+||+| .
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~  155 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGV  155 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCc
Confidence            99999999999     9999999999999999999999999999999999999998754    788899999999995 8


Q ss_pred             ccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhh
Q 016424          189 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAK  258 (390)
Q Consensus       189 Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k  258 (390)
                      ||++|++++||+++|+++++|+++|+||||+ +++|+||++++.+          .+++++++++.++++++|++|+++|
T Consensus       156 lds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~  234 (321)
T PTZ00082        156 LDSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL  234 (321)
T ss_pred             ccHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998 9999999998743          1456678999999999999999986


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHh
Q 016424          259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLL  336 (390)
Q Consensus       259 ~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~  336 (390)
                       |||+|+||+|.++++++++|++|.+   .++||+ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|+++
T Consensus       235 -gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s  309 (321)
T PTZ00082        235 -GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDES  309 (321)
T ss_pred             -CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence             7899999999999999999999865   589998 789999 56999999999999999999996 9999999999999


Q ss_pred             HHHHHHHH
Q 016424          337 HLCFQDWL  344 (390)
Q Consensus       337 ~~~i~~~l  344 (390)
                      +..|++.+
T Consensus       310 a~~i~~~~  317 (321)
T PTZ00082        310 IKEVKRLE  317 (321)
T ss_pred             HHHHHHHH
Confidence            96555443

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=1.1e-58  Score=470.81  Aligned_cols=289  Identities=21%  Similarity=0.233  Sum_probs=255.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhC-------CCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENA  106 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~-------~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~a  106 (390)
                      .+++.||+||||+|.||+++++.|+++       +++.||+|+|+++  ++|+++||+|+.+  ...+++.  ++| +++
T Consensus        97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~  173 (444)
T PLN00112         97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV  173 (444)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence            466899999999999999999999988       7788999999998  7999999999862  2345543  345 588


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      ++|||+||+++|.||+|||+|+|++..|+++++++++.|.+ ++|++++|++|||+|++|+++    ++.++++++|+||
T Consensus       174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViG  249 (444)
T PLN00112        174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFH  249 (444)
T ss_pred             hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEE
Confidence            99999999999999999999999999999999999999999 599999999999999999865    7788999999999


Q ss_pred             c-ccccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCCC-----CCHHH--HHHHHHhhccchhhhHh
Q 016424          186 V-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVE  256 (390)
Q Consensus       186 ~-t~Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~--~~~l~~~v~~~~~eIi~  256 (390)
                      + |.||++||+.+||+++|+++++| +++||||||+ +++|+||++++.+.     +++++  +++|.++++++|++|++
T Consensus       250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~  328 (444)
T PLN00112        250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK  328 (444)
T ss_pred             eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence            9 89999999999999999999999 5699999999 99999999988541     23323  68999999999999998


Q ss_pred             hhccCCchhH-HHHHHHHHHHHHHHcccCCCCceEEEe-eeeC-CC--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHH
Q 016424          257 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIF-QLGPLNEYES  330 (390)
Q Consensus       257 ~k~gkg~t~~-s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~-~l~~Ls~~E~  330 (390)
                      .   ||+++| ++|.++++++.+|+++.+ ++.+++++ +++| +|  ++++|||+||++|++|+++++ ++ +|+++|+
T Consensus       329 ~---kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~  403 (444)
T PLN00112        329 K---WGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR  403 (444)
T ss_pred             c---cCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence            4   576776 999999999999995443 33599998 7899 48  489999999999999999999 65 9999999


Q ss_pred             HHHHHhHHH
Q 016424          331 GLFCLLHLC  339 (390)
Q Consensus       331 ~~L~~~~~~  339 (390)
                      ++|++++..
T Consensus       404 ~~l~~Sa~~  412 (444)
T PLN00112        404 ERIKKSEAE  412 (444)
T ss_pred             HHHHHHHHH
Confidence            999999953

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.2e-58  Score=456.93  Aligned_cols=292  Identities=22%  Similarity=0.284  Sum_probs=258.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~  108 (390)
                      +++||+||||+|+||+++++.|.++++++     ||+|+|+++    ++|+++||+|+.+  ...+++.  +++ +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46899999999999999999999999999     999999954    6899999999863  1345553  234 68999


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCceeec
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  186 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG~  186 (390)
                      |||+||+++|.||+|||+|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++.+ +||++||+|+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999999876    5667 5999999999


Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCce-EEeecccCceeeeccccCCCCC---C--CCHH--HHHHHHHhhccchhhhHhhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC---S--FTQE--ETEYLTNRIQNGGTEVVEAK  258 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~t~vp~~S~~~v~~---~--~~~~--~~~~l~~~v~~~~~eIi~~k  258 (390)
                      |.||++||++++|+++|+++++|++ +|||+||+ +++|+||++++.+   .  +.+.  ++++|.+++++++++|++. 
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  231 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA-  231 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC-
Confidence            9999999999999999999999998 56999998 9999999998753   1  3444  3679999999999999994 


Q ss_pred             ccCCchhHHHH-HHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424          259 AGAGSATLSMA-YAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC  334 (390)
Q Consensus       259 ~gkg~t~~s~A-~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~  334 (390)
                        ||+++|++| .++++++++|++|.+. ..+++|+ +++|+|  ++++|||+||++|++||++++++ +|+++|+++|+
T Consensus       232 --kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~  307 (322)
T cd01338         232 --RGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKID  307 (322)
T ss_pred             --cCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHH
Confidence              588999999 6999999999998852 2488887 679999  48999999999999999999996 99999999999


Q ss_pred             HhHHHHHHHH
Q 016424          335 LLHLCFQDWL  344 (390)
Q Consensus       335 ~~~~~i~~~l  344 (390)
                      +++..|+.+-
T Consensus       308 ~s~~~l~~~~  317 (322)
T cd01338         308 ATLAELLEER  317 (322)
T ss_pred             HHHHHHHHHH
Confidence            9996554443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.6e-58  Score=451.92  Aligned_cols=287  Identities=30%  Similarity=0.504  Sum_probs=257.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      |||+|||+ |.||+++++.++..++. +++|+|+++  ..|.+.|+.|...    ..+++.   ++|+ +++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence            69999999 99999999999998876 799999988  5778889887542    234443   4676 45999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|+++|++|+|++..|++++++++++|.+++|++++|++|||+|++++++    ++.+|+|++||||+ |.||++|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998765    78889999999999 57999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  269 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A  269 (390)
                      +++||++|++++++|+++||||||+ +++|+||++++.+.     +++++++++.++++++|++|+++| |||+|+|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999999 99999999988541     345568999999999999999986 7899999999


Q ss_pred             HHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424          270 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL  344 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l  344 (390)
                      .++++++++|++|.+   .++|++ +++|+| .+++|+|+||+||++||++++++ +|+++|+++|++++..|++.+
T Consensus       230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~  302 (305)
T TIGR01763       230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENC  302 (305)
T ss_pred             HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   488997 789999 57999999999999999999996 999999999999997666554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2.8e-58  Score=461.68  Aligned_cols=292  Identities=21%  Similarity=0.238  Sum_probs=254.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEE--eCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENA  106 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~--Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~a  106 (390)
                      .+++.||+||||+|.||+++++.|..+++++     +|+|+  |+++  ++|+++||.|+.+  ...+++.  +++ +++
T Consensus        41 ~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~  117 (387)
T TIGR01757        41 WKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEV  117 (387)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence            4668999999999999999999999999988     67778  5555  7999999999862  2345543  245 588


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      ++|||+||+++|.||+|||+|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++.++++++|+||
T Consensus       118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG  193 (387)
T TIGR01757       118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFH  193 (387)
T ss_pred             hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEE
Confidence            9999999999999999999999999999999999999999987 9999999999999999865    6788999999999


Q ss_pred             c-ccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCCC-C----CCHHH--HHHHHHhhccchhhhHh
Q 016424          186 V-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVE  256 (390)
Q Consensus       186 ~-t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~eIi~  256 (390)
                      + |.||++|||.+||+++++++++|+ ++||||||+ +++|+||++++.+ +    +++.+  +++|.++++++|++|++
T Consensus       194 ~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~  272 (387)
T TIGR01757       194 ALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK  272 (387)
T ss_pred             ecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh
Confidence            9 899999999999999999999995 999999998 9999999998853 1    22222  68999999999999998


Q ss_pred             hhccCCchhH-HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCC-C--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHH
Q 016424          257 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIF-QLGPLNEYES  330 (390)
Q Consensus       257 ~k~gkg~t~~-s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~-~l~~Ls~~E~  330 (390)
                      .   ||+++| ++|.++++++++|+.+.+ ++.+++++ +++|+ |  ++++|||+||++|++|+++++ ++ +|+++|+
T Consensus       273 ~---KG~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~  347 (387)
T TIGR01757       273 K---WGRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLR  347 (387)
T ss_pred             c---cCchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHH
Confidence            4   466766 999999999999995554 23588987 67996 8  479999999999999999996 75 9999999


Q ss_pred             HHHHHhHHHHHH
Q 016424          331 GLFCLLHLCFQD  342 (390)
Q Consensus       331 ~~L~~~~~~i~~  342 (390)
                      ++|+.++..|+.
T Consensus       348 ~~l~~Sa~~L~~  359 (387)
T TIGR01757       348 ERIRKSEDELLK  359 (387)
T ss_pred             HHHHHHHHHHHH
Confidence            999999964433

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.4e-57  Score=445.80  Aligned_cols=288  Identities=27%  Similarity=0.429  Sum_probs=258.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||+ |.||+++++.|+..++..+++|+|+++  +.+.++|+.|... ....+.+  ++|+ ++++|||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            69999999 999999999999999999999999988  6789999999752 2334544  3465 78999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~  197 (390)
                      .|+++|++|.+++.+|+++++++++.+.+++|+++++++|||+|++++++    ++.++||++||||+ |.||++|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    67789999999999 89999999999


Q ss_pred             HHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      ||+++++++++|+++||||||+ +++|+||++++.+            .+++++++++.+++++++++|++.   ||+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIER---KGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHc---CCccH
Confidence            9999999999999999999998 9999999998742            234456899999999999999995   58999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW  343 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~  343 (390)
                      |++|+++++++++|++|.+   .++||+ +++|+| .+++|||+||+||++|+++++++ +||++|+++|++++..|+..
T Consensus       229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~  304 (308)
T cd05292         229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA  304 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999754   589987 789999 57999999999999999999996 99999999999999766655


Q ss_pred             HH
Q 016424          344 LG  345 (390)
Q Consensus       344 l~  345 (390)
                      ++
T Consensus       305 ~~  306 (308)
T cd05292         305 IE  306 (308)
T ss_pred             Hh
Confidence            43

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.5e-56  Score=442.42  Aligned_cols=292  Identities=23%  Similarity=0.290  Sum_probs=250.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEE
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      ||+||||+|+||+++++.|.++++++     +|+|+|+++    ++|+++||.|+.....-.. ..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~-~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGV-VPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCce-eccCChHHHhCCCCEE
Confidence            69999999999999999999988875     799999954    6799999999873211112 2233546899999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  191 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds  191 (390)
                      |+++|.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++.++++|+++||+ |.||+
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999999865    67777777789999 89999


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCC-C----C----CCHHH--HHHHHHhhccchhhhHhhhc
Q 016424          192 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----S----FTQEE--TEYLTNRIQNGGTEVVEAKA  259 (390)
Q Consensus       192 ~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~-~----~----~~~~~--~~~l~~~v~~~~~eIi~~k~  259 (390)
                      +|||++||+++|++|++|+ ++||||||+ +++|+||++++. +    +    +++++  ++++.+++++++++|++.| 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999996 699999999 999999999886 4    1    22222  5789999999999999964 


Q ss_pred             cCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCC-C--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424          260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL  335 (390)
Q Consensus       260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~  335 (390)
                       +|++.|++|.++++++++|+++.+ ++.++||+ +++|+ |  ++++|||+||++|++|++.+.++ +|+++|+++|+.
T Consensus       234 -~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~  310 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLAL  310 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHH
Confidence             358999999999999999995443 33599998 77999 8  47999999999997777777776 999999999999


Q ss_pred             hHHHHHHHH
Q 016424          336 LHLCFQDWL  344 (390)
Q Consensus       336 ~~~~i~~~l  344 (390)
                      ++..|+...
T Consensus       311 s~~~lk~~~  319 (324)
T TIGR01758       311 TAKELEEER  319 (324)
T ss_pred             HHHHHHHHH
Confidence            996555444

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=7.6e-56  Score=437.79  Aligned_cols=292  Identities=23%  Similarity=0.297  Sum_probs=254.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~  108 (390)
                      ++.||+|+||+|+||+++++.|..+++++     ||+|+|+++    +.++++|+.|+.+  ..+++.   +++++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            46899999999999999999999988775     999999964    5788999999752  234443   357779999


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh-CCCCCCceeec
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV  186 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~-s~~p~~kviG~  186 (390)
                      |||+||++||.|+++|++|.+++..|+.+++++++.|.+++ |++++|++|||+|++|+++    ++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 7999999999999999866    555 5777777 888


Q ss_pred             -ccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCC----CC-----CCHHH--HHHHHHhhccchhh
Q 016424          187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----CS-----FTQEE--TEYLTNRIQNGGTE  253 (390)
Q Consensus       187 -t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~----~~-----~~~~~--~~~l~~~v~~~~~e  253 (390)
                       |.||++||+++||+++++++++|+ .+||||||+ +++|+||++++.    +.     +++++  +++|.+++++++++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~  231 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA  231 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence             899999999999999999999996 569999999 999999999886    31     22222  58999999999999


Q ss_pred             hHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHH
Q 016424          254 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYES  330 (390)
Q Consensus       254 Ii~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~  330 (390)
                      |++.|  +|+|.|++|.++++++++|++|.+ ++.+++++ +++|+|  ++++|||+||++|++||++++++ +|+++|+
T Consensus       232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~  307 (325)
T cd01336         232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSR  307 (325)
T ss_pred             HHHcc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHH
Confidence            99964  479999999999999999999853 23589997 679999  48999999999999999999996 9999999


Q ss_pred             HHHHHhHHHHHHHH
Q 016424          331 GLFCLLHLCFQDWL  344 (390)
Q Consensus       331 ~~L~~~~~~i~~~l  344 (390)
                      ++|+.++..|+++.
T Consensus       308 ~~l~~s~~~l~~e~  321 (325)
T cd01336         308 EKIDATAKELVEEK  321 (325)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999996555544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=3.6e-55  Score=428.66  Aligned_cols=286  Identities=34%  Similarity=0.553  Sum_probs=255.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |+|||| |.||+++++.++++++. +|+|+|+++  +.+.++|+.|...  ....++.. ++|+ ++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-TNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-cCCH-HHhCCCCEEEEecCC
Confidence            689999 99999999999999877 999999998  5788889888642  12233332 4575 779999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHHHHHHHH
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFV  198 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~R~~~~l  198 (390)
                      |+++|++|++++.+|++++++++++|+++||++++|++|||+|++++++    ++++++|++|+||+| .||++|++++|
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765    678899999999995 79999999999


Q ss_pred             HHHhCCCCCCCceEEeecccCceeeeccccCCCCC-C----CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHH
Q 016424          199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV  273 (390)
Q Consensus       199 a~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~  273 (390)
                      |++|++++++|+++|+|+||+ +++|+||++++.+ +    +++++++++.+++++++++|++.| |+|+|+|++|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            999999999999999999998 9999999998853 1    345568999999999999999987 78999999999999


Q ss_pred             HHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424          274 KFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW  343 (390)
Q Consensus       274 ~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~  343 (390)
                      +++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|++.
T Consensus       231 ~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~  298 (300)
T cd01339         231 EMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKEL  298 (300)
T ss_pred             HHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence            99999999754   588998 789999 46999999999999999999996 99999999999999655543

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=6.5e-55  Score=427.55  Aligned_cols=291  Identities=32%  Similarity=0.559  Sum_probs=258.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      |+||+|||| |.+|+++++.++..++. +|+|+|+++  +++.++|+.|...  ....++. .++|+ ++++|||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence            579999999 99999999999998877 999999988  6788899988642  1223332 24676 779999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~  195 (390)
                      +|.|+++|++|++++.+|+++++++++.|.+++|++|+|++|||+|++|+++    ++++++|++||||+ |.||++||+
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999765    67889999999999 589999999


Q ss_pred             HHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-C----CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHH
Q 016424          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY  270 (390)
Q Consensus       196 ~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~  270 (390)
                      ++||+++++++++|+++|+|+||+ +++|+||++++.+ +    ++++.++++.+++++++.+|++.+ +||++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            999999999999999999999998 9999999998742 1    455567899999999999999974 56899999999


Q ss_pred             HHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424          271 AAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG  345 (390)
Q Consensus       271 a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~  345 (390)
                      ++++++++|+.|.+   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++++..|++.++
T Consensus       232 ~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~  304 (307)
T PRK06223        232 SIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIE  304 (307)
T ss_pred             HHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999998754   488887 789988 57999999999999999999996 9999999999999976665554

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=1.2e-54  Score=426.64  Aligned_cols=290  Identities=26%  Similarity=0.439  Sum_probs=256.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      |||+|+||+|.+|+++++.++..++.++|+|+|+++    +.+.++|+.|...  ....+... ++|+ ++++|||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d~-~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSDL-SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCCH-HHhCCCCEEEE
Confidence            699999988999999999999999989999999954    5889999998642  22233332 4564 67999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++    ++.+++|++|+||+ |.||++|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999765    67788999999999 68999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-------CCCHHHHHHHHHhhccchhhhHhhhccCCchhHH
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  267 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s  267 (390)
                      +++||+++++++++|+++|+||||+ +++|+||++++.+       ...+.+++++.++++++|++|++.|   |++.||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence            9999999999999999999999999 9999999998853       1224567899999999999999954   778999


Q ss_pred             HHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424          268 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL  344 (390)
Q Consensus       268 ~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l  344 (390)
                      +|.++++++++|++|++   .+++++ +++|+|  .+++++|+||+||++|+++++++ +|+++|+++|++++..|++.+
T Consensus       231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~  306 (309)
T cd05294         231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYT  306 (309)
T ss_pred             HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999865   488887 678887  24899999999999999999996 999999999999997776655


Q ss_pred             H
Q 016424          345 G  345 (390)
Q Consensus       345 ~  345 (390)
                      +
T Consensus       307 ~  307 (309)
T cd05294         307 R  307 (309)
T ss_pred             h
Confidence            4

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=5.5e-54  Score=420.89  Aligned_cols=262  Identities=21%  Similarity=0.312  Sum_probs=231.0

Q ss_pred             EEEEEeCCc----hHHHHHHHhcccC-C-CeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 016424           69 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC  142 (390)
Q Consensus        69 eL~L~Di~~----~~g~a~DL~~~~~-~-~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia  142 (390)
                      .|+|+|+++    ++|+++||.|+.. . ..++.   ++|.+++++|||+||+++|.||+|||+|.+++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            799999976    6899999999862 1 23432   3454699999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHHHHhCCCCCCC-ceEEeecccC
Q 016424          143 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG  219 (390)
Q Consensus       143 ~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~  219 (390)
                      +.|.++ +|+|++|++|||+|++|+++    ++.+++|++|+||+ |.||++|||++||+++|+++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999866    67789999999999 89999999999999999999999 6999999999


Q ss_pred             ceeeeccccCCC----CC-C----CCHHH--HHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCc
Q 016424          220 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAG  288 (390)
Q Consensus       220 ~t~vp~~S~~~v----~~-~----~~~~~--~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~  288 (390)
                       +++|+||++++    .+ +    +.+++  .+++.++++++|++|+++|  ||+|+||+|.++++++++|+++.+ ++.
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence             99999999988    32 1    23333  6889999999999999963  579999999999999999999642 235


Q ss_pred             eEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424          289 VVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD  342 (390)
Q Consensus       289 v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~  342 (390)
                      +++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|+.++..|+.
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~  299 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKE  299 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            89998 789999  48999999999999999999996 9999999999999964443

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=2.5e-53  Score=431.68  Aligned_cols=285  Identities=15%  Similarity=0.119  Sum_probs=247.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----cEEEEEeCC--c--hHHHHHHHhcccCC--CeEEEEeCCCChhhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDTG--AVVRGFLGQPQLENA  106 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~-----~eL~L~Di~--~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~a  106 (390)
                      .+++.+|+|.||+|.+|+++.+.++....+     -.|+|+|+.  .  ++|+++||.|+.+.  ..+++++  ++ +++
T Consensus       120 ~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~--~~-~ea  196 (452)
T cd05295         120 KINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT--DL-DVA  196 (452)
T ss_pred             CCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE--CC-HHH
Confidence            566789999999999999999999986432     369999994  4  79999999998732  2455543  34 699


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCce
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKL  183 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p--~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kv  183 (390)
                      ++|||+||+++|.||+|||+|.|++..|++++++++++|.+++|  ++++|+.|||+|++|+++    ++.+ ++|++||
T Consensus       197 ~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rV  272 (452)
T cd05295         197 FKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNI  272 (452)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHE
Confidence            99999999999999999999999999999999999999999999  899999999999999876    4445 9999999


Q ss_pred             eecccccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCC-------------C----CCHHH--HHHH
Q 016424          184 LGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYL  243 (390)
Q Consensus       184 iG~t~Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~-------------~----~~~~~--~~~l  243 (390)
                      ||+++||++|++++||+++|+++++| +++||||||+ ++||+||++++.+             +    +.+++  .+++
T Consensus       273 ig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~  351 (452)
T cd05295         273 IAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEF  351 (452)
T ss_pred             EEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHH
Confidence            99987899999999999999999999 6799999999 9999999998743             1    22333  3567


Q ss_pred             HHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEc
Q 016424          244 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIF  320 (390)
Q Consensus       244 ~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~  320 (390)
                      .+.+++++.   +   +||+|.||+|.|+++++++|++|.+.. .+++++ +++|+|  +++++||+||++|++|++.+.
T Consensus       352 ~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~  424 (452)
T cd05295         352 VATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVT  424 (452)
T ss_pred             HHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEe
Confidence            888888876   2   568999999999999999999997522 488887 789999  589999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhHH
Q 016424          321 QLGPLNEYESGLFCLLHL  338 (390)
Q Consensus       321 ~l~~Ls~~E~~~L~~~~~  338 (390)
                      ++ +|+++|+++|+.++.
T Consensus       425 ~L-~L~e~E~~kL~~S~~  441 (452)
T cd05295         425 DL-ELSEILREVLKRITS  441 (452)
T ss_pred             CC-CCCHHHHHHHHHHHH
Confidence            96 999999999999985

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=1.5e-52  Score=411.68  Aligned_cols=266  Identities=20%  Similarity=0.246  Sum_probs=229.7

Q ss_pred             EEEEEeCCc----hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 016424           69 VLHLYDVVN----TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE  143 (390)
Q Consensus        69 eL~L~Di~~----~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~  143 (390)
                      .|+|+|+++    ++|+++||.|+.. ..+....  ++|++++++|||+||+|+|.||+|||+|.|++..|+++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            799999977    6899999999872 2223333  35777899999999999999999999999999999999999999


Q ss_pred             HHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHHHHhCCCCCCCce-EEeecccCc
Q 016424          144 GIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGV  220 (390)
Q Consensus       144 ~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~  220 (390)
                      .|.+++| ++++|++|||+|++|+++.   ++.++||++ +||+ |.||++||+++||++++++|++|+. +||||||+ 
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-  169 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-  169 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence            9999995 5889999999999998652   588999998 9999 8999999999999999999999965 59999999 


Q ss_pred             eeeeccccCCC--CC-C------CCHH-HHHHHHHhhccchhhhHhhhccCCchhHHHH-HHHHHHHHHHHcccCCCCce
Q 016424          221 TILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMA-YAAVKFADACLRGLRGDAGV  289 (390)
Q Consensus       221 t~vp~~S~~~v--~~-~------~~~~-~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A-~a~~~lv~aIl~~~~~~~~v  289 (390)
                      +++|+||++++  .+ +      ++++ .++++.++++++|++|++.   ||+|+|++| .++++++++|++|.+. +.+
T Consensus       170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~ail~~~~~-~~i  245 (313)
T TIGR01756       170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMKAWLFGTRP-GEV  245 (313)
T ss_pred             ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence            99999999988  43 1      2332 3689999999999999994   589999977 6999999999997653 359


Q ss_pred             EEEe-eee--CCC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHhHHHHHHHHHh
Q 016424          290 VECA-FVA--SQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYESGLFCLLHLCFQDWLGE  346 (390)
Q Consensus       290 ~~~s-~~~--g~~--~~~~~~svPv~ig~~Gv~~i~~-l~~Ls~~E~~~L~~~~~~i~~~l~~  346 (390)
                      +||+ +++  |+|  ++++|||+||++|++|++++++ + +|+++|+++|+.++..|+.+...
T Consensus       246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~  307 (313)
T TIGR01756       246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERET  307 (313)
T ss_pred             EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9998 575  388  3699999999999999999999 7 99999999999999766655533

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=4.1e-51  Score=392.86  Aligned_cols=252  Identities=28%  Similarity=0.427  Sum_probs=227.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCc--hHHHHHHHhcccCCC-eEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~--~~g~a~DL~~~~~~~-~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |+||||+|.+|+.+++.+++.+  ...||+|||+++  +++.++|+.|..... ..++.. ++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCchHHHhCCCCEEEECCC
Confidence            6899998999999999999998  788999999987  789999999976432 344433 6788899999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  198 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~l  198 (390)
                      .|+++|++|.+++.+|++++++++++|+++||+||+|++|||+|++|+++    ++.+++|++|+||+|+||+.|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    77789999999999669999999999


Q ss_pred             HHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHH
Q 016424          199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA  278 (390)
Q Consensus       199 a~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~a  278 (390)
                      |+++++++++|+++|||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999999 8999999765                                     67899999999


Q ss_pred             HHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424          279 CLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD  342 (390)
Q Consensus       279 Il~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~  342 (390)
                      |++|.+   .+++++ +++|+|  +++++||+||++|++|+++++++ +|+++|+++|+.++..++.
T Consensus       198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~  260 (263)
T cd00650         198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKK  260 (263)
T ss_pred             HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            999853   478887 679998  48999999999999999999996 9999999999999864443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.7e-42  Score=320.02  Aligned_cols=292  Identities=24%  Similarity=0.339  Sum_probs=257.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCC-----CCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG  109 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~-----~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d  109 (390)
                      +.+.+|.|.||+|.||+++.+.++...     .--.|+|.|+..    +.|+.++|+|+.. +.++....+||..++++|
T Consensus         2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~-PlL~~Vvattd~~~afkd   80 (332)
T KOG1496|consen    2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCAL-PLLKGVVATTDEVEAFKD   80 (332)
T ss_pred             CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhh-hHHHhhhcccChhhhhcc
Confidence            456799999999999999999997631     223899999987    6899999999985 555554457788999999


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeeccc
Q 016424          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  188 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~  188 (390)
                      .|+.|+.++.||++||+|.|++..|..|+++.++++++|+ |+.+++++.||.|..+.++.   +.++.+|.+++-.+|.
T Consensus        81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR  157 (332)
T KOG1496|consen   81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR  157 (332)
T ss_pred             CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence            9999999999999999999999999999999999999998 89999999999999987764   6788999999999999


Q ss_pred             ccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCC---------CCCHHHH--HHHHHhhccchhhhHh
Q 016424          189 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVE  256 (390)
Q Consensus       189 Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~---------~~~~~~~--~~l~~~v~~~~~eIi~  256 (390)
                      ||.+|+..+||.++||+.++| ++++||+|+. |++|+..++++..         .++|+.|  .++.+.||++|..|++
T Consensus       158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~  236 (332)
T KOG1496|consen  158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK  236 (332)
T ss_pred             hchhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence            999999999999999999999 6999999998 9999999998853         1456666  5899999999999998


Q ss_pred             hhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEeeeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424          257 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC  334 (390)
Q Consensus       257 ~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~  334 (390)
                      ++  |-|+.+|.|.+++++++.|+.+.+...++....|.+|.|  |++..||+||++ ++|-|++++-.+++++-++++.
T Consensus       237 ar--k~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~  313 (332)
T KOG1496|consen  237 AR--KLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMD  313 (332)
T ss_pred             hh--hhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhh
Confidence            75  468889999999999999999998665444445889999  889999999999 8899999986699999999999


Q ss_pred             HhHH
Q 016424          335 LLHL  338 (390)
Q Consensus       335 ~~~~  338 (390)
                      .+++
T Consensus       314 ~t~~  317 (332)
T KOG1496|consen  314 LTAK  317 (332)
T ss_pred             hhHH
Confidence            8885

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=3.2e-33  Score=245.27  Aligned_cols=137  Identities=40%  Similarity=0.625  Sum_probs=124.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCC--eEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~--~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+||||+|.||+++++.|+++++++||+|+|+++  ++|+++||+|+.+..  ..+...  .+ +++++|||+||+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~~aDivvita   77 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS--GD-YEALKDADIVVITA   77 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE--SS-GGGGTTESEEEETT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc--cc-ccccccccEEEEec
Confidence            799999999999999999999999999999999997  799999999987433  344433  34 68999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      |.||+||++|.+++..|+++++++++.|.++||+++++++|||+|+++++    +++.+++|++|+||
T Consensus        78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG  141 (141)
T PF00056_consen   78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG  141 (141)
T ss_dssp             STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred             cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence            99999999999999999999999999999999999999999999988765    48889999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=100.00  E-value=7.7e-31  Score=267.27  Aligned_cols=276  Identities=20%  Similarity=0.254  Sum_probs=192.7

Q ss_pred             CEEEEEcCCCCcHHHHH-HHHHhC-C--CCcEEEEEeCC-c-hHH----HHHHHhcccCCCeEEEEeCCCChhhhhCCCc
Q 016424           42 FKVAILGAAGGIGQPLA-MLMKIN-P--LVSVLHLYDVV-N-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a-~~l~~~-~--~~~eL~L~Di~-~-~~g----~a~DL~~~~~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      |||+|||| |++..+.. ..|+.. +  ..+||+|||+| + ...    .+.++.+.. ...+++.. |+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~~-t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVHL-TTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence            69999999 86532222 244442 3  46999999999 5 222    223333322 34566544 689999999999


Q ss_pred             EEEEcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424          112 LVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l--------------------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~  171 (390)
                      |||++.++++.+++++++.                    +.+|+++++++++.|+++||+||+|++|||+|++|+++   
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---  154 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---  154 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence            9999988877777666553                    68999999999999999999999999999999997654   


Q ss_pred             HHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccC---------ceeeec-c--------------
Q 016424          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPL-L--------------  226 (390)
Q Consensus       172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~---------~t~vp~-~--------------  226 (390)
                       ++.+   +.|+||+|+.+ .|+++++|+.+|+++++|+++|+| ||..         ++.+|. .              
T Consensus       155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~  229 (419)
T cd05296         155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL  229 (419)
T ss_pred             -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence             6654   68999999884 899999999999999999999999 8876         234441 1              


Q ss_pred             -ccC------CCCCC------CCHHHHH------------------HHHHhhccch----hhhHhhhccCCchhHHHHHH
Q 016424          227 -SQV------KPPCS------FTQEETE------------------YLTNRIQNGG----TEVVEAKAGAGSATLSMAYA  271 (390)
Q Consensus       227 -S~~------~v~~~------~~~~~~~------------------~l~~~v~~~~----~eIi~~k~gkg~t~~s~A~a  271 (390)
                       +..      .+|..      +.++.++                  ++.+..++..    .+-++.   ++.+.|  +..
T Consensus       230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~---r~g~~y--~e~  304 (419)
T cd05296         230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEK---RGGAGY--SEA  304 (419)
T ss_pred             hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHh---hcCcch--HHH
Confidence             000      00110      1121111                  1111111110    011111   122333  378


Q ss_pred             HHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          272 AVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       272 ~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                      ++++++||.+|.+.   ++.++ .++|.+   |+|.++++||+|+++|+.++.- ++|++...++++...
T Consensus       305 a~~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~  370 (419)
T cd05296         305 ALALISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVK  370 (419)
T ss_pred             HHHHHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHH
Confidence            89999999987653   44444 567875   7899999999999999999765 799999988877444

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=1.8e-32  Score=248.28  Aligned_cols=153  Identities=31%  Similarity=0.462  Sum_probs=135.9

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCC-----------CCCCHHHHHHHHHhhccchhhhH
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV  255 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~-----------~~~~~~~~~~l~~~v~~~~~eIi  255 (390)
                      |.||++||+++||+++|++|++++++||||||+ +++|+||++++.           ..+++++++++.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 999999999874           23677788999999999999999


Q ss_pred             hhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCc--cEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 016424          256 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TEL--PFFASKVRLGRQGAEEIFQLGPLNEYESG  331 (390)
Q Consensus       256 ~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~--~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~  331 (390)
                      ++|.  |+++||+|.|+++++++|++|.+   .+++++ +++|+| .++  +|||+||++|++|++++++.++|+++|++
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  154 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE  154 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence            9873  89999999999999999999874   488887 779999 334  99999999999999999984499999999


Q ss_pred             HHHHhHHHHHHHHH
Q 016424          332 LFCLLHLCFQDWLG  345 (390)
Q Consensus       332 ~L~~~~~~i~~~l~  345 (390)
                      +|++++..|++.++
T Consensus       155 ~l~~sa~~l~~~i~  168 (174)
T PF02866_consen  155 KLKESAKELKKEIE  168 (174)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999954444443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.98  E-value=5.9e-31  Score=268.54  Aligned_cols=269  Identities=20%  Similarity=0.210  Sum_probs=189.4

Q ss_pred             CEEEEEcCCCCcHHHHHH----HHHhCC---CCcEEEEEeCCc-hHHHHHH----HhcccCCCeEEEEeCCCChhhhhCC
Q 016424           42 FKVAILGAAGGIGQPLAM----LMKINP---LVSVLHLYDVVN-TPGVTAD----ISHMDTGAVVRGFLGQPQLENALTG  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~----~l~~~~---~~~eL~L~Di~~-~~g~a~D----L~~~~~~~~v~~~~~t~dl~~al~d  109 (390)
                      +||+|||| |+.   +++    .|+..+   ..+||+|||+|+ ....+..    +.+.. ...+++.. |+|+++|++|
T Consensus         1 ~KI~iIGg-GS~---~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~g   74 (425)
T cd05197           1 VKIAIIGG-GSS---FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIID   74 (425)
T ss_pred             CEEEEECC-chH---hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCC
Confidence            69999999 853   444    344443   368999999998 3333333    33322 34566554 7899999999


Q ss_pred             CcEEEEcC---C---------CCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH
Q 016424          110 MDLVIIPA---G---------VPRKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  169 (390)
Q Consensus       110 ADiVIi~a---g---------~p~k~g~~--------r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~a  169 (390)
                      |||||.+.   |         +|.|+|..        ....+.+|++++++|++.|+++||+||+|++|||+|++|+++ 
T Consensus        75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~-  153 (425)
T cd05197          75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV-  153 (425)
T ss_pred             CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH-
Confidence            99999984   3         35566532        245678999999999999999999999999999999998755 


Q ss_pred             HHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccCceeeeccccCCCC----------------
Q 016424          170 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKPP----------------  232 (390)
Q Consensus       170 e~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~~t~vp~~S~~~v~----------------  232 (390)
                         ++.  +|+.|+||+|+. +.|+++++|+.+|+++++|+++++| ||+.     +||.+++.                
T Consensus       154 ---~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~  222 (425)
T cd05197         154 ---RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKS  222 (425)
T ss_pred             ---HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccC
Confidence               555  377899999887 8999999999999999999999999 9983     34433210                


Q ss_pred             ----------------------------CC------CCH----H-------------HHH----HHHHhhccc---hhh-
Q 016424          233 ----------------------------CS------FTQ----E-------------ETE----YLTNRIQNG---GTE-  253 (390)
Q Consensus       233 ----------------------------~~------~~~----~-------------~~~----~l~~~v~~~---~~e-  253 (390)
                                                  ..      ..+    +             +..    ++.+..++.   ... 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~  302 (425)
T cd05197         223 KDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVV  302 (425)
T ss_pred             ccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChh
Confidence                                        00      000    0             000    011111100   000 


Q ss_pred             hHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHH
Q 016424          254 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYE  329 (390)
Q Consensus       254 Ii~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E  329 (390)
                      -..   -.+.+.+  +..++++++||.+|.+.   ++.++ .++|..   |+|.++++||+|+++|+.++.- ++|++..
T Consensus       303 ~~~---~r~~~~~--~e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~  373 (425)
T cd05197         303 ELI---KRGGRKY--SEAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFV  373 (425)
T ss_pred             hhh---hcCCccc--HHHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHH
Confidence            000   0122223  47889999999998763   44454 567775   7899999999999999999765 7999988


Q ss_pred             HHHHHHhH
Q 016424          330 SGLFCLLH  337 (390)
Q Consensus       330 ~~~L~~~~  337 (390)
                      +++++.-.
T Consensus       374 ~~Li~~~~  381 (425)
T cd05197         374 KGLLRQRK  381 (425)
T ss_pred             HHHHHHHH
Confidence            88777444

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.98  E-value=5e-31  Score=269.78  Aligned_cols=280  Identities=17%  Similarity=0.148  Sum_probs=194.3

Q ss_pred             CCEEEEEcCCCCcHHHHHH--HHH-hCCCC-cEEEEEeCCc--hH-HHHHHHhccc--CCCeEEEEeCCCChhhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~--~l~-~~~~~-~eL~L~Di~~--~~-g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      ++||+|||| |++|.+.++  .++ ...+. .||+|||+++  +. +.+. +.+..  ....+++. .++|+++|++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence            479999999 999999887  665 34454 5999999998  33 3333 44432  12334443 2679889999999


Q ss_pred             EEEEcCCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH
Q 016424          112 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  168 (390)
Q Consensus       112 iVIi~ag~p-~k~g--------------~~r~~l--------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~  168 (390)
                      |||++++++ ++++              ++|.+.        +.+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            999999876 5545              566677        89999999999999999999999999999999998644


Q ss_pred             HHHHHHhCCCCCCceeeccc--ccHHHHHHHHHHHhCCCCCCCceEEee-cccC---------ceeeecccc--------
Q 016424          169 AEVFKKAGTYDPKKLLGVTM--LDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLSQ--------  228 (390)
Q Consensus       169 ae~~~~~s~~p~~kviG~t~--Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~---------~t~vp~~S~--------  228 (390)
                          +   ++|+.||||+|+  +|+.   +.+|+.+|+++++|++++.| ||..         ++.+|.+-.        
T Consensus       158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~  227 (431)
T PRK15076        158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTR  227 (431)
T ss_pred             ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCch
Confidence                3   578899999983  6664   78999999999999999999 5554         233332110        


Q ss_pred             -CC-C-----------CC------------C-C--CHHHHHHHHHhh---ccch-------hhhH-hhhccCCchhHHHH
Q 016424          229 -VK-P-----------PC------------S-F--TQEETEYLTNRI---QNGG-------TEVV-EAKAGAGSATLSMA  269 (390)
Q Consensus       229 -~~-v-----------~~------------~-~--~~~~~~~l~~~v---~~~~-------~eIi-~~k~gkg~t~~s~A  269 (390)
                       .. +           +.            . .  .++.++++...+   .+++       .+.. +..+|+..-.-..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (431)
T PRK15076        228 CQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSR  307 (431)
T ss_pred             hcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccch
Confidence             00 0           00            0 1  233332222100   0111       1111 11111100001145


Q ss_pred             HHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          270 YAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                      ..++++++||.+|.+.   ++.++ .++|.+   |+|.++++||+|+++|+.++.- ++|++..+++++.-.
T Consensus       308 e~a~~ii~ai~~~~~~---~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~  375 (431)
T PRK15076        308 EYASTIIEAIETGEPS---VIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNI  375 (431)
T ss_pred             HHHHHHHHHHhcCCce---EEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHH
Confidence            7899999999988763   44454 567875   7899999999999999999875 799999999887444

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.97  E-value=6.2e-29  Score=254.25  Aligned_cols=280  Identities=19%  Similarity=0.257  Sum_probs=189.3

Q ss_pred             CEEEEEcCCCCcHHHHHH----HHHhC-C--CCcEEEEEeCCc-hHHHHHHHhccc---CCCeEEEEeCCCChhhhhCCC
Q 016424           42 FKVAILGAAGGIGQPLAM----LMKIN-P--LVSVLHLYDVVN-TPGVTADISHMD---TGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~----~l~~~-~--~~~eL~L~Di~~-~~g~a~DL~~~~---~~~~v~~~~~t~dl~~al~dA  110 (390)
                      |||+|||| |+.   +++    .|.+. +  ..+||+|||||+ ....+..+.+..   ....+++.. |+|+++|++||
T Consensus         1 ~KI~iIGa-GS~---~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~-Ttdr~eAl~gA   75 (437)
T cd05298           1 FKIVIAGG-GST---YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVY-TTDPEEAFTDA   75 (437)
T ss_pred             CeEEEECC-cHH---HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEE-ECCHHHHhCCC
Confidence            79999999 854   443    44444 2  368999999998 333333333221   234666654 78999999999


Q ss_pred             cEEEEcC---C---------CCCCCCC---C-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 016424          111 DLVIIPA---G---------VPRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  170 (390)
Q Consensus       111 DiVIi~a---g---------~p~k~g~---~-----r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae  170 (390)
                      ||||++.   |         +|.|+|.   +     ....+.||+++++++++.|+++||+||+|++|||++++|+.+  
T Consensus        76 DfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~--  153 (437)
T cd05298          76 DFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL--  153 (437)
T ss_pred             CEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH--
Confidence            9999974   3         3566663   2     235678999999999999999999999999999999998654  


Q ss_pred             HHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccC----------ceeeeccc----c-------
Q 016424          171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG----------VTILPLLS----Q-------  228 (390)
Q Consensus       171 ~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~----------~t~vp~~S----~-------  228 (390)
                        ++.  +|+.|+||+|+.. .-++..+|+.||+++++|+..+.| ||..          ++.+|.+-    .       
T Consensus       154 --~~~--~~~~kviGlC~~~-~~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~  228 (437)
T cd05298         154 --RRL--FPNARILNICDMP-IAIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPD  228 (437)
T ss_pred             --HHH--CCCCCEEEECCcH-HHHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCccc
Confidence              554  7789999999864 457889999999999999999999 4432          23444211    0       


Q ss_pred             ---C---C-------------------CCCC-----C-CHH--------------HHHHHHHhhccchhhhHhhhccCCc
Q 016424          229 ---V---K-------------------PPCS-----F-TQE--------------ETEYLTNRIQNGGTEVVEAKAGAGS  263 (390)
Q Consensus       229 ---~---~-------------------v~~~-----~-~~~--------------~~~~l~~~v~~~~~eIi~~k~gkg~  263 (390)
                         .   .                   +++.     + .++              .+++..+++.+...++.....-+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~  308 (437)
T cd05298         229 SDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGS  308 (437)
T ss_pred             ccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhh
Confidence               0   0                   1110     0 111              1111111111000000000000000


Q ss_pred             hhH--HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          264 ATL--SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       264 t~~--s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                      ...  ..|.+++++++||++|.+   .+++++ +++|.|   ++|+++|+||+||++|++++.- ++|++...++++.-.
T Consensus       309 ~~~~~~ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~~~~~  384 (437)
T cd05298         309 TFHVDVHGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLMEQQV  384 (437)
T ss_pred             hhhccchHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHHHHHH
Confidence            111  146889999999999865   477787 678887   6799999999999999999865 799999988877443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.3e-28  Score=243.63  Aligned_cols=280  Identities=23%  Similarity=0.258  Sum_probs=191.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHH--HHHhCC--CCcEEEEEeCCc-hHHHHHHHhccc---CCCeEEEEeCCCChhhhhCCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPGVTADISHMD---TGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~--~l~~~~--~~~eL~L~Di~~-~~g~a~DL~~~~---~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      +.+||+|||| |+++.+-..  .|.+.+  .++||+|||+++ ......++.+..   ..+.+++.. |+|+++||+|||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~-ttd~~eAl~gAd   79 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEA-TTDRREALEGAD   79 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCHHHHhcCCC
Confidence            4579999999 977666543  445554  478999999998 333334443321   234577655 689999999999


Q ss_pred             EEEEcC---C---------CCCCCCCCH--------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424          112 LVIIPA---G---------VPRKPGMTR--------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (390)
Q Consensus       112 iVIi~a---g---------~p~k~g~~r--------~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~  171 (390)
                      ||+.+.   |         +|.|+|..+        .....|++|++.+|++.|+++||+||++++|||+.++|..    
T Consensus        80 fVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeA----  155 (442)
T COG1486          80 FVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEA----  155 (442)
T ss_pred             EEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHH----
Confidence            999974   2         477777422        3456899999999999999999999999999999999754    


Q ss_pred             HHHhCCCCCCceeecccccHHHHHHHHHHHhCCCC-CCCceEEee-cccC---------ceeeecccc------------
Q 016424          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-GHAG---------VTILPLLSQ------------  228 (390)
Q Consensus       172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p-~~V~~~ViG-~Hg~---------~t~vp~~S~------------  228 (390)
                      +++.  +|..|+||+|+.. .-....||+.||+++ +++++.+.| ||..         .+.+|.+..            
T Consensus       156 v~r~--~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~  232 (442)
T COG1486         156 VRRL--YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEPE  232 (442)
T ss_pred             HHHh--CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCccc
Confidence            4554  4545999999874 456899999999975 999999999 5543         122221110            


Q ss_pred             -------CC--------C---CCC-----------------------CCHHHHHHHHHhhccch--------hhhHhhhc
Q 016424          229 -------VK--------P---PCS-----------------------FTQEETEYLTNRIQNGG--------TEVVEAKA  259 (390)
Q Consensus       229 -------~~--------v---~~~-----------------------~~~~~~~~l~~~v~~~~--------~eIi~~k~  259 (390)
                             ..        +   +..                       ...+++.+..++..+.-        -+..+   
T Consensus       233 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~---  309 (442)
T COG1486         233 NKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE---  309 (442)
T ss_pred             cccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhh---
Confidence                   00        0   000                       01111111111111000        01111   


Q ss_pred             cCCch--hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 016424          260 GAGSA--TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF  333 (390)
Q Consensus       260 gkg~t--~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L  333 (390)
                      .++.+  .+  +.+++++++||++|++.   ++.++ -++|..   |+|.++++||+||++|++++.. |+|++.-++++
T Consensus       310 ~~~~~~~~~--~e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~  383 (442)
T COG1486         310 KRIGAGKYS--SEYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLM  383 (442)
T ss_pred             hcCCccccc--HHHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHH
Confidence            11222  23  37889999999998763   55555 578875   8899999999999999999776 89999999988


Q ss_pred             HHhH
Q 016424          334 CLLH  337 (390)
Q Consensus       334 ~~~~  337 (390)
                      +...
T Consensus       384 ~~~i  387 (442)
T COG1486         384 HTNI  387 (442)
T ss_pred             HHHH
Confidence            7544

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.96  E-value=1e-26  Score=237.83  Aligned_cols=278  Identities=19%  Similarity=0.151  Sum_probs=193.8

Q ss_pred             CEEEEEcCCCCcHHHHHH--HHHhC-CC-CcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhhhCCCcEE
Q 016424           42 FKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~--~l~~~-~~-~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      +||+|||| |++|++.++  .+++. .+ ..+|+|||+++  +.....++.+..  .....++.. ++|+++|++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~-ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEA-TTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEE-eCCHHHHhcCCCEE
Confidence            59999999 999999887  45544 33 35999999998  455555555432  122334332 57999999999999


Q ss_pred             EEcCCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424          114 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (390)
Q Consensus       114 Ii~ag~p~k~g~~r----------------------~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~  171 (390)
                      |++++.+..+++++                      .....+|++++.++++.+.++||++|++++|||++++|+++   
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---  155 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---  155 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence            99988666555544                      45678999999999999999999999999999999998654   


Q ss_pred             HHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccC---------ceeeeccc-----------cCC
Q 016424          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLS-----------QVK  230 (390)
Q Consensus       172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~---------~t~vp~~S-----------~~~  230 (390)
                       ++.++   .|+||+|+. +.|++..+|+.+|+++++|+++++| ||..         ++.+|.+-           ...
T Consensus       156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~  230 (423)
T cd05297         156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS  230 (423)
T ss_pred             -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence             66554   799999876 7899999999999999999999999 5544         23444211           111


Q ss_pred             -CC-----------C-------C------CCHHHHHH------------------HHHhhccchhhhHhh--hccCCchh
Q 016424          231 -PP-----------C-------S------FTQEETEY------------------LTNRIQNGGTEVVEA--KAGAGSAT  265 (390)
Q Consensus       231 -v~-----------~-------~------~~~~~~~~------------------l~~~v~~~~~eIi~~--k~gkg~t~  265 (390)
                       ++           .       .      ..++....                  +........  ..+.  ....+...
T Consensus       231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  308 (423)
T cd05297         231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPVKR  308 (423)
T ss_pred             cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccccc
Confidence             10           0       0      11111111                  111111000  0000  00001111


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                        .+..++++++||.+|.+.   ++.++ .++|..   |+|.++++||+|+++|++++.- ++|++...++++.-.
T Consensus       309 --~~e~a~~ii~ai~~~~~~---~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~  378 (423)
T cd05297         309 --SGEYASPIIEALVTGKPR---RINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRI  378 (423)
T ss_pred             --chHHHHHHHHHHhcCCce---EEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHH
Confidence              346789999999987653   45555 567775   7899999999999999999865 799999988887444

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.88  E-value=3.9e-22  Score=181.55  Aligned_cols=152  Identities=21%  Similarity=0.240  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCcHHHHHH--HHHhCC--CCcEEEEEeCCc-hHH----HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEE
Q 016424           43 KVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~--~l~~~~--~~~eL~L~Di~~-~~g----~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      ||+|||| |++..+...  ++...+  ..+||+|||+|+ ...    .+..+.... ..++++.. |+|+++|++|||||
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~~-ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVEA-TTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEEE-ESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEEE-eCCHHHHhCCCCEE
Confidence            8999999 988777543  445544  357999999998 223    333333322 34555443 68999999999999


Q ss_pred             EEcCC------------CCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424          114 IIPAG------------VPRKPGMTR----------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (390)
Q Consensus       114 Ii~ag------------~p~k~g~~r----------~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~  171 (390)
                      |++..            +|+|+|...          ...+.|++|++.++++.|+++|||||++|+|||+.++|..+   
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---  154 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---  154 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence            99853            478877432          35678999999999999999999999999999999998544   


Q ss_pred             HHHhCCCCCCceeecccccHHHHHHHHHHHhCC
Q 016424          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL  204 (390)
Q Consensus       172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v  204 (390)
                       .+.  +|..|++|+|+.. .-....+|+.||+
T Consensus       155 -~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred             -HHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence             444  4457999999864 4578899999874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.89  E-value=6.7e-08  Score=96.95  Aligned_cols=116  Identities=18%  Similarity=0.246  Sum_probs=87.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHH-------------HHHh-cccCCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-------------ADIS-HMDTGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a-------------~DL~-~~~~~~~v~~~~~t~dl~~al  107 (390)
                      |||+|||. |.||...+..|++.++  +++++|+++.+-..             .+|. +.....+++.   |+|+++|+
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence            79999999 9999999999999987  99999999721110             1121 1112245775   57999999


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHH
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAA  169 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~a  169 (390)
                      +++|+++|+.|.|.++.-      ..+...+...++.|.++.+...+++.  |-|++....+-.
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~  132 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA  132 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence            999999999999988743      35577889999999999877444444  789988776543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.63  E-value=8.3e-08  Score=88.04  Aligned_cols=133  Identities=19%  Similarity=0.278  Sum_probs=82.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHH-----------HH-hcccCCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTA-----------DI-SHMDTGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~-----------DL-~~~~~~~~v~~~~~t~dl~~al  107 (390)
                      |||+|||. |.||.++|..++..+.  +++-+|+|+.  ..+..           ++ .+.....+++.   ++|..+++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI   74 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence            79999999 9999999999999997  9999999971  11111           11 11111356776   35788899


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      ++||++|++.+.|.+++.+      -+...+.+.++.|.++. ++.+|++= |=|++.+-.++..++.+.++..  .=|+
T Consensus        75 ~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~f~  146 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--EDFH  146 (185)
T ss_dssp             HH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TCEE
T ss_pred             hccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cCCe
Confidence            9999999999999876431      23445666777777765 44544433 7888888766666677766532  3445


Q ss_pred             ccc
Q 016424          186 VTM  188 (390)
Q Consensus       186 ~t~  188 (390)
                      ++.
T Consensus       147 la~  149 (185)
T PF03721_consen  147 LAY  149 (185)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.63  E-value=8.2e-08  Score=87.62  Aligned_cols=118  Identities=24%  Similarity=0.398  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hH---HHHHH-Hhcc----c--------CCCeEEEEeCCCChh
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTAD-ISHM----D--------TGAVVRGFLGQPQLE  104 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~---g~a~D-L~~~----~--------~~~~v~~~~~t~dl~  104 (390)
                      ||+|||| |.+|..++..++..+.  +++|||.+.  +.   ....+ +...    .        ...+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999999 9999999999999988  999999987  11   11112 1111    0        1246665   36886


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCce
Q 016424          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  183 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kv  183 (390)
                      ++. |||+||-+.              .++.++-+++...++++| |++++  .||-..+...   ++.... . .|.|+
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i~---~la~~~-~-~p~R~  132 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSIS---ELAAAL-S-RPERF  132 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-HH---HHHTTS-S-TGGGE
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCHH---HHHhcc-C-cCceE
Confidence            655 999999997              567889999999999999 67754  7887765542   221222 2 36778


Q ss_pred             eeccc
Q 016424          184 LGVTM  188 (390)
Q Consensus       184 iG~t~  188 (390)
                      +|+-.
T Consensus       133 ig~Hf  137 (180)
T PF02737_consen  133 IGMHF  137 (180)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.53  E-value=5.4e-07  Score=88.68  Aligned_cols=119  Identities=22%  Similarity=0.320  Sum_probs=85.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hhcc---c---------CCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-ISHM---D---------TGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~~~---~---------~~~~v~~~~~t~d  102 (390)
                      .+||+|||| |.+|+.+|..++..++  +++|+|+++  + .+  .... |...   .         ...+++.   ++|
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~---~~~   76 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP---TTD   76 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc---cCc
Confidence            469999999 9999999999998666  999999996  1 11  1111 1111   0         1134443   456


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~  181 (390)
                      + ++++|||+||-++              .+|..+-+++...+.+++ |++++  .||-..+...-+++.+     ..|+
T Consensus        77 ~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~~~-----~rpe  134 (307)
T COG1250          77 L-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAEAL-----KRPE  134 (307)
T ss_pred             h-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHHHh-----CCch
Confidence            5 5899999999997              788999999999999999 78854  8999886554333322     3356


Q ss_pred             ceeecc
Q 016424          182 KLLGVT  187 (390)
Q Consensus       182 kviG~t  187 (390)
                      |++|+.
T Consensus       135 r~iG~H  140 (307)
T COG1250         135 RFIGLH  140 (307)
T ss_pred             hEEEEe
Confidence            788874

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.50  E-value=6.8e-07  Score=88.80  Aligned_cols=120  Identities=16%  Similarity=0.124  Sum_probs=83.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h-HH----HHHHHhc---cc-----CCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PG----VTADISH---MD-----TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~-~g----~a~DL~~---~~-----~~~~v~~~~~t~dl~~al  107 (390)
                      .||+|||+ |.+|+.++..++..++  +++|||+++ . ..    +...+..   ..     ...+++.   ++++++++
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av   81 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV   81 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence            58999999 9999999999999988  999999986 1 11    1111111   10     1134554   35788999


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  187 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t  187 (390)
                      ++||+|+.+.              .+|..+-+++...+.+++|... |+.||-+.+...-++   ...  -.|.|++|+.
T Consensus        82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la---~~~--~~p~R~~g~H  141 (321)
T PRK07066         82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFY---ARA--THPERCVVGH  141 (321)
T ss_pred             cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHH---Hhc--CCcccEEEEe
Confidence            9999999987              5667888889999999995432 568888876543222   222  2356777764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.46  E-value=2.1e-06  Score=83.99  Aligned_cols=123  Identities=18%  Similarity=0.259  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHH---HHH-HH---hccc---------CCCeEEEEeCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG---VTA-DI---SHMD---------TGAVVRGFLGQP  101 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g---~a~-DL---~~~~---------~~~~v~~~~~t~  101 (390)
                      ...||+|||+ |.+|..+|..++..+.  +++|||++.  +..   ... .+   .+..         ...+++.   ++
T Consensus         4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~   77 (286)
T PRK07819          4 AIQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TT   77 (286)
T ss_pred             CccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eC
Confidence            3459999999 9999999999999987  999999987  111   111 11   1110         0134554   45


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p  179 (390)
                      |+ +++++||+||.+.              .++..+-+++...++++| + ++++  +||-..+....++    .... .
T Consensus        78 ~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~la----~~~~-~  135 (286)
T PRK07819         78 DL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKLA----AATK-R  135 (286)
T ss_pred             CH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC-C
Confidence            77 7799999999997              567888888889999997 4 5543  7777765543332    2222 3


Q ss_pred             CCceeeccccc
Q 016424          180 PKKLLGVTMLD  190 (390)
Q Consensus       180 ~~kviG~t~Ld  190 (390)
                      +.|++|+...+
T Consensus       136 ~~r~~g~hf~~  146 (286)
T PRK07819        136 PGRVLGLHFFN  146 (286)
T ss_pred             CccEEEEecCC
Confidence            56788876544

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.45  E-value=2e-06  Score=83.80  Aligned_cols=120  Identities=19%  Similarity=0.307  Sum_probs=78.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHH----Hhc-----ccC---------CCeEEEEeCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD----ISH-----MDT---------GAVVRGFLGQP  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~D----L~~-----~~~---------~~~v~~~~~t~  101 (390)
                      .+||+|||+ |.+|..++..++..+.  ++++||+++ ....+.+    +.+     ...         ..+++.   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            369999999 9999999999998886  899999986 1111111    111     000         124554   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      |+.+++++||+||.+.              ..+..+.+++.+.+.++++ ++++  ++|.......   ++.... . .+
T Consensus        77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~---~~~~~~-~-~~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPS---QFAEAT-G-RP  135 (287)
T ss_pred             CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHH---HHHhhc-C-Cc
Confidence            7888999999999996              3446677788888888875 4533  5666654332   222221 2 24


Q ss_pred             Cceeecc
Q 016424          181 KKLLGVT  187 (390)
Q Consensus       181 ~kviG~t  187 (390)
                      .|++|+.
T Consensus       136 ~r~vg~H  142 (287)
T PRK08293        136 EKFLALH  142 (287)
T ss_pred             ccEEEEc
Confidence            5777764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.41  E-value=5.6e-06  Score=77.59  Aligned_cols=148  Identities=20%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||++|.+|++++..|...+.  ++.++|.++  ....+.+..+...  ....+... + +..++++++|+||++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~-~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG-A-DNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE-e-ChHHHHhcCCEEEEEC
Confidence            6999998449999999999998874  899999876  2333333322110  11112221 2 3368899999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc-----------HHHHHHHHHHhCCCCC-Cceee
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----------VPIAAEVFKKAGTYDP-KKLLG  185 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~-----------t~i~ae~~~~~s~~p~-~kviG  185 (390)
                      ..                ..+.++.+.+...-++.++|-++||++.-           ..-.+|.+++.  +|+ .+|+.
T Consensus        77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~--~p~~~~VVk  138 (219)
T TIGR01915        77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAAL--LPETSRVVA  138 (219)
T ss_pred             CH----------------HHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHh--CCCCCeEee
Confidence            21                12333344444433456788889998751           00113444543  666 67886


Q ss_pred             c-ccccHHHHHHHHHHHhCCCCCCCceEEeecc
Q 016424          186 V-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH  217 (390)
Q Consensus       186 ~-t~Lds~R~~~~la~~l~v~p~~V~~~ViG~H  217 (390)
                      . .++....+.    .  ...+.+...++.|++
T Consensus       139 a~~~~~a~~~~----~--~~~~~~~~~~v~Gdd  165 (219)
T TIGR01915       139 AFHNLSAVLLQ----D--VDDEVDCDVLVCGDD  165 (219)
T ss_pred             ccccCCHHHhc----C--CCCCCCCCEEEECCC
Confidence            6 555432221    1  123334556666654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.36  E-value=2.8e-06  Score=88.57  Aligned_cols=121  Identities=15%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc---------------cCCCeEEEEeCCCChhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---------------DTGAVVRGFLGQPQLEN  105 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~---------------~~~~~v~~~~~t~dl~~  105 (390)
                      +|||+|||+ |.||.+++..|+..+..-+++.||+++.+  +..|...               .....++.   |+|+.+
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~   74 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK   74 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence            589999999 99999999999988654489999998721  1111110               01113444   467778


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHH
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA  168 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~  168 (390)
                      ++++||++|++.+.|.+.+-...+ -.-+...+.+.++.|.++.+++.+++.  |-|.++.-.+.
T Consensus        75 ~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~  138 (473)
T PLN02353         75 HVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE  138 (473)
T ss_pred             HHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHH
Confidence            999999999999999854210000 012345577888888888765544444  78888776554

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.31  E-value=3.1e-06  Score=92.49  Aligned_cols=120  Identities=18%  Similarity=0.208  Sum_probs=86.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h--HH--HHHHHh-----cc--c------CCCeEEEEeCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTADIS-----HM--D------TGAVVRGFLGQP  101 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~--~g--~a~DL~-----~~--~------~~~~v~~~~~t~  101 (390)
                      ...||+|||| |.+|..++..++..++  +++|+|++. .  .+  .+.++.     +.  .      ...+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            4469999999 9999999999999998  999999987 1  11  111111     10  0      0235654   45


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      |+ ++++|||+||-+.              .++..+-+++-..++++| |+++  +.||-..+-..-+++    .. -.|
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasnTS~l~i~~ia~----~~-~~p  443 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAI--LASNTSTISISLLAK----AL-KRP  443 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHh----hc-CCc
Confidence            76 7799999999997              678899999999999999 5664  489998865433322    22 236


Q ss_pred             Cceeecc
Q 016424          181 KKLLGVT  187 (390)
Q Consensus       181 ~kviG~t  187 (390)
                      .|++|+.
T Consensus       444 ~r~ig~H  450 (714)
T TIGR02437       444 ENFCGMH  450 (714)
T ss_pred             ccEEEEe
Confidence            7888884

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.29  E-value=2.3e-06  Score=93.82  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=86.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hhcc------c------CCCeEEEEeCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-ISHM------D------TGAVVRGFLGQP  101 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~~~------~------~~~~v~~~~~t~  101 (390)
                      +..||+|||| |.+|..++..++..++  +++|+|++.  + .+  ...+ +...      .      ...+++.   ++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence            3468999999 9999999999999988  999999987  1 21  1111 1110      0      1245665   45


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      |+ ++++|||+||-+.              .+|..+-+++...++++| |+++  +.||-..+-..-+++.    . -.|
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la~~----~-~~p  465 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSALPIKDIAAV----S-SRP  465 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHHhh----c-CCc
Confidence            76 6899999999987              678999999999999999 5664  4899988655333322    1 235


Q ss_pred             Cceeecc
Q 016424          181 KKLLGVT  187 (390)
Q Consensus       181 ~kviG~t  187 (390)
                      .|++|+.
T Consensus       466 ~r~ig~H  472 (737)
T TIGR02441       466 EKVIGMH  472 (737)
T ss_pred             cceEEEe
Confidence            7888873

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.29  E-value=4.9e-06  Score=91.02  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=85.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hh----cc--c------CCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-IS----HM--D------TGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~----~~--~------~~~~v~~~~~t~d  102 (390)
                      ..||+|||| |.+|..++..++..++  +++|||+++  + .+  .+.+ +.    +.  .      ...+++.   ++|
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~  386 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD  386 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence            468999999 9999999999999998  999999997  1 11  1111 11    10  0      1245665   457


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~  181 (390)
                      + ++++|||+||-+.              .++..+-+++-..++++|| +++  +.||-..+-..-+++   .. . .|.
T Consensus       387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la~---~~-~-~p~  444 (715)
T PRK11730        387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTI--LASNTSTISISLLAK---AL-K-RPE  444 (715)
T ss_pred             H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHHh---hc-C-CCc
Confidence            6 7799999999997              6778999999999999995 554  489998865433322   22 2 357


Q ss_pred             ceeecc
Q 016424          182 KLLGVT  187 (390)
Q Consensus       182 kviG~t  187 (390)
                      |++|+.
T Consensus       445 r~~g~H  450 (715)
T PRK11730        445 NFCGMH  450 (715)
T ss_pred             cEEEEe
Confidence            888874

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.29  E-value=2.8e-06  Score=75.62  Aligned_cols=92  Identities=25%  Similarity=0.377  Sum_probs=64.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh--ccc--------CCCeEEEEeCCCChhhhhCCCcE
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMD--------TGAVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~--~~~--------~~~~v~~~~~t~dl~~al~dADi  112 (390)
                      ||+|||| |+.|.++|..|..++.  ++.||+.++.  ...+|.  |..        ....++.   ++|+++++++||+
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~--~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~   72 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEE--QIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADI   72 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHH--HHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHH--HHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccE
Confidence            8999999 9999999999999995  9999999862  222232  221        1134554   4699999999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEec
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~t  158 (390)
                      ||++.  |              ....+++.+.+..+-+ +..+++++
T Consensus        73 Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   73 IIIAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             EEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             EEecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            99985  1              2236788888888874 44555443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.28  E-value=5e-06  Score=90.87  Aligned_cols=120  Identities=18%  Similarity=0.294  Sum_probs=86.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCc-h--HH--HHHHHh-----cc--c------CCCeEEEEeCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADIS-----HM--D------TGAVVRGFLGQ  100 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~-~--~g--~a~DL~-----~~--~------~~~~v~~~~~t  100 (390)
                      ...||+|||| |.+|..++..++ ..++  +++|+|++. .  .+  .+.+..     +.  .      ...+++.   +
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  381 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T  381 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence            3479999999 999999999988 7787  999999986 1  11  111111     10  0      1235665   4


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (390)
Q Consensus       101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p  179 (390)
                      +|+ ++++|||+||-+.              .+|.++.+++-..+++++ |++++  .||-..+...-+++.+     -.
T Consensus       382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la~~~-----~~  439 (708)
T PRK11154        382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIAAAA-----AR  439 (708)
T ss_pred             CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhc-----Cc
Confidence            576 7899999999997              678999999999999998 67644  7998886553333222     23


Q ss_pred             CCceeecc
Q 016424          180 PKKLLGVT  187 (390)
Q Consensus       180 ~~kviG~t  187 (390)
                      |.|++|+.
T Consensus       440 p~r~ig~H  447 (708)
T PRK11154        440 PEQVIGLH  447 (708)
T ss_pred             ccceEEEe
Confidence            56888874

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.28  E-value=7.1e-06  Score=89.58  Aligned_cols=120  Identities=18%  Similarity=0.261  Sum_probs=84.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCc--h-HH--HHH-HHhcc----c--------CCCeEEEEeCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN--T-PG--VTA-DISHM----D--------TGAVVRGFLGQ  100 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~--~-~g--~a~-DL~~~----~--------~~~~v~~~~~t  100 (390)
                      +..||+|||| |.+|..++..++ ..++  +++|||+++  + .+  .+. .+...    .        ...+++.   +
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence            3469999999 999999999888 4787  999999987  1 11  111 11111    0        0235664   4


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (390)
Q Consensus       101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p  179 (390)
                      +|+ ++++|||+||-+.              .++..+-+++-.+++++|+ +++  +.||-..+...-+++.+     -.
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~i--lasnTS~l~i~~la~~~-----~~  434 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTI--FASNTSSLPIGQIAAAA-----SR  434 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcE--EEeCCCCCCHHHHHHhc-----CC
Confidence            576 6899999999997              6778999999999999995 554  48999886554333322     23


Q ss_pred             CCceeecc
Q 016424          180 PKKLLGVT  187 (390)
Q Consensus       180 ~~kviG~t  187 (390)
                      |.|++|+.
T Consensus       435 p~r~~g~H  442 (699)
T TIGR02440       435 PENVIGLH  442 (699)
T ss_pred             cccEEEEe
Confidence            56888874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.27  E-value=9.3e-06  Score=78.86  Aligned_cols=120  Identities=21%  Similarity=0.354  Sum_probs=78.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HHH--H----HHHhccc---------CCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMD---------TGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g~--a----~DL~~~~---------~~~~v~~~~~t~d  102 (390)
                      +.||+|||+ |.+|..++..++..+.  ++++||++.  . .+.  .    .++.+..         ...+++.   ++|
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            358999999 9999999999998887  899999987  1 111  0    1111110         0124554   356


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~  181 (390)
                      + +++++||+||++.              ..+..+..++...+.++++ ++++  .||-.++....+++    ..+ .+.
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~----~~~-~~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAA----ATK-RPD  134 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHH----hhC-CCc
Confidence            5 5689999999997              3445666788888888885 5544  67766655433322    222 245


Q ss_pred             ceeeccc
Q 016424          182 KLLGVTM  188 (390)
Q Consensus       182 kviG~t~  188 (390)
                      |++|+..
T Consensus       135 r~ig~h~  141 (282)
T PRK05808        135 KVIGMHF  141 (282)
T ss_pred             ceEEeec
Confidence            7888743

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.23  E-value=1.3e-05  Score=78.19  Aligned_cols=120  Identities=13%  Similarity=0.233  Sum_probs=76.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHH--------Hh---cccC---------CCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD--------IS---HMDT---------GAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~D--------L~---~~~~---------~~~v~~~~~t  100 (390)
                      .||+|||+ |.+|..++..++..+.  ++++||+++ ....+.+        +.   +...         ..+++.   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999999 9999999999999887  899999987 2111111        11   1000         122443   3


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (390)
Q Consensus       101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p  179 (390)
                      +++ +++++||+||.+.              ..+..+..++.+.+.++++ ++++  +||-..+...-++   ...  -.
T Consensus        78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~la---~~~--~~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEIA---TAL--ER  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHHH---hhc--CC
Confidence            566 6899999999997              2334556777778888875 5644  5666655432222   221  12


Q ss_pred             CCceeecccc
Q 016424          180 PKKLLGVTML  189 (390)
Q Consensus       180 ~~kviG~t~L  189 (390)
                      +.|++|+...
T Consensus       136 ~~r~ig~hf~  145 (291)
T PRK06035        136 KDRFIGMHWF  145 (291)
T ss_pred             cccEEEEecC
Confidence            5678887543

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.19  E-value=2.2e-06  Score=80.20  Aligned_cols=124  Identities=24%  Similarity=0.333  Sum_probs=91.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc------hHHHHHHHhccc-----------------CCCeE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMD-----------------TGAVV   94 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~------~~g~a~DL~~~~-----------------~~~~v   94 (390)
                      ..+...|+|||| |.+|+.+|...++.++  .++|+|.++      .+++...+-+..                 +..++
T Consensus         8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri   84 (298)
T KOG2304|consen    8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRI   84 (298)
T ss_pred             cccccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Confidence            355679999999 9999999999999998  899999997      133333333321                 11244


Q ss_pred             EEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-HHHHHHHH
Q 016424           95 RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-PIAAEVFK  173 (390)
Q Consensus        95 ~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t-~i~ae~~~  173 (390)
                      +.   ++|..+++.|||+||-+.              -+|+.+-+++.+.+++.|+..- |+.||...+.- .++ -.+ 
T Consensus        85 ~~---~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~-il~tNTSSl~lt~ia-~~~-  144 (298)
T KOG2304|consen   85 KT---STNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSST-ILATNTSSLSLTDIA-SAT-  144 (298)
T ss_pred             HH---cCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccce-EEeecccceeHHHHH-hhc-
Confidence            43   468889999999998775              8999999999999999996542 34899887543 322 111 


Q ss_pred             HhCCCCCCceeeccc
Q 016424          174 KAGTYDPKKLLGVTM  188 (390)
Q Consensus       174 ~~s~~p~~kviG~t~  188 (390)
                          -+|.|+.|+.+
T Consensus       145 ----~~~srf~GlHF  155 (298)
T KOG2304|consen  145 ----QRPSRFAGLHF  155 (298)
T ss_pred             ----cChhhhceeec
Confidence                35678999964

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.17  E-value=1.5e-05  Score=83.83  Aligned_cols=124  Identities=23%  Similarity=0.330  Sum_probs=81.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HH-HHHhcc---c---------CCCeEEEEeCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VT-ADISHM---D---------TGAVVRGFLGQP  101 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a-~DL~~~---~---------~~~~v~~~~~t~  101 (390)
                      +..||+|||+ |.+|+.++..++..++  ++++||++.  + .+  .. ..+...   .         ...+++.   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            3468999999 9999999999999987  999999987  1 11  11 111111   0         0134554   35


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~  181 (390)
                      |+ +++++||+||.+.              .++..+-+++...+.+++|... |+.||-..+-..-+++.+.     .|.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i~~iA~~~~-----~p~  136 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSITAIAAGLA-----RPE  136 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHHHHHhcC-----ccc
Confidence            66 6789999999986              4556677777788999986543 3578887765432222221     245


Q ss_pred             ceeeccccc
Q 016424          182 KLLGVTMLD  190 (390)
Q Consensus       182 kviG~t~Ld  190 (390)
                      |++|+..++
T Consensus       137 r~~G~HFf~  145 (503)
T TIGR02279       137 RVAGLHFFN  145 (503)
T ss_pred             ceEEEeccC
Confidence            666665443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.16  E-value=2.4e-05  Score=76.40  Aligned_cols=122  Identities=21%  Similarity=0.321  Sum_probs=75.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHH----HHhc----ccC--------CCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA----DISH----MDT--------GAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~----DL~~----~~~--------~~~v~~~~~t~d  102 (390)
                      .+||+|||+ |.+|..++..++..+.  ++++||.+.  ......    .+.+    ...        ..+++.   +++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            369999999 9999999999998887  999999986  111111    1111    100        023554   346


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~  181 (390)
                      + +++++||+||++.  |            .+..+...+.+.+.+++ |++++  +||-..+-..-++   ...  -.+.
T Consensus        78 ~-~~~~~aD~Vieav--p------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~la---~~~--~~~~  135 (292)
T PRK07530         78 L-EDLADCDLVIEAA--T------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRLA---SAT--DRPE  135 (292)
T ss_pred             H-HHhcCCCEEEEcC--c------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH---hhc--CCcc
Confidence            6 5799999999986  2            22334455566777776 56644  3566554432121   221  2356


Q ss_pred             ceeeccccc
Q 016424          182 KLLGVTMLD  190 (390)
Q Consensus       182 kviG~t~Ld  190 (390)
                      |++|+..++
T Consensus       136 r~~g~h~~~  144 (292)
T PRK07530        136 RFIGIHFMN  144 (292)
T ss_pred             cEEEeeccC
Confidence            888886655

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.11  E-value=3.4e-05  Score=75.86  Aligned_cols=120  Identities=23%  Similarity=0.327  Sum_probs=72.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcc----c-------CCCeEEEEeCCCChhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----D-------TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~----~-------~~~~v~~~~~t~dl~~al  107 (390)
                      .+||+|||+ |.+|..++..++..+.  ++++||.+.  .......+.+.    .       ...+++.   ++|+.+++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence            469999999 9999999999998886  899999987  22211111110    0       0112343   35677789


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      ++||+||++.-              ....+..++...+..+++ ++++  .||...+...-++   ....  .+.+++|+
T Consensus        78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~~l~---~~~~--~~~~~ig~  136 (311)
T PRK06130         78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPITAIA---QAVT--RPERFVGT  136 (311)
T ss_pred             ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHHHHH---hhcC--CcccEEEE
Confidence            99999999861              123334455556666664 4443  4665554432221   2221  24677877


Q ss_pred             c
Q 016424          187 T  187 (390)
Q Consensus       187 t  187 (390)
                      .
T Consensus       137 h  137 (311)
T PRK06130        137 H  137 (311)
T ss_pred             c
Confidence            4

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.09  E-value=2.3e-05  Score=76.34  Aligned_cols=121  Identities=17%  Similarity=0.265  Sum_probs=73.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHH---HHh-----c--cc------CCCeEEEEeCCCCh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA---DIS-----H--MD------TGAVVRGFLGQPQL  103 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~---DL~-----~--~~------~~~~v~~~~~t~dl  103 (390)
                      .||+|||+ |.+|..++..++..+.  ++++||+++  ......   ++.     .  ..      ....++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            58999999 9999999999998887  899999987  111111   110     0  00      0123443   3577


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 016424          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  182 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~k  182 (390)
                      .+++++||+||.+..              .+..+...+...+.++++ ++++  .+|...+-...+++    ... .+.+
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~~~~~l~~----~~~-~~~r  134 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTMSPTEIAS----FTK-RPER  134 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHh----hcC-Cccc
Confidence            789999999999862              223445555566777774 5543  45555433222222    111 2456


Q ss_pred             eeecccc
Q 016424          183 LLGVTML  189 (390)
Q Consensus       183 viG~t~L  189 (390)
                      ++|+..+
T Consensus       135 ~~g~h~~  141 (288)
T PRK09260        135 VIAMHFF  141 (288)
T ss_pred             EEEEecC
Confidence            7777443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.05  E-value=4.3e-05  Score=80.56  Aligned_cols=122  Identities=20%  Similarity=0.309  Sum_probs=79.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hhcc---c---------CCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-ISHM---D---------TGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~~~---~---------~~~~v~~~~~t~d  102 (390)
                      ..||+|||+ |.+|..++..++..++  ++++||++.  + .+  ...+ +...   .         ...+++.   +++
T Consensus         7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~   80 (507)
T PRK08268          7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA   80 (507)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            468999999 9999999999999988  999999987  1 11  1111 1111   0         0134665   346


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~  181 (390)
                      + +++++||+||.+.              .++..+-+.+...++..+ |++++  +||-..+-..-+++    ... .|.
T Consensus        81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~la~----~~~-~p~  138 (507)
T PRK08268         81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAIAA----ALK-HPE  138 (507)
T ss_pred             H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHh----hcC-Ccc
Confidence            6 5689999999986              455667777777888888 56644  56665544322222    212 256


Q ss_pred             ceeeccccc
Q 016424          182 KLLGVTMLD  190 (390)
Q Consensus       182 kviG~t~Ld  190 (390)
                      |++|+..++
T Consensus       139 r~~G~hff~  147 (507)
T PRK08268        139 RVAGLHFFN  147 (507)
T ss_pred             cEEEEeecC
Confidence            777775444

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.00  E-value=0.00011  Score=72.72  Aligned_cols=117  Identities=21%  Similarity=0.380  Sum_probs=80.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc--cc--------CCCeEEEEeCCCChhhhhCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD--------TGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~--~~--------~~~~v~~~~~t~dl~~al~dA  110 (390)
                      ++||+|||| |+-|.+++..|+.++.  +++||..++  ..+.|+..  ..        .+..++.   ++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence            479999999 9999999999999985  999999986  23333432  21        1234443   67999999999


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec---CCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS---NPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t---NPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      |+||+..  |              ...++++++++..+- ++..++.+|   +|-  ....+++++++.  +|.++ +++
T Consensus        73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~--t~~l~seii~e~--l~~~~-~~v  131 (329)
T COG0240          73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPE--TGRLLSEIIEEE--LPDNP-IAV  131 (329)
T ss_pred             CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCC--CcchHHHHHHHH--cCCCe-EEE
Confidence            9999974  2              335777777776443 678888886   333  223345666664  44444 444

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.99  E-value=0.00011  Score=75.35  Aligned_cols=119  Identities=24%  Similarity=0.327  Sum_probs=78.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc----------------CCCeEEEEeCCCChhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN  105 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~----------------~~~~v~~~~~t~dl~~  105 (390)
                      |||+|||. |.+|.+++..|+..+.  +++.||++..+  +.+|....                ...+++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999999 9999999999998887  89999998621  12222210                0123443   357778


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~  174 (390)
                      ++++||+||++.+.|.....      .-+...+.+.++.+.++. ++.++++. |-|.+....+..+++.+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999988865422      123444555566666654 55555544 46666665555455444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.95  E-value=8.1e-05  Score=75.94  Aligned_cols=113  Identities=19%  Similarity=0.248  Sum_probs=71.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc------------c--CCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------D--TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~------------~--~~~~v~~~~~t~dl~~al  107 (390)
                      |||+|||+ |.||.+++..++. +.  +++.||+++.+  +..+...            .  ...+++.   +++..++.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~~---t~~~~~~~   71 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFNA---TLDKNEAY   71 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEEE---ecchhhhh
Confidence            69999999 9999999987775 54  89999998721  1112210            0  1123332   45667888


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHH
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIA  168 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~  168 (390)
                      ++||+||++.+.|......     .-+...++++++.|.+..|+.++++- |-|.+..-.+.
T Consensus        72 ~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~  128 (388)
T PRK15057         72 RDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH  128 (388)
T ss_pred             cCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence            9999999998777432211     12334455555666554566655544 67777765544

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.95  E-value=7.4e-05  Score=78.51  Aligned_cols=104  Identities=14%  Similarity=0.102  Sum_probs=69.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHH-------Hhcc---c--CCCeEEEEeCCCChhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD-------ISHM---D--TGAVVRGFLGQPQLENA  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~D-------L~~~---~--~~~~v~~~~~t~dl~~a  106 (390)
                      .+||+|||+ |.+|+.++..++..+.  +|.+||+++.  ......       +...   .  ...+++.   ++|+.++
T Consensus         4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea   77 (495)
T PRK07531          4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEA   77 (495)
T ss_pred             cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHH
Confidence            369999999 9999999999999887  9999999871  111110       1100   0  0113443   3577789


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t  165 (390)
                      +++||+|+.+.              ..+..+..++...+.+++|... ++.||-.++..
T Consensus        78 ~~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         78 VAGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             hcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            99999999986              2334455566666777775443 45777776554

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.94  E-value=0.00012  Score=72.26  Aligned_cols=123  Identities=21%  Similarity=0.230  Sum_probs=74.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHH--------HHhcccC---------CCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------GAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~--------DL~~~~~---------~~~v~~~~~t~d  102 (390)
                      ++||+|||+ |.+|..++..++..+.  +|++||.++. ...+.        .+.....         ..+++.   ++|
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            468999999 9999999999999887  8999999861 11111        1211110         123444   357


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  182 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~k  182 (390)
                      +.+++++||+|+.+.              ..+..+...+...+.+.+++..++ .||-......-++   ....  .+.+
T Consensus        76 ~~~a~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~~~~la---~~~~--~~~~  135 (308)
T PRK06129         76 LADAVADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSALLASAFT---EHLA--GRER  135 (308)
T ss_pred             HHHhhCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCCCHHHHH---HhcC--Cccc
Confidence            878899999999986              122334444555677777655444 4555444332222   2221  2456


Q ss_pred             eeecccc
Q 016424          183 LLGVTML  189 (390)
Q Consensus       183 viG~t~L  189 (390)
                      +++...+
T Consensus       136 ~~~~hp~  142 (308)
T PRK06129        136 CLVAHPI  142 (308)
T ss_pred             EEEEecC
Confidence            7776544

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.91  E-value=0.00013  Score=71.32  Aligned_cols=123  Identities=21%  Similarity=0.327  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHH--------HHHhcccC---------CCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT--------ADISHMDT---------GAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a--------~DL~~~~~---------~~~v~~~~~t~d  102 (390)
                      ..||+|||+ |.+|..++..++..+.  +|++||.+. ....+        .++.+...         ...++.   +++
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~   77 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN   77 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence            468999999 9999999999998886  999999986 11111        11211110         012333   345


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~  181 (390)
                      + +++++||+||.+.              ..+..+...+...+.+++ |++++  +||-..+...-++    .... .+.
T Consensus        78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~~~~l~----~~~~-~~~  135 (295)
T PLN02545         78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSISITRLA----SATQ-RPQ  135 (295)
T ss_pred             H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC-CCc
Confidence            5 6799999999986              334455566666677776 55643  4666655432222    2211 246


Q ss_pred             ceeecccccH
Q 016424          182 KLLGVTMLDV  191 (390)
Q Consensus       182 kviG~t~Lds  191 (390)
                      +++|+..++.
T Consensus       136 r~~g~h~~~p  145 (295)
T PLN02545        136 QVIGMHFMNP  145 (295)
T ss_pred             ceEEEeccCC
Confidence            8888865554

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.84  E-value=7.1e-05  Score=60.42  Aligned_cols=94  Identities=21%  Similarity=0.241  Sum_probs=63.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEE-eCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~-Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ||+|||+ |++|+.++..+...+ ...++.++ +.+.  ..+.++.... .  +..+  +.+..+++++||+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            8999999 999999999888877 34588866 8875  2223332221 1  2222  2245799999999999972  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                        |.            .+.++++.+....++..+|-++||
T Consensus        71 --p~------------~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --PQ------------QLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --GG------------GHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --HH------------HHHHHHHHHhhccCCCEEEEeCCC
Confidence              22            256777777556688888888876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.79  E-value=0.00019  Score=70.51  Aligned_cols=101  Identities=22%  Similarity=0.342  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhccc------CCCeEEEEeCCCChhhhhCCCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~------~~~~v~~~~~t~dl~~al~dADi  112 (390)
                      ||||+|||+ |.+|+.++..|...+.  ++.+||.+..  .....+..+..      ....++.   +++..+++++||+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            579999999 9999999999998876  8999999752  22222111110      0112333   3466678899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~  163 (390)
                      ||++...                ..+.++.+.+..+. |+.+++..+|-++.
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            9998631                12345555565553 67788888776553

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.71  E-value=0.00033  Score=68.30  Aligned_cols=123  Identities=11%  Similarity=0.143  Sum_probs=73.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh-ccc-CCCeEEEE-eCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMD-TGAVVRGF-LGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~-~~~-~~~~v~~~-~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||+ |.+|..++..|...+.  ++.+++..+......+-. ... ...+.... ...+|..++.+++|+||++..
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk   77 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK   77 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence            69999999 9999999999998876  899999832111111100 000 00111110 012455555689999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-eccccc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTMLD  190 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~Ld  190 (390)
                      .+.                +.++.+.+..+ .++..|+.+.|.++....     +.+.  +++.+++ |++...
T Consensus        78 ~~~----------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~~--~~~~~v~~g~~~~~  128 (305)
T PRK12921         78 AYQ----------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEPY--FGRERVLGGVVFIS  128 (305)
T ss_pred             ccC----------------HHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHHh--CCcccEEEEEEEEE
Confidence            221                33444555554 367778888999875532     2332  5666777 445443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.71  E-value=0.00046  Score=67.05  Aligned_cols=120  Identities=22%  Similarity=0.275  Sum_probs=71.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h-HHHHHHHhcc-cCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~-~g~a~DL~~~-~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||+ |.+|+.++..|...+.  ++.++|.+. . .....+-... ......... .+++..+ ++++|+||++..
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~d~vila~k   75 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVL-AADDPAE-LGPQDLVILAVK   75 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeeccc-CCCChhH-cCCCCEEEEecc
Confidence            68999999 9999999999998875  899999864 1 1111110000 000011111 1345544 499999999973


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-ecccc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML  189 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~L  189 (390)
                      ...                ..++.+.+..+ .++..|+...|.++....+     .+.  +++.+++ |++..
T Consensus        76 ~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l-----~~~--~~~~~i~~~~~~~  125 (304)
T PRK06522         76 AYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEEL-----AAY--IGPERVLGGVVTH  125 (304)
T ss_pred             ccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHH-----HHh--cCcccEEEEEEEE
Confidence            221                33444445443 4677888899998765432     222  4455665 44443

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.69  E-value=0.00053  Score=70.82  Aligned_cols=120  Identities=14%  Similarity=0.146  Sum_probs=75.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC------------CCeEEEEeCCCChhhh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENA  106 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~------------~~~v~~~~~t~dl~~a  106 (390)
                      ..+|||+|||. |.||.+++..++.. .  +++.||+++.  .+.+|.....            ...+..   +++. ++
T Consensus         4 ~~~mkI~vIGl-GyvGlpmA~~la~~-~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~   73 (425)
T PRK15182          4 IDEVKIAIIGL-GYVGLPLAVEFGKS-R--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSEI-EK   73 (425)
T ss_pred             CCCCeEEEECc-CcchHHHHHHHhcC-C--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence            34689999999 99999999988774 4  9999999872  2233332110            112333   3454 57


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~  174 (390)
                      +++||+||++.+.|.+....      .+..-+....+.|.++. ++.++|+- |-|.+....++...+.+
T Consensus        74 ~~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~  137 (425)
T PRK15182         74 IKECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILAR  137 (425)
T ss_pred             HcCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHh
Confidence            99999999999998754221      22334444555666655 45555443 67777665444344443

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.67  E-value=0.00053  Score=68.09  Aligned_cols=101  Identities=19%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh-cccC---------CCeEEEEeCCCChhhhhCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMDT---------GAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~-~~~~---------~~~v~~~~~t~dl~~al~dA  110 (390)
                      +|||+|||+ |.+|+.++..|...+.  ++.++|.++......... +...         ..+++.   +++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAF---STDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEe---ccCh-hhccCC
Confidence            479999999 9999999999998886  899999864211111100 0000         011222   3455 678999


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST  164 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~  164 (390)
                      |+||++...+.                ..++.+.+..+ .++.+|+..+|.++..
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            99999874332                12334455554 4677787788987654

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.65  E-value=0.00034  Score=70.08  Aligned_cols=101  Identities=18%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc----cC-------CCeEEEEeCCCChhhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------GAVVRGFLGQPQLENA  106 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~----~~-------~~~v~~~~~t~dl~~a  106 (390)
                      .+++|||+|||+ |.+|+.++..|..++   ++++|..++.  .+.++...    ..       ...++.   ++|+.++
T Consensus         4 ~~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a   74 (341)
T PRK12439          4 AKREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEA   74 (341)
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHH
Confidence            467899999999 999999999999887   3678887652  22223211    11       113333   4577889


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcc
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS  163 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~  163 (390)
                      ++++|+||++.-                ...++++.+.+..+ .++..++.++|-++.
T Consensus        75 ~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         75 ANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             HhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            999999999862                22355666666655 367788888887764

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.60  E-value=0.00049  Score=64.19  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ||+++|+|+ |++|+.++..+...+.  |+.+--.+..+..+..-...  .+.++..    +.++|.+.||+||++.  |
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~~----~~~dA~~~aDVVvLAV--P   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITGG----SNEDAAALADVVVLAV--P   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--ccccccC----ChHHHHhcCCEEEEec--c
Confidence            689999999 9999999999999887  87777666522222211211  2345542    3479999999999985  2


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      .          ..    +.++.+.+...-.+-++|-.|||.
T Consensus        70 ~----------~a----~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          70 F----------EA----IPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             H----------HH----HHhHHHHHHHHhCCeEEEecCCCc
Confidence            1          22    334444444433467788889995

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=97.58  E-value=0.0008  Score=69.66  Aligned_cols=114  Identities=15%  Similarity=0.046  Sum_probs=76.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .+.|||.|+||+|.||+.++..|...+.  +|+.+|.... +...++.+.....+++.+.+ +-+..++.++|+||-+|+
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa  193 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLAC  193 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECce
Confidence            3459999999999999999999988876  8999997531 11111111111124444332 223456789999999987


Q ss_pred             CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...  ....+..+.+..|+.....+.+.+.+.+  ..+|+++
T Consensus       194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~S  233 (436)
T PLN02166        194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTS  233 (436)
T ss_pred             eccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence            432  2223456778899999999999998875  3555554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.58  E-value=0.0009  Score=68.89  Aligned_cols=110  Identities=22%  Similarity=0.213  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc--c--------------CCCeEEEEeCCCChh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--------------TGAVVRGFLGQPQLE  104 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~--~--------------~~~~v~~~~~t~dl~  104 (390)
                      ++||+|||. |.+|.+++..|+..+.  +++.||+++.+-..  +...  .              ....++.   +++  
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~--   72 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT--   72 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc--
Confidence            479999999 9999999999999886  89999998722111  2211  0              0122332   223  


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHH
Q 016424          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIA  168 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~  168 (390)
                        +++||+||++...|.+...      ..+...+.+.++.|.++. ++.+||+- |.|....-.+.
T Consensus        73 --~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~  130 (415)
T PRK11064         73 --PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA  130 (415)
T ss_pred             --cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence              3589999999988865432      223445556667777765 55665555 56877765554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.57  E-value=0.00058  Score=67.61  Aligned_cols=117  Identities=16%  Similarity=0.352  Sum_probs=72.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc----cc------CCCeEEEEeCCCChhhhh-CCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MD------TGAVVRGFLGQPQLENAL-TGM  110 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~----~~------~~~~v~~~~~t~dl~~al-~dA  110 (390)
                      |||+|||| |.+|+.++..|...+.  ++.||+.++.  .+..+..    ..      ....++.   ++|+.+++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            68999999 9999999999998875  8899999752  2222221    11      1123444   35676776 589


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCcccH-HHHHHHHHHhCCCCCCcee
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNSTV-PIAAEVFKKAGTYDPKKLL  184 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-~-~p~a~iiv~tNPvd~~t-~i~ae~~~~~s~~p~~kvi  184 (390)
                      |+||++..                ..-+.++.+.+.. + .++..++..+|=.+.-+ .+..+.+.+.  +|..++.
T Consensus        73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~--~~~~~~~  131 (326)
T PRK14620         73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEI--LPNNPIA  131 (326)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHH--cCCCceE
Confidence            99999861                1224455555554 3 46777787888764310 1123444543  4444544

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.56  E-value=0.00065  Score=68.79  Aligned_cols=99  Identities=15%  Similarity=0.262  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCC-----CcEEEEEeCCch---HHHHHHHhc--cc--------CCCeEEEEeCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISH--MD--------TGAVVRGFLGQP  101 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~-----~~eL~L~Di~~~---~g~a~DL~~--~~--------~~~~v~~~~~t~  101 (390)
                      +.+||+|||+ |.-|+++|..|..++.     ..++.||..++.   ...+.++.+  ..        .+..++.   ++
T Consensus        10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~---ts   85 (365)
T PTZ00345         10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA---VS   85 (365)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE---ec
Confidence            3479999999 9999999999988752     248999998862   234555653  21        1234554   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hC-CCcEEEEec
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CC-PNATVNLIS  158 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~--~~-p~a~iiv~t  158 (390)
                      |+.+++++||+||++.  |              ...++++++.+..  +- +++++|.++
T Consensus        86 dl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         86 DLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             CHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence            8889999999999875  1              2346677777775  32 355565554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.52  E-value=0.00056  Score=67.38  Aligned_cols=80  Identities=23%  Similarity=0.286  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..|||+|||+ |.+|++++..|...+.  +|.+||.+..                      +++.+++++||+||++.- 
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp-   56 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS-   56 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence            3579999999 9999999999999887  8999998741                      245688899999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  160 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~tNP  160 (390)
                                     ...+.++++.+..+  .++.+++..|+.
T Consensus        57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         57 ---------------MKGVRPVAEQVQALNLPPETIIVTATKG   84 (308)
T ss_pred             ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence                           12355566666553  467788887873

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.48  E-value=0.00083  Score=67.46  Aligned_cols=96  Identities=22%  Similarity=0.385  Sum_probs=64.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC------CCcEEEEEeCCc---hHHHHHHHh--ccc--C------CCeEEEEeCCCCh
Q 016424           43 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------GAVVRGFLGQPQL  103 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~------~~~eL~L~Di~~---~~g~a~DL~--~~~--~------~~~v~~~~~t~dl  103 (390)
                      ||+|||+ |+.|.+++..|..++      +..++.||..++   -..++..++  |..  .      +..++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            7999999 999999999998876      225999999843   222333333  221  1      224554   4689


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      .+++++||+||++.  |              ...++++++.+..+- ++..++.+|
T Consensus        77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t  116 (342)
T TIGR03376        77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI  116 (342)
T ss_pred             HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            99999999999984  2              234666666666553 455566664

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.48  E-value=0.00095  Score=66.22  Aligned_cols=95  Identities=21%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc--------c--CCCeEEEEeCCCChhhhhCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------D--TGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~--------~--~~~~v~~~~~t~dl~~al~dA  110 (390)
                      +|||+|||+ |.+|+.++..|...+.  ++.+||.+....  .++...        .  ....++.   ++++.++++++
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~a   75 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFA--AALAAERENREYLPGVALPAELYP---TADPEEALAGA   75 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCC
Confidence            689999999 9999999999998876  899999975221  112111        0  0112333   34677889999


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      |+||++....                .++++.+   ...|+..++.++|.++
T Consensus        76 D~Vi~~v~~~----------------~~~~v~~---~l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         76 DFAVVAVPSK----------------ALRETLA---GLPRALGYVSCAKGLA  108 (328)
T ss_pred             CEEEEECchH----------------HHHHHHH---hcCcCCEEEEEeeccc
Confidence            9999986211                0233332   2346777888888654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.47  E-value=0.00066  Score=60.67  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=47.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |+||++||. |.+|+.++..|...+.  +|+.||++.  ..+.++.+..    ++..   .++.+++++||+|+++.
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec
Confidence            689999999 9999999999998887  899999875  2233344322    4432   46789999999999984

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN00198 anthocyanidin reductase; Provisional

Probab=97.42  E-value=0.0034  Score=61.94  Aligned_cols=117  Identities=16%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI  114 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVI  114 (390)
                      ++++|.|.||+|.+|+.++..|...+.  +|+.++.+. ......++.......+++.+.+    ..++.++++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            357999999999999999999988876  777676654 2222122221111123443332    123556788999999


Q ss_pred             EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.|+.......+ ..+++..|+.-...+.+.+.+...-..++++|
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S  130 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS  130 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence            988743221122 23456789999999999888764223444443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.41  E-value=0.0011  Score=65.51  Aligned_cols=122  Identities=16%  Similarity=0.272  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHH---HhcccCC---CeEEEEeCCCChhhhhCCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD---ISHMDTG---AVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~D---L~~~~~~---~~v~~~~~t~dl~~al~dADi  112 (390)
                      ..+|||+|||+ |.+|..++..|...+.  ++.+++.+........   +......   ..+...   ++. ++...+|+
T Consensus         3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~D~   75 (313)
T PRK06249          3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAY---RSA-EDMPPCDW   75 (313)
T ss_pred             CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEE---cch-hhcCCCCE
Confidence            34589999999 9999999999998876  8899988762211110   0000000   112221   232 45789999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-cccc
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  190 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Ld  190 (390)
                      ||++.....                ..++.+.+... .|++.++...|=++..-     .+.+.  +|+.+|++- +...
T Consensus        76 vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~~--~~~~~v~~g~~~~~  132 (313)
T PRK06249         76 VLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLREI--LPAEHLLGGLCFIC  132 (313)
T ss_pred             EEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHH--CCCCcEEEEeeeEe
Confidence            999963221                12333344443 47888888999887543     23332  677787754 5543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=97.40  E-value=0.004  Score=60.67  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhccc-CCCeEEEEeC----CCChhhhhCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGFLG----QPQLENALTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~-~~~~v~~~~~----t~dl~~al~dADiV  113 (390)
                      +.+||.|+||+|.+|+.++..|...+.  +++.++.+.. ......+.... ...+++.+.+    ..++.++++++|+|
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   80 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV   80 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence            357999999999999999999988886  7877777652 11122222111 0123333322    23466788999999


Q ss_pred             EEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEe
Q 016424          114 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKC-CPNATVNLI  157 (390)
Q Consensus       114 Ii~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~  157 (390)
                      |-.++........ ..+.+..|+.-...+.+.+.+. ... .++++
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~  125 (322)
T PLN02662         81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT  125 (322)
T ss_pred             EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence            9998754321122 2356778999899999888765 333 34444

>PLN02427 UDP-apiose/xylose synthase

Probab=97.35  E-value=0.0022  Score=64.69  Aligned_cols=115  Identities=16%  Similarity=0.071  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcc---cCCCeEEEEeC----CCChhhhhCCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHM---DTGAVVRGFLG----QPQLENALTGM  110 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~---~~~~~v~~~~~----t~dl~~al~dA  110 (390)
                      .++|||.|+||+|.+|+.++..|...+ .  +|+.+|.+...  ...+...   ....+++...+    ..++.++++++
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            346899999999999999999888764 4  88888875411  1112111   01123444332    12456778899


Q ss_pred             cEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          111 DLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       111 DiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |+||-+|+......  ....+.+..|+.-...+.+...+..  ..++.+|.
T Consensus        88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            99999987542211  2223455677776777777776654  35665553

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.32  E-value=0.0012  Score=64.67  Aligned_cols=77  Identities=25%  Similarity=0.324  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+..||+|+|| |++|.++++.|...+ +.+|.++|++.  +++.+.++.+...  .+.... .+++.++++++|+||.+
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G-~~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~~-~~~~~~~~~~aDiVIna  199 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLG-VERLTIFDVDPARAAALADELNARFP--AARATA-GSDLAAALAAADGLVHA  199 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhCC--CeEEEe-ccchHhhhCCCCEEEEC
Confidence            34579999999 999999999998877 56899999987  4556666655321  223221 23556678999999997


Q ss_pred             --CCCC
Q 016424          117 --AGVP  120 (390)
Q Consensus       117 --ag~p  120 (390)
                        +|.+
T Consensus       200 Tp~Gm~  205 (284)
T PRK12549        200 TPTGMA  205 (284)
T ss_pred             CcCCCC
Confidence              5553

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.30  E-value=0.0047  Score=61.03  Aligned_cols=113  Identities=18%  Similarity=0.247  Sum_probs=75.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVI  114 (390)
                      .++|.|+||+|++|+.++..|+..+...+|+++|.+...  ....++..    ..+..+.+    ..++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            468999999999999999988876533488999976522  12222221    23333322    124556788999999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..+|....+  ..+..+.+..|+.-...+.+.+.+.+.. .++++|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            998864322  2344567889999899999988876533 455554

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=97.28  E-value=0.0012  Score=64.89  Aligned_cols=121  Identities=20%  Similarity=0.180  Sum_probs=75.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEE----EeCC----CChhhhhC--CCc
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG----FLGQ----PQLENALT--GMD  111 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~----~~~t----~dl~~al~--dAD  111 (390)
                      |.|.||+|++|+.++..|+..++ .+|+|+|.++  +.....++.......+++.    ..++    ..+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            67999999999999998888764 6899999998  4555566642211122221    1221    23456777  999


Q ss_pred             EEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCcccH
Q 016424          112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV  165 (390)
Q Consensus       112 iVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t----NPvd~~t  165 (390)
                      +|+-+|....-|-  ..-.+.+..|+-=-+.+++...+++-+-+|.+-|    ||+++|-
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG  139 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG  139 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH
Confidence            9999987544332  2446778899999999999999988777666654    7877763

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02650 dihydroflavonol-4-reductase

Probab=97.27  E-value=0.0064  Score=60.43  Aligned_cols=118  Identities=13%  Similarity=0.078  Sum_probs=73.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcc-cCCCeEEEEeC----CCChhhhhCCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~-~~~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      +..++|.|.||+|.+|+.++..|+..+.  +|++++.+. ......++... ....++..+.+    ...+.++++++|+
T Consensus         3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~   80 (351)
T PLN02650          3 SQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG   80 (351)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence            3456999999999999999999988876  788777765 11111222211 11122333222    1245677889999


Q ss_pred             EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-+++.......+ ..+.+..|+.-...+.+.+.++..-..++++|
T Consensus        81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S  127 (351)
T PLN02650         81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS  127 (351)
T ss_pred             EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            99998743211112 23566788888888888887765323555554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.25  E-value=0.0014  Score=56.97  Aligned_cols=76  Identities=20%  Similarity=0.306  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      -+..+|.|||| |++|..++..|...+ +.+|.+++++.  +...+..+    ....+.... .+++.+.+.++|+||.+
T Consensus        10 l~~~~vlviGa-Gg~ar~v~~~L~~~g-~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~a   82 (135)
T PF01488_consen   10 LKGKRVLVIGA-GGAARAVAAALAALG-AKEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVINA   82 (135)
T ss_dssp             GTTSEEEEESS-SHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE-
T ss_pred             cCCCEEEEECC-HHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEEe
Confidence            45679999999 999999999998886 46899999975  23333333    223455543 35777889999999998


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      .+.+.
T Consensus        83 T~~~~   87 (135)
T PF01488_consen   83 TPSGM   87 (135)
T ss_dssp             SSTTS
T ss_pred             cCCCC
Confidence            76654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.25  E-value=0.0028  Score=58.89  Aligned_cols=75  Identities=20%  Similarity=0.286  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH-------------H--HHHHHhcccCCCeEEEEeC-
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP-------------G--VTADISHMDTGAVVRGFLG-   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~-------------g--~a~DL~~~~~~~~v~~~~~-   99 (390)
                      ..||.|+|+ |++|+.++..|+..+ +.+|+|+|.+.     +.             .  ...-|.+.....++..+.. 
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~   98 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAG-IGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK   98 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcC-CCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence            359999999 999999999999888 46899999982     10             0  1112222222234443221 


Q ss_pred             --CCChhhhhCCCcEEEEcC
Q 016424          100 --QPQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 --t~dl~~al~dADiVIi~a  117 (390)
                        .+++.+.++++|+||-+.
T Consensus        99 i~~~~~~~~~~~~DlVi~a~  118 (200)
T TIGR02354        99 ITEENIDKFFKDADIVCEAF  118 (200)
T ss_pred             CCHhHHHHHhcCCCEEEECC
Confidence              234455688999999884

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.23  E-value=0.0039  Score=63.48  Aligned_cols=153  Identities=22%  Similarity=0.173  Sum_probs=85.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhccc-CCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~-~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |+||.|||| |+||++++..|++++. .+|++-|.... ...+.+..+.. ....+... ....+.+.+++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence            579999999 9999999999999885 79999999752 22222222111 01222221 12356789999999999974


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc---cccHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT---MLDVVRAN  195 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t---~Lds~R~~  195 (390)
                      .+.                -..+++++.+..-+  ++-.|+-.+.. .-..+.+++++.   .=++++.   -++..-+.
T Consensus        78 ~~~----------------~~~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~Agi---t~v~~~G~dPGi~nv~a~  135 (389)
T COG1748          78 PFV----------------DLTILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKAGI---TAVLGCGFDPGITNVLAA  135 (389)
T ss_pred             chh----------------hHHHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHcCe---EEEcccCcCcchHHHHHH
Confidence            332                11344444444322  44455555543 333344455431   1122221   13333334


Q ss_pred             HHHHHHhCCCCCCCceEE--eecccC
Q 016424          196 TFVAEVLGLDPRDVDVPV--VGGHAG  219 (390)
Q Consensus       196 ~~la~~l~v~p~~V~~~V--iG~Hg~  219 (390)
                      +...+.. =..++++.++  +|+|+.
T Consensus       136 ~a~~~~~-~~i~si~iy~g~~g~~~~  160 (389)
T COG1748         136 YAAKELF-DEIESIDIYVGGLGEHGD  160 (389)
T ss_pred             HHHHHhh-ccccEEEEEEecCCCCCC
Confidence            4444443 2566666665  458883

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.22  E-value=0.0041  Score=55.49  Aligned_cols=93  Identities=25%  Similarity=0.310  Sum_probs=66.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEcCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~ag~  119 (390)
                      |+|+||+|.+|+.++..|...+.  +|+++-.+..+.  .+      ...++.+.++    +++.++++++|.||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~--~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKA--ED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGH--HH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhc--cc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999885  888888876321  11      2344444432    2457889999999999976


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.+           ....++.+.+.+++.... .++++|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            654           166777888888776533 444443

...

>PLN02206 UDP-glucuronate decarboxylase

Probab=97.21  E-value=0.0035  Score=65.02  Aligned_cols=113  Identities=17%  Similarity=0.091  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +.|||.|+||+|.||+.++..|...+.  +|+.+|.... +....+.+.....+++...+. -+..++.++|+||-+|+.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~D-~~~~~l~~~D~ViHlAa~  193 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRHD-VVEPILLEVDQIYHLACP  193 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEECC-ccChhhcCCCEEEEeeee
Confidence            568999999999999999999988876  8888886431 111111111112334443322 233567899999999875


Q ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..  ....+-...+..|+.....+.+.+.+..  ..+|+++
T Consensus       194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S  232 (442)
T PLN02206        194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS  232 (442)
T ss_pred             cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence            32  2122345677899999999999888765  3565554

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=97.20  E-value=0.0025  Score=62.05  Aligned_cols=113  Identities=17%  Similarity=0.260  Sum_probs=77.9

Q ss_pred             EEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           45 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        45 ~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      .|+||+|.+|+.++..|...+...+|+..|+........++.+...    ..+++-   ..++.+|++|+|+||-+|..-
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d---~~~l~~a~~g~d~V~H~Aa~~   77 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITD---PESLEEALEGVDVVFHTAAPV   77 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEecccc---HHHHHHHhcCCceEEEeCccc
Confidence            3889999999999999998886779999998762222122332211    123332   357889999999999998743


Q ss_pred             CCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          121 RKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       121 ~k~g-~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      --.+ ..+..+..-|+.-.+.+.+++.+..-..  +|+|.-.+
T Consensus        78 ~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkr--lVytSS~~  118 (280)
T PF01073_consen   78 PPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKR--LVYTSSIS  118 (280)
T ss_pred             cccCcccHHHHHHHHHHHHHHHHHHHHHcCCCE--EEEEcCcc
Confidence            2233 4566788899999999999988775433  44544443

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=97.18  E-value=0.0036  Score=60.25  Aligned_cols=113  Identities=19%  Similarity=0.124  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeC----CCChhhhhCC--CcEE
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDLV  113 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d--ADiV  113 (390)
                      ||.|+||+|.+|+.++..|...+...++++.|....   .....++..   ...+..+.+    ..++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED---NPRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc---CCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999998877653347888886431   111122221   122333221    1245566776  8999


Q ss_pred             EEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |..++....  ....-...+..|+.....+++.+.+...+..++.+|
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S  124 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS  124 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            999875321  112334567789888899999888876555566554

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.18  E-value=0.0066  Score=64.77  Aligned_cols=117  Identities=14%  Similarity=0.089  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcc-----c--CCCeEEEEeCC----CChhh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM-----D--TGAVVRGFLGQ----PQLEN  105 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~-----~--~~~~v~~~~~t----~dl~~  105 (390)
                      +..+.|.|+||+|++|..++..|+..+.  +|++++.+.  ......++.+.     .  ...++.++.+.    .++.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~  155 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP  155 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence            3456899999999999999999888876  888888876  22233333211     1  01123333221    24556


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++.++|+||.++|........-...+..|......+.+.+.+..-+ .||+++
T Consensus       156 aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        156 ALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             HhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            7899999999988754322222233456777777888887766533 455554

>PRK07680 late competence protein ComER; Validated

Probab=97.15  E-value=0.0036  Score=60.47  Aligned_cols=97  Identities=16%  Similarity=0.224  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |||+|||+ |.+|..++..|...+.  ..++.++|.+...  ...+.+..  ..++..   .+..+++++||+||++.. 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~~---~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHVA---KTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEEE---CCHHHHHHhCCEEEEecC-
Confidence            58999999 9999999998887763  3579999997521  12232211  123332   355677899999999871 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  162 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd  162 (390)
                      |               ..+.++.+.+..+ .++.+|+.++|++.
T Consensus        72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1               1133444555444 36778888898874

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.15  E-value=0.013  Score=57.34  Aligned_cols=117  Identities=17%  Similarity=0.125  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcc-cCCCeEEEEeC----CCChhhhhCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTGAVVRGFLG----QPQLENALTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~-~~~~~v~~~~~----t~dl~~al~dADiV  113 (390)
                      ++++|.|+||+|+||+.++..|...+.  ++++.+.+.. ......+... ....+++.+.+    ..++.+++++.|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            357999999999999999999998876  7777776651 1111112111 11123333322    23456678899999


Q ss_pred             EEcCCCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKP-GM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~-g~-~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |..+|..... .. .-...+..|+.-...+.+.+.++.....++++|
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S  128 (325)
T PLN02989         82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS  128 (325)
T ss_pred             EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence            9999853221 11 223556788888888888887754223455443

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.12  E-value=0.0023  Score=62.93  Aligned_cols=105  Identities=11%  Similarity=0.061  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi~a  117 (390)
                      |||.|+||+|.+|+.++..|...+.  +++.++.+....  ..+.+.    .++.+.+    ..++.++++++|+||.++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~----~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEW----GAELVYGDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhc----CCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence            6999999999999999999988886  888888764211  112211    1222222    234678899999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +....   ...+....|......+.+++.+.+-+ .+|.+|
T Consensus        73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            53221   11223455666777888888777644 344444

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=97.12  E-value=0.0062  Score=66.25  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=76.9

Q ss_pred             hhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC----
Q 016424           29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----  102 (390)
Q Consensus        29 ~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d----  102 (390)
                      ++..|.   +.++|||.|+||+|.+|+.++..|... +.  +|+.+|.+... . .++..   ...++.+.+. +|    
T Consensus       306 ~~~~~~---~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~---~~~~~~~~gDl~d~~~~  375 (660)
T PRK08125        306 SKPACS---AKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLG---HPRFHFVEGDISIHSEW  375 (660)
T ss_pred             ccchhh---hhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcC---CCceEEEeccccCcHHH
Confidence            344443   467889999999999999999988864 55  88989986521 1 11111   1123333221 11    


Q ss_pred             hhhhhCCCcEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          103 LENALTGMDLVIIPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.++++++|+||-.|+...  .......++...|+.....+.+++.++.  -.++.+|
T Consensus       376 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~S  431 (660)
T PRK08125        376 IEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPS  431 (660)
T ss_pred             HHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEc
Confidence            3457889999999887543  2223445677888888889999988875  2455444

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.11  E-value=0.0037  Score=60.70  Aligned_cols=64  Identities=23%  Similarity=0.256  Sum_probs=45.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||+ |.+|..++..|...+.  +|.+||.++ ....+.+..      .+...  +++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g------~~~~~--~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERG------LVDEA--STDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCC------Ccccc--cCCH-hHhcCCCEEEEcC
Confidence            58999999 9999999999998876  899999976 222222211      11111  2344 5789999999996

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.0076  Score=63.62  Aligned_cols=127  Identities=19%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC----CChhhhhCC--
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ----PQLENALTG--  109 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~d--  109 (390)
                      .-+.+.|.|.||+|++|+.+...++..+ ..+|+++|.++  ....-.+|.+.....+++.+-|+    +-++.++++  
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~k  325 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHK  325 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCC
Confidence            4456799999999999999998887764 46999999998  34455666653212444444432    345678889  


Q ss_pred             CcEEEEcCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCcccH
Q 016424          110 MDLVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV  165 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~--r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t----NPvd~~t  165 (390)
                      .|+|+=+|....-|-++  -.+-...|+-=-+.++++..++.=+..+++-|    ||+|+|-
T Consensus       326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmG  387 (588)
T COG1086         326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMG  387 (588)
T ss_pred             CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhh
Confidence            99999999877666543  45678899999999999999888666666654    8888773

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.03  E-value=0.0034  Score=61.69  Aligned_cols=68  Identities=26%  Similarity=0.243  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .+||+|||+ |.+|..++..+...+...++.+||.++ ....+.+.   .  .....   ..++.+++++||+||++.
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~---g--~~~~~---~~~~~~~~~~aDvViiav   74 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL---G--LGDRV---TTSAAEAVKGADLVILCV   74 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC---C--CCcee---cCCHHHHhcCCCEEEECC
Confidence            369999999 999999999998887656899999986 22222221   1  11111   234567899999999997

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.03  E-value=0.0046  Score=59.26  Aligned_cols=96  Identities=14%  Similarity=0.157  Sum_probs=61.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +|||+|||+ |.+|..++..+...+. ..++.++|.+...  ...+.+..   .++.   +++..+.+.+||+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            579999999 9999999998887762 3578999997521  12222211   1222   2355677899999999861 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                                     ...+.++.+.+..+. +..|+..+|-+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           112445555555444 456777777653

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.02  E-value=0.015  Score=56.47  Aligned_cols=118  Identities=17%  Similarity=0.173  Sum_probs=78.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC----CCCh-------h
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQL-------E  104 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~----t~dl-------~  104 (390)
                      ..+++.+.|.|||++||..++..|+.++.  .|+|+..++  +...+.+|.+.. ...+.+...    ++++       .
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence            34567899999999999999999999998  999999988  677888888654 233333321    1111       1


Q ss_pred             hhhCCCcEEEEcCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          105 NALTGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g------~~r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      +..-..|+.|..||...-..      .+-.+++.-|+--...+...+...   +-.+-||+++
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~  142 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIG  142 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence            11226899999998754221      123466777876666666655443   2245566664

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.01  E-value=0.0056  Score=60.75  Aligned_cols=112  Identities=16%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             cHHHHHHHHHhCCCCcEEEEEeCCch--H--------H--HHHH-Hh----cc--c------CCCeEEEEeCCCChhhhh
Q 016424           53 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------G--VTAD-IS----HM--D------TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        53 vG~~~a~~l~~~~~~~eL~L~Di~~~--~--------g--~a~D-L~----~~--~------~~~~v~~~~~t~dl~~al  107 (390)
                      +|..++..++..++  +++|||+++.  .        +  ...+ +.    +.  .      ...+++..+ +.|+++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            46788888888888  9999999871  1        1  0111 11    00  0      124676532 23467889


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      ++||+||.+.              .++..+-+++...+.+.+ |++++  .||-..+...-+++.   . . .|.|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~---~-~-~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRH---V-A-HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhh---c-C-CcccEEEE
Confidence            9999999997              567778888888899998 56654  788877665433322   2 1 24677776


Q ss_pred             cc
Q 016424          187 TM  188 (390)
Q Consensus       187 t~  188 (390)
                      ..
T Consensus       137 Hf  138 (314)
T PRK08269        137 HW  138 (314)
T ss_pred             ec
Confidence            43

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.00  E-value=0.0043  Score=53.62  Aligned_cols=102  Identities=23%  Similarity=0.256  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..+||+|||+ |.||.+++..|...+.  +|.-+-.. ...-+..+.+..  .....    .++.+.+++||++|++.  
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~sr-s~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iav--   76 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSR-SPASAERAAAFI--GAGAI----LDLEEILRDADLVFIAV--   76 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSC-HH-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeC-Cccccccccccc--ccccc----cccccccccCCEEEEEe--
Confidence            4579999999 9999999999999886  55444332 223333444432  12222    23467899999999996  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--C-CCcEEEEe--cCCCcccHHH
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLI--SNPVNSTVPI  167 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~--~-p~a~iiv~--tNPvd~~t~i  167 (390)
                         |+.           .+.++++++..+  - |+.+|+=.  +-+++++.++
T Consensus        77 ---pDd-----------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   77 ---PDD-----------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             ----CC-----------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             ---chH-----------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence               221           367888888877  3 45444433  3677888764

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.98  E-value=0.012  Score=58.74  Aligned_cols=116  Identities=15%  Similarity=0.043  Sum_probs=74.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHh-ccc--CCCeEEEEeCC----CChhhhhCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS-HMD--TGAVVRGFLGQ----PQLENALTGM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~-~~~--~~~~v~~~~~t----~dl~~al~dA  110 (390)
                      +++||.|+||+|.+|+.++..|...+.  +|+.+|...  ......++. ...  ...+++.+.+.    .++.+.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            457999999999999999999988875  899999754  111111111 100  01234444321    1344567899


Q ss_pred             cEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          111 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       111 DiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |+||-.|+.+..+  .+........|+.-...+.+.+.+.... .++.+|
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~S  140 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAA  140 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEee
Confidence            9999998764322  1334556788999889999988877533 344443

>PLN02214 cinnamoyl-CoA reductase

Probab=96.98  E-value=0.016  Score=57.66  Aligned_cols=111  Identities=14%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--H-HHHHHHhcccCCCeEEEEeC----CCChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADISHMDTGAVVRGFLG----QPQLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~-g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dAD  111 (390)
                      .++++|.|+||+|.+|+.++..|...+.  +++..+.+..  . .....+...  ..++..+.+    ..++.++++++|
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d   83 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCD   83 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCC
Confidence            4567899999999999999999988886  7888877541  1 111222211  122333221    234667889999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      +||-+++...   ....+.+..|+.-...+.+.+.+.... .++++
T Consensus        84 ~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~  125 (342)
T PLN02214         84 GVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVIT  125 (342)
T ss_pred             EEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEe
Confidence            9999998542   234566778888888888888876543 34443

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.97  E-value=0.0068  Score=60.13  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-----CChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-----~dl~~al~dADiVI  114 (390)
                      ||||.|+||+|.+|+.++..|... +.  +|+.+|.....  ..++..   ...++.+.+.     ..+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVN---HPRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhcc---CCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            579999999999999999988865 44  89999875311  112211   1234433321     12335678999999


Q ss_pred             EcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -+++...  ....+-......|+.-.+.+.+.+.+..  ..++.+|
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~S  117 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPS  117 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEe
Confidence            8876432  2223334455667777778888877654  4555554

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.96  E-value=0.0044  Score=61.33  Aligned_cols=121  Identities=23%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHH---HHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~---DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|+|+ |.||+.+++.|.+.+  ..+.++-.++. ...-.   .+.+........... +++ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g--~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG--HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCC--CeEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence            79999999 999999999999988  36666665542 22111   111111101111111 223 46778999999997


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-eccccc
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTMLD  190 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~Ld  190 (390)
                      -..+                ..+..+.+..+. |+.+|+.+=|=++..     |.+++.  ++.++|+ |+|+..
T Consensus        76 Ka~q----------------~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~~--~~~~~il~G~~~~~  127 (307)
T COG1893          76 KAYQ----------------LEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRKI--LPKETVLGGVTTHG  127 (307)
T ss_pred             cccc----------------HHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHHh--CCcceEEEEEeeee
Confidence            3221                346666777766 677888888888876     333443  4455554 787653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.95  E-value=0.0069  Score=58.79  Aligned_cols=108  Identities=18%  Similarity=0.170  Sum_probs=71.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi~a  117 (390)
                      |||.|+||+|.+|+.++..|...+.  +++.+|.+....  .++.+.    .++...+    ..++.++++++|+||..+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~----~~~~~~~D~~~~~~l~~~~~~~d~vi~~a   72 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGL----DVEIVEGDLRDPASLRKAVAGCRALFHVA   72 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccC----CceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence            5899999999999999999988875  899999865211  112111    1222111    124567788999999988


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.......+.......|+.....+++.+.+.+-. .+++.+
T Consensus        73 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  112 (328)
T TIGR03466        73 ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS  112 (328)
T ss_pred             eecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            6532223345566778888888888888776533 344444

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.95  E-value=0.0056  Score=63.48  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=47.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+||||+|.+|..++..|...+.  ++.++|.+...  ..+.++       .+..   +++..+++.+||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~-------gv~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL-------GVEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc-------CCee---ccCHHHHhccCCEEEEec
Confidence            6899998659999999999998876  89999987522  222221       1222   346678899999999986

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.95  E-value=0.0059  Score=58.49  Aligned_cols=94  Identities=14%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEE-eCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~-Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||++||. |.+|+.++..|...+.  ..+|+.+ |.+...  ...+.+.    .++..   ++..+++++||+||++. 
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~~---~~~~e~~~~aDvVil~v-   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKTA---ASNTEVVKSSDVIILAV-   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEEe---CChHHHHhcCCEEEEEE-
Confidence            68999999 9999999999988764  4578888 776522  2223221    12322   34567789999999987 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  161 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPv  161 (390)
                      .|.               .+.++...+..+ .|+.++|..++.+
T Consensus        70 ~~~---------------~~~~vl~~l~~~~~~~~~iIs~~~g~   98 (266)
T PLN02688         70 KPQ---------------VVKDVLTELRPLLSKDKLLVSVAAGI   98 (266)
T ss_pred             CcH---------------HHHHHHHHHHhhcCCCCEEEEecCCC
Confidence            221               233444445444 3566666555554

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.94  E-value=0.0055  Score=60.15  Aligned_cols=95  Identities=16%  Similarity=0.158  Sum_probs=60.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+|||. |.+|++++..|...+.  +|.+||.+...  +..+....    ........++.++++++|+|+++...  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g----~~~~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDR----TTGVANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcC----CcccCCHHHHHhhcCCCCEEEEEcCc--
Confidence            58999999 9999999999998886  89999998621  22232211    11111112344456789999998511  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv  161 (390)
                                   - .+.++.+.+..+. ++.+++..||..
T Consensus        70 -------------~-~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 -------------G-IVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             -------------h-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                         1 3445555555554 667777777654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.89  E-value=0.01  Score=60.17  Aligned_cols=125  Identities=17%  Similarity=0.260  Sum_probs=78.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--H----HHH----HHHh----cccCCCeEEEEeCCCChhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P----GVT----ADIS----HMDTGAVVRGFLGQPQLENA  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~----g~a----~DL~----~~~~~~~v~~~~~t~dl~~a  106 (390)
                      .++|+|||- |.||.++|..++..+.  .+.=+|||..  .    |..    -++.    ..-...+++.   |+|. +.
T Consensus         9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~   81 (436)
T COG0677           9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE   81 (436)
T ss_pred             ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence            479999999 9999999999999887  8899999871  1    100    0111    1112356775   4575 55


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHhCCC
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTY  178 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~s~~  178 (390)
                      ++.||++||+.-.|.+...      .-.+..+..-++.|.++=..+-++++  |-|.+.+-.++--++...+|+
T Consensus        82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL  149 (436)
T COG0677          82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL  149 (436)
T ss_pred             cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC
Confidence            8899999999887765421      11233455666667666544433333  677776655443333333444

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.88  E-value=0.0066  Score=60.94  Aligned_cols=98  Identities=22%  Similarity=0.271  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      -..++|.|+||+|.+|+.++..|....-+.+|++++.+.  +...+.++.+    .++      .++.+++.++|+||..
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~----~~i------~~l~~~l~~aDiVv~~  222 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG----GKI------LSLEEALPEADIVVWV  222 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc----ccH------HhHHHHHccCCEEEEC
Confidence            345799999999999999999887543356899999875  3333333321    111      2567899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  164 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~  164 (390)
                      ++.|...-.+..++                  .+..+++=++.|=|+-
T Consensus       223 ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd  252 (340)
T PRK14982        223 ASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD  252 (340)
T ss_pred             CcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence            98875321222111                  3667888889997775

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.87  E-value=0.0069  Score=61.53  Aligned_cols=54  Identities=19%  Similarity=0.345  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..+||+|||+.|.+|..++..|...+.  ++.+||.+..                      ++..+++++||+||++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            457999999559999999999999886  8999998520                      13457789999999986

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=96.85  E-value=0.017  Score=56.68  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC--CCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~--dADiV  113 (390)
                      |||.|+||+|.+|+.++..|...+.  +++++|...  .......+.+.. ..++..+.+ -+|   +.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            6899999999999999998888775  888888643  111111222211 112222211 122   334454  58999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |..++.....  .....+.+..|+.....+++.+.+..-. .++.+|
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9998764321  1234567788999999999888876433 344443

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.83  E-value=0.014  Score=54.98  Aligned_cols=70  Identities=10%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +++||+|||+ |.+|..++..+...+  ...+++.++.... ....++.+..   .++.   ++|+.+.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence            3579999999 999999998887765  2455878876431 1122333211   1232   246678899999999985

>PRK06194 hypothetical protein; Provisional

Probab=96.82  E-value=0.039  Score=52.86  Aligned_cols=114  Identities=21%  Similarity=0.179  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      +++|.|+||+|++|+.++..|...+.  +|+++|.+.  ......++...  ..++..+.+. +|   +.++++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999998886  899999875  33344444332  2344433321 22   223333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHH----HHHHHHHhCCC-----cEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRT----LCEGIAKCCPN-----ATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~----ia~~I~~~~p~-----a~iiv~t  158 (390)
                       ..|+||..+|.....   ..+..   ..+..|+.-...    +.+.+.+.+.+     +.+++++
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~s  147 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTA  147 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeC
Confidence             369999999874321   12222   234555544444    44445554432     5566554

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.82  E-value=0.0093  Score=59.63  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|+|||. |.+|+.++..+...+.  +|+.||.+....  .+        .++.   +.++.+++++||+|++...
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~--------~~~~---~~~l~ell~~aDiVil~lP  207 (330)
T PRK12480        144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LD--------FLTY---KDSVKEAIKDADIISLHVP  207 (330)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hh--------hhhc---cCCHHHHHhcCCEEEEeCC
Confidence            35579999999 9999999999887776  899999875210  00        0111   2468899999999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      ..           ..+..++.  ...+....|++++|+++-=
T Consensus       208 ~t-----------~~t~~li~--~~~l~~mk~gavlIN~aRG  236 (330)
T PRK12480        208 AN-----------KESYHLFD--KAMFDHVKKGAILVNAARG  236 (330)
T ss_pred             Cc-----------HHHHHHHh--HHHHhcCCCCcEEEEcCCc
Confidence            21           11222221  2333344578999988743

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.80  E-value=0.0051  Score=57.11  Aligned_cols=75  Identities=23%  Similarity=0.350  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||.|+|+ |++|+.++..|+..+ +.+|.|+|.+.                     +...+..|.......+++.+..
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            459999999 999999999999888 46899999883                     1112233444333344444321


Q ss_pred             C---CChhhhhCCCcEEEEcC
Q 016424          100 Q---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 t---~dl~~al~dADiVIi~a  117 (390)
                      .   .++.+.++++|+||.+.
T Consensus        99 ~i~~~~~~~~~~~~D~Vi~~~  119 (202)
T TIGR02356        99 RVTAENLELLINNVDLVLDCT  119 (202)
T ss_pred             cCCHHHHHHHHhCCCEEEECC
Confidence            1   23445689999998885

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.77  E-value=0.016  Score=56.28  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |+||+|||+ |.+|..++..|...+.  ..+|++||.+... ....+....  ..++.   +++..++++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~--~~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY--PTVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc--CCeEE---eCCHHHHHhhCCEEEEecC
Confidence            479999999 9999999999887762  2589999986521 122222211  12332   2355678899999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~  163 (390)
                       |               ..+.++.+.+..+- ++..++.+.|-+++
T Consensus        74 -p---------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 -P---------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             -H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence             1               12445566665543 45667777776554

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.026  Score=52.65  Aligned_cols=115  Identities=19%  Similarity=0.053  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh----CCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL----TGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al----~dA  110 (390)
                      |++|.|+||+|++|..++..|+..+.  ++++.|.++  ......++.... ..++..+... +|   +++.+    +..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            46899999999999999999998876  899999886  233334443321 2244433221 22   22222    235


Q ss_pred             cEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          111 DLVIIPAGVPRK---PGMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       111 DiVIi~ag~p~k---~g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      |+||..+|....   .+.+..   +.+..|..-...+.+.+..+   ...+.++++|
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  134 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGIS  134 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            999998875321   123333   34556666555555555443   2345666665

>PLN02583 cinnamoyl-CoA reductase

Probab=96.75  E-value=0.041  Score=53.59  Aligned_cols=114  Identities=15%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h---HHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~---~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      .++|.|+||+|++|+.++..|...+.  ++++.+.+. .   .....++...  ..+++.+.+    ..++.++++++|.
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~   81 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSG   81 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCE
Confidence            45899999999999999999998886  788877643 1   1112222211  123333321    2345678999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |+-.++.+........+++..|+.-...+.+.+.+..--..+|++|
T Consensus        82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S  127 (297)
T PLN02583         82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS  127 (297)
T ss_pred             EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            9866554332111234567888888888888887753113444443

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.73  E-value=0.016  Score=56.86  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||++||- |.+|++++..|...++  +++.||.+..+. +..+....  ....     .+..++.++||+||++.
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~G--a~~a-----~s~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAG--ATVA-----ASPAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcC--Cccc-----CCHHHHHHhCCEEEEec
Confidence            58999999 9999999999999998  999999986432 33333322  1111     23468999999999985

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.72  E-value=0.021  Score=56.79  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC----CCChhhhhCC--Cc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG----QPQLENALTG--MD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d--AD  111 (390)
                      ++++|.|+||+|++|+.++..|...+.  +|+.+|.+..  ......+. ..  .++....+    ..++.+.+++  .|
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~Dl~~~~~~~~~~~~~~~d   77 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLN-LA--KKIEDHFGDIRDAAKLRKAIAEFKPE   77 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHh-hc--CCceEEEccCCCHHHHHHHHhhcCCC
Confidence            357999999999999999999998875  8888887662  11111121 11  12221111    1233455554  59


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       112 iVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +||-+++.+...  ...-...+..|+.....+.+.+.+.+....++++|.
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS  127 (349)
T TIGR02622        78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS  127 (349)
T ss_pred             EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            999998854321  123345677888888888888876653345666553

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.72  E-value=0.045  Score=53.56  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcc-cCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFLG----QPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~-~~~~~v~~~~~----t~dl~~al~dADiVI  114 (390)
                      .++|.|+||+|.+|+.++..|...+.  ++++...+. .......+... ....+++.+.+    ..++.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            46999999999999999999988876  676554443 11122222211 11123443322    234567788999999


Q ss_pred             EcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 016424          115 IPAGVPRK-PGMTRDDLFNINAGIVRTLCEGIAKC  148 (390)
Q Consensus       115 i~ag~p~k-~g~~r~~l~~~N~~ii~~ia~~I~~~  148 (390)
                      -+|+.... ......+++..|+.....+.+.+.+.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            99875321 11122345667888788888777664

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.71  E-value=0.0057  Score=51.88  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=49.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH-HHHHh-cccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADIS-HMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~-a~DL~-~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ||+|+||+|.+|+.+..+|...+.+.-+.+++.....|. ..+.. +......+....  .+ .+.+.++|+||.+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence            799999999999999999999888888888888762221 12221 111123444432  24 46789999999985

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.69  E-value=0.013  Score=56.79  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .|||+|||+ |.+|.+++..|...+  ...+|..+|.+.. ....++....   .++..   ++..+++++||+||++..
T Consensus         3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~~---~~~~e~~~~aDvVilav~   74 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKGT---HNKKELLTDANILFLAMK   74 (279)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceEe---CCHHHHHhcCCEEEEEeC
Confidence            369999999 999999999888876  2358899997541 1223333211   13332   355677899999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  162 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd  162 (390)
                          |..            +.++...+..+ .++.++|.+.+-+.
T Consensus        75 ----p~~------------~~~vl~~l~~~~~~~~liIs~~aGi~  103 (279)
T PRK07679         75 ----PKD------------VAEALIPFKEYIHNNQLIISLLAGVS  103 (279)
T ss_pred             ----HHH------------HHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                211            22333444443 35667766655553

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.69  E-value=0.012  Score=57.20  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +||++||+ |.+|++++..|...+.  ..+|+.+|.+...  ...+.+.. .  ++..   ++..+.+++||+||++.. 
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLavk-   72 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY-G--ITIT---TNNNEVANSADILILSIK-   72 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEeC-
Confidence            58999999 9999999999988774  4579999987521  22232211 1  2332   344677899999999873 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  162 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd  162 (390)
                      |   .            .+.++.+.+..+ .++.++|-+.--++
T Consensus        73 P---~------------~~~~vl~~l~~~~~~~~lvISi~AGi~  101 (272)
T PRK12491         73 P---D------------LYSSVINQIKDQIKNDVIVVTIAAGKS  101 (272)
T ss_pred             h---H------------HHHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence            2   1            233444445443 35566665554443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.68  E-value=0.0099  Score=57.92  Aligned_cols=64  Identities=19%  Similarity=0.272  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||+|||. |.+|+.++..+...+.  ++..||.+...  ...+...    .+..   ++++.+++++||+||++.
T Consensus         3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~----g~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEA--VAEVIAA----GAET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHC----CCee---cCCHHHHHhcCCEEEEeC
Confidence            68999999 9999999999988776  88999987622  1112211    1122   245678889999999986

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.65  E-value=0.0041  Score=53.67  Aligned_cols=75  Identities=21%  Similarity=0.315  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||+|+|+ |++|+.++..|+..+. .+|.|+|-+.                     +......|.......+++.+..
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            469999999 9999999999998874 7899999874                     0111222333333456665532


Q ss_pred             C---CChhhhhCCCcEEEEcC
Q 016424          100 Q---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 t---~dl~~al~dADiVIi~a  117 (390)
                      .   .+..+.++++|+||.+.
T Consensus        80 ~~~~~~~~~~~~~~d~vi~~~  100 (135)
T PF00899_consen   80 KIDEENIEELLKDYDIVIDCV  100 (135)
T ss_dssp             HCSHHHHHHHHHTSSEEEEES
T ss_pred             ccccccccccccCCCEEEEec
Confidence            1   23446677999999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.64  E-value=0.021  Score=51.79  Aligned_cols=73  Identities=23%  Similarity=0.352  Sum_probs=48.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH---------------HHHHHHhcccCCCeEEEEeC---
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP---------------GVTADISHMDTGAVVRGFLG---   99 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~---------------g~a~DL~~~~~~~~v~~~~~---   99 (390)
                      ||.|||+ |++|+.++..|+..+. .+++|+|.+.     +.               ..+..|+......+++.+..   
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            6899999 9999999999998874 6899999985     10               01112222222234443321   


Q ss_pred             CCChhhhhCCCcEEEEcC
Q 016424          100 QPQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 t~dl~~al~dADiVIi~a  117 (390)
                      .++..+-++++|+||.+.
T Consensus        79 ~~~~~~~l~~~DlVi~~~   96 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAF   96 (174)
T ss_pred             hhhHHHHhcCCCEEEECC
Confidence            123445689999999985

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.019  Score=54.10  Aligned_cols=113  Identities=23%  Similarity=0.271  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC----CCChhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG----QPQLENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~------  108 (390)
                      |+++.|+||+|++|..++..|...+.  +++++|.+..  .....++..    ..+..+.+    ..++.++++      
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~   74 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAAT   74 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999988875  8999998752  222222221    12222111    112223333      


Q ss_pred             --CCcEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g---~~---r~~l~~~N~~ii~~ia~~I~~---~~p~a~iiv~tN  159 (390)
                        ..|+||..+|......   .+   -...+..|..-...+.+.+.+   ..+.+.+++++-
T Consensus        75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  136 (260)
T PRK08267         75 GGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSS  136 (260)
T ss_pred             CCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence              4599999998754322   12   123456676655555555433   234566666654

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.63  E-value=0.041  Score=54.72  Aligned_cols=115  Identities=17%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ----PQLENALTGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADi  112 (390)
                      ...|||.|+||+|.||+.++..|...+.  ++++.+.+...  ....++..   ..+++.+.+.    .++.+++++.|+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~   82 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDG   82 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCE
Confidence            3467999999999999999999988876  78887765421  11222221   1234433321    234566788999


Q ss_pred             EEEcCCCCCCC---C-CCHH-----HHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKP---G-MTRD-----DLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~---g-~~r~-----~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-+++.+...   . .+..     ..+..|+.-...+.+.+.++..-..++++|
T Consensus        83 Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~S  137 (353)
T PLN02896         83 VFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTS  137 (353)
T ss_pred             EEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEe
Confidence            99998864311   1 1111     223334466667777766653223455544

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.63  E-value=0.015  Score=50.52  Aligned_cols=120  Identities=18%  Similarity=0.246  Sum_probs=72.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHH-H--hcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-I--SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~D-L--~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |+|+|+ |.+|..++..|.+.+.  ++.|++... ......+ +  .+......+.......+..+....+|+||++...
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            789999 9999999999988776  899999865 1111111 1  1111001111111112222568899999999632


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee-cccc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTML  189 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG-~t~L  189 (390)
                      ..                ..+..+.+..+. |+..|+.+-|=++..-.     +.+.  +++.+|++ +|+.
T Consensus        78 ~~----------------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~-----l~~~--~~~~~v~~g~~~~  126 (151)
T PF02558_consen   78 YQ----------------LEQALQSLKPYLDPNTTIVSLQNGMGNEEV-----LAEY--FPRPRVLGGVTTI  126 (151)
T ss_dssp             GG----------------HHHHHHHHCTGEETTEEEEEESSSSSHHHH-----HHCH--STGSGEEEEEEEE
T ss_pred             cc----------------hHHHHHHHhhccCCCcEEEEEeCCCCcHHH-----HHHH--cCCCcEEEEEEeE
Confidence            21                345666677776 67788888898877633     2333  55667774 4553

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.61  E-value=0.0083  Score=58.41  Aligned_cols=63  Identities=16%  Similarity=0.256  Sum_probs=46.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ||+|||. |.+|++++..|...+.  +|.+||.+...  ...+.+..  .  ..   .++..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g--~--~~---~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAG--A--VT---AETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCC--C--cc---cCCHHHHHhcCCEEEEec
Confidence            6999999 9999999999998886  89999987621  22232221  1  11   235678899999999986

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.61  E-value=0.012  Score=59.27  Aligned_cols=67  Identities=21%  Similarity=0.304  Sum_probs=46.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||+|||+ |.+|.+++..|...+.  ++.+||.+... ....... ..   .+..  .++++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~-~~---~~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALG-FG---VIDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhc-CC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence            37999999 9999999999998886  77788887622 1111111 11   1111  1346778899999999986

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.61  E-value=0.011  Score=57.19  Aligned_cols=66  Identities=23%  Similarity=0.343  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||. |.+|..++..|...+...+|+.||.+...  ...+.....   +..   .+++.+ +.+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence            58999999 99999999999988765579999997621  111221111   111   124444 45699999986

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=96.60  E-value=0.014  Score=55.65  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=66.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP  123 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~  123 (390)
                      |.|+||+|.+|+.++..|...+.  +|+.++.+.....  .+...    .+....+ .+..++++++|+||..++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGA--NTKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCC--cccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999988875  8999998762100  00000    0111111 23357889999999999876543


Q ss_pred             CC----CHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016424          124 GM----TRDDLFNINAGIVRTLCEGIAKCCPN  151 (390)
Q Consensus       124 g~----~r~~l~~~N~~ii~~ia~~I~~~~p~  151 (390)
                      +.    ....+...|+.....+.+.+.++...
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            31    22355677899999999999887643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.59  E-value=0.011  Score=57.88  Aligned_cols=65  Identities=20%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |+||+|||. |.+|.+++..|...+.  +|..||++...  +.++....    ++.   .++..+++++||+||++.
T Consensus         1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence            359999999 9999999999998886  89999997621  22232211    111   235678899999999985

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.57  E-value=0.0098  Score=60.02  Aligned_cols=112  Identities=16%  Similarity=0.032  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLV  113 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiV  113 (390)
                      ..+.|||.|+||+|.||+.++..|...+.  +|..+|.... ....+   ...  ....+.+    ..++.++++++|+|
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~-~~~~~---~~~--~~~~~~~Dl~d~~~~~~~~~~~D~V   89 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKN-EHMSE---DMF--CHEFHLVDLRVMENCLKVTKGVDHV   89 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccc-ccccc---ccc--cceEEECCCCCHHHHHHHHhCCCEE
Confidence            45668999999999999999999988876  8999987531 10000   000  0111111    11234567899999


Q ss_pred             EEcCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~g---~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |-+++.....+   .........|+.....+.+.+.+...+. ++.+|
T Consensus        90 ih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~S  136 (370)
T PLN02695         90 FNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYAS  136 (370)
T ss_pred             EEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence            99986431111   1223345678888889999888776554 44443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.57  E-value=0.0091  Score=52.08  Aligned_cols=75  Identities=23%  Similarity=0.288  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+.++|.|+|+ |++|..++..+...+ ..++.++|.+.  ....+.++....  ....    ..+..+.++++|+||++
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINT   88 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeC
Confidence            34579999999 999999999998876 56899999976  233333333210  1111    12455668999999998


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      ...+.
T Consensus        89 ~~~~~   93 (155)
T cd01065          89 TPVGM   93 (155)
T ss_pred             cCCCC
Confidence            75543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02778 3,5-epimerase/4-reductase

Probab=96.57  E-value=0.045  Score=53.56  Aligned_cols=91  Identities=25%  Similarity=0.245  Sum_probs=61.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC--chHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~--~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +...|||.|+||+|.+|+.++..|...+.  ++++...+  +...+..|+.                  +  .+.|+||-
T Consensus         6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~~l~------------------~--~~~D~ViH   63 (298)
T PLN02778          6 GSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEADID------------------A--VKPTHVFN   63 (298)
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHHHHH------------------h--cCCCEEEE
Confidence            45568999999999999999999988775  66543221  1111111111                  1  26899999


Q ss_pred             cCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 016424          116 PAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCP  150 (390)
Q Consensus       116 ~ag~p~k~g-----~~r~~l~~~N~~ii~~ia~~I~~~~p  150 (390)
                      +|+....+.     ....+.+..|+.....+++.+.+.+.
T Consensus        64 ~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv  103 (298)
T PLN02778         64 AAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL  103 (298)
T ss_pred             CCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            887543222     23456778899988899999888754

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.56  E-value=0.034  Score=54.32  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=80.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhC----CC-----CcEEEEEeCCc--hH------HHHHHHhcccCCCeEEEEeCCCCh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVN--TP------GVTADISHMDTGAVVRGFLGQPQL  103 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~----~~-----~~eL~L~Di~~--~~------g~a~DL~~~~~~~~v~~~~~t~dl  103 (390)
                      ..||+|.|| |..|..++.+|...    ++     -..++++|.+.  ..      ..-..+.+..  .. .   ...++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~--~~-~---~~~~L   97 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD--EE-K---EGKSL   97 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc--Cc-c---cCCCH
Confidence            469999999 99999999766543    43     26899999986  11      1112222211  11 1   13579


Q ss_pred             hhhhC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCC
Q 016424          104 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD  179 (390)
Q Consensus       104 ~~al~--dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s~~p  179 (390)
                      .++++  ++|++|=+.+.|   |-           +=+++.+.|.++|++.+|+-.+||..  -+++  .++ ++.+  +
T Consensus        98 ~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p--e~a-~~~t--~  158 (279)
T cd05312          98 LEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTA--EDA-YKWT--D  158 (279)
T ss_pred             HHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCH--HHH-HHhh--c
Confidence            99999  999999876544   21           22478888999999999999999986  4444  222 3322  1


Q ss_pred             CCceeecc
Q 016424          180 PKKLLGVT  187 (390)
Q Consensus       180 ~~kviG~t  187 (390)
                      -+.+|++.
T Consensus       159 G~ai~ATG  166 (279)
T cd05312         159 GRALFASG  166 (279)
T ss_pred             CCEEEEeC
Confidence            24588873

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.55  E-value=0.0087  Score=56.08  Aligned_cols=74  Identities=20%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--------------------hHHHHHHHhcccCCCeEEEEeC--
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------------TPGVTADISHMDTGAVVRGFLG--   99 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--------------------~~g~a~DL~~~~~~~~v~~~~~--   99 (390)
                      .||.|||+ |++|+.++..|+..+. .+|.|+|.|.                    +...+..|.......+++.+..  
T Consensus        29 ~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i  106 (212)
T PRK08644         29 AKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI  106 (212)
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence            48999999 9999999999998874 6899999983                    1111223333332344444321  


Q ss_pred             -CCChhhhhCCCcEEEEcC
Q 016424          100 -QPQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 -t~dl~~al~dADiVIi~a  117 (390)
                       ..+..+-++++|+||.+.
T Consensus       107 ~~~~~~~~~~~~DvVI~a~  125 (212)
T PRK08644        107 DEDNIEELFKDCDIVVEAF  125 (212)
T ss_pred             CHHHHHHHHcCCCEEEECC
Confidence             123345688999999874

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.55  E-value=0.016  Score=60.66  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc--cCCCeEEEEeCCCChhhhhC---CCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTGAVVRGFLGQPQLENALT---GMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~--~~~~~v~~~~~t~dl~~al~---dADiVIi  115 (390)
                      +.+|+|||. |.+|++++..|+.++.  +|.+||++..  .+.++...  .....++.   +++++++++   ++|+|++
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~--~~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYE--KTEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEE
Confidence            358999999 9999999999999987  8999999762  12222221  00122333   346767665   5898888


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  161 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPv  161 (390)
                      ..-    +           ...+.++.+.+..+ .|+.+||..+|=.
T Consensus        73 ~v~----~-----------~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         73 LIK----A-----------GEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             EeC----C-----------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            741    1           22344444555444 4778888887643

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.54  E-value=0.018  Score=56.93  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      -..++|+|||+ |.+|..++..+...+ ..++.++|.+.  +...+..+.     ..+..   .+++.+++.++|+||.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA  245 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence            35689999999 999999998887744 45899999975  223333332     12221   13567889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCccc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNST  164 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-~-~p~a~iiv~tNPvd~~  164 (390)
                      .+.|.-                .++...+.+ . ....+++-+++|-|+=
T Consensus       246 t~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         246 TGAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             CCCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence            876641                122222211 1 2456788899999865

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.053  Score=52.75  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=58.0

Q ss_pred             cCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEE
Q 016424           18 LYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR   95 (390)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~   95 (390)
                      +-|| .|..+++.+........+.++|.|+||+|++|..++..|+..+.  +|++.|.+.  +.....++....  .++.
T Consensus        18 ~~~~-~~~~~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--~~~~   92 (293)
T PRK05866         18 MRPP-ISPQLLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--GDAM   92 (293)
T ss_pred             cCCC-CCchhhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEE
Confidence            3444 34444442222222233447899999999999999999988876  899999976  233333443211  2233


Q ss_pred             EEeCC-CC---hhhhh-------CCCcEEEEcCCCC
Q 016424           96 GFLGQ-PQ---LENAL-------TGMDLVIIPAGVP  120 (390)
Q Consensus        96 ~~~~t-~d---l~~al-------~dADiVIi~ag~p  120 (390)
                      .+.+. +|   ..+++       ...|+||..+|..
T Consensus        93 ~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~  128 (293)
T PRK05866         93 AVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRS  128 (293)
T ss_pred             EEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            22211 12   22223       3789999998864

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.52  E-value=0.079  Score=49.24  Aligned_cols=76  Identities=22%  Similarity=0.316  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------  107 (390)
                      +.++|.|+||+|++|..++..|...+.  ++++++.+.  ......++.+   ..++..+.+. .|   +..++      
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456999999999999999999988876  799999986  2223334443   1233333221 12   22222      


Q ss_pred             -CCCcEEEEcCCCC
Q 016424          108 -TGMDLVIIPAGVP  120 (390)
Q Consensus       108 -~dADiVIi~ag~p  120 (390)
                       ...|+||..+|..
T Consensus        79 ~~~~d~vi~~ag~~   92 (251)
T PRK07231         79 FGSVDILVNNAGTT   92 (251)
T ss_pred             hCCCCEEEECCCCC
Confidence             3569999999864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.49  E-value=0.01  Score=59.51  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=52.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------H--HHHHHHhcccCCCeEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------P--GVTADISHMDTGAVVRGF   97 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~--g~a~DL~~~~~~~~v~~~   97 (390)
                      ..||.|||+ |++|+.++..|+..+ +.+|.|+|.|.     +                +  ..+..|.+......++.+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            359999999 999999999999888 46899999974     0                1  112234444333455544


Q ss_pred             eCC---CChhhhhCCCcEEEEcC
Q 016424           98 LGQ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus        98 ~~t---~dl~~al~dADiVIi~a  117 (390)
                      ...   .++++.++++|+||.+.
T Consensus       102 ~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        102 VTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             eccCCHHHHHHHhcCCCEEEEcC
Confidence            321   34567789999999986

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=96.47  E-value=0.036  Score=54.92  Aligned_cols=107  Identities=18%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCC--CcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d--ADiVI  114 (390)
                      |+||.|+||+|.||+.++..|...+. ..+++.|.....+....+.+......+....+    .+++.+++++  .|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            46999999999999999999988763 34667776432111122221110112222211    1234556664  89999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh
Q 016424          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC  148 (390)
Q Consensus       115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~  148 (390)
                      -++|.....  ..........|+.-...+.+.+.++
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~  115 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY  115 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence            999864321  1223456778888888888888765

>PLN02240 UDP-glucose 4-epimerase

Probab=96.47  E-value=0.058  Score=53.24  Aligned_cols=116  Identities=18%  Similarity=0.151  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeC----CCChhhhhC--C
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLG----QPQLENALT--G  109 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~----t~dl~~al~--d  109 (390)
                      .++||.|+||+|++|+.++..|...+.  +|+++|...  .......+.+..  ....++.+.+    ..++.++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            356999999999999999999988875  889998643  111111222110  0122333221    123333444  6


Q ss_pred             CcEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k-~g-~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|+||.+++.+.. .. ......+..|+.....+++.+.+..... ++.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            8999999886421 11 2345577889888888888887665333 44444

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.44  E-value=0.017  Score=57.71  Aligned_cols=74  Identities=15%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..++|+|||+ |+.|...+..+.....+.++.+||.+.  +...+.++.+.. ...+..   .+|+++++++||+||.+.
T Consensus       131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEee
Confidence            3469999999 999998887777544478999999986  345555554322 233443   357889999999998875


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      .
T Consensus       206 ~  206 (330)
T PRK08291        206 P  206 (330)
T ss_pred             C
Confidence            3

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.44  E-value=0.013  Score=57.85  Aligned_cols=78  Identities=22%  Similarity=0.351  Sum_probs=52.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHH-----------HHhcccCCCeEEEEeCCCChhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTA-----------DISHMDTGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~-----------DL~~~~~~~~v~~~~~t~dl~~al  107 (390)
                      ++||+-||| |.||.+..--++.+-+--++.++|++...  +.--           |......+.++ +|  ++|.+.++
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknl-ff--stdiekai   76 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNL-FF--STDIEKAI   76 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCce-ee--ecchHHHh
Confidence            479999999 99998877666655444589999998621  1111           11111112223 33  46899999


Q ss_pred             CCCcEEEEcCCCCCC
Q 016424          108 TGMDLVIIPAGVPRK  122 (390)
Q Consensus       108 ~dADiVIi~ag~p~k  122 (390)
                      +.||+|+++...|.|
T Consensus        77 ~eadlvfisvntptk   91 (481)
T KOG2666|consen   77 KEADLVFISVNTPTK   91 (481)
T ss_pred             hhcceEEEEecCCcc
Confidence            999999999888765

>PRK08223 hypothetical protein; Validated

Probab=96.44  E-value=0.013  Score=57.34  Aligned_cols=73  Identities=18%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeC-
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLG-   99 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~-   99 (390)
                      .||.|||+ |++|+.++..|+..+. .+|.|+|-|.     +.                ..+..+.++....+|+.+.. 
T Consensus        28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~  105 (287)
T PRK08223         28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG  105 (287)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            49999999 9999999999999884 6899999884     00                01122333333345554431 


Q ss_pred             --CCChhhhhCCCcEEEEc
Q 016424          100 --QPQLENALTGMDLVIIP  116 (390)
Q Consensus       100 --t~dl~~al~dADiVIi~  116 (390)
                        .++..+-++++|+||-+
T Consensus       106 l~~~n~~~ll~~~DlVvD~  124 (287)
T PRK08223        106 IGKENADAFLDGVDVYVDG  124 (287)
T ss_pred             cCccCHHHHHhCCCEEEEC
Confidence              24555678999999854

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.097  Score=48.38  Aligned_cols=115  Identities=18%  Similarity=0.196  Sum_probs=66.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      .++|.|+||+|++|+.++..|+..+.  +++++|.+.  +.....++...   ..+..+.+. +|   +.+++       
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999998888775  799999876  22333444432   223333221 22   22223       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  160 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~tNP  160 (390)
                      .+.|+||..+|.....   ..+..   +.+..|+.-...+.+.+.+.  ...+.+++++..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            3789999998764321   12222   33455655444444444332  234556666643

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=96.37  E-value=0.035  Score=54.94  Aligned_cols=106  Identities=15%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhC--CCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT--GMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~--dADiVIi  115 (390)
                      |||.|+||+|.+|+.++..|...+. ..++.+|.....+....+.+......+..+.+    ..++.++++  ++|+||-
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999887763 24566775431111111221111122222211    123445565  4799999


Q ss_pred             cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 016424          116 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKC  148 (390)
Q Consensus       116 ~ag~p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~  148 (390)
                      +++....  ......+....|+.-...+.+.+.++
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~  114 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY  114 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence            9986432  11223457788888888888888775

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.36  E-value=0.033  Score=55.25  Aligned_cols=93  Identities=19%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .+.++|+|||. |.||+.++..+...+.  ++..||......           ..+..+....++.+.+++||+|++...
T Consensus       134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~-----------~~~~~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW-----------PGVQSFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC-----------CCceeecccccHHHHHhcCCEEEECCC
Confidence            34579999999 9999999999987776  899999754110           001111112468899999999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..           ..|..++-  .+.+....|++++||++
T Consensus       200 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        200 NT-----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             CC-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence            11           22333332  34555567899999986

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.35  E-value=0.013  Score=55.42  Aligned_cols=76  Identities=22%  Similarity=0.354  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HHHHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGVTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||.|+|+ |++|+.++..|+..+ +.+|.|+|-+.     +                ...+..|.......+++.+..
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            349999999 999999999999888 47899998874     0                111122223222234444321


Q ss_pred             ---CCChhhhhCCCcEEEEcCC
Q 016424          100 ---QPQLENALTGMDLVIIPAG  118 (390)
Q Consensus       100 ---t~dl~~al~dADiVIi~ag  118 (390)
                         ..++.+-++++|+||.+..
T Consensus        99 ~i~~~~~~~~~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEELIAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHHHHhCCCEEEEcCC
Confidence               1233456788999998863

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.34  E-value=0.032  Score=52.83  Aligned_cols=101  Identities=23%  Similarity=0.326  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCch--HH-------HHHHHhcccCCCeEEEEeCCCChhhhhC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT--PG-------VTADISHMDTGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~--~g-------~a~DL~~~~~~~~v~~~~~t~dl~~al~  108 (390)
                      -+..||.|+|| |+.|..++..|...+. -++|.++|.+..  ..       ...++.+.......     ..++.++++
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-----~~~l~~~l~   96 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-----GGTLKEALK   96 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcc-----cCCHHHHHh
Confidence            34569999999 9999999999987764 128999999841  11       11223221100111     135778999


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                      ++|+||-+.+    +|+-.           .++.+.   .+++.+++.++||...
T Consensus        97 ~~dvlIgaT~----~G~~~-----------~~~l~~---m~~~~ivf~lsnP~~e  133 (226)
T cd05311          97 GADVFIGVSR----PGVVK-----------KEMIKK---MAKDPIVFALANPVPE  133 (226)
T ss_pred             cCCEEEeCCC----CCCCC-----------HHHHHh---hCCCCEEEEeCCCCCc
Confidence            9999999875    45411           122233   3477888888899853

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.33  E-value=0.05  Score=53.85  Aligned_cols=116  Identities=15%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC--CCC-------hhhhhC-
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG--QPQ-------LENALT-  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~--t~d-------l~~al~-  108 (390)
                      ...+.|+||+|++|..++..|+..+.  +|+++|+++  +...+.++.......++..+..  ++|       +.+.+. 
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            45889999999999999999998886  899999987  3445555543211122322210  112       122333 


Q ss_pred             -CCcEEEEcCCCCCC---C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRK---P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k---~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                       |.|++|..+|....   +  ..+..   ..+..|..-...+.+.+...   ...+.|++++
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iS  192 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIG  192 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence             45589999886431   1  12222   34556655444444443322   2345566654

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.31  E-value=0.026  Score=55.45  Aligned_cols=64  Identities=17%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d---ADiVIi~a  117 (390)
                      |||+|||. |.+|++++..|...+.  +|.+||.++..  +.++.+.  .  ++.   ..++.+.++.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~--g--~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEE--G--ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHC--C--Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999999 9999999999998876  89999998621  2223221  1  222   1244455554   69999875

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.31  E-value=0.016  Score=55.82  Aligned_cols=106  Identities=20%  Similarity=0.253  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhC----CCC-----cEEEEEeCCc--hHH------HHHHHhcccCCCeEEEEeCCCCh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPG------VTADISHMDTGAVVRGFLGQPQL  103 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~----~~~-----~eL~L~Di~~--~~g------~a~DL~~~~~~~~v~~~~~t~dl  103 (390)
                      ..||+++|| |..|..++.+|...    ++-     +.++|+|.+.  ..+      ....+.+-..  ....   ..++
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~--~~~~---~~~L   98 (255)
T PF03949_consen   25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN--PEKD---WGSL   98 (255)
T ss_dssp             G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS--TTT-----SSH
T ss_pred             HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc--cccc---ccCH
Confidence            469999999 99999998766543    653     7899999986  122      2223333221  1111   1478


Q ss_pred             hhhhCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHH
Q 016424          104 ENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP  166 (390)
Q Consensus       104 ~~al~dA--DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~  166 (390)
                      .++++++  |++|=+.|.|-.              +-+++.+.|.++|++.+|+=.|||..  -+++
T Consensus        99 ~eav~~~kPtvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p  151 (255)
T PF03949_consen   99 LEAVKGAKPTVLIGLSGQGGA--------------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTP  151 (255)
T ss_dssp             HHHHHCH--SEEEECSSSTTS--------------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred             HHHHHhcCCCEEEEecCCCCc--------------CCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence            9999999  999988775432              23588899999999999999999998  6664

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.1  Score=48.54  Aligned_cols=116  Identities=15%  Similarity=0.209  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      +.++|.|+||+|++|+.++..+...+.  ++++++.++  ......++....  .++..+.+ -+|.   .+.+      
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999988876  888888875  233344443321  23443322 1221   1112      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                       .+.|+||..+|.....   ..+..   ..+..|..-...+.+.+..+   ...+.+++++-
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence             4789999998864321   12222   23445655555555554432   23456666653

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.29  E-value=0.014  Score=53.44  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC--CCChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG--QPQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~--t~dl~~al~dADiVIi  115 (390)
                      +.+++.|+||+|++|..++..+...+.  ++.+++.+.  +.....++.+.. ...+.....  ..++.++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            457999999889999999998887764  899999875  233333343211 123332211  1234578999999888


Q ss_pred             cCCCC
Q 016424          116 PAGVP  120 (390)
Q Consensus       116 ~ag~p  120 (390)
                      +...+
T Consensus       104 at~~g  108 (194)
T cd01078         104 AGAAG  108 (194)
T ss_pred             CCCCC
Confidence            76433

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02712 arogenate dehydrogenase

Probab=96.29  E-value=0.028  Score=61.44  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=47.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh-CCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-~dADiVIi~  116 (390)
                      ..+++||+|||. |.+|..++..+...+.  +|..||.+.....+.++       .+..+   +++.+.+ ++||+||++
T Consensus        49 ~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~~---~d~~e~~~~~aDvViLa  115 (667)
T PLN02712         49 NTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSFF---LDPHDLCERHPDVILLC  115 (667)
T ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEEe---CCHHHHhhcCCCEEEEc
Confidence            455689999998 9999999999988875  89999987522222221       12222   3455544 579999998


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      .
T Consensus       116 v  116 (667)
T PLN02712        116 T  116 (667)
T ss_pred             C
Confidence            5

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.28  E-value=0.086  Score=49.56  Aligned_cols=117  Identities=14%  Similarity=0.183  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~  108 (390)
                      ++|.|+||+|++|..++..|+..+.  +|+++|.+.  ......++.+.....++..+.. -+|   ...++       .
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998876  899999876  2333334433211123333221 122   12222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCCHHH---HHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 016424          109 GMDLVIIPAGVPRKP---GMTRDD---LFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r~~---l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      ..|+||..+|.+...   ..+..+   .+..|+.    +++.+.+.+.+..+++.+++++..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~  142 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK  142 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            569999999865432   123322   2344543    345555555554545677776653

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.14  Score=47.73  Aligned_cols=78  Identities=24%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhhC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al~  108 (390)
                      +++.|+||+|++|..++..|...+.  ++++.|.+.  ......++........+..+.+ -+|.          .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999988875  899999876  2333344433211223443322 1222          12234


Q ss_pred             CCcEEEEcCCCCC
Q 016424          109 GMDLVIIPAGVPR  121 (390)
Q Consensus       109 dADiVIi~ag~p~  121 (390)
                      ..|+||..+|...
T Consensus        81 ~id~vi~~ag~~~   93 (248)
T PRK08251         81 GLDRVIVNAGIGK   93 (248)
T ss_pred             CCCEEEECCCcCC
Confidence            6899999998754

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.27  E-value=0.076  Score=57.79  Aligned_cols=120  Identities=15%  Similarity=0.045  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh--CCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL--TGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al--~dADi  112 (390)
                      -+++||.|+||+|.||+.++..|...+...+|+.+|..........+........++.+.+. +|   +...+  .++|+
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~   83 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDT   83 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence            45789999999999999999988876434488888874311111112111111244443321 22   11222  68999


Q ss_pred             EEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-+|+......  ....++...|+.-...+.+.+.+.+.-..+|.+|
T Consensus        84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S  131 (668)
T PLN02260         84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS  131 (668)
T ss_pred             EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence            999988653221  1234566788888888888887765333455544

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.27  E-value=0.066  Score=50.19  Aligned_cols=114  Identities=17%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      ++++.|.||+|++|+.++..|+..+.  ++++.+.++  ......++.+..  .++..+.+. +|.   .+++       
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999998887  899999987  233444454432  234333221 221   1222       


Q ss_pred             CCCcEEEEcCCCCCC-C--C---CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK-P--G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g---~~r~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...|+||-.+|.... +  .   ..-...+..|..-    .+.+.+.+.+.++.+.++++|
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            347999999886421 1  1   1122344556655    555555553334455666655

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.25  E-value=0.019  Score=58.28  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=50.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HHHHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGVTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||.|||+ |++|+.++..|+..+ +.+|+|+|-|.     +                ...+..|.+.....+++.+..
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            459999999 999999999999887 46899999984     0                111222333332334444321


Q ss_pred             ---CCChhhhhCCCcEEEEcC
Q 016424          100 ---QPQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 ---t~dl~~al~dADiVIi~a  117 (390)
                         .++..+.++++|+||-+.
T Consensus       119 ~i~~~~~~~~~~~~DlVid~~  139 (370)
T PRK05600        119 RLTAENAVELLNGVDLVLDGS  139 (370)
T ss_pred             ecCHHHHHHHHhCCCEEEECC
Confidence               124456789999998875

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.25  E-value=0.055  Score=53.34  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHH--Hh--cccCCCeEEEEeCCCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTAD--IS--HMDTGAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~D--L~--~~~~~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      .|||+|+|+ |+||+.++..|...+.  ++.|++...  ....-.+  +.  +......+.... .+  .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~-~~--~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA-ET--ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC-CC--cccccccCEEE
Confidence            479999999 9999999999988775  899999864  1111111  10  000001111111 11  13356889999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccc
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML  189 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~L  189 (390)
                      ++...            ..    ..+..+.+..+ .+++.++.+-|=++....+     ++.  ++..++++- +..
T Consensus        76 v~vK~------------~~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-----~~~--~~~~~v~~g~~~~  129 (305)
T PRK05708         76 LACKA------------YD----AEPAVASLAHRLAPGAELLLLQNGLGSQDAV-----AAR--VPHARCIFASSTE  129 (305)
T ss_pred             EECCH------------Hh----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-----HHh--CCCCcEEEEEeee
Confidence            99621            11    22334445444 4888888899998876432     332  566677754 443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.23  E-value=0.023  Score=56.58  Aligned_cols=73  Identities=10%  Similarity=0.150  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ..+|+|||+ |.+|...+..+.....+.++.++|.+.  ....+.++.+.. ...+..+   +|+++++.+||+||.+..
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEccC
Confidence            468999999 999988776665444578999999987  344555554321 2344443   467889999999998754

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.23  E-value=0.027  Score=48.93  Aligned_cols=73  Identities=23%  Similarity=0.416  Sum_probs=47.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC-
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ-  100 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t-  100 (390)
                      ||.|||+ |++|+.++..|+..+. .++.|+|-+.                     +...+..+.......+++.+... 
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~   78 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI   78 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence            6899999 9999999999999885 6899999873                     01111222222223444444311 


Q ss_pred             --CChhhhhCCCcEEEEcC
Q 016424          101 --PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 --~dl~~al~dADiVIi~a  117 (390)
                        .+..+.+++.|+||.+.
T Consensus        79 ~~~~~~~~~~~~diVi~~~   97 (143)
T cd01483          79 SEDNLDDFLDGVDLVIDAI   97 (143)
T ss_pred             ChhhHHHHhcCCCEEEECC
Confidence              11135588999999986

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.22  E-value=0.074  Score=53.00  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=78.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE--eCCchHH--HHHHHhcccCCCeEEEEeC----CCChhhhhCCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY--DVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENALTGMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~--Di~~~~g--~a~DL~~~~~~~~v~~~~~----t~dl~~al~dAD  111 (390)
                      .+++|+|.||+|.||+.++..|.+.|.  +++--  |..+.+.  +..+|....  .+++.+.+    .+.+.+|+++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            467999999999999999999999997  44332  3222222  455565433  22443322    356789999999


Q ss_pred             EEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          112 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       112 iVIi~ag~p~k~g~-~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      .|+=+|...--... .-.+++.-.++-.+.+.+++.++. ...=+++|.-..
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a  131 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA  131 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence            99999864322222 244677777888888888888877 444455665443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.21  E-value=0.018  Score=57.81  Aligned_cols=74  Identities=23%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HH--HHHHHhcccCCCeEEEEe
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PG--VTADISHMDTGAVVRGFL   98 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g--~a~DL~~~~~~~~v~~~~   98 (390)
                      .||.|||+ |++|+.++..|+..+ +.+|.|+|-|.     +                +.  .+..+.+......++.+.
T Consensus        25 ~~VlVvG~-GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         25 KHVLIIGA-GALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            49999999 999999999999887 46899999874     0                00  112233333233444432


Q ss_pred             C---CCChhhhhCCCcEEEEcC
Q 016424           99 G---QPQLENALTGMDLVIIPA  117 (390)
Q Consensus        99 ~---t~dl~~al~dADiVIi~a  117 (390)
                      .   .++..+.++++|+||.+.
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~~  124 (339)
T PRK07688        103 QDVTAEELEELVTGVDLIIDAT  124 (339)
T ss_pred             ccCCHHHHHHHHcCCCEEEEcC
Confidence            1   123446689999999985

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.21  E-value=0.024  Score=54.25  Aligned_cols=95  Identities=23%  Similarity=0.305  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCC--cEEEEcCCCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP  120 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dA--DiVIi~ag~p  120 (390)
                      ||.|+||+|.+|+.++..|...+.  ++++++...     .|+.+            ..++.++++++  |+||.+++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999998888775  888887641     11211            12345667766  9999998864


Q ss_pred             CCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          121 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       121 ~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ....  .........|+.....+++.+.+...  .++++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  23445677888888888888876643  455444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.19  E-value=0.031  Score=54.26  Aligned_cols=97  Identities=15%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ++||++||+ |++|+.++..|...+  ...+|...|.++.+..  ++.... +..+     ++|..++...+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g~~~-----~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-GVVT-----TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence            579999999 999999999888877  3468999998762221  333221 1121     245568899999999997 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                         ||-            .+.++.+.+....++-+||-+.-.+.
T Consensus        71 ---KPq------------~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KPQ------------DLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---ChH------------hHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               442            36677777776456666666654443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.17  E-value=0.024  Score=54.21  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||+ |.+|+.++..|...+. ...+.++|.+...  +.++.+..  ..++..   ++..+++++||+||++..
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav~   70 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAVR   70 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEeC
Confidence            58999999 9999999998887763 4567888876522  22232211  123332   355677899999999873

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.095  Score=56.47  Aligned_cols=109  Identities=14%  Similarity=0.083  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC--------hhhhhCCCcE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ--------LENALTGMDL  112 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d--------l~~al~dADi  112 (390)
                      |||.|+||+|.+|+.++..|.......+|+.++.+.......++.......+++.+.+. +|        ..+.++++|+
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~   80 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH   80 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence            68999999999999999988853334489999986522222222111001233333221 11        1123489999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  151 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~  151 (390)
                      ||-+++... ......+....|+.-...+.+.+.+..-.
T Consensus        81 Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~  118 (657)
T PRK07201         81 VVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAA  118 (657)
T ss_pred             EEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence            999987532 22334556677888888888887776433

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.16  E-value=0.052  Score=53.29  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d---ADiVIi~a  117 (390)
                      |||+|||. |.+|++++..|...+.  +|+.||.+...  +..+.+..    .+.   ..++.+.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence            58999999 9999999999988876  89999987522  22232211    222   2355566655   68999875

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.16  E-value=0.026  Score=56.45  Aligned_cols=97  Identities=21%  Similarity=0.256  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..++|+|||. |.||+.++..+...+.  ++..||.........  ..     .+. +   .++.+.++.||+|++....
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-----~~~-~---~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-----GAE-Y---RPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-----CCE-e---cCHHHHHhhCCEEEEeCCC
Confidence            4579999999 9999999999987776  899999865221111  11     112 1   2578899999999998622


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  163 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~  163 (390)
                      .  +         .+..++-+  +.+....|++++||++  ..+|.
T Consensus       215 t--~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~  247 (333)
T PRK13243        215 T--K---------ETYHMINE--ERLKLMKPTAILVNTARGKVVDT  247 (333)
T ss_pred             C--h---------HHhhccCH--HHHhcCCCCeEEEECcCchhcCH
Confidence            1  1         11222211  3444456899999996  44443

>PLN02256 arogenate dehydrogenase

Probab=96.15  E-value=0.032  Score=55.14  Aligned_cols=65  Identities=22%  Similarity=0.287  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh-CCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-~dADiVIi~a  117 (390)
                      +++||+|||+ |.+|..++..+...+.  +++.||.+.....+.++     .  +..+   ++..+.+ .++|+||++.
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-----g--v~~~---~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-----G--VSFF---RDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-----C--Ceee---CCHHHHhhCCCCEEEEec
Confidence            5679999998 9999999999987774  89999988632222221     1  1222   3555655 4799999986

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.14  E-value=0.041  Score=52.98  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=79.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhC----CC-----CcEEEEEeCCc--hHHH------HHHHhcccCCCeEEEEeCCCCh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVN--TPGV------TADISHMDTGAVVRGFLGQPQL  103 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~----~~-----~~eL~L~Di~~--~~g~------a~DL~~~~~~~~v~~~~~t~dl  103 (390)
                      ..||++.|| |..|..++.+|...    ++     -+.++++|...  ..+.      -..+.+.. .. -.   ...+|
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~-~~-~~---~~~~L   98 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA-NP-ER---ESGDL   98 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc-Cc-cc---ccCCH
Confidence            469999999 99999999777543    21     24899999986  1111      11111111 11 11   12589


Q ss_pred             hhhhC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCC
Q 016424          104 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD  179 (390)
Q Consensus       104 ~~al~--dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s~~p  179 (390)
                      .++++  ++|++|=+.+.|--              +=+++.+.|.++|++.+|+-.+||..  -+++   |-.++.+  +
T Consensus        99 ~eav~~~kptvlIG~S~~~g~--------------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~  159 (254)
T cd00762          99 EDAVEAAKPDFLIGVSRVGGA--------------FTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--E  159 (254)
T ss_pred             HHHHHhhCCCEEEEeCCCCCC--------------CCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--C
Confidence            99999  99999987765521              23478888999999999999999997  5544   2223332  1


Q ss_pred             CCceeecc
Q 016424          180 PKKLLGVT  187 (390)
Q Consensus       180 ~~kviG~t  187 (390)
                      -+.+|++.
T Consensus       160 G~ai~AtG  167 (254)
T cd00762         160 GRAIFASG  167 (254)
T ss_pred             CCEEEEEC
Confidence            36788874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.14  E-value=0.022  Score=54.61  Aligned_cols=74  Identities=20%  Similarity=0.344  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|||+ |++|+.++..|+..+ +.+|.|+|-|.     +.                ..+..|.......+++.+...
T Consensus        33 ~~VliiG~-GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~  110 (245)
T PRK05690         33 ARVLVVGL-GGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR  110 (245)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence            49999999 999999999999887 46899999875     10                112233333323444443321


Q ss_pred             ---CChhhhhCCCcEEEEcC
Q 016424          101 ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ---~dl~~al~dADiVIi~a  117 (390)
                         .+..+-++++|+||.+.
T Consensus       111 i~~~~~~~~~~~~DiVi~~~  130 (245)
T PRK05690        111 LDDDELAALIAGHDLVLDCT  130 (245)
T ss_pred             CCHHHHHHHHhcCCEEEecC
Confidence               12334578899988875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.13  E-value=0.021  Score=54.60  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..||.|+|+ |++|+.++..|+..+ +.+|.|+|-|.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~G-vg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAG-VGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcC-CCEEEEEeCCc
Confidence            359999999 999999999999887 56899999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.12  E-value=0.028  Score=55.47  Aligned_cols=73  Identities=16%  Similarity=0.072  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....++|||+ |..|...+..+..-..+.++.+||++.  +...+.++.+.. ..++...   ++.++++++||+|+.+.
T Consensus       116 da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT  190 (301)
T PRK06407        116 NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT  190 (301)
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence            3469999999 988887777776656689999999987  455666676532 3456653   46789999999999864

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=96.11  E-value=0.024  Score=53.70  Aligned_cols=61  Identities=11%  Similarity=0.080  Sum_probs=42.1

Q ss_pred             HHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHH
Q 016424          274 KFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHL  338 (390)
Q Consensus       274 ~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~  338 (390)
                      .++++|.+|.+   .++.++ .++|.+   |+|.++++||+|+++|+.++.. ++|++...++++....
T Consensus       141 ~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~~  205 (232)
T PF11975_consen  141 AAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVKA  205 (232)
T ss_dssp             HHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHHH
Confidence            45555676643   355554 578876   7899999999999999999665 7999999998875554

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.10  E-value=0.14  Score=47.69  Aligned_cols=115  Identities=17%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCCh---h-------hhhC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---E-------NALT  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl---~-------~al~  108 (390)
                      +.++|.|+||+|++|..++..|...+.  ++++.+.+........+....  .++..+.. -++.   .       +...
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999998886  899999865333333333221  22332221 1221   1       1224


Q ss_pred             CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~----~~~p~a~iiv~t  158 (390)
                      ..|++|..+|......   .+.   .+.+..|..-...+.+.+.    +....+.+++++
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  139 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIA  139 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            6899999988642111   111   2335566554444444443    333346666655

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=96.10  E-value=0.068  Score=52.77  Aligned_cols=110  Identities=16%  Similarity=0.007  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhc-c-cCCCeEEEEeC----CCChhhhhCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M-DTGAVVRGFLG----QPQLENALTG  109 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~-~-~~~~~v~~~~~----t~dl~~al~d  109 (390)
                      .++++|.|.||+|++|+.++..|...+.  +++++|.+..   ......+.. . .....+....+    ..++.+++++
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   81 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD   81 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence            4567999999999999999999998876  8888887541   111222211 0 00122332221    1233455654


Q ss_pred             --CcEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 016424          110 --MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP  150 (390)
Q Consensus       110 --ADiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p  150 (390)
                        .|+||-+|+......  ......+..|+.-...+.+.+.++..
T Consensus        82 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         82 IKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             cCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence              599999998643221  12234456777777888888877763

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.10  E-value=0.024  Score=56.47  Aligned_cols=71  Identities=15%  Similarity=0.145  Sum_probs=52.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..+|+|||+ |..|...+..+.....+.++.+||.+.  +...+.++.+.  ...+...   ++.++++++||+|+++.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~~---~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRAA---TDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEEe---CCHHHHhccCCEEEEec
Confidence            469999999 999998777666555679999999987  34455555532  2344443   46789999999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.09  E-value=0.12  Score=48.04  Aligned_cols=114  Identities=17%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      +++|.|+||+|++|+.++..|...+.  +++++|.+.  ......++....  .++..+.+. +|   .++++       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999988876  899999876  233334444322  223332221 12   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      ...|+||..+|......   .+..   ..+..|..-...+.+.+..+   .+.+.+++++
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~is  138 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIA  138 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence            35799999987532211   2222   23556666555555554322   2334455555

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.09  E-value=0.021  Score=56.59  Aligned_cols=70  Identities=17%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...++|||+ |..+...+..+.. .+ +.+|.+||++.  +...+.++.+ . ...+...   +|.++|+++||+|+.+.
T Consensus       128 ~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  128 ARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred             CceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence            358999999 9888877776655 45 89999999987  4667788887 3 4566654   47899999999999853

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PLN02572 UDP-sulfoquinovose synthase

Probab=96.08  E-value=0.07  Score=55.35  Aligned_cols=117  Identities=16%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HH------------HHHHHh---cccCCCeEEEEeC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTGAVVRGFLG   99 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g------------~a~DL~---~~~~~~~v~~~~~   99 (390)
                      ..+++||.|+||+|+||+.++..|...+.  +|+++|....   ..            ....+.   +.. ...++.+.+
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~  120 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVG  120 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEEC
Confidence            45578999999999999999999998876  8999884320   00            001111   100 112333322


Q ss_pred             C----CChhhhhC--CCcEEEEcCCCCCCC-CC-CH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          100 Q----PQLENALT--GMDLVIIPAGVPRKP-GM-TR---DDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       100 t----~dl~~al~--dADiVIi~ag~p~k~-g~-~r---~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      .    .++.++++  +.|+||-.|+....+ .. +.   ...+..|+.-...+.+.+.+++....++.+
T Consensus       121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~  189 (442)
T PLN02572        121 DICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKL  189 (442)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence            1    23344555  479999988653321 11 11   233567999999999998888765555533

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.07  E-value=0.031  Score=52.51  Aligned_cols=111  Identities=11%  Similarity=0.128  Sum_probs=63.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~  108 (390)
                      |+|.|+||+|++|..++..|...+.  +++++|.+..  .....++.     .++..+.+ -+|   ++++       +.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~i~~~~~~~~~~~~   73 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWR   73 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999999988876  8999998752  22222221     12222211 112   1222       24


Q ss_pred             CCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 016424          109 GMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~tN  159 (390)
                      +.|+||..+|...  .+  ..+..   ..+..|..-...+.+.+..+.   ..+.++++|-
T Consensus        74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  134 (248)
T PRK10538         74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGS  134 (248)
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            7999999988642  22  22332   335556555444444444332   2355666654

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.07  E-value=0.057  Score=55.60  Aligned_cols=104  Identities=20%  Similarity=0.280  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVI  114 (390)
                      -++++|.|+||+|++|..++..+...+.  +++++|.++.. ....+.+..  ..+.....    .+++.+.+.+.|++|
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~--~~v~~v~~Dvsd~~~v~~~l~~IDiLI  250 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGED--LPVKTLHWQVGQEAALAELLEKVDILI  250 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcC--CCeEEEEeeCCCHHHHHHHhCCCCEEE
Confidence            3567999999999999999999998876  88889887521 111121111  11221111    123345578899999


Q ss_pred             EcCCCCCCCCCCHH---HHHHHHHH----HHHHHHHHHHH
Q 016424          115 IPAGVPRKPGMTRD---DLFNINAG----IVRTLCEGIAK  147 (390)
Q Consensus       115 i~ag~p~k~g~~r~---~l~~~N~~----ii~~ia~~I~~  147 (390)
                      ..+|.......+..   +.+..|..    +++.+.+.+.+
T Consensus       251 nnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~  290 (406)
T PRK07424        251 INHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT  290 (406)
T ss_pred             ECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99886543333332   34555654    44444444443

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=96.07  E-value=0.067  Score=51.60  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCC----CChhhhhC--CCcEEE
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ----PQLENALT--GMDLVI  114 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~--dADiVI  114 (390)
                      ||.|+||+|.+|..++..|...+.  +++++|....  ......+.+.   ..++.+.+.    .++.++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999988775  7888875431  1111122211   123322221    22334443  689999


Q ss_pred             EcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 016424          115 IPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNA  152 (390)
Q Consensus       115 i~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a  152 (390)
                      ..+|....+.  ....+.+..|+.....+.+.+.++....
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~  115 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK  115 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE
Confidence            9998653221  2334556778888888888887765443

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.064  Score=49.30  Aligned_cols=114  Identities=16%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe--CCCChhhhh-------CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL--GQPQLENAL-------TG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~--~t~dl~~al-------~d  109 (390)
                      .++|.|+||+|++|..++..+++.+.  +++++|.+.  ......++....  ..+....  ...++.+++       ..
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999988876  799999876  222233343221  1111110  011222222       36


Q ss_pred             CcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          110 MDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      .|+||..+|.....   ..+..   +.+..|..-...+++.+.+.   .+...+++++
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~s  140 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIG  140 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            89999988753211   11222   23445555445555544322   3345566554

>PRK07574 formate dehydrogenase; Provisional

Probab=96.01  E-value=0.044  Score=56.04  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|.|||. |.||+.++..+...+.  +|+-||.... .....++       .++.+   .++++.++.||+|++..
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~~~~-------g~~~~---~~l~ell~~aDvV~l~l  256 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVEQEL-------GLTYH---VSFDSLVSVCDVVTIHC  256 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhHhhc-------Cceec---CCHHHHhhcCCEEEEcC
Confidence            34579999999 9999999999887776  8999998652 1111111       12222   36789999999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...           ..+-.++-  .+.+....|++++||++
T Consensus       257 Plt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        257 PLH-----------PETEHLFD--ADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             CCC-----------HHHHHHhC--HHHHhcCCCCcEEEECC
Confidence            221           12222221  24455556899999986

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.01  E-value=0.038  Score=56.13  Aligned_cols=56  Identities=25%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .++|+|||.+|.+|..++..|.... ..+|+-||.+          |.          +.+++.+++++||+||++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence            4699999999999999999999762 4488889873          10          1235568899999999985

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.083  Score=50.23  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      +++.|+||+|++|..++..++..+.  +++++|.+......... +.. ...+..- +...+..+.+...|++|..+|..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            5889999999999999999998886  88889987521111111 111 1111110 11123345677899999999874


Q ss_pred             CCCCCCHH---HHHHHHHHHHHHHHHH
Q 016424          121 RKPGMTRD---DLFNINAGIVRTLCEG  144 (390)
Q Consensus       121 ~k~g~~r~---~l~~~N~~ii~~ia~~  144 (390)
                      .....+..   +.+..|..-...+++.
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~  117 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLEL  117 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence            32223332   3455665444444443

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=96.01  E-value=0.085  Score=52.18  Aligned_cols=106  Identities=13%  Similarity=0.002  Sum_probs=64.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHh-cc--cCCCeEEEEeCC-C---ChhhhhCC--
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADIS-HM--DTGAVVRGFLGQ-P---QLENALTG--  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~-~~--~~~~~v~~~~~t-~---dl~~al~d--  109 (390)
                      +||.|.||+|.+|+.++..|...+.  +|+++|.+..   ......+. +.  .....++.+.+. +   ++.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999988876  8999987641   11112221 00  001223333221 2   33455664  


Q ss_pred             CcEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424          110 MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCC  149 (390)
Q Consensus       110 ADiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~  149 (390)
                      .|+||-+|+......  ......+..|+.-...+.+.+.+++
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~  120 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG  120 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            599999988643221  1223344567666677777777764

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.00  E-value=0.15  Score=47.92  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.++  ......++.+.  ..++..+.. -+|   +.++       +
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999988876  899999886  23333334332  122332221 112   2222       2


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  160 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~tNP  160 (390)
                      ...|+||..+|.... +  ..+.   ...+..|+.-...+.+.+.++.   ..+.++++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            347999999886431 1  1121   2345567665555555555442   34567776643

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.00  E-value=0.034  Score=55.45  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...+++|||+ |..+...+..+.....+.++.+|+.+.  +...+.++.+.. ...+..   .+++++++.+||+||.+.
T Consensus       128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       128 DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTT  202 (326)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEec
Confidence            3469999999 999988888776544578999999987  455556664321 223433   257889999999999975


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      .
T Consensus       203 ~  203 (326)
T TIGR02992       203 P  203 (326)
T ss_pred             C
Confidence            3

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.13  Score=48.95  Aligned_cols=116  Identities=15%  Similarity=0.110  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|...+.  +|++++.+.  ......++.......++..+.+ -+|   +.+.++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999998886  899999875  2333344432211123333321 112   222233      


Q ss_pred             -CCcEEEEcCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP----GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~----g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                       ..|+||..+|.....    ..+..   ..+..|..-...+.+.+.++   ...+.++++|
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~s  145 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGIS  145 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence             679999998854221    12222   23445655555555444332   2345666665

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.00  E-value=0.051  Score=52.23  Aligned_cols=100  Identities=17%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCC-cEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGM-DLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dA-DiVIi~ag~  119 (390)
                      |+|.|+||+|.||+.++..|.+.+.  +++.+|.........+ .+... ...+.-   .....+++++. |.||-+++.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~   74 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ   74 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence            3599999999999999999999876  9999998652111111 11110 011111   12234556677 999999887


Q ss_pred             CCCCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 016424          120 PRKPGMTR---DDLFNINAGIVRTLCEGIAK  147 (390)
Q Consensus       120 p~k~g~~r---~~l~~~N~~ii~~ia~~I~~  147 (390)
                      ...++..+   .++...|+.-.+.+.++..+
T Consensus        75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~  105 (314)
T COG0451          75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA  105 (314)
T ss_pred             CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            65555433   35788999999999999988

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.097  Score=48.81  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      +++|.|+||+|++|..++..|...+.  ++++.+.+.   ......++....  .++..+.+ -+|.   ..++      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999988876  788888764   222333443221  22332221 1222   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                       .+.|+||..+|............+..|..-...+.+.+.++. ..+.++++|
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence             368999998875322111222233455555555566665553 345566554

>PRK05855 short chain dehydrogenase; Validated

Probab=96.00  E-value=0.21  Score=52.41  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh------
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA------  106 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------  106 (390)
                      .+.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++....  ..+..+.. -+|.   .+.      
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999998886  799999986  333444454322  22333221 1222   111      


Q ss_pred             -hCCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          107 -LTGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       107 -l~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       +...|++|..+|......   .+..   ..+..|.    ...+.+.+.+.+....+.|+++|-
T Consensus       389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS  452 (582)
T PRK05855        389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS  452 (582)
T ss_pred             hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             224799999999754321   2222   2344564    344445555555555566776653

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.99  E-value=0.03  Score=51.82  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..||.|||+ |++|+.++..|+..+. .+|.|+|-+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            359999999 9999999999999884 6899999773

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.96  E-value=0.12  Score=50.64  Aligned_cols=114  Identities=17%  Similarity=0.323  Sum_probs=74.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-----------CCChh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-----------QPQLE  104 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-----------t~dl~  104 (390)
                      ......|.|.||++++|..+++.++..+-  .++|||++.  ...-+..+.+..   .++.+..           ....+
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk  109 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVK  109 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHH
Confidence            44556888999988999999999998886  899999998  344444555431   2222221           12235


Q ss_pred             hhhCCCcEEEEcCCC-CCCCC--CCHHHH---HHHH----HHHHHHHHHHHHHhCCCcEEEEe
Q 016424          105 NALTGMDLVIIPAGV-PRKPG--MTRDDL---FNIN----AGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       105 ~al~dADiVIi~ag~-p~k~g--~~r~~l---~~~N----~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      +.+.+.|++|..||+ |-++.  +++.++   ++-|    ....+++.+.+.+.+ ++-|+.+
T Consensus       110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~I  171 (300)
T KOG1201|consen  110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTI  171 (300)
T ss_pred             HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEe
Confidence            567899999999995 44544  333322   2333    466788888888766 4544444

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.95  E-value=0.057  Score=49.65  Aligned_cols=74  Identities=20%  Similarity=0.122  Sum_probs=49.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+||||+|.+|+-++......++  |+.-+=.+..+-.+  +.... -.+-.+|. .+.+.++++|-|+||.+.|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~--~~~~~-i~q~Difd-~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAA--RQGVT-ILQKDIFD-LTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccc--cccce-eecccccC-hhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999998  77777666522111  01100 01112221 2334578999999999977654

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.15  Score=48.60  Aligned_cols=114  Identities=11%  Similarity=0.090  Sum_probs=63.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChhh---------hhCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLEN---------ALTG  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~~---------al~d  109 (390)
                      +.+.|+||+|++|..++..|+..+.  +|++++.+.  ......++.+.....++..+.+ -+|.++         .+..
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            4689999999999999999998876  889998875  2223333332221223443322 123211         1235


Q ss_pred             CcEEEEcCCCCCC--CC-CCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRK--PG-MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k--~g-~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t  158 (390)
                      .|+||..+|.+..  .. .+.   .+.+..|..-...+.+.+    .+... +.+++++
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vs  139 (280)
T PRK06914         82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINIS  139 (280)
T ss_pred             eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence            7999999886432  11 121   233456665554555443    43333 4455444

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.12  Score=47.90  Aligned_cols=115  Identities=14%  Similarity=0.147  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-P---QLENALT----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~----  108 (390)
                      +.++|.|+||+|++|+.++..|...+.  ++++.+.+.   ......++....  .++..+... +   +++++++    
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999998886  777776543   222333443322  234433211 1   2233333    


Q ss_pred             ---CCcEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424          109 ---GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (390)
Q Consensus       109 ---dADiVIi~ag~p~k-~--g~~---r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t  158 (390)
                         +.|+||..+|.... +  ..+   -...+..|+.-...+.+.+.+. .+++.++++|
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  139 (245)
T PRK12937         80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS  139 (245)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence               68999999986421 1  111   1233556665555555554443 3456677665

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.91  E-value=0.039  Score=54.50  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...+|+|||+ |..|...+..+.....+.++.+||.+.  +...+.++...  ...+. .   .+.++++.+||+||.+.
T Consensus       124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~-~---~~~~~av~~aDiVitaT  196 (304)
T PRK07340        124 PPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE-P---LDGEAIPEAVDLVVTAT  196 (304)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE-E---CCHHHHhhcCCEEEEcc
Confidence            4569999999 999999998886543357999999987  44555556532  12333 1   46778999999999975


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      .
T Consensus       197 ~  197 (304)
T PRK07340        197 T  197 (304)
T ss_pred             C
Confidence            4

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.23  Score=46.55  Aligned_cols=75  Identities=24%  Similarity=0.417  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------  106 (390)
                      +.++|.|+||+|++|+.++..|..++.  ++++++.+.  ......++.+.    ++..+.+ -+|.   .++       
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~   83 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTAVER   83 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999988886  799999875  22222222221    2222221 1221   122       


Q ss_pred             hCCCcEEEEcCCCC
Q 016424          107 LTGMDLVIIPAGVP  120 (390)
Q Consensus       107 l~dADiVIi~ag~p  120 (390)
                      +.+.|+||..+|..
T Consensus        84 ~~~~d~vi~~ag~~   97 (264)
T PRK12829         84 FGGLDVLVNNAGIA   97 (264)
T ss_pred             hCCCCEEEECCCCC
Confidence            24789999998864

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=95.91  E-value=0.023  Score=54.69  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCC--cEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~--~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .|||+|||+ |.+|+.++..|...+..  .+++.+|.+...     +       .+..   ..+..++++++|+||++. 
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav-   65 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV-   65 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence            379999999 99999999999887633  358888886421     0       1122   134457788999999985 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                         +|.            .+.++.+.+..+-++..+|.+.+-+.
T Consensus        66 ---kp~------------~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 ---KPD------------LAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             ---CHH------------HHHHHHHHHHhhccCCEEEEEeCCcc
Confidence               111            23444445544333344566666655

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.91  E-value=0.029  Score=56.05  Aligned_cols=65  Identities=26%  Similarity=0.378  Sum_probs=46.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|+|||. |.+|+.++..++. +..-+|+.||.......    ..     .++.   .+++.+++++||+|++..
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~----~~-----~~~~---~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        144 IKDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA----AT-----YVDY---KDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH----Hh-----hccc---cCCHHHHHHhCCEEEEeC
Confidence            34679999999 9999999998843 33338999998652211    10     1221   247889999999999986

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.90  E-value=0.042  Score=54.46  Aligned_cols=73  Identities=14%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...+|+|||+ |.+|...+..+.....+.+|.+||.+.  ....+.++.+.  ...+...   .+.++++++||+|+.+.
T Consensus       124 ~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        124 DASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCAT  197 (314)
T ss_pred             CCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEee
Confidence            3569999999 999999987665533367999999986  34555665542  2234443   46778999999997654


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      .
T Consensus       198 ~  198 (314)
T PRK06141        198 L  198 (314)
T ss_pred             C
Confidence            3

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=95.90  E-value=0.063  Score=50.79  Aligned_cols=96  Identities=21%  Similarity=0.293  Sum_probs=69.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      +||.+||. |.+|..+.-++...+ .+.-+.+||.+..+  +..+...-. .+.     .+++.+.+.+.|+||-+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~-~~~-----~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVG-RRC-----VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcC-CCc-----cccHHHHhhccceeeeeCC--
Confidence            68999999 999999998888775 35678889987632  222332211 111     1356677799999999984  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                                    .+.+++++.++-+.+.|.+|+-++-=+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          4468999999999999988876654443

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.87  E-value=0.099  Score=48.81  Aligned_cols=76  Identities=20%  Similarity=0.372  Sum_probs=49.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-C---Chhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-P---QLENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al-------  107 (390)
                      +++|.|+||+|++|+.++..|...+.  +++++|.+.  ......++...  ..++..+.+. +   ++.+++       
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999988876  899999976  23334444321  1233332211 1   222222       


Q ss_pred             CCCcEEEEcCCCC
Q 016424          108 TGMDLVIIPAGVP  120 (390)
Q Consensus       108 ~dADiVIi~ag~p  120 (390)
                      .+.|+||..+|..
T Consensus        80 ~~~d~vi~~a~~~   92 (258)
T PRK12429         80 GGVDILVNNAGIQ   92 (258)
T ss_pred             CCCCEEEECCCCC
Confidence            3689999998864

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.87  E-value=0.18  Score=47.55  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=49.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~  108 (390)
                      |+|.|+||+|++|..++..++..+.  ++++.|.++  ......++.+..   .+..+.. -+|   .+++       +.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            6899999999999999999998886  799999876  233444454321   2222221 122   2222       34


Q ss_pred             CCcEEEEcCCCC
Q 016424          109 GMDLVIIPAGVP  120 (390)
Q Consensus       109 dADiVIi~ag~p  120 (390)
                      .-|++|..+|..
T Consensus        76 ~id~li~naG~~   87 (259)
T PRK08340         76 GIDALVWNAGNV   87 (259)
T ss_pred             CCCEEEECCCCC
Confidence            689999999864

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.057  Score=51.22  Aligned_cols=111  Identities=15%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l  107 (390)
                      .+++.|+||+|++|..++..|...+.  +|++.|.+.  ......++.     .++..+.+ -+|   +.++       +
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998886  899999876  222222221     12222211 112   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC--CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKP--GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~--g~~r~---~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~t  158 (390)
                      ...|++|..+|.....  ..+..   ..+..|+.-...+.+.+..+  .+.+.+++++
T Consensus        79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~is  136 (261)
T PRK08265         79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFT  136 (261)
T ss_pred             CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            3579999998864322  22222   23444555444444433322  3456666665

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.85  E-value=0.015  Score=54.94  Aligned_cols=71  Identities=25%  Similarity=0.340  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHH-HhcccCCCeEEEEeCC--CChhhh-hCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQ--PQLENA-LTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~D-L~~~~~~~~v~~~~~t--~dl~~a-l~dADiVIi~a  117 (390)
                      |+|+|||+ |.+|++++..|...+.  +++++|.++..  +.. +++.....-+.+ .++  +-|++| +.++|.+|.+.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~~~~~v~g-d~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADELDTHVVIG-DATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhcceEEEEe-cCCCHHHHHhcCCCcCCEEEEee
Confidence            68999999 9999999999999987  89999998721  111 121110011211 111  123444 77889999976


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      |
T Consensus        75 ~   75 (225)
T COG0569          75 G   75 (225)
T ss_pred             C
Confidence            4

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.19  Score=47.36  Aligned_cols=116  Identities=22%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .+.+.|.||+|++|..++..|+..+.  +|+++|.+.  ....+.++.......++..+.. -+|   +.+++       
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999998886  899999876  3344445543111223333221 122   22222       


Q ss_pred             CCCcEEEEcCCCCCC-C-C-CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRK-P-G-MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~-g-~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|++|..+|.... + . .+..   ..+..|..-.    +...+.+.+. ..+.|++++-
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS  145 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS  145 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence            368999999986421 1 1 1222   2344554444    3333434332 3456666643

>PRK05717 oxidoreductase; Validated

Probab=95.83  E-value=0.035  Score=52.27  Aligned_cols=113  Identities=15%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeC-CCCh---hhh------
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQL---ENA------  106 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------  106 (390)
                      -+.++|.|+||+|++|..++..|...+.  ++++.|.+...  ....++.     ..+..+.. -+|.   .++      
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLG   80 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999988875  89999987521  1222221     12222211 1221   111      


Q ss_pred             -hCCCcEEEEcCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEec
Q 016424          107 -LTGMDLVIIPAGVPRKP-----GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLIS  158 (390)
Q Consensus       107 -l~dADiVIi~ag~p~k~-----g~~r---~~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~t  158 (390)
                       +...|+||..+|.....     ..+.   ...+..|..-...+.+.+..+  ...+.+|++|
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~s  143 (255)
T PRK05717         81 QFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLA  143 (255)
T ss_pred             HhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence             23479999999865321     1122   234667766666666666543  2345666665

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.83  E-value=0.055  Score=49.03  Aligned_cols=96  Identities=25%  Similarity=0.294  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-..++|.|||. |.||+.++..+...+.  +++.||.......  ...+    ..++.    .++++.++.||+|++..
T Consensus        33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~----~~~~~----~~l~ell~~aDiv~~~~   99 (178)
T PF02826_consen   33 ELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADE----FGVEY----VSLDELLAQADIVSLHL   99 (178)
T ss_dssp             -STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHH----TTEEE----SSHHHHHHH-SEEEE-S
T ss_pred             ccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccc----cccee----eehhhhcchhhhhhhhh
Confidence            445679999999 9999999999997777  9999999863222  1111    12222    36889999999999985


Q ss_pred             C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          118 G-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       118 g-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      . .|.-.++--              .+.+....|++++||++--
T Consensus       100 plt~~T~~li~--------------~~~l~~mk~ga~lvN~aRG  129 (178)
T PF02826_consen  100 PLTPETRGLIN--------------AEFLAKMKPGAVLVNVARG  129 (178)
T ss_dssp             SSSTTTTTSBS--------------HHHHHTSTTTEEEEESSSG
T ss_pred             ccccccceeee--------------eeeeeccccceEEEeccch
Confidence            3 343334311              1233445578899998744

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.14  Score=47.95  Aligned_cols=76  Identities=17%  Similarity=0.154  Sum_probs=49.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|...+.  ++++++.+.  ......++....  .++..+.+ -+|   +.++++      
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999988875  899999876  233344444322  23333321 122   223333      


Q ss_pred             -CCcEEEEcCCCC
Q 016424          109 -GMDLVIIPAGVP  120 (390)
Q Consensus       109 -dADiVIi~ag~p  120 (390)
                       .-|+||..+|..
T Consensus        83 g~id~li~~ag~~   95 (253)
T PRK06172         83 GRLDYAFNNAGIE   95 (253)
T ss_pred             CCCCEEEECCCCC
Confidence             349999998864

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.15  Score=48.23  Aligned_cols=116  Identities=16%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh---hh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---NA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~a-------  106 (390)
                      +.+++.|+||+|++|..++..|...+.  ++++.|.+.  ......++...  ..++..+.. -++..   ++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999988876  899999976  23333444322  123333221 12321   11       


Q ss_pred             hCCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 016424          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tN  159 (390)
                      +...|+||-.+|.....   ..+.   ...+..|..-...+.+..    .+..+.+.+++++-
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence            23679999998853221   1222   233455554444444444    33455566776654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.80  E-value=0.2  Score=46.83  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC--C-CC----------h
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG--Q-PQ----------L  103 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~--t-~d----------l  103 (390)
                      .+.++|.|+|++|++|..++..|+..+.  +|+++|.+.  ......++.+... .+++.+..  + .+          +
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence            4567999999999999999999988775  899999976  3344455554321 22222211  0 01          1


Q ss_pred             hhhhCCCcEEEEcCCCCCC--C--CCCHH---HHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 016424          104 ENALTGMDLVIIPAGVPRK--P--GMTRD---DLFNINAGIVRTLCEGIAK---CCPNATVNLISN  159 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k--~--g~~r~---~l~~~N~~ii~~ia~~I~~---~~p~a~iiv~tN  159 (390)
                      .+.+...|+||..+|....  +  ..+..   ..+..|..-...+.+.+..   ..+.+.+++++.
T Consensus        87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            2333467999999886322  2  22232   3355665544444444332   234556666654

>PRK06924 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.19  Score=46.92  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      |++|.|+||+|++|+.++..|+..+.  +|++.+.+.
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            35799999999999999999998886  889999865

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.79  E-value=0.2  Score=47.06  Aligned_cols=115  Identities=15%  Similarity=0.157  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChhhhh---------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLENAL---------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~~al---------  107 (390)
                      +.++|.|+||+|++|+.++..|...+.  ++++.|.+.  ......++...  ..++..+.+ -+|. +++         
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~-~~i~~~~~~~~~   85 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADE-ADIERLAEETLE   85 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCH-HHHHHHHHHHHH
Confidence            346899999999999999999988876  899999875  22222233221  123333222 1232 222         


Q ss_pred             --CCCcEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~g---~~---r~~l~~~N~~ii~~ia~~I~~~----~p~a~iiv~tN  159 (390)
                        ...|+||..+|......   .+   -...+..|+.-...+.+.+..+    .+.+.+++++.
T Consensus        86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence              35799999988632211   11   1234567777777777766554    24456666654

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.79  E-value=0.069  Score=58.79  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=60.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      .||+|||+ |.+|..++..+...+...+|..||.++. ...+.++.     ....   .++++.++++++|+||++... 
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g-----~~~~---~~~~~~~~~~~aDvVilavp~-   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLG-----VIDR---GEEDLAEAVSGADVIVLAVPV-   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCC-----CCCc---ccCCHHHHhcCCCEEEECCCH-
Confidence            68999999 9999999999998775457999999862 22222211     1111   134667889999999998631 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                                     ..+.++.+.+..+. ++.+|..++
T Consensus        74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 ---------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                           12445555555553 555555443

>PRK08643 acetoin reductase; Validated

Probab=95.79  E-value=0.21  Score=46.79  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~  108 (390)
                      +++.|+||+|++|..++..|+..+.  ++++.|.+.  ......++.+..  .++..+.. -+|   +.++       +.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4788999999999999999998876  899999876  233344444321  22222221 112   1122       23


Q ss_pred             CCcEEEEcCCCCC-CCC--CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPR-KPG--MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~-k~g--~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +.|+||..+|... .+-  .+..   ..+..|+.-    .+.+.+.+.+..+++.+++++-
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  139 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATS  139 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            6799999998642 221  1111   234455543    3333334433344567777763

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.77  E-value=0.075  Score=54.16  Aligned_cols=113  Identities=15%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--H--HHHHHhcccCCCeEEEEeC----CCChhhhhC-
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTGAVVRGFLG----QPQLENALT-  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g--~a~DL~~~~~~~~v~~~~~----t~dl~~al~-  108 (390)
                      ..+++||.|+||+|.+|+.++..|...+.  ++++++.+...  .  ...++...  ...++.+.+    ..++.++++ 
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~  132 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDADSLRKVLFS  132 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCHHHHHHHHHH
Confidence            34568999999999999999999988876  88888886511  0  11111111  112222221    123455566 


Q ss_pred             ---CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          109 ---GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 ---dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                         ++|+||.+++.+....   .+....|......+.+.+.+..-. .++++|
T Consensus       133 ~~~~~D~Vi~~aa~~~~~~---~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        133 EGDPVDVVVSCLASRTGGV---KDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             hCCCCcEEEECCccCCCCC---ccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence               5899998876432111   122345666666777777666533 344444

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.76  E-value=0.16  Score=47.63  Aligned_cols=114  Identities=21%  Similarity=0.276  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l  107 (390)
                      .+++.|+||+|++|..++..|...+.  ++++.|.+.  ......++.+..  .++..+.. -+|   +.+.       +
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999988876  899999876  233444454322  12222211 112   1111       2


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      ...|+||..+|.... +  ..+..   ..+..|..-...+.+.+..+   ...+.++++|
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is  144 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINIC  144 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEc
Confidence            357999999986321 1  12222   34556655444444444433   2345666665

>PLN02253 xanthoxin dehydrogenase

Probab=95.75  E-value=0.31  Score=46.46  Aligned_cols=76  Identities=20%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .+++.|+||+|++|..++..|+..+.  +++++|.+.  ......++..   ..++..+.. -+|   ..++++      
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998876  899999875  2223333321   123333221 122   223333      


Q ss_pred             -CCcEEEEcCCCCC
Q 016424          109 -GMDLVIIPAGVPR  121 (390)
Q Consensus       109 -dADiVIi~ag~p~  121 (390)
                       ..|++|..+|...
T Consensus        93 g~id~li~~Ag~~~  106 (280)
T PLN02253         93 GTLDIMVNNAGLTG  106 (280)
T ss_pred             CCCCEEEECCCcCC
Confidence             5899999998753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.75  E-value=0.035  Score=56.37  Aligned_cols=75  Identities=23%  Similarity=0.384  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||.|+|+ |++|+.++..|+..+ +.+|.|+|-+.                     +...+..+.+......+..+..
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            348999999 999999999999888 46899999982                     1112223333332234444321


Q ss_pred             C---CChhhhhCCCcEEEEcC
Q 016424          100 Q---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 t---~dl~~al~dADiVIi~a  117 (390)
                      .   .++.+.++++|+||.+.
T Consensus       213 ~~~~~~~~~~~~~~D~Vv~~~  233 (376)
T PRK08762        213 RVTSDNVEALLQDVDVVVDGA  233 (376)
T ss_pred             cCChHHHHHHHhCCCEEEECC
Confidence            1   12334578999999875

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.057  Score=50.20  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||+.|+||+|++|+.++..+...+.  ++++.|.+.
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999988876  899999875

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.17  Score=47.97  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al----  107 (390)
                      +.++|.|.||+|++|..++..++..+ .  .|++.+.++   +...+.++.... ..+++.+.. -+|   ..+.+    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            45689999999999999999888774 4  889999875   233445554322 113333221 112   11112    


Q ss_pred             --CCCcEEEEcCCCCCCCCC---CH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          108 --TGMDLVIIPAGVPRKPGM---TR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~g~---~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                        .+.|++|..+|.......   +.   .+.+..|..-    .+.+.+.+.+... +.++++|
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is  145 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS  145 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence              379999998887532211   11   1235556543    3445556555443 4455554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.72  E-value=0.046  Score=53.61  Aligned_cols=97  Identities=21%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -...+|+|+|+ |.+|..++..|...+.  ++.++|.+... . ..+....    .+.+. ..++.+.++++|+||.+..
T Consensus       149 l~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~-~-~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P  218 (287)
T TIGR02853       149 IHGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSAD-L-ARITEMG----LIPFP-LNKLEEKVAEIDIVINTIP  218 (287)
T ss_pred             CCCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHH-H-HHHHHCC----Ceeec-HHHHHHHhccCCEEEECCC
Confidence            34569999999 9999999999988775  89999987621 1 1111111    11111 2356788999999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNS  163 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~  163 (390)
                      .+         ++  +       ...+....|+++++.+ ++|-.+
T Consensus       219 ~~---------ii--~-------~~~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       219 AL---------VL--T-------ADVLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             hH---------Hh--C-------HHHHhcCCCCeEEEEeCcCCCCC
Confidence            21         11  1       1223444578888877 688654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.72  E-value=0.053  Score=52.46  Aligned_cols=87  Identities=16%  Similarity=0.227  Sum_probs=56.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +|||+|||. |.+|..++..+...+ .+.-+.++|.+..  .+.++.+. .  ....+   +|+++.+.++|+|+++++.
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a~~-~--~~~~~---~~~~ell~~~DvVvi~a~~   71 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLE--KAENLASK-T--GAKAC---LSIDELVEDVDLVVECASV   71 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHHHh-c--CCeeE---CCHHHHhcCCCEEEEcCCh
Confidence            479999999 999999998887654 2334668998752  12223221 1  12232   4666767999999999731


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA  152 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a  152 (390)
                                      ....+++..+.+...+.
T Consensus        72 ----------------~~~~~~~~~al~~Gk~V   88 (265)
T PRK13304         72 ----------------NAVEEVVPKSLENGKDV   88 (265)
T ss_pred             ----------------HHHHHHHHHHHHcCCCE
Confidence                            12456666666666554

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.18  Score=47.54  Aligned_cols=76  Identities=30%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      +++|.|+||+|++|..++..|+..+.  +|++.|.+.  +.....++...   .++..+.. -+|   ..++++      
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~   76 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAH   76 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999998876  899999875  22222333211   13333322 122   222222      


Q ss_pred             -CCcEEEEcCCCCC
Q 016424          109 -GMDLVIIPAGVPR  121 (390)
Q Consensus       109 -dADiVIi~ag~p~  121 (390)
                       ..|++|..+|...
T Consensus        77 g~id~lv~~ag~~~   90 (257)
T PRK07024         77 GLPDVVIANAGISV   90 (257)
T ss_pred             CCCCEEEECCCcCC
Confidence             2699999988643

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=95.71  E-value=0.052  Score=52.92  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~ag~  119 (390)
                      |||.|+||+|.+|+.++..|...+   +++.+|.... ..         ..+++-   ...+.++++  +.|+||-+++.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~---------~~Dl~d---~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DY---------CGDFSN---PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cc---------cCCCCC---HHHHHHHHHhcCCCEEEECCcc
Confidence            689999999999999999888776   4677776421 00         011111   112345555  58999998875


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ....  ..........|+.....+++.+.+..  ..++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            3321  12233445678888889999888765  3555444

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.69  E-value=0.078  Score=53.10  Aligned_cols=67  Identities=21%  Similarity=0.205  Sum_probs=47.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -+.+||+|||. |.+|.+++..|...+.  +++.++.+....  .+..... .  +..    .+..++++.||+|+++.
T Consensus        15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~-G--~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEAD-G--FEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHC-C--Cee----CCHHHHHhcCCEEEEcC
Confidence            34579999999 9999999999998887  788777754111  1111111 1  121    25678999999999986

>PRK07832 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.27  Score=46.82  Aligned_cols=116  Identities=20%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCCh----------hhhhC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~dl----------~~al~  108 (390)
                      +++.|+||+|++|..++..++..+.  ++++++.+.  ......++...... .+..+. .-+|.          .+.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHG   77 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            3789999999999999999988875  789999876  33334444332211 111111 11121          12234


Q ss_pred             CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 016424          109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  160 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tNP  160 (390)
                      ..|+||..+|.....   ..+..   ..+..|..-...+.+.    +.+....+.+++++-.
T Consensus        78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~  139 (272)
T PRK07832         78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA  139 (272)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence            689999999864321   12222   2355565544444444    3333334667666543

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=95.68  E-value=0.046  Score=50.26  Aligned_cols=109  Identities=18%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCC--cEEEEcCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-GAVVRGFLGQPQLENALTGM--DLVIIPAGV  119 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dA--DiVIi~ag~  119 (390)
                      |.|+||+|.+|+.++..|...+.  +++-+.... ......+...... ..++.   ...++.+.+++.  |.||.+++.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dl~---~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVEFVIGDLT---DKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEEEEESETT---SHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEEEEEeecc---ccccccccccccCceEEEEeecc
Confidence            78999999999999999998886  444344333 2222221111100 01111   113456677777  999999987


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.-  ....-.+.+..|+...+.+.+.+.+... ..++..+
T Consensus        76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~s  115 (236)
T PF01370_consen   76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLS  115 (236)
T ss_dssp             SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccc
Confidence            531  1134557788999999999999999887 4455454

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.68  E-value=0.056  Score=53.22  Aligned_cols=95  Identities=18%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....||.|||+ |.+|..++..|...+.  ++..+|.+. ....+.++   .  .....   ..++.+.++++|+||.+.
T Consensus       150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~~---~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        150 IHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPFH---LSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceeec---HHHHHHHhCCCCEEEECC
Confidence            35679999999 9999999999988775  899999985 22222222   1  12111   235678899999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCc
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVN  162 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd  162 (390)
                      ..+    +           +-+   ..+....|+++++.+ ++|-+
T Consensus       219 p~~----~-----------i~~---~~l~~~~~g~vIIDla~~pgg  246 (296)
T PRK08306        219 PAL----V-----------LTK---EVLSKMPPEALIIDLASKPGG  246 (296)
T ss_pred             Chh----h-----------hhH---HHHHcCCCCcEEEEEccCCCC
Confidence            211    0           111   123334578888755 67755

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=95.66  E-value=0.044  Score=53.77  Aligned_cols=63  Identities=17%  Similarity=0.347  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||. |.+|++++..|...+.  ++..||++..   +.++...  .  ....   .+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~--g--~~~~---~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSL--G--AVSV---ETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHc--C--Ceec---CCHHHHHhcCCEEEEeC
Confidence            58999999 9999999999998886  8889998751   2233221  1  1221   24567789999999985

>PLN03139 formate dehydrogenase; Provisional

Probab=95.64  E-value=0.07  Score=54.55  Aligned_cols=94  Identities=24%  Similarity=0.266  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|+|||. |.||+.++..+...+.  +|+.||.... .....   +.    .+..   ..++++.+++||+|++..
T Consensus       197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~~---~~----g~~~---~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELEK---ET----GAKF---EEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhHh---hc----Ccee---cCCHHHHHhhCCEEEEeC
Confidence            45679999999 9999999999887665  8899998642 11111   11    1222   236889999999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                        |..         ..+-.++-  .+.+....|++++||.+
T Consensus       264 --Plt---------~~T~~li~--~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        264 --PLT---------EKTRGMFN--KERIAKMKKGVLIVNNA  291 (386)
T ss_pred             --CCC---------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence              221         12222221  24555567899999886

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.17  Score=48.60  Aligned_cols=115  Identities=19%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l  107 (390)
                      ++.+.|.||+|++|..++..|+..+.  +|++.|.+.  +.....++...  ..++..+.. -+|   +.++       +
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34688999999999999999998886  799999886  33334444322  123333221 122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~----~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|+||..+|.....   ..+..   ..+..|..-..    .+.+.+.+....+.+++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3469999999864321   12222   23455554444    44444444443456666653

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.62  E-value=0.078  Score=49.88  Aligned_cols=112  Identities=20%  Similarity=0.265  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC----CCChhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG----QPQLENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~----t~dl~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  ++++.|.+..  .....++..     .+..+..    ..+..+++       
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERF   78 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999998886  8999998862  233333321     1222111    11222222       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC----CPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~----~p~a~iiv~tN  159 (390)
                      ...|++|..+|.... +  ..+.   ...+..|..-...+.+.+..+    ..++.+++++-
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            368999999886421 1  1122   233556655555555554332    34466666654

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.61  E-value=0.42  Score=46.01  Aligned_cols=144  Identities=19%  Similarity=0.166  Sum_probs=79.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ++||+|+|++|.+|+.++..+...+-+.-+.++|.+......  .   . ...+..   .+|+++.++++|+||... .|
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~---~-~~~i~~---~~dl~~ll~~~DvVid~t-~p   70 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--Q---G-ALGVAI---TDDLEAVLADADVLIDFT-TP   70 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--c---C-CCCccc---cCCHHHhccCCCEEEECC-CH
Confidence            479999998899999999887766544445568887521110  1   1 122332   357888888999999654 11


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH---HHHHH
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV---VRANT  196 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds---~R~~~  196 (390)
                                     ....+++....+++.+.+  +-  |.+....-+ +.+..+.. ...-++.. ..+..   .++-.
T Consensus        71 ---------------~~~~~~~~~al~~G~~vv--ig--ttG~s~~~~-~~l~~aa~-~~~v~~s~n~s~g~~~~~~l~~  129 (257)
T PRK00048         71 ---------------EATLENLEFALEHGKPLV--IG--TTGFTEEQL-AELEEAAK-KIPVVIAPNFSIGVNLLMKLAE  129 (257)
T ss_pred             ---------------HHHHHHHHHHHHcCCCEE--EE--CCCCCHHHH-HHHHHHhc-CCCEEEECcchHHHHHHHHHHH
Confidence                           123566666666654433  22  333222211 12222221 11122222 22222   34455


Q ss_pred             HHHHHhCCCCCCCceEEeecccC
Q 016424          197 FVAEVLGLDPRDVDVPVVGGHAG  219 (390)
Q Consensus       197 ~la~~l~v~p~~V~~~ViG~Hg~  219 (390)
                      .+++.|+  +  .++-++--|+.
T Consensus       130 ~aa~~l~--~--~d~ei~E~HH~  148 (257)
T PRK00048        130 KAAKYLG--D--YDIEIIEAHHR  148 (257)
T ss_pred             HHHHhcC--C--CCEEEEEccCC
Confidence            5556665  2  67888998986

>PRK05865 hypothetical protein; Provisional

Probab=95.61  E-value=0.07  Score=59.73  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      |||.|+||+|.+|+.++..|...+.  +++++|.+....    +.. . ...+..- ....++.++++++|+||.+++..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            6899999999999999999988876  889998764111    100 0 0111110 01234567789999999998753


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      . +      ....|+.-...+.+.+.+.+.. .++++|.+.
T Consensus        73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            2 1      3456777777777777766532 566666554

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.46  Score=44.56  Aligned_cols=113  Identities=12%  Similarity=0.095  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~  108 (390)
                      +.+.|+||+|++|..++..+...+.  .|++.|.+.  ......++....  .++..+.. -+|   ..++       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999998876  899999876  233444444321  23333321 122   1111       24


Q ss_pred             CCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGI----AKCCPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t  158 (390)
                      ..|+||..+|.... +  ..+..   ..+..|..-...+.+.+    .+....+.++++|
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is  137 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV  137 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence            67999998875321 1  22332   23555554444444444    3334456777766

>PLN02928 oxidoreductase family protein

Probab=95.58  E-value=0.051  Score=54.75  Aligned_cols=105  Identities=23%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh--cccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~--~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      -..++|.|||. |.||+.++..+...+.  +|..||..........+.  ...............++++.++.||+|++.
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            44679999999 9999999999887776  899999863111111110  000000000000124788999999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..  ..+         .|-.++-  .+.+....|++++||++=
T Consensus       234 lP--lt~---------~T~~li~--~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        234 CT--LTK---------ETAGIVN--DEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             CC--CCh---------HhhcccC--HHHHhcCCCCeEEEECCC
Confidence            52  111         1111221  345555678999999973

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.58  E-value=0.19  Score=47.32  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-------C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-------~  108 (390)
                      ++|.|+||+|++|..++..|+..+.  ++++.|.+.  ......++....  ..+..+.+ -+|.   .+++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999998888875  899999876  233334444332  23333322 1222   1222       3


Q ss_pred             CCcEEEEcCCCCCCCC---C-CHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 016424          109 GMDLVIIPAGVPRKPG---M-TRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  160 (390)
Q Consensus       109 dADiVIi~ag~p~k~g---~-~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~tNP  160 (390)
                      +.|+||..+|......   . +..   ..+..|..-...+.+.+..+.  ..+.+++++-.
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6799999988643221   1 222   235566655555555554322  23556666543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.58  E-value=0.058  Score=48.48  Aligned_cols=59  Identities=25%  Similarity=0.429  Sum_probs=42.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-+.+||+|||.|.-||.+++.+|...+.  .+.+.+..                       |.++++-++.||+||.+.
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~   87 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAV   87 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-S
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeee
Confidence            35667999999988899999999988753  44444432                       347788899999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus        88 G~~~   91 (160)
T PF02882_consen   88 GKPN   91 (160)
T ss_dssp             SSTT
T ss_pred             cccc
Confidence            8774

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.57  E-value=0.068  Score=49.48  Aligned_cols=35  Identities=17%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..||.|+|+ |++|+.++..|+..+ +.+|+++|-+.
T Consensus        21 ~s~VlIiG~-gglG~evak~La~~G-Vg~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLVLSG-IGSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEECCc
Confidence            359999999 999999999999988 47899999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.27  Score=45.73  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh---h-------h
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---N-------A  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~-------a  106 (390)
                      +.+++.|+||+|++|..++..|...+.  +++++|.++  ......++.+..  ..+..+.. -+|..   +       .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSA   80 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999988875  899999876  223333343321  12222211 12221   1       1


Q ss_pred             hCCCcEEEEcCCCCC----CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPR----KP--GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~----k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~t  158 (390)
                      +...|+||.++|...    .+  ..+..   ..+..|..-...+.+.+..+.   +.+.+++++
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  144 (250)
T PRK07774         81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS  144 (250)
T ss_pred             hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence            236899999998632    11  12222   234566655555555555432   245666655

>PRK09242 tropinone reductase; Provisional

Probab=95.54  E-value=0.37  Score=45.28  Aligned_cols=78  Identities=18%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~a  106 (390)
                      +.+++.|+||+|++|..++..+...+.  +|++.+.+.  ......++.......++..+... ++          ..+.
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH   85 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998876  899999876  33344455433112233333211 11          1123


Q ss_pred             hCCCcEEEEcCCC
Q 016424          107 LTGMDLVIIPAGV  119 (390)
Q Consensus       107 l~dADiVIi~ag~  119 (390)
                      +...|+||..+|.
T Consensus        86 ~g~id~li~~ag~   98 (257)
T PRK09242         86 WDGLHILVNNAGG   98 (257)
T ss_pred             cCCCCEEEECCCC
Confidence            4567999999986

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.53  E-value=0.069  Score=53.08  Aligned_cols=72  Identities=13%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....++|||+ |..+...+..+..-..+.++.+||.+.  +...+..+.+.  ...+...   ++.++++++||+|+.+.
T Consensus       127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence            3569999999 988888887776655679999999987  34444444432  2345543   46789999999999864

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.53  E-value=0.01  Score=60.02  Aligned_cols=72  Identities=25%  Similarity=0.301  Sum_probs=46.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEe--C--CCChhhhhCCCcEEEEcC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL--G--QPQLENALTGMDLVIIPA  117 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~--~--t~dl~~al~dADiVIi~a  117 (390)
                      |.|+|+ |.+|+.++..|...+...++++.|.+..  ...+.++   . ..+++...  .  ..++.+.++++|+||.++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~---~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL---L-GDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-----T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc---c-ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            789999 9999999999999887669999999862  2333322   1 12222221  1  123667899999999998


Q ss_pred             CCC
Q 016424          118 GVP  120 (390)
Q Consensus       118 g~p  120 (390)
                      |..
T Consensus        76 gp~   78 (386)
T PF03435_consen   76 GPF   78 (386)
T ss_dssp             SGG
T ss_pred             ccc
Confidence            644

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.11  Score=49.59  Aligned_cols=113  Identities=13%  Similarity=0.077  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~d  109 (390)
                      +++|.|+||+|++|+.++..|+..+.  +|++.|.+...  ..++.... ..++..+.. -+|   +.+++       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAA--RADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHH--HHHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999988876  89999987521  11222211 112222211 122   22222       25


Q ss_pred             CcEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          110 MDLVIIPAGVPRK---PGMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k---~g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      .|+||..+|....   ...+..   ..+..|+.-...+.+.+..+   ...+.++++|
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iS  136 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNIT  136 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence            7999999986421   122332   33566766555555554332   2234566665

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.52  E-value=0.095  Score=54.03  Aligned_cols=125  Identities=25%  Similarity=0.317  Sum_probs=74.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH---HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g---~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      +.++|.|+|+ |.+|..++..|+..+.  +++++|.+....   ...+|...    .++.+.+. ...+...++|+||.+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEEC
Confidence            3569999999 8899999999999887  899999975222   22333221    23333322 112446789999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcccHHHHHHHHHHh
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~~t~i~ae~~~~~  175 (390)
                      +|.+...- .....-..+++++...+...... + ..+|-+|  |==.+++.+++.++...
T Consensus        76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            98753211 11112234666666655544432 2 3455554  44446667777777653

>PRK06196 oxidoreductase; Provisional

Probab=95.52  E-value=0.1  Score=51.13  Aligned_cols=112  Identities=18%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhh-------hCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENA-------LTGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~a-------l~dA  110 (390)
                      .++|.|.||+|++|..++..|+..+.  +|++.+.+.  ......++..... ..++.-   ..+..++       +...
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d---~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLAD---LESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC---HHHHHHHHHHHHhcCCCC
Confidence            45899999999999999999998886  899999875  2222333322110 011110   0111111       2468


Q ss_pred             cEEEEcCCCCCCCCC----CHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          111 DLVIIPAGVPRKPGM----TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       111 DiVIi~ag~p~k~g~----~r~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |+||..+|....+..    .-...+..|..    +.+.+.+.+.+.. .+.|+++|
T Consensus       101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS  155 (315)
T PRK06196        101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS  155 (315)
T ss_pred             CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence            999999986432211    11233444543    3555555555433 45666665

>PLN02686 cinnamoyl-CoA reductase

Probab=95.52  E-value=0.22  Score=50.23  Aligned_cols=109  Identities=10%  Similarity=0.127  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcc---c-CCCeEEEEeC----CCChhhhhC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM---D-TGAVVRGFLG----QPQLENALT  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~---~-~~~~v~~~~~----t~dl~~al~  108 (390)
                      ..++++|.|.||+|.+|+.++..|+..+.  +++++..+. ......++...   . ....+..+.+    ..++.++++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            45678999999999999999999998886  777655443 11111222110   0 0012333221    123567788


Q ss_pred             CCcEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHh
Q 016424          109 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKC  148 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~--~r~~l~~~N~~ii~~ia~~I~~~  148 (390)
                      ++|.|+-+++.....+.  ....+...|+.-...+.+.+.+.
T Consensus       128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~  169 (367)
T PLN02686        128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT  169 (367)
T ss_pred             hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence            99999987765322221  12344556777788888887765

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.52  E-value=0.48  Score=44.54  Aligned_cols=115  Identities=15%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~d  109 (390)
                      .+.+.|+|++|++|..++..|+..+.  +++++|.........++....  .++..+.. -+|   ..+.+       ..
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999998876  788888765333333343221  22332221 122   22222       35


Q ss_pred             CcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 016424          110 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       110 ADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~----~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .|++|..+|.... +  ..+..   ..+..|..-..    .+.+.+.+..+.+.+++++.
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            7999999987532 1  12222   33555554433    44444444445577776653

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.089  Score=49.51  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .++|.|+||+|++|..++..++..+.  +++++|.+.
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            46899999999999999999998876  899999876

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.21  Score=47.43  Aligned_cols=112  Identities=19%  Similarity=0.131  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-------C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-------~  108 (390)
                      ++|.|+||+|++|+.++..|...+.  ++++.|.+.  ......++....  .++..+.+ -+|.   .+.+       .
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999998876  889999876  233334444322  22322221 1222   2222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..|+||..+|.....   ..+..   ..+..|..-.    +.+.+.+.+.. .+.++++|
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vs  135 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIA  135 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEEC
Confidence            689999998864321   12222   2345564433    33444444433 34566555

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.50  E-value=0.11  Score=51.08  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=51.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|+|+ |++|..++..|+..+. ..|.|+|.+.                     +...+..|.......+++.+.+.
T Consensus        20 s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~   97 (286)
T cd01491          20 SNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP   97 (286)
T ss_pred             CcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            49999999 9999999999999884 6899999874                     01112223333334566666533


Q ss_pred             CChhhhhCCCcEEEEcC
Q 016424          101 PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ~dl~~al~dADiVIi~a  117 (390)
                      .+ ++-+.+.|+||.+.
T Consensus        98 ~~-~~~l~~fdvVV~~~  113 (286)
T cd01491          98 LT-TDELLKFQVVVLTD  113 (286)
T ss_pred             CC-HHHHhcCCEEEEec
Confidence            23 47799999998885

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=95.50  E-value=0.026  Score=53.43  Aligned_cols=94  Identities=19%  Similarity=0.297  Sum_probs=61.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc------hHHH---HHHHhccc-CCC------eEEEEeCCCChhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGV---TADISHMD-TGA------VVRGFLGQPQLEN  105 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~------~~g~---a~DL~~~~-~~~------~v~~~~~t~dl~~  105 (390)
                      -||+|+|. |-+|+..|.+++..+.  ++.||||.+      +...   ..+|.... .+.      .+...++|+++.|
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            38999997 9999999999999998  999999987      1222   22333211 111      2222345788889


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCc
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNA  152 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a  152 (390)
                      ..++|=.|=-++              .+.+..-+.+-+++.+.. |..
T Consensus        81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t  114 (313)
T KOG2305|consen   81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT  114 (313)
T ss_pred             HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce
Confidence            888874432222              344556677778887776 444

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.50  E-value=0.053  Score=56.83  Aligned_cols=102  Identities=13%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc-cCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~-~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      +|+|||. |.+|.+++..|+..+.  +|++||++..  .+.++... .....+..+....++.++++++|+|+++.-   
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~--~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~---   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPE--KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK---   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHH--HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence            4899999 9999999999999987  8999999762  22233322 101123332211233334567999998852   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC--CCccc
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN--PVNST  164 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tN--Pvd~~  164 (390)
                       +|.           .+.++...+..+ .++.+||..||  |.+..
T Consensus        73 -~~~-----------~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~  106 (467)
T TIGR00873        73 -AGA-----------PVDAVINQLLPLLEKGDIIIDGGNSHYPDTE  106 (467)
T ss_pred             -CcH-----------HHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence             221           233444455554 46778888876  45444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.49  E-value=0.057  Score=54.42  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=52.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...++|||+ |..+...+..+..--.+.++.+||++.  ....+.++.+.  ..++..   .++.++++++||+|+.+.
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            468999999 988877776555444579999999987  45566666652  234554   247899999999999865

>PRK07069 short chain dehydrogenase; Validated

Probab=95.49  E-value=0.35  Score=44.98  Aligned_cols=114  Identities=21%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC-c--hHHHHHHHhcccCCCeEEEEe-CCCC---hh-------hhhC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT  108 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~-~--~~g~a~DL~~~~~~~~v~~~~-~t~d---l~-------~al~  108 (390)
                      ||.|+||+|++|..++..|...+.  ++++.|.+ .  ......++........+..+. .-+|   +.       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            588999999999999999988876  89999987 3  233333443221111111111 1112   11       2234


Q ss_pred             CCcEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r---~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..|+||..+|.....   ..+.   ...+..|+.    ..+.+.+.+.+.. .+.+++++.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss  138 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISS  138 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecC
Confidence            679999999865321   1122   234556665    5666666666544 345665553

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.48  E-value=0.19  Score=49.16  Aligned_cols=121  Identities=18%  Similarity=0.229  Sum_probs=80.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hh-------hhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LE-------NAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~-------~al  107 (390)
                      ++.|.|.|||.|||..+|+.++..|.  .++|+....  ++-++.++.......++.....+ +|   .+       .-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            45778889999999999999999886  778887765  34454666654321223332211 22   22       345


Q ss_pred             CCCcEEEEcCCCCCCCCC-C---H---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 016424          108 TGMDLVIIPAGVPRKPGM-T---R---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~-~---r---~~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t  165 (390)
                      -+.|+.|..||+.+ .+. +   .   ...+..|    +..-+...+.+.+.+ ++-|++++...+-+.
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~  156 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP  156 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence            68999999999988 431 1   1   1234444    677778888888887 898888877665543

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.46  E-value=0.054  Score=51.18  Aligned_cols=110  Identities=15%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC--C---CChhhhh-CCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENAL-TGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~--t---~dl~~al-~dADi  112 (390)
                      .+++||.|+||+|++|+.++..|..++.  +|+++..+..... ..+..   ...++.+.+  +   .++.+++ .++|+
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~-~~~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~   88 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAK-TSLPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDA   88 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHH-Hhccc---CCceEEEEeeCCCCHHHHHHHhhcCCCE
Confidence            4568999999999999999999988875  7777765542111 11111   112222221  1   1344566 68999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      ||..+|.....+..  .....|..-...+.+.+.+.... .++++
T Consensus        89 vi~~~g~~~~~~~~--~~~~~n~~~~~~ll~a~~~~~~~-~iV~i  130 (251)
T PLN00141         89 VICATGFRRSFDPF--APWKVDNFGTVNLVEACRKAGVT-RFILV  130 (251)
T ss_pred             EEECCCCCcCCCCC--CceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence            99988754321110  11122333345555555554433 34444

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.46  E-value=0.033  Score=51.56  Aligned_cols=117  Identities=21%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      -..++|+|||.|.-||.+++.+|.+.+.  .+.++|++.  .......+.|..+  ..+-.  +.++.+.++.||+||.+
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~~--~~~l~~~~~~ADIVIsA  133 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTDE--EAMTLDCLSQSDVVITG  133 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccch--hhHHHHHhhhCCEEEEc
Confidence            4567999999988899999999998874  889999876  1100011112111  00000  11267889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      .|.|.-.  -..+                 -..|++++|.++--.|.--    .+..+++.+.|.  +|-
T Consensus       134 vG~~~~~--i~~d-----------------~ik~GavVIDVGi~~dvd~----~v~~~as~iTPv--VGp  178 (197)
T cd01079         134 VPSPNYK--VPTE-----------------LLKDGAICINFASIKNFEP----SVKEKASIYVPS--IGK  178 (197)
T ss_pred             cCCCCCc--cCHH-----------------HcCCCcEEEEcCCCcCccH----hHHhhcCEeCCC--cCH
Confidence            9877520  0011                 1247888887753333321    223455556664  777

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.46  E-value=0.3  Score=49.06  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=74.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCC-CcEEE
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVI  114 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d-ADiVI  114 (390)
                      ...+..+|+|+|+ |++|......++..+  .+++.+|+++. ...+.+|.--   .-+.. . ..|.-+++++ +|+||
T Consensus       163 ~~~pG~~V~I~G~-GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd---~~i~~-~-~~~~~~~~~~~~d~ii  234 (339)
T COG1064         163 NVKPGKWVAVVGA-GGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD---HVINS-S-DSDALEAVKEIADAII  234 (339)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc---EEEEc-C-CchhhHHhHhhCcEEE
Confidence            4556789999999 999998887777666  49999999873 4455555311   11111 1 1233344444 99999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-cc-c-HHHHHHHHHHhCCCCCCceeecc
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NS-T-VPIAAEVFKKAGTYDPKKLLGVT  187 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv-d~-~-t~i~ae~~~~~s~~p~~kviG~t  187 (390)
                      .+++ +.                  .+-..+.-..+++.++.+.+|- .. . .+.. .++     +...+|.|+.
T Consensus       235 ~tv~-~~------------------~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~-~li-----~~~~~i~GS~  285 (339)
T COG1064         235 DTVG-PA------------------TLEPSLKALRRGGTLVLVGLPGGGPIPLLPAF-LLI-----LKEISIVGSL  285 (339)
T ss_pred             ECCC-hh------------------hHHHHHHHHhcCCEEEEECCCCCcccCCCCHH-Hhh-----hcCeEEEEEe
Confidence            9986 32                  3344555567899999999994 33 2 1111 111     2346888884

>PRK09186 flagellin modification protein A; Provisional

Probab=95.45  E-value=0.2  Score=46.85  Aligned_cols=78  Identities=19%  Similarity=0.115  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-C---CCChhhhhCC----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-G---QPQLENALTG----  109 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~---t~dl~~al~d----  109 (390)
                      +.++|.|+||+|++|..++..|...+.  ++++.+.+.  ......++........+.... .   .+++.++++.    
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   80 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK   80 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999998876  889998875  233444443211111222111 1   1223333332    


Q ss_pred             ---CcEEEEcCCC
Q 016424          110 ---MDLVIIPAGV  119 (390)
Q Consensus       110 ---ADiVIi~ag~  119 (390)
                         .|+||..+|.
T Consensus        81 ~~~id~vi~~A~~   93 (256)
T PRK09186         81 YGKIDGAVNCAYP   93 (256)
T ss_pred             cCCccEEEECCcc
Confidence               6999998864

>PRK08328 hypothetical protein; Provisional

Probab=95.45  E-value=0.064  Score=50.86  Aligned_cols=35  Identities=34%  Similarity=0.563  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..||.|+|+ |++|+.++..|+..+ +.+|+|+|-|.
T Consensus        27 ~~~VlIiG~-GGlGs~ia~~La~~G-vg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGV-GGLGSPVAYYLAAAG-VGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCc
Confidence            348999999 999999999999888 47899999875

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.43  E-value=0.37  Score=45.02  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CC---ChhhhhC-CCcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENALT-GMDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~---dl~~al~-dADiVI  114 (390)
                      ++|.|+||+|++|..++..|...+.  ++++.+.+.  ......+.....  ..+....+ -+   ++..++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            4799999999999999999998875  788888765  122222222111  12222211 12   2334444 899999


Q ss_pred             EcCCCCC
Q 016424          115 IPAGVPR  121 (390)
Q Consensus       115 i~ag~p~  121 (390)
                      ..+|.+.
T Consensus        79 ~~ag~~~   85 (257)
T PRK09291         79 NNAGIGE   85 (257)
T ss_pred             ECCCcCC
Confidence            9998653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.43  E-value=0.067  Score=54.04  Aligned_cols=74  Identities=19%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HHHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|+|+ |++|+.++..|+..+ +.+|.|+|-|.     +                ...+..|........++.+...
T Consensus        29 ~~VlivG~-GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~  106 (355)
T PRK05597         29 AKVAVIGA-GGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR  106 (355)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence            49999999 999999999999887 46899999874     0                1112233333323444443211


Q ss_pred             ---CChhhhhCCCcEEEEcC
Q 016424          101 ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ---~dl~~al~dADiVIi~a  117 (390)
                         .+..+-++++|+||.+.
T Consensus       107 i~~~~~~~~~~~~DvVvd~~  126 (355)
T PRK05597        107 LTWSNALDELRDADVILDGS  126 (355)
T ss_pred             cCHHHHHHHHhCCCEEEECC
Confidence               22235689999999986

>PRK07411 hypothetical protein; Validated

Probab=95.42  E-value=0.052  Score=55.54  Aligned_cols=74  Identities=18%  Similarity=0.268  Sum_probs=50.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|||+ |++|+.++..|+..+. .+|.|+|-|.     +.                ..+..|.+.....+++.+...
T Consensus        39 ~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~  116 (390)
T PRK07411         39 ASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR  116 (390)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence            49999999 9999999999999884 6899999874     11                112233333333455554321


Q ss_pred             ---CChhhhhCCCcEEEEcC
Q 016424          101 ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ---~dl~~al~dADiVIi~a  117 (390)
                         .+..+-++++|+||-+.
T Consensus       117 ~~~~~~~~~~~~~D~Vvd~~  136 (390)
T PRK07411        117 LSSENALDILAPYDVVVDGT  136 (390)
T ss_pred             cCHHhHHHHHhCCCEEEECC
Confidence               12335689999999985

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.40  E-value=0.0078  Score=51.47  Aligned_cols=73  Identities=25%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|+|++|.+|+.++..+...+-..=+..+|.++......|+.+...  ...+..   ++|+++.+..+|+||-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEcC
Confidence            6999999999999999999998664444567787752222233333221  234443   358889999999887754

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.40  E-value=0.18  Score=47.59  Aligned_cols=115  Identities=19%  Similarity=0.273  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~d  109 (390)
                      .+++.|+||+|++|..++..|+..+.  ++++++.++.......+....  .++..+.. -+|   ..+++       ..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999998887  888888765333333333221  23332221 122   22222       35


Q ss_pred             CcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          110 MDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       110 ADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .|++|..+|.....   ..+..   ..+..|..    +.+.+.+.+.+....+.|++++-
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS  143 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS  143 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            79999999864321   11222   23445543    34444555544443466776653

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.67  Score=43.29  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhh-------h
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LEN-------A  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~-------a  106 (390)
                      ..++|.|+||+|+||..++..|...+.  ++++.|.++  ......++....  .++..+.. -+|   +..       .
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998886  899999876  223333443211  12222221 122   111       1


Q ss_pred             hCCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 016424          107 LTGMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (390)
Q Consensus       107 l~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~tN  159 (390)
                      +...|+||..+|...  ++  ..+..   ..+..|+.-...+.+.+..+-  ..+.+++++.
T Consensus        80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            246899999998632  22  22222   335556555555555554431  1245666653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.39  E-value=0.31  Score=45.10  Aligned_cols=114  Identities=18%  Similarity=0.273  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------  107 (390)
                      .+++|.|+||+|++|..++..|..++.  +|++++.+.  ......++....  .++..+.+. +|   +.+.+      
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999988876  899999875  233333443321  234443321 12   22222      


Q ss_pred             -CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424          108 -TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGI----AKCCPNATVNLIS  158 (390)
Q Consensus       108 -~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t  158 (390)
                       ...|+||..+|.... +  ..+..   ..+..|+.-...+.+.+    .+.. ...+++++
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~s  141 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTS  141 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEe
Confidence             368999999875431 1  22332   23455555444444444    3333 34555554

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=95.39  E-value=0.13  Score=49.76  Aligned_cols=109  Identities=11%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhh----hCCCcEEEEcCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV  119 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~a----l~dADiVIi~ag~  119 (390)
                      |.|+||+|.+|+.++..|...+. .++.++|..........+........+..   ...++..    +.+.|+||-.++.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999988873 36788886542111111111100011111   1112221    2589999999986


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.....+.......|+.....+.+.+.+...  .++.+|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            5322233445667888888888888877653  355454

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.34  Score=45.04  Aligned_cols=76  Identities=25%  Similarity=0.286  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      +.+++.|+||+|++|+.++..|...+.  ++++++.+..  .....++.   ...++..+.+ -+|   +.+++      
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~   78 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAAR   78 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999988875  8999998752  22233332   1223333322 122   22222      


Q ss_pred             -CCCcEEEEcCCCC
Q 016424          108 -TGMDLVIIPAGVP  120 (390)
Q Consensus       108 -~dADiVIi~ag~p  120 (390)
                       .+.|+||..+|..
T Consensus        79 ~~~id~vi~~ag~~   92 (252)
T PRK06138         79 WGRLDVLVNNAGFG   92 (252)
T ss_pred             cCCCCEEEECCCCC
Confidence             3789999998864

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.38  E-value=0.3  Score=45.31  Aligned_cols=116  Identities=18%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      ++++.|+||+|++|..++..|...+.  +|++.+.+.  ......++...  ..++..+... ++   +.+++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999988886  899999876  22233444322  2344433321 12   22233       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP  160 (390)
                      .+.|+||.++|......   .+..   ..+..|..-...+.+.+..+   ...+.+++++..
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~  144 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISST  144 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcch
Confidence            37899999988653221   1222   23455554333444444332   223445555543

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=95.38  E-value=0.12  Score=50.24  Aligned_cols=108  Identities=11%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCC-hhhhh-----CCCcEEEEcC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA  117 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~d-l~~al-----~dADiVIi~a  117 (390)
                      |.|+||+|.+|+.++..|...+. ..+.++|..........+.+... .+...   ..+ +.+++     .++|+||-+|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            68999999999999999988773 35777887541100011111110 01110   011 12222     3689999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.+.............|+.....+.+.+.+..-  .++..|
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S  115 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence            754433334445677888888888888877653  344443

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.38  E-value=0.21  Score=49.02  Aligned_cols=115  Identities=14%  Similarity=0.039  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      ++++|.|+||+|+||..++..|+..+.  +|++.+.+.  ......++...  ..++..+.. -+|   ..++++     
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999988875  899999876  23333444321  123333221 122   222222     


Q ss_pred             --CCcEEEEcCCCCCC----CCCCHH---HHHHHHHHH----HHHHHHHHHHhCC-CcEEEEec
Q 016424          109 --GMDLVIIPAGVPRK----PGMTRD---DLFNINAGI----VRTLCEGIAKCCP-NATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k----~g~~r~---~l~~~N~~i----i~~ia~~I~~~~p-~a~iiv~t  158 (390)
                        ..|+||..+|....    +..+..   ..+..|..-    .+.+.+.+.+... .+.|++++
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence              48999999985321    122322   335556543    4444444444432 34666654

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.13  Score=48.13  Aligned_cols=113  Identities=19%  Similarity=0.334  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l  107 (390)
                      +.++|.|+||+|++|+.++..|++.+.  ++++.+.+. ......++..    ..+..+.. -+|   +.+.       +
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   87 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF   87 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            356899999999999999999998886  799999876 2222333321    11212111 112   2222       2


Q ss_pred             CCCcEEEEcCCCCCC-CC--CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK-PG--MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~g--~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      ...|+||..+|.... +.  .+..   ..+..|..-...+.+.+..+   ...+.++++|
T Consensus        88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  147 (255)
T PRK06841         88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLA  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            357999999886432 11  1222   23555655555555554433   2345566654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.37  E-value=0.14  Score=53.35  Aligned_cols=125  Identities=16%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..||.|||+ |.+|..++..|...+.  ++.++|..+.   ......|...    .++.+.++. . +...++|+||++.
T Consensus        16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~~-~-~~~~~~D~Vv~s~   86 (480)
T PRK01438         16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGPG-P-TLPEDTDLVVTSP   86 (480)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECCC-c-cccCCCCEEEECC
Confidence            458999999 9999999988888886  8999997651   1122223322    234443322 1 2356799999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHhCCCcEEEEec--CCCcccHHHHHHHHHHh
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLC--EGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia--~~I~~~~p~a~iiv~t--NPvd~~t~i~ae~~~~~  175 (390)
                      |++..... ....-..+++++.++-  ..+.+...++.+|-+|  |==.+++.+++.+++..
T Consensus        87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            98632211 1111234556654432  2222111234455554  44446677777777664

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.36  E-value=0.22  Score=54.57  Aligned_cols=116  Identities=21%  Similarity=0.248  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|...+.  +|++.|++.  ......++........+..+.. -+|   ..++++      
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~  491 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY  491 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999998886  899999986  2333334432111112222211 122   223333      


Q ss_pred             -CCcEEEEcCCCCCC-C--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRK-P--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k-~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                       +.|+||..+|.... +  ..+..+   .+..|+    .+.+...+.+.+....+.+++++
T Consensus       492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iS  552 (676)
T TIGR02632       492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIA  552 (676)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             68999999986432 2  112111   223333    23445555555544455555554

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.51  Score=44.24  Aligned_cols=116  Identities=14%  Similarity=0.151  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------  106 (390)
                      +.++|.|+||+|++|..++..|...+. ..|+++|.+.  ......++...  ...+..+.. -++.   .+.       
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEA   81 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999988774 2399999875  22233334221  223332221 1221   122       


Q ss_pred             hCCCcEEEEcCCCCCCCC---CCHHH---HHHHHHHHHHH----HHHHHHHhCCCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRKPG---MTRDD---LFNINAGIVRT----LCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g---~~r~~---l~~~N~~ii~~----ia~~I~~~~p~a~iiv~t  158 (390)
                      +.+.|+||..+|.+....   .+..+   .+..|+.-...    ..+.+.+....+.+++++
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  143 (260)
T PRK06198         82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIG  143 (260)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            236899999998754321   22322   24455543333    344444433345566665

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.35  E-value=0.1  Score=53.81  Aligned_cols=90  Identities=20%  Similarity=0.168  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....+|+|+|+ |.+|..++..+...+.  +++.+|+++ ....+.++     ...+.      +++++++++|+||.+.
T Consensus       200 l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~-----G~~~~------~~~e~v~~aDVVI~at  265 (413)
T cd00401         200 IAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME-----GYEVM------TMEEAVKEGDIFVTTT  265 (413)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc-----CCEEc------cHHHHHcCCCEEEECC
Confidence            45679999999 9999999999988886  788899987 22333322     11111      2357889999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHhCCCcEEEEecCC
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEG-IAKCCPNATVNLISNP  160 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~-I~~~~p~a~iiv~tNP  160 (390)
                      |.+.               +   +... +....+.+++++++.+
T Consensus       266 G~~~---------------~---i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         266 GNKD---------------I---ITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CCHH---------------H---HHHHHHhcCCCCcEEEEeCCC
Confidence            6431               1   2222 4445688999999875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06182 short chain dehydrogenase; Validated

Probab=95.34  E-value=0.16  Score=48.26  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEE-EeCCCChhhhhC-------CCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT-------GMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~-~~~t~dl~~al~-------dADi  112 (390)
                      +++|.|+||+|++|..++..|...+.  +|++.+.+...  ..++..... .-+.. .+...++.++++       +.|+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46899999999999999999988876  88998887511  112211110 01111 000112223333       7899


Q ss_pred             EEEcCCCCCC-C--CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRK-P--GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k-~--g~~---r~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||..+|.... +  ..+   ....+..|..-    .+.+.+.+.+.. .+.+++++
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~is  132 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINIS  132 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEc
Confidence            9999986422 1  112   22334555533    455555555443 34566665

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.34  E-value=0.063  Score=56.59  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc-cC-C-CeEEEEeCCCChhhhhCC---CcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DT-G-AVVRGFLGQPQLENALTG---MDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~-~~-~-~~v~~~~~t~dl~~al~d---ADi  112 (390)
                      ...++|++||- |.+|++++..|+..+.  +|+.||++..+  +.++.+. .. . ..+..   ..++.++++.   +|+
T Consensus         4 ~~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          4 AALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCCE
Confidence            45679999999 9999999999999887  99999997522  2223221 00 1 11222   2345565554   999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  160 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNP  160 (390)
                      ||++...               -+.+.++...+..+ .|+.++|..||=
T Consensus        76 Ii~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         76 VIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             EEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            9998521               12333443444444 477777777654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.32  E-value=0.15  Score=47.80  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      .+++|.|+||+|++|..++..+...+.  +|+++|.+.  ......++....  .++..+.+ -+|   +.+++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999988876  899999976  333444454321  12222221 122   22222      


Q ss_pred             -CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 016424          108 -TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  161 (390)
Q Consensus       108 -~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNPv  161 (390)
                       ...|+||..+|.... +  ..+..   ..+..|..-...+++.+.++   ...+.+++++...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence             245899999886332 1  12222   23556665555555444332   2346677776543

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.30  E-value=0.45  Score=43.71  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CCh---hhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQL---ENA------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a------  106 (390)
                      ++++|.|+||+|++|+.++..|.+++.  ++.+.....   ......++....  .+++.+.+. +|.   .++      
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~   80 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVE   80 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHH
Confidence            356899999999999999999988886  555544433   122333333221  233333221 121   122      


Q ss_pred             -hCCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424          107 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS  158 (390)
Q Consensus       107 -l~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t  158 (390)
                       +.+.|+||.++|.....   +++.   .+.+..|+.-...+.+.+    .+.. ...+++++
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~S  142 (249)
T PRK12825         81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNIS  142 (249)
T ss_pred             HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence             24679999998853221   2232   233555655555555554    3333 33455554

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.29  E-value=0.39  Score=44.39  Aligned_cols=114  Identities=21%  Similarity=0.346  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------  106 (390)
                      +.+++.|+||+|++|+.++..|...+.  .+.+.+.+.  +.....++.     .++..+.. -+|   ++++       
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD   77 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999988875  778887764  222222221     12222211 122   1111       


Q ss_pred             hCCCcEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424          107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~---g~~---r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP  160 (390)
                      +...|+||-.+|.....   ..+   -...+..|..-...+++.+.+.   .+.+.+++++..
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  140 (245)
T PRK12936         78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV  140 (245)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence            34589999998864321   111   1233455655544444444322   345566666643

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.29  E-value=0.064  Score=52.37  Aligned_cols=75  Identities=13%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +..++.|||| |+.+..+++.|...+ +.+|.+++++.  +...+.++...   ..+.......++.+.+.++|+||.+.
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G-~~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~~~~~~~~~DiVInaT  198 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLG-VTDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSGGLAIEKAAEVLVSTV  198 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhhhc---CcceeccchhhhhhcccCCCEEEECC
Confidence            4568999999 999999999998877 46899999875  33344444321   12222211123446678999999975


Q ss_pred             CC
Q 016424          118 GV  119 (390)
Q Consensus       118 g~  119 (390)
                      ..
T Consensus       199 p~  200 (282)
T TIGR01809       199 PA  200 (282)
T ss_pred             CC
Confidence            43

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.27  E-value=0.34  Score=44.75  Aligned_cols=103  Identities=21%  Similarity=0.296  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al~-----  108 (390)
                      +++|.|+||+|++|..++..++..+.  ++++. +.+.  ......++...  ...+..+... +|.   .+.++     
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK   80 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999998888775  67777 8865  22233333331  2234433221 222   22222     


Q ss_pred             --CCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHH
Q 016424          109 --GMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAK  147 (390)
Q Consensus       109 --dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~  147 (390)
                        ..|+||..+|.... +  ..+..   ..+..|..-...+.+.+..
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  127 (247)
T PRK05565         81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALP  127 (247)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              68999999886421 1  12222   3345566654444444443

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.27  E-value=0.072  Score=54.50  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=49.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|||+ |++|+.++..|+..+ +.+|.|+|-|.     +.                ..+..|.+.....++..+...
T Consensus        43 ~~VlviG~-GGlGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  120 (392)
T PRK07878         43 ARVLVIGA-GGLGSPTLLYLAAAG-VGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR  120 (392)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcC-CCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence            49999999 999999999999888 46899999874     11                011123333323445443211


Q ss_pred             ---CChhhhhCCCcEEEEcC
Q 016424          101 ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ---~dl~~al~dADiVIi~a  117 (390)
                         .+..+-++++|+||-+.
T Consensus       121 i~~~~~~~~~~~~D~Vvd~~  140 (392)
T PRK07878        121 LDPSNAVELFSQYDLILDGT  140 (392)
T ss_pred             CChhHHHHHHhcCCEEEECC
Confidence               22345689999999875

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.27  E-value=0.17  Score=52.69  Aligned_cols=124  Identities=19%  Similarity=0.228  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +.+||.|+|. |+.|.+ ++..|...+.  ++...|.+... ...+|...    .++.+.+. + .+.+.++|+||++.|
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEECCC
Confidence            4568999999 999999 6888988887  89999987632 22335432    23333222 3 366889999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~  175 (390)
                      +|...-+ ......++++++-+.-- +.+..++..+|-+  ||==.++|.+++++++..
T Consensus        76 i~~~~~~-~~~a~~~~i~i~~~~e~-~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         76 IPDDNPE-LVAARELGIPVVRRAEM-LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             CCCCCHH-HHHHHHCCCcEEeHHHH-HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence            9864221 11223445666544222 1122222234444  455557777777777665

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.27  E-value=0.055  Score=53.46  Aligned_cols=79  Identities=20%  Similarity=0.308  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-+.++|+|||.+|-+|.+++..|...+.  ++.+|+...                       .++.+..+.||+||.+.
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsav  210 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAV  210 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEec
Confidence            34568999999966999999999998876  888887541                       25678899999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  161 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPv  161 (390)
                      |.|..-..   ++                 ..|++++|-++ |++
T Consensus       211 g~~~~v~~---~~-----------------ik~GaiVIDvgin~~  235 (301)
T PRK14194        211 GRPRLIDA---DW-----------------LKPGAVVIDVGINRI  235 (301)
T ss_pred             CChhcccH---hh-----------------ccCCcEEEEeccccc
Confidence            87642111   11                 46889888886 553

>TIGR02415 23BDH acetoin reductases

Probab=95.26  E-value=0.44  Score=44.45  Aligned_cols=112  Identities=17%  Similarity=0.282  Sum_probs=64.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhh-------hCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENA-------LTG  109 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a-------l~d  109 (390)
                      ++.|+||+|++|..++..|...+.  ++++++.+.  ......++.+..  .++..+... +|.   .++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            688999999999999999988886  899999875  233334444322  233332211 221   122       234


Q ss_pred             CcEEEEcCCCCCC-C--CCCHHH---HHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRK-P--GMTRDD---LFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k-~--g~~r~~---l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .|+||..+|.... +  +.+..+   .+..|..    +++.+.+.+.+...++.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            6999999886321 1  223332   3445543    3344455555545456666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06046 alanine dehydrogenase; Validated

Probab=95.26  E-value=0.081  Score=52.73  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..+|+|||+ |..|...+..+...+.+.++.+||++.  ....+.++.+. ....+..+   +++++++. +|+|+++.
T Consensus       129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aT  201 (326)
T PRK06046        129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTT  201 (326)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEec
Confidence            469999999 999999888777666789999999987  34455555432 12345543   46778886 99999975

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.7  Score=43.96  Aligned_cols=115  Identities=14%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------C
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------T  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------~  108 (390)
                      .+.+.|.||+|++|..++..|+..+.  +|++.|.+.  +.....++.... ..++..+.. -+|   .++.+      -
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            34788999999999999999998886  899999876  333444443321 123333221 122   22222      2


Q ss_pred             CCcEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..|++|..+|.+...   ..+..   ..+..|    ....+.+.+.+.+.. .+.||++|-
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS  144 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS  144 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            579999999875421   12222   223444    344556666665433 466766654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.25  E-value=0.082  Score=54.51  Aligned_cols=104  Identities=18%  Similarity=0.219  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+..+|+|||+ |.+|..++..|...+ +.++.++|.+..  ...+.++..     .  ... ..++.+++.++|+||.+
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G-~~~V~v~~rs~~ra~~la~~~g~-----~--~i~-~~~l~~~l~~aDvVi~a  247 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKG-VGKILIANRTYERAEDLAKELGG-----E--AVK-FEDLEEYLAEADIVISS  247 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHcCC-----e--Eee-HHHHHHHHhhCCEEEEC
Confidence            45579999999 999999999888766 358999999752  223333221     1  111 23677889999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  165 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t  165 (390)
                      .|.|..- .+.            +..+...... ...+++-+++|-|+=.
T Consensus       248 T~s~~~i-i~~------------e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       248 TGAPHPI-VSK------------EDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             CCCCCce-EcH------------HHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            7665421 111            1111111111 2458888899988763

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.25  E-value=0.14  Score=47.16  Aligned_cols=114  Identities=17%  Similarity=0.283  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      +++|.|+||+|++|..++..+...+.  ++.+++.+.  ......++....  .++..+.+ -+|   +.+++       
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAF   80 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36899999999999999999988876  789999876  222333343221  23333221 111   22222       


Q ss_pred             CCCcEEEEcCCCCC-CC--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPR-KP--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~-k~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      ...|.||..+|.-. .+  ..+..   ..+..|..-...+.+.+..+   .....+++++
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s  140 (246)
T PRK05653         81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS  140 (246)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            34599999887421 11  12222   23555666555555555332   2234555555

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.25  E-value=0.055  Score=48.97  Aligned_cols=58  Identities=29%  Similarity=0.472  Sum_probs=46.2

Q ss_pred             CCCCCEEEEEcCCCCc-HHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGI-GQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~v-G~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .-+..||.|||+ |.+ |..++..|...+.  ++.+.+.+.                       .++.+.+++||+||.+
T Consensus        41 ~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsa   94 (168)
T cd01080          41 DLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVA   94 (168)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEc
Confidence            356679999999 874 8889998888775  688888641                       3567889999999999


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      .+.|.
T Consensus        95 t~~~~   99 (168)
T cd01080          95 VGKPG   99 (168)
T ss_pred             CCCCc
Confidence            88774

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.24  E-value=0.22  Score=46.30  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +.+||.|||| |.+|...+..|...+.  ++++++.+.... ..++.+.   ..+......-+ ++.+.++|+||.+.+.
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~---~~i~~~~~~~~-~~~l~~adlViaaT~d   80 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEE---GKIRWKQKEFE-PSDIVDAFLVIAATND   80 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhC---CCEEEEecCCC-hhhcCCceEEEEcCCC
Confidence            4569999999 9999999988888774  889998643222 2233322   12332221112 4668999999887644


Q ss_pred             C
Q 016424          120 P  120 (390)
Q Consensus       120 p  120 (390)
                      +
T Consensus        81 ~   81 (202)
T PRK06718         81 P   81 (202)
T ss_pred             H
Confidence            4

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.24  E-value=0.34  Score=47.12  Aligned_cols=117  Identities=24%  Similarity=0.183  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQL---ENA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------  106 (390)
                      +.++|.|+||+|++|..++..|+..+.  ++++.+.+..  .....++........+..+.. -+|.   .++       
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            456899999999999999999998876  8899998762  222334432111123333321 1221   111       


Q ss_pred             hCCCcEEEEcCCCCCCCC-CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          107 LTGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g-~~---r~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +...|+||..+|....+. .+   -...+..|..-    .+.+.+.+.+. ..+.|+++|-
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS  152 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSS  152 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence            235799999998632221 11   12234455443    55555555443 3456666653

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.13  Score=48.98  Aligned_cols=112  Identities=13%  Similarity=0.002  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------hCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTGM  110 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l~dA  110 (390)
                      ++|.|+||+|++|+.++..|+..+.  .+.+.+.+..  ...++.... ..++..+.+ -+|.   .++       +...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999988876  7888887651  111221111 112332221 1222   122       2457


Q ss_pred             cEEEEcCCCCCCCC-C--CH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          111 DLVIIPAGVPRKPG-M--TR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       111 DiVIi~ag~p~k~g-~--~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      |+||..+|...... +  +.   ...+..|..-...+.+.+..+   ...+.++++|
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~s  134 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVS  134 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence            99999998754321 1  22   234556766666666665332   2334555554

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=95.22  E-value=0.24  Score=47.44  Aligned_cols=115  Identities=14%  Similarity=0.116  Sum_probs=75.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC---CCeEEEEeC----CCChhhhhCCCcE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~---~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      +-+.|.|||+++|...+..|...+.  .++|.....  +..++.++.+...   ..+|+-...    -..+.+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            3466779999999999999999998  999999987  5777777774110   012221100    0124456778999


Q ss_pred             EEEcCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          113 VIIPAGVPRKPGM------TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g~------~r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      +|..||..+-...      +...++..|+.-+......+--.   ...+-|||++
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~  139 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLG  139 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEec
Confidence            9999997553211      23456778877666655554332   2356788776

>PRK06128 oxidoreductase; Provisional

Probab=95.21  E-value=0.45  Score=46.17  Aligned_cols=115  Identities=23%  Similarity=0.283  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeC-CCC---hhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQ---LEN-------  105 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~-------  105 (390)
                      .++|.|+||+|++|..++..|+..+.  ++++.+.+.    .......+....  .++..+.+ -+|   ..+       
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998876  777776643    122233333221  22322221 112   112       


Q ss_pred             hhCCCcEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          106 ALTGMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       106 al~dADiVIi~ag~p~--k~--g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                      .+...|++|..+|...  .+  ..+.   ...+..|+.-...+++.+..+- +.+.+++++-
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            2346799999998642  22  1222   2356677776666666666553 3556666653

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.20  E-value=0.49  Score=44.38  Aligned_cols=114  Identities=19%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhh-------hh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LEN-------AL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~-------al  107 (390)
                      .+.+.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.+..  .++..+.. -+|   ..+       .+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999998886  899999876  233444444322  23333221 122   112       23


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHH----HHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia----~~I~~~~p~a~iiv~t  158 (390)
                      ...|++|..+|.....   ..+..   ..+..|+.-...+.    +.+.+....+.+++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999998864321   12222   23445554433333    4443333345566554

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.19  E-value=0.1  Score=53.95  Aligned_cols=105  Identities=18%  Similarity=0.267  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ....+|+|||+ |.+|..++..+...+ +.+++++|.+.  +...+.++.     ..+..   ..++.+++.++|+||.+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~a  249 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKG-VRKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISS  249 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEEC
Confidence            45579999999 999999998887665 45899999975  222333322     12221   13567889999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEecCCCcccH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIA-KCCPNATVNLISNPVNSTV  165 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~-~~~p~a~iiv~tNPvd~~t  165 (390)
                      .|.|..- .+..        .+..   .+. +.....+++-+++|-|+=.
T Consensus       250 T~s~~~~-i~~~--------~l~~---~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        250 TGAPHPI-IGKG--------MVER---ALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             CCCCCcE-EcHH--------HHHH---HHhhccCCCeEEEEeCCCCCCcc
Confidence            7765321 1111        1111   111 1134578888999988753

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.19  E-value=0.11  Score=53.86  Aligned_cols=124  Identities=20%  Similarity=0.243  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH---HHHHHhcccCCCeEEEEeCCCChh-----hhhCCCcEEE
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLE-----NALTGMDLVI  114 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g---~a~DL~~~~~~~~v~~~~~t~dl~-----~al~dADiVI  114 (390)
                      ||.|||+ |..|.+.+..|...+.  ++.++|.+....   ....|...    .++.+.+. +..     ..+.+.|.||
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~g~-~~~~~~~~~~~~~~d~vv   73 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE----GITVKLGK-PLELESFQPWLDQPDLVV   73 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc----CCEEEECC-ccchhhhhHHhhcCCEEE
Confidence            7999999 9999999999988887  899999876221   11224332    23333332 211     3578899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHhC
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG  176 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~s  176 (390)
                      .+.|+|...- ........+++++.++........ +..+|-+  ||==.+++.+++.++...+
T Consensus        74 ~s~gi~~~~~-~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         74 VSPGIPWDHP-TLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             ECCCCCCCCH-HHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            9999885321 111223456777777655433322 2334444  4555577788888886653

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.19  E-value=0.082  Score=53.92  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ....++|||+ |..+...+..+.. .+.+.+|.+||.+.  +...+.++.+.... ..+...   ++.++|+++||+|+.
T Consensus       154 da~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvt  229 (379)
T PRK06199        154 DSKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTY  229 (379)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEE
Confidence            3469999999 9888887776665 44589999999987  45666677653211 245553   467899999999997


Q ss_pred             cC
Q 016424          116 PA  117 (390)
Q Consensus       116 ~a  117 (390)
                      +.
T Consensus       230 aT  231 (379)
T PRK06199        230 CN  231 (379)
T ss_pred             cc
Confidence            54

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.18  E-value=0.3  Score=46.35  Aligned_cols=118  Identities=18%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CC---Chhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~---dl~~al------  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.. -+   ++.+++      
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE   83 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999988876  799999875  233333443221  12222211 11   222222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 016424          108 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV  161 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~tNPv  161 (390)
                       ...|+||..+|.....   ..+..   ..+..|..-...+.+.....  .+++.+++++...
T Consensus        84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence             3569999988753321   12222   23445554444444444332  1346777776543

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.18  E-value=0.3  Score=45.96  Aligned_cols=114  Identities=22%  Similarity=0.299  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~  108 (390)
                      .+++.|+||+|++|+.++..|...+.  ++++.+.+. ......++...  ..++..+.+ -++   +.+++       .
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999988876  799999876 22233333221  123333221 122   22222       3


Q ss_pred             CCcEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k-~--g~~---r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      .-|+||..+|.... +  ..+   ....+..|+.-...+.+.+..+   ...+.+++++
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~is  140 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMS  140 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            56999999886321 1  111   1223555655555455544332   2344565554

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.17  E-value=0.098  Score=50.90  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .||+|+|+ |+||+.++..|+..+ +.+|.|+|-|.
T Consensus        31 s~VlVvG~-GGVGs~vae~Lar~G-Vg~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGI-GGVGSWAAEALARTG-IGAITLIDMDD   64 (268)
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcC-CCEEEEEeCCE
Confidence            49999999 999999999999988 36899999874

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.17  E-value=0.084  Score=51.77  Aligned_cols=96  Identities=18%  Similarity=0.276  Sum_probs=64.0

Q ss_pred             CCCccchhhhhhhhhcccCCCCCCEEEEEcCCCC-cHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE
Q 016424           19 YPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF   97 (390)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~-vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~   97 (390)
                      +-||--.++.+....... ..+.++|+|||+ |+ +|.+++++|...+.  ++.+++..                     
T Consensus       138 ~~p~T~~gii~~L~~~~i-~l~Gk~vvViG~-gg~vGkpia~~L~~~ga--tVtv~~~~---------------------  192 (283)
T PRK14192        138 YGSATPAGIMRLLKAYNI-ELAGKHAVVVGR-SAILGKPMAMMLLNANA--TVTICHSR---------------------  192 (283)
T ss_pred             ccCCcHHHHHHHHHHcCC-CCCCCEEEEECC-cHHHHHHHHHHHHhCCC--EEEEEeCC---------------------
Confidence            445555566552222221 455679999999 66 99999999988775  78887741                     


Q ss_pred             eCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCC
Q 016424           98 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPV  161 (390)
Q Consensus        98 ~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPv  161 (390)
                        +.++.+.+++||+||.+.|.|.   .-..                 +...|+++++-+ .||.
T Consensus       193 --t~~L~~~~~~aDIvI~AtG~~~---~v~~-----------------~~lk~gavViDvg~n~~  235 (283)
T PRK14192        193 --TQNLPELVKQADIIVGAVGKPE---LIKK-----------------DWIKQGAVVVDAGFHPR  235 (283)
T ss_pred             --chhHHHHhccCCEEEEccCCCC---cCCH-----------------HHcCCCCEEEEEEEeec
Confidence              2356677899999999987543   1000                 113678888777 4885

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.16  E-value=1.1  Score=42.85  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---------HHHHHHHhcccCCCeEEEEeC----CCChhhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG----QPQLENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---------~g~a~DL~~~~~~~~v~~~~~----t~dl~~a  106 (390)
                      +++++.|+||+|++|..++..|+..+.  +|+++|.+..         ...+.++....  .++..+.+    ..++.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~   80 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA   80 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence            345899999999999999999998886  8999998641         12233333221  22322211    1122222


Q ss_pred             hC-------CCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          107 LT-------GMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       107 l~-------dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      ++       ..|+||..+|.... +  ..+..   ..+..|+.-...+.+.+..+   ...+.+++++-
T Consensus        81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss  149 (273)
T PRK08278         81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSP  149 (273)
T ss_pred             HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            32       67999999986332 1  22332   23445554444444444322   23566766664

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.21  Score=46.85  Aligned_cols=110  Identities=13%  Similarity=0.145  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALT-------  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~-------  108 (390)
                      +.+++.|+||+|++|..++..|+..+.  ++++.|.+...    ...    ...+..+... +   +.+++++       
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   74 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD----GRPAEFHAADVRDPDQVAALVDAIVERHG   74 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999988876  89999987522    111    1122222111 1   2233333       


Q ss_pred             CCcEEEEcCCCCC-CCC--CC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPR-KPG--MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~-k~g--~~---r~~l~~~N~~ii~~ia~~I~~----~~p~a~iiv~tN  159 (390)
                      ..|+||..+|... .+.  .+   ....+..|+.-...+.+.+..    ....+.+++++.
T Consensus        75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  135 (252)
T PRK07856         75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS  135 (252)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            4599999988532 221  11   123455565555555554433    223466766653

>PRK14851 hypothetical protein; Provisional

Probab=95.14  E-value=0.057  Score=59.05  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=51.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h--------------HH--HHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T--------------PG--VTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~--------------~g--~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||.|+|+ |++|+.++..|+..+. .+|.|+|-|.     +              +.  .+..+.++....+|+.+..
T Consensus        43 ~~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~  120 (679)
T PRK14851         43 EAKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA  120 (679)
T ss_pred             cCeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence            359999999 9999999999999985 7899999874     0              11  1222333333456666532


Q ss_pred             ---CCChhhhhCCCcEEEEcC
Q 016424          100 ---QPQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 ---t~dl~~al~dADiVIi~a  117 (390)
                         ..+..+-++++|+||-+.
T Consensus       121 ~i~~~n~~~~l~~~DvVid~~  141 (679)
T PRK14851        121 GINADNMDAFLDGVDVVLDGL  141 (679)
T ss_pred             CCChHHHHHHHhCCCEEEECC
Confidence               234456689999988654

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.084  Score=50.04  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .++|.|+||+|++|..++..|...+.  +|++.+.+.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~   38 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP   38 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            35799999999999999999988875  799999875

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.13  E-value=0.58  Score=43.24  Aligned_cols=103  Identities=20%  Similarity=0.343  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc------hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh--
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL--  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~------~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al--  107 (390)
                      ++++|.|+||+|++|+.++..|+..+.  ++++++...      ......++...  ..++..+.+. +|   +++++  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            357999999999999999999998876  788887643      11122223221  1233333221 22   22222  


Q ss_pred             -----CCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHH
Q 016424          108 -----TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIA  146 (390)
Q Consensus       108 -----~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~  146 (390)
                           ...|+||..+|.... +  ..+.   ...+..|..-...+++.+.
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  130 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL  130 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence                 358999999986542 1  1222   2345667777777776665

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=95.13  E-value=0.065  Score=53.63  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -.-++|||+ |..+..-+..+..--.+.+|.+||.++  +...+.++..... ..+..   .++.++|+++||+|+.+-
T Consensus       130 a~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v~a---~~s~~~av~~aDiIvt~T  203 (330)
T COG2423         130 ASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAVGA---ADSAEEAVEGADIVVTAT  203 (330)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-cccee---ccCHHHHhhcCCEEEEec
Confidence            357899999 988777777776655588999999998  4666777766432 33443   357789999999999864

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.25  Score=46.30  Aligned_cols=112  Identities=21%  Similarity=0.195  Sum_probs=62.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-------  108 (390)
                      +++.|+||+|++|..++..|+..+.  +++++|.+.  ......++.+    ..+..+.. -+|   +..++.       
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGD----ARFVPVACDLTDAASLAAALANAAAERG   76 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999988775  899999875  2223333421    12222211 122   222332       


Q ss_pred             CCcEEEEcCCCCCCCC---CCHHH---HHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKPG---MTRDD---LFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~g---~~r~~---l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      +.|+||..+|......   .+..+   .+..|......+.+.+...   ...+.+++++.
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  136 (257)
T PRK07074         77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS  136 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence            4799999988643221   12221   2334554444444444322   23455665654

>TIGR01746 Thioester-redct thioester reductase domain

Probab=95.12  E-value=0.19  Score=49.15  Aligned_cols=114  Identities=13%  Similarity=0.084  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-----HHHHHhcc-----cCC-CeEEEEeCC----------C
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHM-----DTG-AVVRGFLGQ----------P  101 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-----~a~DL~~~-----~~~-~~v~~~~~t----------~  101 (390)
                      +|.|+||+|++|+.++..|...+...+|++...+....     ....+...     ... .+++...+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            57899999999999999998887545788888765211     11111111     000 345554432          1


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++.+..+++|+||-.++... ......++...|+.-...+.+.+.+..... ++.+|
T Consensus        81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS  135 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS  135 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence            23445678999999887542 122344556678877788887777665443 34433

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.10  E-value=0.071  Score=50.44  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +++++.|+||+|++|..++..|+..+.  +|++.|.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999998886  899999875

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.39  Score=47.13  Aligned_cols=79  Identities=22%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~a  106 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|++.+.+.  ......++........+..+.. -+|+.          +.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999998885  899999876  2333444533211123333221 12221          11


Q ss_pred             hCCCcEEEEcCCCC
Q 016424          107 LTGMDLVIIPAGVP  120 (390)
Q Consensus       107 l~dADiVIi~ag~p  120 (390)
                      ....|++|..+|..
T Consensus        91 ~~~iD~li~nAG~~  104 (313)
T PRK05854         91 GRPIHLLINNAGVM  104 (313)
T ss_pred             CCCccEEEECCccc
Confidence            23579999999864

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.09  E-value=0.13  Score=49.89  Aligned_cols=89  Identities=22%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEE-EEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL-~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +++||+|||. |.+|+.++..+... +-. +| .++|.+...  +.++....  .....   .+++++.+.++|+|++++
T Consensus         5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~--a~~~a~~~--g~~~~---~~~~eell~~~D~Vvi~t   75 (271)
T PRK13302          5 PELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQR--HADFIWGL--RRPPP---VVPLDQLATHADIVVEAA   75 (271)
T ss_pred             CeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHH--HHHHHHhc--CCCcc---cCCHHHHhcCCCEEEECC
Confidence            3579999999 99999999888764 322 44 488987522  22232211  11111   235677789999999997


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT  153 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~  153 (390)
                      +..                ...+++..+-+.+.+.+
T Consensus        76 p~~----------------~h~e~~~~aL~aGk~Vi   95 (271)
T PRK13302         76 PAS----------------VLRAIVEPVLAAGKKAI   95 (271)
T ss_pred             CcH----------------HHHHHHHHHHHcCCcEE
Confidence            422                23566666666655443

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.09  E-value=0.038  Score=51.51  Aligned_cols=73  Identities=16%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEe--CCCChhhhhCCCcEEEEcCCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~--~t~dl~~al~dADiVIi~ag~p  120 (390)
                      |+|+||+|.+|+.++..|...+.  ++..+=.+.....+..|.+..  ..+....  ...++.++|+|+|.|++..+..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            78999999999999998888664  566665554333444455432  2222111  1135677999999999987644

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02712 arogenate dehydrogenase

Probab=95.08  E-value=0.1  Score=57.11  Aligned_cols=67  Identities=21%  Similarity=0.324  Sum_probs=47.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC-CCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-dADiVIi~  116 (390)
                      ..+++||+|||. |.+|..++..+...+.  +|+.||.+.....+.++     .  +..+   +++.+.+. ++|+||++
T Consensus       366 ~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~-----G--v~~~---~~~~el~~~~aDvVILa  432 (667)
T PLN02712        366 DGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL-----G--VSYF---SDADDLCEEHPEVILLC  432 (667)
T ss_pred             CCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc-----C--CeEe---CCHHHHHhcCCCEEEEC
Confidence            346689999998 9999999999988775  89999987521122211     1  2222   35666565 59999998


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      .
T Consensus       433 v  433 (667)
T PLN02712        433 T  433 (667)
T ss_pred             C
Confidence            6

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.65  Score=43.48  Aligned_cols=114  Identities=18%  Similarity=0.197  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .+++.|+||+|++|..++..|+..+.  ++++.+.+.  ......++.+..  .++..+.. -+|   .++++       
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999998886  899999876  333444554332  23333221 112   11222       


Q ss_pred             CCCcEEEEcCCCC--CCC--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVP--RKP--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p--~k~--g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|++|..+|..  ..+  ..+..   ..+..|..    ..+.+.+.+.+. ..+.+++++.
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS  143 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTST  143 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence            3679999999863  222  22222   33556654    334444444433 3455665543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.06  E-value=0.1  Score=51.00  Aligned_cols=67  Identities=28%  Similarity=0.386  Sum_probs=43.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .++|+|+|. |.+|..++..|...++  .+..++.+.   ....+.++.=...  ..     .....++.++||+||++.
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~--~~-----~~~~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDE--LT-----VAGLAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCcccc--cc-----cchhhhhcccCCEEEEec
Confidence            579999998 9999999999999998  444555554   1112222221110  00     112247789999999985

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.05  E-value=0.18  Score=47.06  Aligned_cols=112  Identities=23%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccC-CCeEEEEeCCCChhhhhCC----CcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTG----MDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~d----ADiVI  114 (390)
                      .+|.|+||+|++|..++..|...+.  ++++.|.+..  ........+... ..++.   ...+.+++++.    -|.+|
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~d~~i   76 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDELHTQSANIFTLAFDVT---DHPGTKAALSQLPFIPELWI   76 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhcCCCeEEEeeCC---CHHHHHHHHHhcccCCCEEE
Confidence            5789999999999999999988876  8999998762  222111111100 01111   01223333333    47777


Q ss_pred             EcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424          115 IPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t  158 (390)
                      ..+|.... +  ..+..   ..+..|..-...+.+.+..+ .+...+++++
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~is  127 (240)
T PRK06101         77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVG  127 (240)
T ss_pred             EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEe
Confidence            77764321 1  12222   34667776666666666554 2345566554

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.04  E-value=0.74  Score=43.42  Aligned_cols=78  Identities=17%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~al  107 (390)
                      .+.+.|+||+|++|..++..+...+.  ++++.+.+.  ......++.......++..+.. -+|.+          +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            45789999999999999999998886  799999976  3333444443221123333221 12321          122


Q ss_pred             CCCcEEEEcCCCC
Q 016424          108 TGMDLVIIPAGVP  120 (390)
Q Consensus       108 ~dADiVIi~ag~p  120 (390)
                      ...|++|..+|..
T Consensus        86 g~id~li~~Ag~~   98 (265)
T PRK07062         86 GGVDMLVNNAGQG   98 (265)
T ss_pred             CCCCEEEECCCCC
Confidence            4579999999864

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.04  E-value=0.2  Score=52.64  Aligned_cols=129  Identities=19%  Similarity=0.174  Sum_probs=74.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      +.||.|+|. |+.|.+++..|...+.  ++..+|.+.......+|....  ..++.+.+..+ .+.+.++|+||.+.|+|
T Consensus         7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~--~~~~~~~g~~~-~~~~~~~d~vv~sp~I~   80 (498)
T PRK02006          7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAEL--PDAEFVGGPFD-PALLDGVDLVALSPGLS   80 (498)
T ss_pred             CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhc--CCcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence            458999999 9999998888888886  899999865321222354432  23333333223 46788999999999988


Q ss_pred             CCCCCCHHHH---HHHHHHHHHH--H-HHHHHHhC-C--CcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424          121 RKPGMTRDDL---FNINAGIVRT--L-CEGIAKCC-P--NATVNLI--SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       121 ~k~g~~r~~l---~~~N~~ii~~--i-a~~I~~~~-p--~a~iiv~--tNPvd~~t~i~ae~~~~~  175 (390)
                      ...-..+-.+   -..|++++.+  + ...++..+ +  ...+|-+  ||==.+++.+++.+++..
T Consensus        81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~  146 (498)
T PRK02006         81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERA  146 (498)
T ss_pred             CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            6421111111   1234444422  1 12222211 1  1123334  555557778887877665

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.65  Score=43.76  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCC-CcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhh-------
Q 016424           41 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENA-------  106 (390)
Q Consensus        41 ~~KI~VIGa~G-~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~a-------  106 (390)
                      .+++.|+||+| ++|..++..++..+.  +|++.|.+.  ......++.......++..+... ++   ..++       
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46899999976 799999999998886  689999876  23333344331111234333211 12   1122       


Q ss_pred             hCCCcEEEEcCCCC
Q 016424          107 LTGMDLVIIPAGVP  120 (390)
Q Consensus       107 l~dADiVIi~ag~p  120 (390)
                      +...|++|..+|..
T Consensus        95 ~g~id~li~~ag~~  108 (262)
T PRK07831         95 LGRLDVLVNNAGLG  108 (262)
T ss_pred             cCCCCEEEECCCCC
Confidence            23579999999864

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.02  E-value=0.81  Score=42.92  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l  107 (390)
                      .++|.|+||+|++|..++..|...+.  ++++.|.+.  ......++.+..  .++..+.. -+|.   .++       +
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   86 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL   86 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            56999999999999999999998875  788888875  233344454322  12222211 1221   122       2


Q ss_pred             CCCcEEEEcCCCCCC--CCCCHHH---HHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK--PGMTRDD---LFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k--~g~~r~~---l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      ...|+||..+|....  ...+..+   .+..|+.-...+.+.+..+   ...+.+++++
T Consensus        87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is  145 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTIT  145 (255)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            356999999885321  1233333   2556665555555554322   2334555554

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.02  E-value=0.12  Score=49.52  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCC---------CcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~---------~~eL~L~Di~~   77 (390)
                      .++.||.|||+ |++|+.++..|+..+.         ..+|+|+|-|.
T Consensus         9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            35569999999 9999999999987541         12999999874

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.01  E-value=0.042  Score=55.37  Aligned_cols=74  Identities=23%  Similarity=0.418  Sum_probs=49.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +.+.+||+||||+|.+|+.+..+|...+  .+.+|.++......|....+..    ..+.+..  .| .++++++|+|+.
T Consensus         2 ~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~~--~~-~~~~~~~Divf~   74 (347)
T PRK06728          2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQE--AK-INSFEGVDIAFF   74 (347)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEEe--CC-HHHhcCCCEEEE
Confidence            3456899999999999999999998655  3567888877652232222221    2344332  23 356799999999


Q ss_pred             cCC
Q 016424          116 PAG  118 (390)
Q Consensus       116 ~ag  118 (390)
                      +.+
T Consensus        75 a~~   77 (347)
T PRK06728         75 SAG   77 (347)
T ss_pred             CCC
Confidence            764

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.11  Score=49.40  Aligned_cols=112  Identities=20%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCC-------hhhhhCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQ-------LENALTGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~d-------l~~al~dA  110 (390)
                      +++|.|+||+|++|..++..|...+.  .+++.+.+.  ......++.+... ..++.-   .++       ..+.+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~~~i   79 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVTD---PASFAAFLDAVEADLGPI   79 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCCC---HHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999988876  789999876  2223333331110 011110   011       11223568


Q ss_pred             cEEEEcCCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          111 DLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       111 DiVIi~ag~p~k~g---~~r---~~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |++|..+|......   .+.   ...+..|+.-.    +.+.+.+.+. ..+.|+++|
T Consensus        80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~is  136 (273)
T PRK07825         80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVA  136 (273)
T ss_pred             CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEc
Confidence            99999998643211   121   23345565433    3344444333 345666665

>PRK13529 malate dehydrogenase; Provisional

Probab=94.99  E-value=0.38  Score=51.23  Aligned_cols=125  Identities=17%  Similarity=0.260  Sum_probs=80.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCCC-----cEEEEEeCCc--hHH------HHHHHhcccCCCeEEEE---eCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TPG------VTADISHMDTGAVVRGF---LGQ  100 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~~-----~eL~L~Di~~--~~g------~a~DL~~~~~~~~v~~~---~~t  100 (390)
                      ..||++.|| |..|..++.+|..    .++-     ..++++|.+.  ..+      ....+.+-.  ..+...   ...
T Consensus       295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~~  371 (563)
T PRK13529        295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGDV  371 (563)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccCC
Confidence            479999999 9999999987764    4542     5899999986  111      111222211  111100   112


Q ss_pred             CChhhhhCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhC
Q 016424          101 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAG  176 (390)
Q Consensus       101 ~dl~~al~dA--DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s  176 (390)
                      .++.++++++  |++|=+.+.|--              +-+++.+.|.++|++.+|+-.|||..  -.++  .++ .+.+
T Consensus       372 ~~L~e~v~~~kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tp--e~a-~~~T  434 (563)
T PRK13529        372 ISLLEVVRNVKPTVLIGVSGQPGA--------------FTEEIVKEMAAHCERPIIFPLSNPTSRAEATP--EDL-IAWT  434 (563)
T ss_pred             CCHHHHHhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCcCCCcccCH--HHH-HHhh
Confidence            5799999999  999877655421              23478888999999999999999987  4443  222 2322


Q ss_pred             CCCCCceeecc
Q 016424          177 TYDPKKLLGVT  187 (390)
Q Consensus       177 ~~p~~kviG~t  187 (390)
                        +-+.+|++.
T Consensus       435 --~Grai~AtG  443 (563)
T PRK13529        435 --DGRALVATG  443 (563)
T ss_pred             --cCCEEEEEC
Confidence              125677773

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=94.99  E-value=0.76  Score=43.10  Aligned_cols=75  Identities=23%  Similarity=0.269  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~  108 (390)
                      .+++.|.||+|++|..++..|...+.  +|+++|.++ ......++....  .++..+.. -+|   ..++       +.
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999998886  899999875 223333343221  22222211 122   1222       23


Q ss_pred             CCcEEEEcCCC
Q 016424          109 GMDLVIIPAGV  119 (390)
Q Consensus       109 dADiVIi~ag~  119 (390)
                      ..|++|..+|.
T Consensus        84 ~id~lv~nAg~   94 (260)
T PRK12823         84 RIDVLINNVGG   94 (260)
T ss_pred             CCeEEEECCcc
Confidence            67999999875

>PLN00203 glutamyl-tRNA reductase

Probab=94.98  E-value=0.14  Score=54.27  Aligned_cols=74  Identities=12%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...||+|||+ |.+|..++..|...+ +.+|++++.+.  ....+..+.    ...+.... .+++.+++.+||+||.+.
T Consensus       265 ~~kkVlVIGA-G~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~----g~~i~~~~-~~dl~~al~~aDVVIsAT  337 (519)
T PLN00203        265 ASARVLVIGA-GKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP----DVEIIYKP-LDEMLACAAEADVVFTST  337 (519)
T ss_pred             CCCEEEEEeC-HHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC----CCceEeec-HhhHHHHHhcCCEEEEcc
Confidence            3579999999 999999998888766 46799999875  222333222    12232221 246678899999999876


Q ss_pred             CCC
Q 016424          118 GVP  120 (390)
Q Consensus       118 g~p  120 (390)
                      +.+
T Consensus       338 ~s~  340 (519)
T PLN00203        338 SSE  340 (519)
T ss_pred             CCC
Confidence            544

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.95  E-value=0.074  Score=52.19  Aligned_cols=59  Identities=17%  Similarity=0.353  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-+..+|+|||+++-+|.+++.+|...+.  ++..++..                       |.++.+.+++||+||.+.
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAv  209 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAV  209 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECC
Confidence            34567999999933499999999987764  66666532                       236778899999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus       210 g~p~  213 (286)
T PRK14175        210 GKPG  213 (286)
T ss_pred             CCCc
Confidence            8874

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=94.95  E-value=0.21  Score=49.78  Aligned_cols=66  Identities=15%  Similarity=0.199  Sum_probs=45.1

Q ss_pred             CEEEEEcCCCCc--------------------HHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEe
Q 016424           42 FKVAILGAAGGI--------------------GQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL   98 (390)
Q Consensus        42 ~KI~VIGa~G~v--------------------G~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~   98 (390)
                      |||+|-|| |+-                    |+++|..|...++  +|++||++..   ...+..+.+..    +..  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence            67888887 642                    6778888887777  9999998752   22333454432    122  


Q ss_pred             CCCChhhhhCCCcEEEEcC
Q 016424           99 GQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        99 ~t~dl~~al~dADiVIi~a  117 (390)
                       .++..++.++||+||++-
T Consensus        72 -AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             -cCCHHHHHhCCCEEEEec
Confidence             235679999999999985

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.92  E-value=0.11  Score=55.23  Aligned_cols=93  Identities=20%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..++|+|||. |.+|+.++..+...+.  +++.||.......+.++       .++.   .+++.+.+++||+|++....
T Consensus       137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~lPl  203 (525)
T TIGR01327       137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELLARADFITVHTPL  203 (525)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHHhhCCEEEEccCC
Confidence            4579999999 9999999999887776  89999985322222222       1222   23688999999999998532


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .  +         .+..++-  .+.+....|++++|+++
T Consensus       204 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a  229 (525)
T TIGR01327       204 T--P---------ETRGLIG--AEELAKMKKGVIIVNCA  229 (525)
T ss_pred             C--h---------hhccCcC--HHHHhcCCCCeEEEEcC
Confidence            1  1         1111221  24455556889999886

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08589 short chain dehydrogenase; Validated

Probab=94.92  E-value=0.79  Score=43.68  Aligned_cols=113  Identities=16%  Similarity=0.239  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~  108 (390)
                      .+++.|+||+|++|..++..|+..+.  ++++.|.++ ......++.+..  .++..+.. -+|   ..++       +.
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999998886  899999875 333444554321  12222211 112   1122       23


Q ss_pred             CCcEEEEcCCCCCCCC----CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKPG----MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~g----~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..|++|..+|.....+    .+..   ..+..|+.    +.+.+.+.+.+.  ++.|++++-
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS  141 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS  141 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence            4799999998753221    1222   23344544    334444444332  367777764

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.90  E-value=0.1  Score=52.08  Aligned_cols=73  Identities=26%  Similarity=0.373  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCchHHHH-HHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~~~g~a-~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ++||+|+||+|.||+.+...|.. ...+.++.++=...-.|.. .++..-..  .+.-  ...| ...++++|+|+.++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~-~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAAD-EFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--cccc-ccccccCCEEEEeCc
Confidence            46999999999999999999998 5677888888876533332 44432211  1110  0123 245779999999985

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=94.88  E-value=0.028  Score=54.45  Aligned_cols=150  Identities=15%  Similarity=0.109  Sum_probs=78.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ++||+|+|++|.+|+.++..+...+-+.=+.++|...  ..+ .+.++.... ...+..   ++|+++...++|+||...
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~---~~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPV---TDDLEAVETDPDVLIDFT   76 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCcee---eCCHHHhcCCCCEEEECC
Confidence            4799999966999999999988776555566788432  111 122222221 112443   246655435689998875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-ec-cccc---HH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GV-TMLD---VV  192 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~-t~Ld---s~  192 (390)
                       .|               ....+++....++..+  +++-|...+  ..- .+.+..+..-....++ +. ..+-   -.
T Consensus        77 -~p---------------~~~~~~~~~al~~g~~--vVigttg~~--~e~-~~~l~~aA~~~g~~v~~a~NfSlGv~ll~  135 (266)
T TIGR00036        77 -TP---------------EGVLNHLKFALEHGVR--LVVGTTGFS--EED-KQELADLAEKAGIAAVIAPNFSIGVNLMF  135 (266)
T ss_pred             -Ch---------------HHHHHHHHHHHHCCCC--EEEECCCCC--HHH-HHHHHHHHhcCCccEEEECcccHHHHHHH
Confidence             22               2344555555555422  333342221  111 1222222111001122 22 1222   24


Q ss_pred             HHHHHHHHHhCCCCCCCceEEeecccC
Q 016424          193 RANTFVAEVLGLDPRDVDVPVVGGHAG  219 (390)
Q Consensus       193 R~~~~la~~l~v~p~~V~~~ViG~Hg~  219 (390)
                      ++-...++.|    .+.++-++--|+.
T Consensus       136 ~~~~~aa~~l----~~~dieI~E~HH~  158 (266)
T TIGR00036       136 KLLEKAAKYL----GDYDIEIIELHHR  158 (266)
T ss_pred             HHHHHHHHhc----cCCCEEeeeeccC
Confidence            5556666766    2478899999986

>PRK09072 short chain dehydrogenase; Provisional

Probab=94.87  E-value=0.47  Score=44.77  Aligned_cols=114  Identities=22%  Similarity=0.237  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh---h------hhC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---N------ALT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~------al~  108 (390)
                      .++|.|+||+|++|..++..++..+.  ++++.|.+.  ......++.+   ..++..+.. -+|..   +      ++.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            46899999999999999999988886  899999876  2223333311   123333321 12221   1      134


Q ss_pred             CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      ..|+||..+|......   .+.   ...+..|..-...+.+.+..+   .+.+.+++++.
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS  139 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS  139 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            6799999998653211   121   233456655544455544432   23355666654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=94.87  E-value=0.68  Score=43.00  Aligned_cols=115  Identities=13%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      .+++.|+||+|++|+.++..++..+.  ++++.+...   ......++.+..  .++..+.. -+|   +.+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999998888775  666554322   223334443321  23333321 122   22223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~---r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                       ...|+||..+|......   .+   -.+.+..|..-...+.+.+..+   ...+.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999988643221   11   1234566766555555555543   33455666653

>PRK06139 short chain dehydrogenase; Provisional

Probab=94.86  E-value=0.41  Score=47.62  Aligned_cols=77  Identities=23%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCC---hhhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~a-------  106 (390)
                      +.++|.|+||+|++|..++..++..+.  +|++.+.++  +.....++....  .++.... .-+|   .+++       
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999886  899999886  333444444322  2232221 1122   2222       


Q ss_pred             hCCCcEEEEcCCCC
Q 016424          107 LTGMDLVIIPAGVP  120 (390)
Q Consensus       107 l~dADiVIi~ag~p  120 (390)
                      +...|++|..+|..
T Consensus        82 ~g~iD~lVnnAG~~   95 (330)
T PRK06139         82 GGRIDVWVNNVGVG   95 (330)
T ss_pred             cCCCCEEEECCCcC
Confidence            24679999999864

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=94.86  E-value=0.2  Score=50.75  Aligned_cols=108  Identities=22%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEe----CCCChhhhhCCCcEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI  114 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~----~t~dl~~al~dADiVI  114 (390)
                      ++.++.|+||+|.+|..++..|...+...|+.+.|+... ...-.|..... ..+++...    ...++..|+.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~-~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFR-SGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhccc-CCceeEEecchhhhhhhhhhccCc-eEE
Confidence            566999999999999999999998887779999999762 21212222111 23333322    134678899999 666


Q ss_pred             Ec-CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424          115 IP-AG-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (390)
Q Consensus       115 i~-ag-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~  149 (390)
                      .. ++ .|...-..|......|+.--+.+.+.+.+.+
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~  117 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG  117 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhC
Confidence            64 33 3333333466666778877777777777765

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.86  E-value=0.11  Score=52.84  Aligned_cols=72  Identities=18%  Similarity=0.151  Sum_probs=45.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhC-CC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~-~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |+||+|+||+|.+|+.+..++... .+ +.+++++.....-+...++..    .....+. ..| .+.++++|+|+.++|
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g----~~~~v~~-~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG----KEGTLQD-AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC----CcceEEe-cCC-hhHhcCCCEEEECCC
Confidence            479999999999999999755554 43 677888766432222212221    1122222 123 256899999999874

>PRK09135 pteridine reductase; Provisional

Probab=94.86  E-value=0.33  Score=44.94  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      .++|.|+||+|++|+.++..|...+.  +++++|...   ......++.+... ..+..+.+ -+|   ...+++     
T Consensus         6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999988876  889998753   2333344443221 12222221 122   222233     


Q ss_pred             --CCcEEEEcCCCCC--CCC-CCH---HHHHHHHHHHHHHHHHHHHH
Q 016424          109 --GMDLVIIPAGVPR--KPG-MTR---DDLFNINAGIVRTLCEGIAK  147 (390)
Q Consensus       109 --dADiVIi~ag~p~--k~g-~~r---~~l~~~N~~ii~~ia~~I~~  147 (390)
                        +.|+||-.+|...  ... .+.   .+.+..|+.-...+.+.+..
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~  129 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP  129 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence              5799999988532  111 122   23455666555555555443

>PRK08219 short chain dehydrogenase; Provisional

Probab=94.86  E-value=0.21  Score=45.66  Aligned_cols=111  Identities=18%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhC---CCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT---GMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~---dADiV  113 (390)
                      +++|.|+||+|++|..++..|...   .+++++|.+...  ..++.+..  ..++.+.+    ..++.++++   +.|+|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~r~~~~--~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v   75 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT---HTLLLGGRPAER--LDELAAEL--PGATPFPVDLTDPEAIAAAVEQLGRLDVL   75 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEeCCHHH--HHHHHHHh--ccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence            358999999999999999988877   379999987521  11222111  11222211    123334444   58999


Q ss_pred             EEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          114 IIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      |.++|.+....   .+.   ...+..|......+.+.+.++.  -...+++++
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~s  128 (227)
T PRK08219         76 VHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFIN  128 (227)
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence            99988643211   111   2235555555444444443321  123455554

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=94.85  E-value=0.78  Score=43.64  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +++++|.+.  ......++.+..  .++..+.. -+|   ..++       +
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDF   85 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  899999875  333344443321  23333221 112   1111       2


Q ss_pred             CCCcEEEEcCCC
Q 016424          108 TGMDLVIIPAGV  119 (390)
Q Consensus       108 ~dADiVIi~ag~  119 (390)
                      ...|++|..+|.
T Consensus        86 g~id~li~~ag~   97 (278)
T PRK08277         86 GPCDILINGAGG   97 (278)
T ss_pred             CCCCEEEECCCC
Confidence            468999999885

>PRK12742 oxidoreductase; Provisional

Probab=94.84  E-value=0.21  Score=46.03  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~   76 (390)
                      .++|.|+||+|+||..++..|+..+.  ++++.+..
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~   39 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG   39 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            45899999999999999999988876  77777653

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.81  Score=42.41  Aligned_cols=78  Identities=18%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      .++++.|+||+|++|..++..|..++.  +++++|.+.  ......++....  .++..+.+ -+|.   ..++      
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ   80 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999998886  899999876  222333333211  23332222 1232   1222      


Q ss_pred             -CCCcEEEEcCCCCC
Q 016424          108 -TGMDLVIIPAGVPR  121 (390)
Q Consensus       108 -~dADiVIi~ag~p~  121 (390)
                       .+.|+||..+|...
T Consensus        81 ~~~id~lv~~ag~~~   95 (241)
T PRK07454         81 FGCPDVLINNAGMAY   95 (241)
T ss_pred             cCCCCEEEECCCccC
Confidence             35799999998643

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.83  E-value=0.14  Score=50.21  Aligned_cols=76  Identities=22%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+.+++.|+|| |+.+.++++.|+..+ +.+|.++|++.  +..++.++.+......+.... ..++.+.+.++|+||.+
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g-~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~-~~~~~~~~~~~divINa  201 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHG-VQKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIEDVIAAADGVVNA  201 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhccCcceEEecC-HhHHHHHHhhcCEEEEc
Confidence            34568999999 999999999998766 46899999976  344444443211111122211 11223456789999997


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      .
T Consensus       202 T  202 (283)
T PRK14027        202 T  202 (283)
T ss_pred             C
Confidence            4

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=94.82  E-value=0.23  Score=51.42  Aligned_cols=125  Identities=18%  Similarity=0.269  Sum_probs=74.7

Q ss_pred             EEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           43 KVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        43 KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      ||-+||. |+.|.. ++..|...+.  ++..+|.+... ...+|...    .++.+.+ .+ .+.++++|+||.+.|+|.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~----gi~~~~g-~~-~~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEAL----GIPIYIG-HS-AENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHC----cCEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence            5789999 999997 8889998887  89999986533 22334432    3343333 33 356889999999999985


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHhCCCCC
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      ..-+ .......+++++.+.-- +.+...+..+|-+  ||==.++|.+++.+++.. ++++
T Consensus        71 ~~p~-~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~-g~~~  128 (448)
T TIGR01082        71 DNPE-IVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA-GLDP  128 (448)
T ss_pred             CCHH-HHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc-CCCC
Confidence            3221 11223445555544322 2222212223344  455456677777777654 4433

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=94.81  E-value=0.042  Score=52.42  Aligned_cols=60  Identities=20%  Similarity=0.270  Sum_probs=45.0

Q ss_pred             chhHHhhHHHHHHhccCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424            3 FSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      -|.+-+||..|+..-+=+..|+      ..+.       .+|+|+|. |+||+-.+-.|+..+ +.+|.|+|.|.
T Consensus         5 ~~~~~~~rf~~~~~l~G~~~le------kl~~-------~~V~VvGi-GGVGSw~veALaRsG-ig~itlID~D~   64 (263)
T COG1179           5 ISDAYRQRFGGIARLYGEDGLE------KLKQ-------AHVCVVGI-GGVGSWAVEALARSG-IGRITLIDMDD   64 (263)
T ss_pred             hHHHHHHHhhhHHHHcChhHHH------HHhh-------CcEEEEec-CchhHHHHHHHHHcC-CCeEEEEeccc
Confidence            3556788998886544333443      2222       28999999 999999999999988 46899999886

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.81  E-value=0.14  Score=49.87  Aligned_cols=76  Identities=17%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+..++.|+|+ |++|..++..|...+ +.+|.+++.+.  +...+.++...   ..+.. .  .+..+++.++|+||.+
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g-~~~V~v~~R~~~~a~~l~~~~~~~---~~~~~-~--~~~~~~~~~~DivIna  192 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLG-VAEITIVNRTVERAEELAKLFGAL---GKAEL-D--LELQEELADFDLIINA  192 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhhhc---cceee-c--ccchhccccCCEEEEC
Confidence            34568999999 999999999998777 35899999986  33344444321   11222 1  1334678999999998


Q ss_pred             CCCCCC
Q 016424          117 AGVPRK  122 (390)
Q Consensus       117 ag~p~k  122 (390)
                      ......
T Consensus       193 Tp~g~~  198 (278)
T PRK00258        193 TSAGMS  198 (278)
T ss_pred             CcCCCC
Confidence            654443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.80  E-value=0.32  Score=45.36  Aligned_cols=72  Identities=17%  Similarity=0.107  Sum_probs=49.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ..||.|||+ |.+|..-+..|...+.  +++++|.+... ...++...   .+++...+..+ .+.+.++|+||.+.+.+
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~d~   80 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATDDE   80 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence            459999999 9999999988888775  88999986432 12233322   24554433333 36689999999986544

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.78  E-value=0.13  Score=49.26  Aligned_cols=108  Identities=13%  Similarity=0.107  Sum_probs=61.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEe-CCCC---hhhhhC--------C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--------G  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~al~--------d  109 (390)
                      ++|.|+||+|++|..++..|...+.  +|++.+.+...  ..++....    +..+. .-+|   ++++++        .
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~g~   76 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEG----LEAFQLDYAEPESIAALVAQVLELSGGR   76 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCC----ceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999988876  89999987521  11222211    11111 1112   112222        4


Q ss_pred             CcEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~---g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .|+||..+|.....   ..+.   ...+..|..-    .+.+.+.+.+.. .+.|+++|
T Consensus        77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~is  134 (277)
T PRK05993         77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCS  134 (277)
T ss_pred             ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEEC
Confidence            69999998864321   1222   2345566544    455555555443 34566665

>PRK05872 short chain dehydrogenase; Provisional

Probab=94.78  E-value=0.54  Score=45.60  Aligned_cols=114  Identities=23%  Similarity=0.275  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCCh---hh-------h
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------A  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~dl---~~-------a  106 (390)
                      +.++|.|+||+|++|..++..++..+.  +|++.|.+.  +...+.++..   ...+..+. .-+|.   .+       .
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998886  899999876  2334444432   12222211 11232   11       1


Q ss_pred             hCCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      +...|+||..+|.... +  ..+.   ...+..|..-...+++.+..+-  ..+.|++++
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~is  142 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVS  142 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            2467999999986431 1  1122   2234556554444444443321  345666665

>PRK07023 short chain dehydrogenase; Provisional

Probab=94.77  E-value=0.18  Score=46.97  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +|+|.|+||+|++|..++..|...+.  ++++.+.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            57999999999999999999988875  788898875

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.77  E-value=0.52  Score=43.84  Aligned_cols=75  Identities=17%  Similarity=0.267  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCCh----------hhhhC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al~  108 (390)
                      ++|.|.||+|++|+.++..|...+.  +++++|.+..  .....++....  .++....+ -+|.          .+.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG   77 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999988876  8999999762  22222333221  23333221 1222          23356


Q ss_pred             CCcEEEEcCCCC
Q 016424          109 GMDLVIIPAGVP  120 (390)
Q Consensus       109 dADiVIi~ag~p  120 (390)
                      +.|+||..+|..
T Consensus        78 ~~d~vi~~a~~~   89 (255)
T TIGR01963        78 GLDILVNNAGIQ   89 (255)
T ss_pred             CCCEEEECCCCC
Confidence            789999998763

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06500 short chain dehydrogenase; Provisional

Probab=94.77  E-value=0.87  Score=42.22  Aligned_cols=111  Identities=19%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      .++|.|+||+|++|+.++..|...+.  ++++.+.+.  ......++.     .++..+.. .+|.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999998886  899999875  122222221     12222211 1222          1223


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t  158 (390)
                      ...|+||..+|......   .+..   ..+..|+.-...+.+.+..+ ...+.+++++
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~  136 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG  136 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            46799999988643211   1222   34566776666666666543 1223444443

>PRK07060 short chain dehydrogenase; Provisional

Probab=94.75  E-value=0.24  Score=45.90  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCC---hhhhh---CCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL---TGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~d---l~~al---~dADiV  113 (390)
                      +.+++.|+||+|++|..++..++..+.  ++++++.+...  ..++.+.. ...+... .-+|   +.+++   ...|+|
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~-~~~~~~~-D~~~~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGET-GCEPLRL-DVGDDAAIRAALAAAGAFDGL   81 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHh-CCeEEEe-cCCCHHHHHHHHHHhCCCCEE
Confidence            346899999999999999999998886  89999987521  11222111 0111111 1112   22333   347999


Q ss_pred             EEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh----CCCcEEEEec
Q 016424          114 IIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC----CPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~----~p~a~iiv~t  158 (390)
                      |..+|.....   ..+..   ..+..|..-...+.+.+.+.    +..+.+++++
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s  136 (245)
T PRK07060         82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVS  136 (245)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEc
Confidence            9998864321   12222   23445665555555555443    2235666665

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=94.74  E-value=1.4  Score=40.54  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC------hhhhhCCCcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ------LENALTGMDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d------l~~al~dADiVI  114 (390)
                      |+|.|+||+|+||..++..|...+....+++.+.+....    +.    ..+++.+.. -+|      +.+.+...|+||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999888875434677666654211    11    122222211 111      223456889999


Q ss_pred             EcCCCCC
Q 016424          115 IPAGVPR  121 (390)
Q Consensus       115 i~ag~p~  121 (390)
                      ..+|...
T Consensus        73 ~~aG~~~   79 (235)
T PRK09009         73 NCVGMLH   79 (235)
T ss_pred             ECCcccc
Confidence            9998753

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.69  E-value=0.084  Score=54.47  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -...||.|||+ |++|..++..|...+. .+|.++..+..  .+..|........+..   -+++.+.+.+||+||.+.+
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~--ra~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~  251 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIE--KAQKITSAFRNASAHY---LSELPQLIKKADIIIAAVN  251 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHH--HHHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcC
Confidence            34579999999 9999999999887763 58999998752  2233333211122222   2466788999999999987


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       252 a~~  254 (414)
T PRK13940        252 VLE  254 (414)
T ss_pred             CCC
Confidence            764

>PRK12320 hypothetical protein; Provisional

Probab=94.69  E-value=0.22  Score=54.64  Aligned_cols=98  Identities=13%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC---CCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~---t~dl~~al~dADiVIi~ag  118 (390)
                      |||.|+||+|.+|+.++..|...+.  ++..+|.....     +.+    ..++.+.+   ...+.++++++|+||..++
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~----~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa   69 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALD----PRVDYVCASLRNPVLQELAGEADAVIHLAP   69 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----ccc----CCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence            6999999999999999998888876  88889875311     111    11222111   1124566789999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...  ..    ....|+.-...+.+.+.+.+.  .++.+|
T Consensus        70 ~~~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         70 VDT--SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             cCc--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            521  11    113577777778887776653  455554

>PRK07035 short chain dehydrogenase; Provisional

Probab=94.68  E-value=0.52  Score=44.05  Aligned_cols=114  Identities=13%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l  107 (390)
                      .++|.|+||+|++|..++..|...+.  .+++.|.+.  ......++.+..  ..+..+.. -+|.   +++       +
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999988875  899999875  334444454322  12222211 1121   112       2


Q ss_pred             CCCcEEEEcCCC-C-CCC--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 TGMDLVIIPAGV-P-RKP--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~-p-~k~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      ...|+||..+|. + ..+  ..+..   ..+..|..-...+.+.+.++   ...+.+++++
T Consensus        84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  144 (252)
T PRK07035         84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVA  144 (252)
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            357999998874 2 122  22222   23455554444444444333   2345666665

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.68  E-value=0.56  Score=44.10  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  .+++++.+. .......+.+..  .++..+.. .+|   ..+.++      
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            456899999999999999999998876  788888874 222333333221  23333221 122   222233      


Q ss_pred             -CCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                       ..|++|..+|.... +  ..+.   ...+..|+.-...+.+.+..+   ...+.+++++.
T Consensus        90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS  150 (258)
T PRK06935         90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIAS  150 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence             57999999886431 1  1222   233455555444444444332   22455666654

>PLN02494 adenosylhomocysteinase

Probab=94.67  E-value=0.21  Score=52.32  Aligned_cols=95  Identities=22%  Similarity=0.178  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....+|+|+|. |.+|..++..+...+.  +|+.+|++... ..+.+..     ..+      .++.++++.+|+||.+.
T Consensus       252 LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~G-----~~v------v~leEal~~ADVVI~tT  317 (477)
T PLN02494        252 IAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALMEG-----YQV------LTLEDVVSEADIFVTTT  317 (477)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhcC-----Cee------ccHHHHHhhCCEEEECC
Confidence            34679999999 9999999999987776  79999998722 2222111     111      13567899999999976


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  164 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~  164 (390)
                      |...               ++.  ...+....++|++++++-+.+.+
T Consensus       318 Gt~~---------------vI~--~e~L~~MK~GAiLiNvGr~~~eI  347 (477)
T PLN02494        318 GNKD---------------IIM--VDHMRKMKNNAIVCNIGHFDNEI  347 (477)
T ss_pred             CCcc---------------chH--HHHHhcCCCCCEEEEcCCCCCcc
Confidence            5431               111  34455566899999998864443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.67  E-value=0.15  Score=49.88  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhc--ccCCCeEEEEeCC-CChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISH--MDTGAVVRGFLGQ-PQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~--~~~~~~v~~~~~t-~dl~~al~dADiVIi  115 (390)
                      .+.||+.||. |-.-.|........+....++-+|+++ +...+..+..  .....++++.++. .+....+++.|+|++
T Consensus       120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence            4569999998 877666555554444445788999998 4444444432  1123456665432 233446789999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL  156 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv  156 (390)
                      ++-+.    |+..        --.++...+.++. |++.+++
T Consensus       199 AalVg----~~~e--------~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  199 AALVG----MDAE--------PKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -TT-S----------------SHHHHHHHHHHHS-TTSEEEE
T ss_pred             hhhcc----cccc--------hHHHHHHHHHhhCCCCcEEEE
Confidence            87332    2211        2345666666665 6776543

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.65  E-value=0.12  Score=52.77  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|.|||. |+||+.++..+...+.  ++..||.....   .   .    .... +   .++++.++.||+|++..-
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~---~----~~~~-~---~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R---G----DEGD-F---RSLDELVQEADILTFHTP  176 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c---c----cccc-c---CCHHHHHhhCCEEEEeCC
Confidence            45679999999 9999999999987776  99999964211   0   0    0111 1   368888999999998643


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPR-KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~-k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ... .+-.++ .++.         .+.+....|++++||++
T Consensus       177 Lt~~g~~~T~-~li~---------~~~l~~mk~gailIN~a  207 (378)
T PRK15438        177 LFKDGPYKTL-HLAD---------EKLIRSLKPGAILINAC  207 (378)
T ss_pred             CCCCcccccc-cccC---------HHHHhcCCCCcEEEECC
Confidence            211 111121 1111         13344456888888886

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.65  E-value=0.18  Score=52.47  Aligned_cols=127  Identities=22%  Similarity=0.238  Sum_probs=81.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ++||+|+|- |.-|.+++..|...+.  ++..+|.++.. .... ...  ....+....|..+. +...++|+||..-|+
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~-~~~--~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi   79 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAA-QPL--LLEGIEVELGSHDD-EDLAEFDLVVKSPGI   79 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhh-hhh--hccCceeecCccch-hccccCCEEEECCCC
Confidence            789999999 9999999999998886  89999988722 1111 111  12344444444443 678999999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEe-cCCCcccHHHHHHHHHHhCCC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLI-SNPVNSTVPIAAEVFKKAGTY  178 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~  178 (390)
                      |...-+ -.....+.++++-++--..+..  +|  ||.+- ||==.++|.+++++++.. |+
T Consensus        80 ~~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p--~vaITGTNGKTTTTsli~~~l~~~-G~  137 (448)
T COG0771          80 PPTHPL-VEAAKAAGIEIIGDIELFYRLSGEAP--IVAITGTNGKTTTTSLIAHLLKAA-GL  137 (448)
T ss_pred             CCCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCC--EEEEECCCchHHHHHHHHHHHHhc-CC
Confidence            864331 1122345566666665555543  34  44333 566667777777776654 44

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.64  E-value=0.16  Score=53.09  Aligned_cols=92  Identities=21%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ....++|+|+|. |.||..++..+...+.  ++..+|++.... .+..  +   ...  .    .++.++++.||+||++
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~---G~~--~----~~leell~~ADIVI~a  316 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E---GYQ--V----VTLEDVVETADIFVTA  316 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c---Cce--e----ccHHHHHhcCCEEEEC
Confidence            345679999999 9999999999988776  799999886322 2211  1   111  1    2467889999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      .|.+.               ++.  ...+....|++++++++-.
T Consensus       317 tGt~~---------------iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        317 TGNKD---------------IIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCccc---------------ccC--HHHHhccCCCcEEEEcCCC
Confidence            65321               111  2355556789999999855

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.63  E-value=0.2  Score=51.79  Aligned_cols=127  Identities=18%  Similarity=0.255  Sum_probs=75.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      .++|.|+|+ |+.|...+..|...+.  ++.++|.+........|....  ..++.+.+..+ .+.+.++|+||.+.|+|
T Consensus         5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGIS   78 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence            458999999 9999999999988886  889999876321122343321  23455444322 23457999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHH--HHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424          121 RKPGMTRDDLFNINAGIVR--TLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~--~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~  175 (390)
                      ...-. ......++++++.  ++...+.+. .+..+|-+  ||==.+++.+++.+++..
T Consensus        79 ~~~p~-~~~a~~~~i~v~~~~~~~~~~~~~-~~~~~I~ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         79 ERQPD-IEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             CCCHH-HHHHHHcCCcEEEhHHHHHHhhhc-CCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            53221 1112235566553  333232221 12234444  454456777777777664

>PRK06949 short chain dehydrogenase; Provisional

Probab=94.63  E-value=0.35  Score=45.21  Aligned_cols=77  Identities=17%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CC---Chhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~---dl~~al------  107 (390)
                      ..++|.|+||+|++|+.++..++..+.  ++++.+.+.  +.....++....  .++..+.+ -+   ++.+.+      
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETE   83 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            457999999999999999999998876  789999876  233333343221  22333221 11   222222      


Q ss_pred             -CCCcEEEEcCCCC
Q 016424          108 -TGMDLVIIPAGVP  120 (390)
Q Consensus       108 -~dADiVIi~ag~p  120 (390)
                       ...|+||..+|..
T Consensus        84 ~~~~d~li~~ag~~   97 (258)
T PRK06949         84 AGTIDILVNNSGVS   97 (258)
T ss_pred             cCCCCEEEECCCCC
Confidence             2579999998864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.63  E-value=0.096  Score=56.57  Aligned_cols=138  Identities=17%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCCh----hhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl----~~al~dADiVIi~  116 (390)
                      ..+|.|+|. |.+|+.++..|...+.  +++.+|.|+.  .+..+.+... .-+.+ . .+|.    ...+.+||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~--~v~~~~~~g~-~v~~G-D-at~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDIS--AVNLMRKYGY-KVYYG-D-ATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHH--HHHHHHhCCC-eEEEe-e-CCCHHHHHhcCCccCCEEEEE
Confidence            469999999 9999999999988877  8899999862  2222333221 12222 1 1232    1346789999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  195 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~  195 (390)
                      .+.+           ..|.    .++..+++.+|+..++.- .||.+.      +.+++.+   .+.++-=|...+.++-
T Consensus       472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~G---a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEA------HELLQAG---VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhCC---CCEEEccHHHHHHHHH
Confidence            6322           2333    455667788999866544 566543      3345543   2455433433344455


Q ss_pred             HHHHHHhCCCCCCCc
Q 016424          196 TFVAEVLGLDPRDVD  210 (390)
Q Consensus       196 ~~la~~l~v~p~~V~  210 (390)
                      ...-..+|+++++++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            555567787776653

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.61  E-value=0.13  Score=45.22  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=45.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|+|+|.+..+|.+++..|...+.  ++.++|.+                       |.|+++++++||+||.+.|
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg   80 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP   80 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence            4567999999988999999999987664  66666643                       2367788999999999988


Q ss_pred             CC
Q 016424          119 VP  120 (390)
Q Consensus       119 ~p  120 (390)
                      .|
T Consensus        81 ~~   82 (140)
T cd05212          81 KP   82 (140)
T ss_pred             CC
Confidence            76

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.61  E-value=0.13  Score=48.95  Aligned_cols=33  Identities=33%  Similarity=0.531  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||.|+|+ |++|+.++..|+..+ +.+|+++|.|.
T Consensus         1 kVlvvG~-GGlG~eilk~La~~G-vg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMG-FGQIHVIDMDT   33 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCE
Confidence            6899999 999999999999988 47899999985

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.61  E-value=0.22  Score=48.96  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=48.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHHHHHHHhcccCCCeEEEEeCC--CChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLGQ--PQLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g~a~DL~~~~~~~~v~~~~~t--~dl~~al~dAD  111 (390)
                      .+..++.|+|| |+.+.+++..++..+ +.+|.+++++.     ++..+.++.+.. ...+....-.  ..+.+++.++|
T Consensus       122 ~~~k~vlvlGa-GGaarAi~~~l~~~g-~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~~~~~~~~~l~~~~~~aD  198 (288)
T PRK12749        122 IKGKTMVLLGA-GGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALASAD  198 (288)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEEechhhhhhhhhhcccCC
Confidence            34568999999 999999888887765 46899999984     233333443221 2223332100  11334678899


Q ss_pred             EEEEcC
Q 016424          112 LVIIPA  117 (390)
Q Consensus       112 iVIi~a  117 (390)
                      +||.+.
T Consensus       199 ivINaT  204 (288)
T PRK12749        199 ILTNGT  204 (288)
T ss_pred             EEEECC
Confidence            999975

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.60  E-value=0.21  Score=52.25  Aligned_cols=125  Identities=15%  Similarity=0.139  Sum_probs=77.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHH-hcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI-SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL-~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -.++||.|+|+ |+.|.+++..|...+.  ++..+|.+...  ..++ ..    ..++.+.+..+ .+.+.++|+||.+.
T Consensus        13 ~~~~~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~--~~~~l~~----~gi~~~~~~~~-~~~~~~~d~vV~Sp   82 (473)
T PRK00141         13 ELSGRVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETA--RHKLIEV----TGVADISTAEA-SDQLDSFSLVVTSP   82 (473)
T ss_pred             ccCCeEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHH--HHHHHHh----cCcEEEeCCCc-hhHhcCCCEEEeCC
Confidence            34568999999 9999999999988886  89999975422  1222 22    13333333222 35578999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----hC-CCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAK-----CC-PNATVNLI--SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-----~~-p~a~iiv~--tNPvd~~t~i~ae~~~~~  175 (390)
                      |+|...-+ .......+++++.++.-....     +. |. .+|-+  ||==.+++.+++.+++..
T Consensus        83 gi~~~~p~-~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~-~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         83 GWRPDSPL-LVDAQSQGLEVIGDVELAWRLDQAGVFGEPR-TWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             CCCCCCHH-HHHHHHCCCceeeHHHHHHHhhhhhccCCCC-CEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            99854321 222335567777666643322     22 32 24444  454456777787877664

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.60  E-value=0.11  Score=51.03  Aligned_cols=78  Identities=21%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+..+|+|||.|+-||.+++.+|...+.  .+.+++.                       .|.|+.+.++.||+||.+.|
T Consensus       156 l~Gk~vvViGrs~iVGkPla~lL~~~~a--tVt~~hs-----------------------~t~~l~~~~~~ADIVV~avG  210 (285)
T PRK14189        156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA--TVTICHS-----------------------KTRDLAAHTRQADIVVAAVG  210 (285)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEecC-----------------------CCCCHHHHhhhCCEEEEcCC
Confidence            4567999999966779999999987764  5554321                       14578889999999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  161 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPv  161 (390)
                      .|.   .-            ..     ....|++++|.++ |+.
T Consensus       211 ~~~---~i------------~~-----~~ik~gavVIDVGin~~  234 (285)
T PRK14189        211 KRN---VL------------TA-----DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             CcC---cc------------CH-----HHcCCCCEEEEcccccc
Confidence            553   11            00     2235889988885 653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.56  E-value=1.4  Score=41.71  Aligned_cols=117  Identities=16%  Similarity=0.237  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------  106 (390)
                      +.+++.|+||+|++|..++..|+..+.  ++++.|.+.  ......++....  .++..+.. -+|.   +++       
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999988875  788888876  233334443321  23333221 1221   112       


Q ss_pred             hCCCcEEEEcCCCCC-CC--CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 016424          107 LTGMDLVIIPAGVPR-KP--GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       107 l~dADiVIi~ag~p~-k~--g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      +...|++|..+|... .+  ..+..   ..+..|..-.    +.+.+.+.+ ...+.|++++...
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~  148 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM  148 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence            244799999988632 11  11221   2234454333    333343433 3456677776543

>PRK12743 oxidoreductase; Provisional

Probab=94.55  E-value=0.98  Score=42.45  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l  107 (390)
                      .+|.|+||+|++|..++..|+..+.  ++++.+...   ......++....  ..+..+.. -+|.   +++       +
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999998886  777765433   223334443322  23333221 1221   111       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~----~~~p~a~iiv~tN  159 (390)
                      ...|+||..+|.....   ..+.   ...+..|..-...+.+.+.    +....+.+++++.
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            3579999998864321   1122   2234455554444444433    3333466777654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.55  E-value=0.12  Score=52.03  Aligned_cols=73  Identities=25%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEE-EEeCCchHHH-HHH-HhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGV-TAD-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~-L~Di~~~~g~-a~D-L~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||+|+||+|.+|..++..|...|.+ +|+ +++.+...+. ..+ ..+......+.. . ..|..+.++++|+|+++.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~al   76 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLAL   76 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECC
Confidence            58999999999999999999877644 555 7787642221 111 221111112222 1 124444446999999986

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=94.54  E-value=0.24  Score=47.92  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ++||+|.||+|.+|+.+...+.+.+-..=..-+|...-.-.-.|..+...  ...+-+   +.|+.....++|++|=.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v---~~~~~~~~~~~DV~IDF   76 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV---TDDLLLVKADADVLIDF   76 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCcee---ecchhhcccCCCEEEEC
Confidence            68999999999999999999998884333445666541112223332221  122332   23556778899998863

>PRK08324 short chain dehydrogenase; Validated

Probab=94.54  E-value=0.53  Score=51.52  Aligned_cols=113  Identities=21%  Similarity=0.292  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|+++|.+.  ......++...   ..+..+.. -+|   ..+++       
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999998876  899999986  22333334321   12222211 122   22223       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+.|+||..+|......   .+..   ..+..|..-    ++...+.+.+....+.+++++
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            36899999998643221   2222   223444433    344444444433346666664

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.53  E-value=1.2  Score=43.18  Aligned_cols=117  Identities=15%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh----
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL----  107 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al----  107 (390)
                      .+.++|.|+||+|++|..++..++..+.  ++++++.+.   .......+...  ..++..+.. -+|   +.+.+    
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~  119 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETV  119 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            3457899999999999999999998876  889999875   22233333221  123333221 112   22222    


Q ss_pred             ---CCCcEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 016424          108 ---TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  159 (390)
Q Consensus       108 ---~dADiVIi~ag~p~--k~--g~~r---~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tN  159 (390)
                         ...|+||..+|...  .+  ..+.   ...+..|+.-...+.+.+..+ .+.+.+|++|.
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence               35799999988532  11  1222   234667777777777776654 34566666654

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.51  E-value=1.2  Score=41.79  Aligned_cols=114  Identities=14%  Similarity=0.136  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-------  108 (390)
                      ..+|.|+||+|++|..++..|+..+.  ++++.+.++ ......++....  .++..+.. -++   +..+++       
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            45899999999999999999998886  788888876 223334443322  22333221 122   223332       


Q ss_pred             CCcEEEEcCCCCCCCCC--CH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          109 GMDLVIIPAGVPRKPGM--TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~--~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      ..|+||..+|.......  +.   ...+..|......+.+.+..+-  ..+.+++++
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence            57999999986432221  11   2345566655555555544322  234455443

>PRK06940 short chain dehydrogenase; Provisional

Probab=94.50  E-value=0.7  Score=44.32  Aligned_cols=111  Identities=17%  Similarity=0.170  Sum_probs=58.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------CC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------TG  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------~d  109 (390)
                      .|++||+++|++|..++..|. .+.  +|++.|.+.  ......++.+.  ..++..+.. -+|   ..+++      ..
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~   76 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGP   76 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence            355555444899999999885 554  899999876  22333344322  123332221 122   22222      35


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t  158 (390)
                      .|++|..+|.... ..+-...+..|+.-...+.+.+... .+++.+++++
T Consensus        77 id~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is  125 (275)
T PRK06940         77 VTGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA  125 (275)
T ss_pred             CCEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            8999999987521 2233345666655544444444433 1234445544

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.50  E-value=0.09  Score=52.61  Aligned_cols=71  Identities=23%  Similarity=0.438  Sum_probs=46.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ++||+|+||+|.+|..++.+|...+ ...||..+-.+...+...++.    ...+.... . + ..+++++|+||.+.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~----g~~i~v~d-~-~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFK----GKELKVED-L-T-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeC----CceeEEee-C-C-HHHHcCCCEEEECCC
Confidence            4799999999999999999998854 345777775543222222221    12344321 1 2 245789999999864

>PRK05599 hypothetical protein; Provisional

Probab=94.50  E-value=0.61  Score=43.82  Aligned_cols=115  Identities=13%  Similarity=0.200  Sum_probs=64.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC----------hhhhhC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENALT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~al~  108 (390)
                      |-+.|+||++++|..++..+.+ +  ..+++.+.++  +...+.++..... ..+..+.. -+|          ..+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g--~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-G--EDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-C--CEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            3578999999999999998874 5  4899999876  3445555643221 12222211 112          112234


Q ss_pred             CCcEEEEcCCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          109 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       109 dADiVIi~ag~p~k~g---~~r---~~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      .-|++|..+|......   .+.   .+....|    ..+.+.+.+.+.+...++.|+++|--
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~  138 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSI  138 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            6799999988643211   111   1222223    23334455556554445777777643

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.50  E-value=0.13  Score=54.63  Aligned_cols=93  Identities=23%  Similarity=0.314  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..++|+|||. |.+|+.++..+...+.  +++.||.......+.++       .++..    ++++.++.||+|++....
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~lP~  204 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHTPL  204 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEccCC
Confidence            4679999999 9999999999987776  89999985422222211       12221    478899999999998532


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..           .+..++-  .+.+....|++++|+++-
T Consensus       205 t~-----------~t~~li~--~~~l~~mk~ga~lIN~aR  231 (526)
T PRK13581        205 TP-----------ETRGLIG--AEELAKMKPGVRIINCAR  231 (526)
T ss_pred             Ch-----------HhhcCcC--HHHHhcCCCCeEEEECCC
Confidence            11           1111221  234444568899999863

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.49  E-value=0.1  Score=51.58  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||.|+|+ |++|+.++..|+..+ +.+|.|+|-+.
T Consensus         1 kVLIvGa-GGLGs~vA~~La~aG-Vg~ItlvD~D~   33 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLLGWG-VRHITFVDSGK   33 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcC-CCeEEEECCCE
Confidence            7899999 999999999999887 46899999764

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08862 short chain dehydrogenase; Provisional

Probab=94.46  E-value=1.2  Score=41.69  Aligned_cols=115  Identities=12%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCC---hhh-------hh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~-------al  107 (390)
                      .+.+.|+||++++|..++..|+..+.  +|++.+.+.  ......++....  .++..+. ..+|   .++       .+
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF   80 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45889999999999999999999886  899999876  233334443221  2222221 1112   211       12


Q ss_pred             C-CCcEEEEcCCCCCCCC----CCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 T-GMDLVIIPAGVPRKPG----MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~-dADiVIi~ag~p~k~g----~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      . .-|++|..+|....++    .+..+   .+..|.    .+.+.+.+.+.+...++.|+++|.
T Consensus        81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            3 6899999987432221    22222   222232    334455555655444567777763

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.46  E-value=0.13  Score=51.19  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||.|||+ |++|..++..|+..| +.+|.|+|.|.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~G-vg~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTG-FGEIHIIDLDT   33 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhc-CCeEEEEcCCC
Confidence            6899999 999999999999888 47899999874

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.45  E-value=0.25  Score=48.34  Aligned_cols=76  Identities=13%  Similarity=0.351  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHHHHHHHhcccCCCeEEEEe--CCCChhhhhCCCcE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDL  112 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g~a~DL~~~~~~~~v~~~~--~t~dl~~al~dADi  112 (390)
                      +.+++.|+|| |++|.+++..|+..+ +.+|+++|++.     +...+.++.+......+....  ...++.++++.+|+
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G-~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDG-AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            4568999999 999999999888877 45799999974     233444453321111222111  11234456778999


Q ss_pred             EEEcC
Q 016424          113 VIIPA  117 (390)
Q Consensus       113 VIi~a  117 (390)
                      ||.+.
T Consensus       203 lINaT  207 (289)
T PRK12548        203 LVNAT  207 (289)
T ss_pred             EEEeC
Confidence            99974

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=94.45  E-value=0.13  Score=52.48  Aligned_cols=93  Identities=22%  Similarity=0.221  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |+||+.++..+...+.  +++.||.....   .     .  .... +   .++++.++.||+|++...
T Consensus       114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~-----~--~~~~-~---~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A-----E--GDGD-F---VSLERILEECDVISLHTP  176 (381)
T ss_pred             cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c-----c--cCcc-c---cCHHHHHhhCCEEEEeCc
Confidence            45679999999 9999999999987776  99999975311   0     0  0111 1   257888999999999753


Q ss_pred             CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRK-PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k-~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .-.. +..++ .++  |       .+.+....|++++||.+
T Consensus       177 lt~~g~~~T~-~li--~-------~~~l~~mk~gailIN~a  207 (381)
T PRK00257        177 LTKEGEHPTR-HLL--D-------EAFLASLRPGAWLINAS  207 (381)
T ss_pred             CCCCcccccc-ccC--C-------HHHHhcCCCCeEEEECC
Confidence            2110 00111 111  1       13444557899999886

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=94.41  E-value=0.16  Score=47.95  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999998886  799999876

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.39  E-value=1.1  Score=42.11  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEe-CCCChh---hh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~-~t~dl~---~a------  106 (390)
                      +.+++.|+||+|++|..++..|...+.  .+++.+.+.   ......++.+..  .++..+. .-+|..   +.      
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998885  677766643   222333443321  2232221 112221   11      


Q ss_pred             -hCCCcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          107 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       107 -l~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       +...|++|..+|.+...   ..+..   ..+..|+.    ..+.+.+.+.+....+.+++++-
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence             23579999998864321   12222   23455643    33445555555555566666653

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.39  E-value=0.17  Score=49.99  Aligned_cols=96  Identities=19%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|.|||- |.||+.++..++..+.  +++.||.....       +   ... ..+   .++++.++.||+|++...
T Consensus       120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~---~~~-~~~---~~l~ell~~aDiv~~~lp  182 (303)
T PRK06436        120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D---GIS-SIY---MEPEDIMKKSDFVLISLP  182 (303)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c---Ccc-ccc---CCHHHHHhhCCEEEECCC
Confidence            44679999999 9999999987776666  89999975311       0   011 111   367899999999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCccc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  164 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~~  164 (390)
                      ..  +         .+-.++-  .+.+....|++++||++  .++|.-
T Consensus       183 ~t--~---------~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd~~  217 (303)
T PRK06436        183 LT--D---------ETRGMIN--SKMLSLFRKGLAIINVARADVVDKN  217 (303)
T ss_pred             CC--c---------hhhcCcC--HHHHhcCCCCeEEEECCCccccCHH
Confidence            11  1         1111111  34444556899999996  555543

>PRK14852 hypothetical protein; Provisional

Probab=94.39  E-value=0.11  Score=58.53  Aligned_cols=75  Identities=21%  Similarity=0.251  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h--------------H--HHHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T--------------P--GVTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~--------------~--g~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||.|||+ |++|+.++..|+..|+ .+|.|+|-|.     +              +  ..+..+.++....+|+.+..
T Consensus       332 ~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~  409 (989)
T PRK14852        332 RSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE  409 (989)
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence            459999999 9999999999999985 7899999874     1              1  11223344443456666532


Q ss_pred             ---CCChhhhhCCCcEEEEcC
Q 016424          100 ---QPQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 ---t~dl~~al~dADiVIi~a  117 (390)
                         .++..+-++++|+||-+.
T Consensus       410 ~I~~en~~~fl~~~DiVVDa~  430 (989)
T PRK14852        410 GVAAETIDAFLKDVDLLVDGI  430 (989)
T ss_pred             CCCHHHHHHHhhCCCEEEECC
Confidence               234445578999999754

>PRK12746 short chain dehydrogenase; Provisional

Probab=94.38  E-value=1.7  Score=40.58  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      +++|.|+||+|++|+.++..|...+.  ++.+. +.+.  ......++...  ...+..+.. -+|.   .+++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            36899999999999999999888775  66664 3433  22223333221  122332221 1222   1222      


Q ss_pred             -------CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 -------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 -------~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                             .+.|+||.++|......   .+.   ...+..|+.-...+.+.+.++. ..+.++++|
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~s  146 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINIS  146 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence                   26899999998643211   121   2234566665555555555442 234555554

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.38  E-value=0.12  Score=50.73  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||.||-||.+++.+|...+.  ++.++...                       |.++.+.+++||+||.+.|
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg  210 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIG  210 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecC
Confidence            4568999999999999999999988775  67666311                       2256788999999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NP  160 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NP  160 (390)
                      .|.-   -+.++                 ..|++++|-++ |+
T Consensus       211 ~~~~---v~~~~-----------------ik~GavVIDvgin~  233 (284)
T PRK14179        211 RGHF---VTKEF-----------------VKEGAVVIDVGMNR  233 (284)
T ss_pred             cccc---CCHHH-----------------ccCCcEEEEeccee
Confidence            7752   11111                 56888888775 55

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.38  E-value=1.8  Score=40.06  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..++.|+|++|++|+.++..+...+.  ++++.|.+.
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999998888875  789999876

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.36  E-value=0.29  Score=50.91  Aligned_cols=124  Identities=19%  Similarity=0.238  Sum_probs=77.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..||.|+|. |..|.+++..|...+.  ++..+|.+..   .....+|...    .+..+.+. +..+.+.++|+||.+.
T Consensus        14 ~~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~~~-~~~~~~~~~dlVV~Sp   85 (458)
T PRK01710         14 NKKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL----GVKLVLGE-NYLDKLDGFDVIFKTP   85 (458)
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC----CCEEEeCC-CChHHhccCCEEEECC
Confidence            469999999 9999999999998886  8999998752   1122334332    23333332 2246688999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcccHHHHHHHHHHh
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~~t~i~ae~~~~~  175 (390)
                      |+|...-+ .......+++++.++- .+.+.. +..+|-+|  |==.+++.+++.++...
T Consensus        86 gi~~~~p~-~~~a~~~~i~i~s~~e-~~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~~  142 (458)
T PRK01710         86 SMRIDSPE-LVKAKEEGAYITSEME-EFIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKEE  142 (458)
T ss_pred             CCCCCchH-HHHHHHcCCcEEechH-Hhhhhc-CCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            98754322 2222356677776553 222333 23344454  44446667777777653

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.36  E-value=0.085  Score=52.94  Aligned_cols=72  Identities=21%  Similarity=0.361  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +++||+|+||+|.+|..+..+|...+ ...+|.++-..+..|.-..+..    ..+.+..  .+ .++++++|+|+++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~~--~~-~~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVRE--VD-SFDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEee--CC-hHHhcCCCEEEEcCC
Confidence            56899999999999999999998643 3567777755442222122221    2233321  22 234789999999763

>PRK08264 short chain dehydrogenase; Validated

Probab=94.33  E-value=0.92  Score=41.88  Aligned_cols=113  Identities=15%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhC---CCcE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT---GMDL  112 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~---dADi  112 (390)
                      +.++|.|+||+|++|+.++..|...+. .++++++.+.....  +   .  ...+..+.+    .+++.+.++   ..|+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~   76 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D---L--GPRVVPLQLDVTDPASVAAAAEAASDVTI   76 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h---c--CCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            346899999999999999999987763 36888998752111  1   1  112222211    122223333   5799


Q ss_pred             EEEcCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424          113 VIIPAGVPRKP----GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (390)
Q Consensus       113 VIi~ag~p~k~----g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP  160 (390)
                      ||..+|.+..+    ..+..   +.+..|..-...+.+.+.+.   ...+.+++++..
T Consensus        77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  134 (238)
T PRK08264         77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV  134 (238)
T ss_pred             EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence            99999873221    12222   23455665555555554432   234566666543

>PRK08263 short chain dehydrogenase; Provisional

Probab=94.29  E-value=0.17  Score=48.30  Aligned_cols=34  Identities=15%  Similarity=-0.058  Sum_probs=30.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +.|.|+||+|++|+.++..|+.++.  ++++.|.+.
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~   37 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT   37 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4789999999999999999988875  789999875

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=94.28  E-value=0.16  Score=51.52  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHH-hCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~-~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +||+|+||+|.||+.+...|. ...+ +.+++++......|....+..    ..+.+.. .++ .+++++.|+|+.++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~----~~~~v~~-~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGG----TTGTLQD-AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCC----CcceEEc-Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 4453 578999987652222121211    1223221 222 247899999999875

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.27  E-value=0.12  Score=52.51  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~  116 (390)
                      ..++.||+|||+ |.+|...+..+...+.  ++..+|.+...  ...+.... ...+... ....++.+.++++|+||.+
T Consensus       164 ~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~--~~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       164 GVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDR--LRQLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHhc-CceeEeccCCHHHHHHHHccCCEEEEc
Confidence            346678999999 9999999999988775  79999987521  11122111 1122211 1123567889999999999


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      .+.|-
T Consensus       238 ~~~~g  242 (370)
T TIGR00518       238 VLIPG  242 (370)
T ss_pred             cccCC
Confidence            86643

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.26  E-value=0.14  Score=50.21  Aligned_cols=58  Identities=24%  Similarity=0.421  Sum_probs=45.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||.|.-||.+++.+|...+-  .+.++..                       -|.|+++.++.||+||.+.|
T Consensus       153 l~Gk~vvViGrS~iVGkPla~lL~~~~a--TVtichs-----------------------~T~~l~~~~~~ADIvIsAvG  207 (287)
T PRK14173        153 LAGKEVVVVGRSNIVGKPLAALLLREDA--TVTLAHS-----------------------KTQDLPAVTRRADVLVVAVG  207 (287)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEecC
Confidence            4567999999988999999999987663  4543321                       14577888999999999999


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       208 kp~  210 (287)
T PRK14173        208 RPH  210 (287)
T ss_pred             CcC
Confidence            774

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=94.24  E-value=0.9  Score=41.93  Aligned_cols=113  Identities=19%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      ++|.|+|++|++|+.++..|...+.  .+++.|.+..   ......+.+  ...++..+... +|   +.+++       
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEECAEALAEIEEEE   78 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999988875  8899998742   111111211  12234333211 22   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCE----GIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~----~I~~~~p~a~iiv~tN  159 (390)
                      ...|+||..+|.....   ..+..   ..+..|+.-...+.+    .+.+. +.+.+++++.
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss  139 (245)
T PRK12824         79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISS  139 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECC
Confidence            3579999998864321   11222   234455555444433    33333 4556777764

>PRK07985 oxidoreductase; Provisional

Probab=94.24  E-value=1.4  Score=42.81  Aligned_cols=115  Identities=20%  Similarity=0.198  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeC-CCCh----------hh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQL----------EN  105 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~  105 (390)
                      .+++.|+||+|++|..++..|+..+.  ++++.+.+.    .......+.+.  ..++..+.. -+|.          .+
T Consensus        49 ~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~  124 (294)
T PRK07985         49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEKFARSLVHEAHK  124 (294)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            35899999999999999999998886  788887653    11222222221  122322221 1221          12


Q ss_pred             hhCCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          106 ALTGMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       106 al~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                      .+...|++|..+|...  .+  ..+..   ..+..|+.-...+.+.+..+- .++.||++|-
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS  186 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS  186 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence            2345799999988632  11  22333   335566655555555554432 3466777663

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=94.23  E-value=0.17  Score=49.24  Aligned_cols=60  Identities=18%  Similarity=0.307  Sum_probs=43.9

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        46 VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||. |.+|.+++..|...+.  +|.+||++...  +.++....    +..   ++++.+++++||+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            5898 9999999999988886  89999997621  22233211    122   245678999999999986

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.21  E-value=0.31  Score=50.24  Aligned_cols=91  Identities=25%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....+|+|+|. |.+|..++..+...+.  ++..+|.+.... .+..    . ..  +.    .+++++++++|+||.+.
T Consensus       193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~~----~-G~--~v----~~leeal~~aDVVItaT  258 (406)
T TIGR00936       193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEAAM----D-GF--RV----MTMEEAAKIGDIFITAT  258 (406)
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHHh----c-CC--Ee----CCHHHHHhcCCEEEECC
Confidence            45679999999 9999999999987775  799999887321 1111    1 11  11    13467899999999876


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      |.+               .++..  ..+....+.+++++++-.
T Consensus       259 G~~---------------~vI~~--~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       259 GNK---------------DVIRG--EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             CCH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence            532               12221  233444578899988754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.20  E-value=0.33  Score=50.27  Aligned_cols=92  Identities=21%  Similarity=0.170  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....+|+|+|. |.+|..++..+...+.  +++.+|++..+. .+..    . ...+      .++.++++++|+||.+.
T Consensus       210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~----~-G~~v------~~l~eal~~aDVVI~aT  275 (425)
T PRK05476        210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM----D-GFRV------MTMEEAAELGDIFVTAT  275 (425)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh----c-CCEe------cCHHHHHhCCCEEEECC
Confidence            35679999999 9999999999988876  899999987322 1111    1 1121      13568899999999886


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      |.+.               ++.  ...+....+++++++++-+.
T Consensus       276 G~~~---------------vI~--~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        276 GNKD---------------VIT--AEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             CCHH---------------HHH--HHHHhcCCCCCEEEEcCCCC
Confidence            5321               111  12344446788999987554

>PRK07877 hypothetical protein; Provisional

Probab=94.19  E-value=0.14  Score=56.48  Aligned_cols=75  Identities=20%  Similarity=0.358  Sum_probs=52.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHH---------------HHHHHhcccCCCeEEEEeC-
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPG---------------VTADISHMDTGAVVRGFLG-   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g---------------~a~DL~~~~~~~~v~~~~~-   99 (390)
                      ..||.|+|+ | +|++++..|+..+.+.+|.|+|-|.     +.-               .+..+..+....+|+.+.. 
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~  184 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG  184 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            459999999 8 9999999999999778999999875     111               1222333333456666542 


Q ss_pred             --CCChhhhhCCCcEEEEcC
Q 016424          100 --QPQLENALTGMDLVIIPA  117 (390)
Q Consensus       100 --t~dl~~al~dADiVIi~a  117 (390)
                        .+++.+-++++|+||-+.
T Consensus       185 i~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        185 LTEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             CCHHHHHHHhcCCCEEEECC
Confidence              134555678999999875

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=94.18  E-value=0.2  Score=46.13  Aligned_cols=101  Identities=20%  Similarity=0.297  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHH-HHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcE
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDL  112 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~-~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADi  112 (390)
                      +..++.+|.|||+ |++|.+++. ....+.-..-+..+|+++ ..|      ...  ..+.++. -++++.-++  |.|+
T Consensus        80 g~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG------~~~--~~v~V~~-~d~le~~v~~~dv~i  149 (211)
T COG2344          80 GQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVG------TKI--GDVPVYD-LDDLEKFVKKNDVEI  149 (211)
T ss_pred             CCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhC------ccc--CCeeeec-hHHHHHHHHhcCccE
Confidence            4566789999999 999999984 555455566788999986 222      111  1233321 246666666  8888


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t  165 (390)
                      .|+|.  |              .....++++.+.+.+=++ |+++| |+.+.+
T Consensus       150 aiLtV--P--------------a~~AQ~vad~Lv~aGVkG-IlNFt-Pv~l~~  184 (211)
T COG2344         150 AILTV--P--------------AEHAQEVADRLVKAGVKG-ILNFT-PVRLQV  184 (211)
T ss_pred             EEEEc--c--------------HHHHHHHHHHHHHcCCce-EEecc-ceEecC
Confidence            88885  2              234668888888888888 46776 777664

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.17  E-value=0.15  Score=50.08  Aligned_cols=58  Identities=19%  Similarity=0.395  Sum_probs=46.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|+|||.|.-||.+++.+|...+-  .+.+++.                       .|.++.+.++.||+||.+.|
T Consensus       156 l~Gk~vvViGrS~iVG~Pla~lL~~~~a--tVt~chs-----------------------~t~~l~~~~~~ADIvI~AvG  210 (284)
T PRK14190        156 ISGKHVVVVGRSNIVGKPVGQLLLNENA--TVTYCHS-----------------------KTKNLAELTKQADILIVAVG  210 (284)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEeC-----------------------CchhHHHHHHhCCEEEEecC
Confidence            4568999999999999999999987763  5555431                       13578888999999999998


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       211 ~p~  213 (284)
T PRK14190        211 KPK  213 (284)
T ss_pred             CCC
Confidence            775

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.55  Score=44.14  Aligned_cols=77  Identities=21%  Similarity=0.291  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      .+.+.|+||+|++|..++..|+..+.  ++++.|.+.   ......++.+..  .++..+.. -+|   ..+++      
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   83 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE   83 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45889999999999999999998886  889999864   233344454322  22222221 112   22222      


Q ss_pred             -CCCcEEEEcCCCCC
Q 016424          108 -TGMDLVIIPAGVPR  121 (390)
Q Consensus       108 -~dADiVIi~ag~p~  121 (390)
                       ..-|++|..+|...
T Consensus        84 ~g~id~li~~ag~~~   98 (254)
T PRK06114         84 LGALTLAVNAAGIAN   98 (254)
T ss_pred             cCCCCEEEECCCCCC
Confidence             23599999998643

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.15  E-value=0.23  Score=49.64  Aligned_cols=93  Identities=27%  Similarity=0.373  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..+.+++.|||. |.||+.++..++-.+.  +|+.||.........++       ..+.    .++.+.++.||+|++..
T Consensus       143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~-------~~~y----~~l~ell~~sDii~l~~  208 (324)
T COG1052         143 DLRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKEL-------GARY----VDLDELLAESDIISLHC  208 (324)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhc-------Ccee----ccHHHHHHhCCEEEEeC
Confidence            355789999999 9999999999994454  99999987531111111       1222    13789999999999986


Q ss_pred             C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 G-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      . .|.    + ..++  |       .+.++...|++++||.+
T Consensus       209 Plt~~----T-~hLi--n-------~~~l~~mk~ga~lVNta  236 (324)
T COG1052         209 PLTPE----T-RHLI--N-------AEELAKMKPGAILVNTA  236 (324)
T ss_pred             CCChH----H-hhhc--C-------HHHHHhCCCCeEEEECC
Confidence            2 221    1 1111  1       23455567889999886

>PRK08177 short chain dehydrogenase; Provisional

Probab=94.15  E-value=0.18  Score=46.52  Aligned_cols=35  Identities=17%  Similarity=0.060  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +++|.|+||+|++|+.++..|+..+.  +|+++|.+.
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            35799999999999999999998876  899999876

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.14  E-value=0.098  Score=52.68  Aligned_cols=73  Identities=23%  Similarity=0.388  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .+.+||+|+||+|.+|..+...|...+ ...+|.++......|.-.+..    ...+..-  ..+ .+++.++|+||++.
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~----~~~~~v~--~~~-~~~~~~~D~vf~a~   77 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFE----GRDYTVE--ELT-EDSFDGVDIALFSA   77 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeec----CceeEEE--eCC-HHHHcCCCEEEECC
Confidence            345799999999999999998888754 356777665543222212121    1233321  123 35689999999987


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      +
T Consensus        78 p   78 (344)
T PLN02383         78 G   78 (344)
T ss_pred             C
Confidence            4

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=94.10  E-value=0.14  Score=54.58  Aligned_cols=103  Identities=18%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh-----CCC-----CcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENA  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~-----~~~-----~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~a  106 (390)
                      ..||++.|| |..|..++.+|..     .++     -..++++|.+.  ..+...+|.+..  +..+..   ...++.++
T Consensus       321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~  396 (581)
T PLN03129        321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA  396 (581)
T ss_pred             hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence            479999999 9999999976654     243     25899999986  111100021110  000111   12579999


Q ss_pred             hCC--CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          107 LTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       107 l~d--ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      +++  +|++|=+.+.|--              +-.++.+.|.++|++.+|+-.|||.
T Consensus       397 v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~~rPIIFaLSNPt  439 (581)
T PLN03129        397 VKAIKPTVLIGLSGVGGT--------------FTKEVLEAMASLNERPIIFALSNPT  439 (581)
T ss_pred             HhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCCC
Confidence            999  9999987665421              2347888888999999999999998

>PRK07109 short chain dehydrogenase; Provisional

Probab=94.10  E-value=1.4  Score=43.86  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l  107 (390)
                      +++|.|+||+|++|..++..|+..+.  +|++.+.++  ......++....  .++..+.+ -+|   .+++       +
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999998886  899999876  333444454322  23332221 122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...|++|..+|.....   ..+..   ..+..|    ....+.+.+.+.+. ..+.+++++
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~is  143 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVG  143 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeC
Confidence            3679999998864221   11222   223333    33444555555443 235566654

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.10  E-value=0.15  Score=52.12  Aligned_cols=77  Identities=16%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHH-HHH-hcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADI-SHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a-~DL-~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +.+++||+|+||+|.+|..+..+|...| ..+|.++..+...|.. .+. -+... ..+..+. ..+ .++++++|+|++
T Consensus        35 ~~~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~l~~-~~~~~~~-~~~-~~~~~~~DvVf~  110 (381)
T PLN02968         35 SEEKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPHLIT-QDLPNLV-AVK-DADFSDVDAVFC  110 (381)
T ss_pred             cccccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCccccC-cccccee-cCC-HHHhcCCCEEEE
Confidence            3456799999999999999999888886 3478887765422211 111 11111 1111111 112 244799999999


Q ss_pred             cCC
Q 016424          116 PAG  118 (390)
Q Consensus       116 ~ag  118 (390)
                      +.+
T Consensus       111 Alp  113 (381)
T PLN02968        111 CLP  113 (381)
T ss_pred             cCC
Confidence            763

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.09  E-value=0.23  Score=50.97  Aligned_cols=122  Identities=19%  Similarity=0.232  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH-H--HHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~-a--~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ||.|||. |+.|.+++..|...+.  ++...|....... .  ..+.. .  ..++.+.+ .+ .+.+.++|+||.+.|+
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~-~--~gi~~~~g-~~-~~~~~~~d~vv~sp~i   72 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRL-N--EGSVLHTG-LH-LEDLNNADLVVKSPGI   72 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhh-c--cCcEEEec-Cc-hHHhccCCEEEECCCC
Confidence            5889999 9999999999998887  8999998752111 1  11211 1  13343434 33 4668999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~  175 (390)
                      |...- .......++++++.+. +.+.+.. +..+|-+  ||==.++|.+++.+++..
T Consensus        73 ~~~~p-~~~~a~~~~i~i~~~~-e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~  127 (433)
T TIGR01087        73 PPDHP-LVQAAAKRGIPVVGDI-ELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAA  127 (433)
T ss_pred             CCCCH-HHHHHHHCCCcEEEHH-HHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            85422 1222234566666554 2233333 2234444  444456677777777664

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.06  E-value=0.59  Score=42.98  Aligned_cols=115  Identities=21%  Similarity=0.310  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeC-CCC---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENA------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a------  106 (390)
                      ++++|.|+||+|++|+.++..+...+.  ++++...+..   .....++....  .++..+.+ -+|   +.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346999999999999999999988875  6766655431   22333333211  22332211 112   1122      


Q ss_pred             -hCCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 016424          107 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLIS  158 (390)
Q Consensus       107 -l~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~t  158 (390)
                       +.+.|+||..+|.....   ..+..   ..+..|+.-...+.+.+..+.   +...+++++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~is  141 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINIS  141 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence             23689999998864322   12222   234566666666666665543   234555555

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.02  E-value=0.19  Score=49.34  Aligned_cols=78  Identities=18%  Similarity=0.355  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -...+|+|||.|.-||.+++.+|...+.  .+..++..                       |.++++.++.||+||.+.|
T Consensus       157 l~Gk~vvViGrs~iVG~Pla~lL~~~~a--tVtv~hs~-----------------------T~~l~~~~~~ADIvi~avG  211 (285)
T PRK10792        157 TYGLNAVVVGASNIVGRPMSLELLLAGC--TVTVCHRF-----------------------TKNLRHHVRNADLLVVAVG  211 (285)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHCCC--eEEEEECC-----------------------CCCHHHHHhhCCEEEEcCC
Confidence            3467999999955699999999987664  56555431                       3478888999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  161 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPv  161 (390)
                      .|.-               +..     ....|++++|-++ |++
T Consensus       212 ~p~~---------------v~~-----~~vk~gavVIDvGin~~  235 (285)
T PRK10792        212 KPGF---------------IPG-----EWIKPGAIVIDVGINRL  235 (285)
T ss_pred             Cccc---------------ccH-----HHcCCCcEEEEcccccc
Confidence            8752               000     2235888888775 653

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=94.01  E-value=0.15  Score=50.61  Aligned_cols=66  Identities=21%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +.+||+|||+ |.+|.+++..|...+.  +++.++....... ..+...  .  ++.   + +..+++++||+|+++.
T Consensus         2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~--G--v~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATED--G--FKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHC--C--CEE---C-CHHHHHhcCCEEEEeC
Confidence            3579999999 9999999999998886  5666554331111 111111  1  122   1 3568899999999987

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=93.99  E-value=0.25  Score=48.66  Aligned_cols=33  Identities=27%  Similarity=0.547  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||.|||+ |++|..++..|+..| +.+|+|+|-|.
T Consensus         1 kVlVVGa-GGlG~eilknLal~G-vg~I~IvD~D~   33 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLALSG-FRNIHVIDMDT   33 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcC-CCeEEEECCCE
Confidence            6899999 999999999999988 47999999874

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK06398 aldose dehydrogenase; Validated

Probab=93.97  E-value=0.1  Score=49.47  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .++|.|+||+|++|..++..|...+.  ++++.|.++
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~   40 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKE   40 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            46899999999999999999998886  888888875

>PRK05693 short chain dehydrogenase; Provisional

Probab=93.95  E-value=0.24  Score=47.09  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      |+++.|+||+|++|..++..+...+.  +|++.|.+.
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35789999999999999999988876  899999875

>PRK06125 short chain dehydrogenase; Provisional

Probab=93.93  E-value=3  Score=39.18  Aligned_cols=114  Identities=18%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh------hhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL------ENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl------~~al~dAD  111 (390)
                      .+++.|+|++|++|..++..|...+.  +|++.|.+.  ......++.... ..++..+.. -+|.      .+.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            46899999999999999999998876  899999876  233333444321 122332211 1221      11345789


Q ss_pred             EEEEcCCCCC-CCC--CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPR-KPG--MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~-k~g--~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++|..+|... .+-  .+..   ..+..|+.-    .+.+.+.+.+. ..+.+++++
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~is  139 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVI  139 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEec
Confidence            9999988643 221  2222   234555543    33444444433 235566654

>PLN02306 hydroxypyruvate reductase

Probab=93.93  E-value=0.34  Score=49.59  Aligned_cols=102  Identities=20%  Similarity=0.218  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCchHHHH---HHHhc-c--cCCCeEEEEeCCCChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISH-M--DTGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~~~g~a---~DL~~-~--~~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      -..++|.|||. |.||+.++..+. ..+.  ++..||........   ..... .  .....+... ...++++.++.||
T Consensus       163 L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~sD  238 (386)
T PLN02306        163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREAD  238 (386)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhCC
Confidence            34579999999 999999998875 4455  89999986421111   11110 0  000111111 1247899999999


Q ss_pred             EEEEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAG-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|++..- .+.-.|            ++-  .+.+...-|++++||++
T Consensus       239 iV~lh~Plt~~T~~------------lin--~~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        239 VISLHPVLDKTTYH------------LIN--KERLALMKKEAVLVNAS  272 (386)
T ss_pred             EEEEeCCCChhhhh------------hcC--HHHHHhCCCCeEEEECC
Confidence            9999642 221111            111  13445556899999997

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=93.91  E-value=0.06  Score=52.42  Aligned_cols=98  Identities=23%  Similarity=0.283  Sum_probs=57.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||.|+||+|.+|+.+...+...+.  +++.++...     .|+.+..   .++      ++-++. +-|+||.+++...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~~-~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEAF-KPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHHH---SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHHh-CCCeEeccceeec
Confidence            7999999999999999999988775  777776542     1222111   000      111222 4788888886542


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          122 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       122 k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..  ..........|......+++.+.+.  ++.+|.+|
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S  100 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS  100 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence            11  1234455677888888888888765  45666664

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.90  E-value=0.18  Score=49.44  Aligned_cols=59  Identities=20%  Similarity=0.389  Sum_probs=46.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-..++|+|||.|.-||.+++.+|.+.+.  .+...+.                       -|.|+++-++.||+||.+.
T Consensus       156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a--tVt~chs-----------------------~T~~l~~~~~~ADIvIsAv  210 (284)
T PRK14177        156 DVTGKNAVVVGRSPILGKPMAMLLTEMNA--TVTLCHS-----------------------KTQNLPSIVRQADIIVGAV  210 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEeC
Confidence            34567999999988999999999987763  5554441                       1457888899999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus       211 Gk~~  214 (284)
T PRK14177        211 GKPE  214 (284)
T ss_pred             CCcC
Confidence            8774

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.88  E-value=0.73  Score=45.02  Aligned_cols=79  Identities=28%  Similarity=0.425  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CC---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQ---LENA------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~a------  106 (390)
                      +.+++.|+||+|++|..++..|+..+.  ++++.|...   ....+.++...  ..++..+.+. +|   ..+.      
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~~   86 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAVG   86 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999998876  889999754   23334444332  2233333211 12   1111      


Q ss_pred             hCCCcEEEEcCCCCCC
Q 016424          107 LTGMDLVIIPAGVPRK  122 (390)
Q Consensus       107 l~dADiVIi~ag~p~k  122 (390)
                      +...|++|..+|..+.
T Consensus        87 ~g~iD~li~nAG~~~~  102 (306)
T PRK07792         87 LGGLDIVVNNAGITRD  102 (306)
T ss_pred             hCCCCEEEECCCCCCC
Confidence            2357999999997654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.85  E-value=0.19  Score=49.31  Aligned_cols=58  Identities=19%  Similarity=0.370  Sum_probs=45.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||.|.-||.+++.+|...+.  .+..++.                       -|.|+.+.++.||+||.+.|
T Consensus       162 l~Gk~vvViGrs~iVGkPla~lL~~~~a--tVtv~hs-----------------------~T~~l~~~~~~ADIvv~AvG  216 (287)
T PRK14176        162 IEGKNAVIVGHSNVVGKPMAAMLLNRNA--TVSVCHV-----------------------FTDDLKKYTLDADILVVATG  216 (287)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHCCC--EEEEEec-----------------------cCCCHHHHHhhCCEEEEccC
Confidence            4568999999966699999999987764  5555552                       13577788999999999999


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       217 ~p~  219 (287)
T PRK14176        217 VKH  219 (287)
T ss_pred             Ccc
Confidence            885

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.08  Score=49.82  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +.++|.|+||+|++|+.++..|+..+.  ++++.+.+.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            346899999999999999999998876  899999875

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.82  E-value=0.19  Score=54.35  Aligned_cols=36  Identities=28%  Similarity=0.293  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +..||.|+|| |++|+.++..|+.-| +.+|.|+|-+.
T Consensus       337 ~~~kVLIvGa-GGLGs~VA~~La~~G-Vg~ItlVD~D~  372 (664)
T TIGR01381       337 SQLKVLLLGA-GTLGCNVARCLIGWG-VRHITFVDNGK  372 (664)
T ss_pred             hcCeEEEECC-cHHHHHHHHHHHHcC-CCeEEEEcCCE
Confidence            3569999999 999999999999888 46899999874

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK12747 short chain dehydrogenase; Provisional

Probab=93.82  E-value=2.1  Score=40.00  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di   75 (390)
                      .+.+.|.||+|++|..++..|+..+.  ++++.+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            46899999999999999999998886  7777654

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=93.82  E-value=0.55  Score=43.12  Aligned_cols=112  Identities=17%  Similarity=0.272  Sum_probs=64.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-------C
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------G  109 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-------d  109 (390)
                      |.|+|++|++|+.++..|..++.  ++.+.+.+.   ......++.+..  .++..... -+|   +.++++       .
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999988876  788888764   223334444322  22322221 112   223332       3


Q ss_pred             CcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 016424          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  159 (390)
Q Consensus       110 ADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~tN  159 (390)
                      .|+||..+|.....   +.+.   ...+..|..-...+.+.+..+.   ..+.+++++-
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS  135 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISS  135 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            59999998864321   1122   2345667776666666665542   2345666653

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.81  E-value=0.47  Score=43.80  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+|.|+||+|++|+.++..+...+.  ++++.+.++
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999988886  899999876

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=93.80  E-value=0.48  Score=50.47  Aligned_cols=104  Identities=16%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHH-------HHHHhcccCCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGV-------TADISHMDTGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~-------a~DL~~~~~~~~v~~~~~t~d  102 (390)
                      ..||++.|| |..|..++.+|..    .++     -..++++|.+.  ....       -..+.+...... ..  ...+
T Consensus       297 d~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~-~~--~~~~  372 (559)
T PTZ00317        297 EQRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAE-DS--SLKT  372 (559)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccc-cc--cCCC
Confidence            479999999 9999999976653    443     26899999876  1111       112222110011 00  1247


Q ss_pred             hhhhhCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          103 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       103 l~~al~dA--DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      +.++++++  |++|=+.+.|--              +-+++.+.|.++|++.+|+-.|||..
T Consensus       373 L~e~v~~~KPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~~rPIIFaLSNPt~  420 (559)
T PTZ00317        373 LEDVVRFVKPTALLGLSGVGGV--------------FTEEVVKTMASNVERPIIFPLSNPTS  420 (559)
T ss_pred             HHHHHhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCCCC
Confidence            99999999  999977665421              23478889999999999999999983

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.80  E-value=0.92  Score=42.29  Aligned_cols=75  Identities=21%  Similarity=0.256  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH---HHHHHHhcccCCCeEEEEeC-CCChh---h-------hh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLG-QPQLE---N-------AL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~---g~a~DL~~~~~~~~v~~~~~-t~dl~---~-------al  107 (390)
                      ++|.|+||+|++|+.++..|+..+.  +++++|.....   ....++...  ..++..+.. -+|..   +       .+
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAHEAMLDAAQAAW   78 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4688889999999999999998876  89999975422   222233221  123333321 12211   1       12


Q ss_pred             CCCcEEEEcCCCC
Q 016424          108 TGMDLVIIPAGVP  120 (390)
Q Consensus       108 ~dADiVIi~ag~p  120 (390)
                      ...|+||..+|.+
T Consensus        79 ~~id~vi~~ag~~   91 (256)
T PRK12745         79 GRIDCLVNNAGVG   91 (256)
T ss_pred             CCCCEEEECCccC
Confidence            4689999999864

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.79  E-value=0.2  Score=49.19  Aligned_cols=60  Identities=23%  Similarity=0.457  Sum_probs=44.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||.|.-||.+++.+|....--..+.+...                       .|.++.+.++.||+||.+.|
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs-----------------------~T~~l~~~~k~ADIvV~AvG  212 (284)
T PRK14193        156 LAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHT-----------------------GTRDLAAHTRRADIIVAAAG  212 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCC-----------------------CCCCHHHHHHhCCEEEEecC
Confidence            3567999999999999999999876311124444332                       14578888999999999999


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       213 kp~  215 (284)
T PRK14193        213 VAH  215 (284)
T ss_pred             CcC
Confidence            874

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.72  E-value=0.19  Score=49.20  Aligned_cols=58  Identities=16%  Similarity=0.388  Sum_probs=45.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||.|.-||.+++.+|...+.  .+.+++.                       .|.|+++.++.||+||.+.|
T Consensus       155 l~Gk~vvVvGrS~iVGkPla~lL~~~~a--tVtichs-----------------------~T~~l~~~~~~ADIvI~AvG  209 (284)
T PRK14170        155 IEGKRAVVIGRSNIVGKPVAQLLLNENA--TVTIAHS-----------------------RTKDLPQVAKEADILVVATG  209 (284)
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEecC
Confidence            4567999999988999999999987663  5544422                       14577888999999999999


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       210 ~~~  212 (284)
T PRK14170        210 LAK  212 (284)
T ss_pred             CcC
Confidence            775

>PRK07201 short chain dehydrogenase; Provisional

Probab=93.70  E-value=0.82  Score=49.28  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      +++++.|+||+|++|..++..|+..+.  +|++++.+.  ......++....  .++..+.+ -+|   .+++++     
T Consensus       370 ~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  445 (657)
T PRK07201        370 VGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAE  445 (657)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999998886  899999876  233334443221  23333221 122   223333     


Q ss_pred             --CCcEEEEcCCCCCCCC--C------CHHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRKPG--M------TRDDLFNINAGIVRTLCEG----IAKCCPNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g--~------~r~~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~t  158 (390)
                        ..|++|..+|......  .      .-...+..|..-...+.+.    +.+. ..+.+++++
T Consensus       446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~is  508 (657)
T PRK07201        446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVS  508 (657)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEEC
Confidence              6899999998642211  1      1123355565544444333    3333 345666665

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=93.68  E-value=0.22  Score=49.98  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ++||+|+||+|.+|..++..|...+.+.-+.+.|.... +.......+........ +. ..+. .+.+++|+|+++.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~-~~-~~~~-~~~~~vD~Vf~al   76 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLV-LE-PLDP-EILAGADVVFLAL   76 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCce-ee-cCCH-HHhcCCCEEEECC
Confidence            57999999999999999988887765544566774321 11211111111101112 11 1121 2568999999975

>PRK08703 short chain dehydrogenase; Provisional

Probab=93.68  E-value=1.7  Score=40.18  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +++|.|+||+|++|..++..++..+.  +|+++|.+.
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            35899999999999999999998876  899999886

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=93.65  E-value=0.81  Score=49.29  Aligned_cols=82  Identities=16%  Similarity=0.116  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch----H--HHHHHHhcc-cCCCeEEEEe--CCCChhhhhC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----P--GVTADISHM-DTGAVVRGFL--GQPQLENALT  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~----~--g~a~DL~~~-~~~~~v~~~~--~t~dl~~al~  108 (390)
                      .++..||+|+|. |++|++++..|+..|+ .+++.+|.|..    .  +...++.+. .....++...  .+.|+.+.++
T Consensus       126 ~qR~akVlVlG~-Gg~~s~lv~sL~~sG~-~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~  203 (637)
T TIGR03693       126 LSRNAKILAAGS-GDFLTKLVRSLIDSGF-PRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFE  203 (637)
T ss_pred             hhhcccEEEEec-CchHHHHHHHHHhcCC-CcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhc
Confidence            346779999999 9999999999999884 46778877651    1  222333322 2223333322  3468899999


Q ss_pred             CCcEEEEcCCCCC
Q 016424          109 GMDLVIIPAGVPR  121 (390)
Q Consensus       109 dADiVIi~ag~p~  121 (390)
                      +.|+||..+.-|.
T Consensus       204 ~~DiVi~vsDdy~  216 (637)
T TIGR03693       204 PADWVLYVSDNGD  216 (637)
T ss_pred             CCcEEEEECCCCC
Confidence            9999999875443

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>PRK09134 short chain dehydrogenase; Provisional

Probab=93.63  E-value=1  Score=42.31  Aligned_cols=114  Identities=16%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-----  107 (390)
                      .++++.|+||+|++|..++..|...+.  .+++.+...   ......++.+..  .++..+.. -+|   +.+++     
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~   83 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASA   83 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999988775  777766543   222333333221  23333321 122   22222     


Q ss_pred             --CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEe
Q 016424          108 --TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLI  157 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~  157 (390)
                        ...|+||..+|.....   ..+.   ...+..|+.-...+.+.+..+.   ..+.++++
T Consensus        84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~  144 (258)
T PRK09134         84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM  144 (258)
T ss_pred             HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence              2469999999864321   1222   2345566654455555544432   23455544

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.63  E-value=0.6  Score=48.22  Aligned_cols=125  Identities=18%  Similarity=0.138  Sum_probs=73.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      .+||.|+|. |+.|.+.+..|...+-..++...|.....-....|..     .++.+.+..+ .+.+.++|+||.+.|+|
T Consensus         7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-----g~~~~~g~~~-~~~~~~~d~vV~SpgI~   79 (438)
T PRK04663          7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-----DVELHSGGWN-LEWLLEADLVVTNPGIA   79 (438)
T ss_pred             CceEEEEec-cHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-----CCEEEeCCCC-hHHhccCCEEEECCCCC
Confidence            468999999 9999988876666532237899998652111122421     3444334323 35688999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~  175 (390)
                      ...- .......++++++.++- .+.+..+ ..+|-+  ||==.+++.+++.+++..
T Consensus        80 ~~~p-~~~~a~~~gi~i~~~~e-l~~~~~~-~~~I~VTGTnGKTTTt~ll~~iL~~~  133 (438)
T PRK04663         80 LATP-EIQQVLAAGIPVVGDIE-LFAWAVD-KPVIAITGSNGKSTVTDLTGVMAKAA  133 (438)
T ss_pred             CCCH-HHHHHHHCCCcEEEHHH-HHHhhcC-CCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence            5422 12222345666665542 2222332 234444  444446667777777654

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.62  E-value=0.59  Score=48.12  Aligned_cols=124  Identities=18%  Similarity=0.162  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhC-CCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-dADiVIi~a  117 (390)
                      .++|.|+|+ |++|.+.+..|...+.  ++.+.|.+.  .......|...    .++.+.+. +..+.+. +.|+||.+.
T Consensus         5 ~k~v~v~G~-g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~----g~~~~~~~-~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          5 NKKVLVLGL-AKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEE----GIKVICGS-HPLELLDEDFDLMVKNP   76 (447)
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhc----CCEEEeCC-CCHHHhcCcCCEEEECC
Confidence            468999999 8899999999998886  899999865  22223334432    12222222 2223344 399999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~  175 (390)
                      |+|...- ........+++++.+.- ......+ ..+|-+  ||==.+++.+++.+++..
T Consensus        77 gi~~~~~-~~~~a~~~~i~v~~~~e-l~~~~~~-~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         77 GIPYTNP-MVEKALEKGIPIITEVE-LAYLISE-APIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             CCCCCCH-HHHHHHHCCCcEEeHHH-HHHHhcC-CCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            9885421 11122244556554432 1222222 223444  454456667777777664

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.60  E-value=0.23  Score=48.58  Aligned_cols=58  Identities=19%  Similarity=0.426  Sum_probs=46.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||.|.-||.+++.+|.+.+.  .+..++.                       -|.|+.+.++.||+||.++|
T Consensus       156 l~Gk~vvViGrS~~VGkPla~lL~~~~A--tVt~chs-----------------------~T~~l~~~~~~ADIvIsAvG  210 (278)
T PRK14172        156 IEGKEVVVIGRSNIVGKPVAQLLLNENA--TVTICHS-----------------------KTKNLKEVCKKADILVVAIG  210 (278)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEcCC
Confidence            4567999999988999999999987763  5555442                       13577788999999999999


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       211 kp~  213 (278)
T PRK14172        211 RPK  213 (278)
T ss_pred             CcC
Confidence            775

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.60  E-value=0.2  Score=49.37  Aligned_cols=59  Identities=22%  Similarity=0.384  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-+.++|+|||.|.-||.+++.+|.+.+.  .+..+.                       +-|.|+++.++.||+||.+.
T Consensus       155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~a--tVtv~h-----------------------s~T~~l~~~~~~ADIvIsAv  209 (297)
T PRK14186        155 DIAGKKAVVVGRSILVGKPLALMLLAANA--TVTIAH-----------------------SRTQDLASITREADILVAAA  209 (297)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCC--EEEEeC-----------------------CCCCCHHHHHhhCCEEEEcc
Confidence            34567999999988999999999987763  443331                       11457778899999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus       210 Gkp~  213 (297)
T PRK14186        210 GRPN  213 (297)
T ss_pred             CCcC
Confidence            9774

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=93.60  E-value=0.34  Score=48.34  Aligned_cols=93  Identities=18%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|.|||. |.||..++..+. ..+.  +++.||.........++       .++.    .++.+.++.||+|++..
T Consensus       143 L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~~----~~l~ell~~sDvv~lh~  208 (323)
T PRK15409        143 VHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NARY----CDLDTLLQESDFVCIIL  208 (323)
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcEe----cCHHHHHHhCCEEEEeC
Confidence            34579999999 999999998876 4454  88888875311111111       1221    26789999999999975


Q ss_pred             C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          118 G-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       118 g-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      . .|.-.+            ++-  .+.+....|++++||++-
T Consensus       209 plt~~T~~------------li~--~~~l~~mk~ga~lIN~aR  237 (323)
T PRK15409        209 PLTDETHH------------LFG--AEQFAKMKSSAIFINAGR  237 (323)
T ss_pred             CCChHHhh------------ccC--HHHHhcCCCCeEEEECCC
Confidence            2 121111            110  123445568999999973

>PRK06953 short chain dehydrogenase; Provisional

Probab=93.59  E-value=0.33  Score=44.63  Aligned_cols=112  Identities=17%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE--eCCCChhh---hhC--CCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF--LGQPQLEN---ALT--GMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~--~~t~dl~~---al~--dADiV  113 (390)
                      |+++.|+||+|++|+.++..|...+.  +++++|.+...  ..++....  ......  +...++.+   .+.  ..|+|
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~~d~v   74 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALG--AEALALDVADPASVAGLAWKLDGEALDAA   74 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcc--ceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence            35789999999999999998887775  89999987521  11222211  111110  00112222   133  37999


Q ss_pred             EEcCCCCC--C-C--CCCHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          114 IIPAGVPR--K-P--GMTRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~--k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      |.++|...  . +  ..+..   ..+..|..-...+.+.+..+-  ..+.+++++
T Consensus        75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~is  129 (222)
T PRK06953         75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLS  129 (222)
T ss_pred             EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEc
Confidence            99988752  1 1  12332   345566655555555554421  234455554

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.59  E-value=0.15  Score=51.05  Aligned_cols=75  Identities=25%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHH-H-HhcccCCCeEEEEeCCCChhh-hhCCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D-ISHMDTGAVVRGFLGQPQLEN-ALTGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~-D-L~~~~~~~~v~~~~~t~dl~~-al~dADiVIi~  116 (390)
                      +++||.|+||+|..|..+..+|...|.+. +.++...+..|... | .-|.....+++...  -|..+ ...+||+||++
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve-~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~--~~~~~~~~~~~DvvFla   77 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVE-LILISSRERAGKPVSDVHPNLRGLVDLPFQT--IDPEKIELDECDVVFLA   77 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeE-EEEeechhhcCCchHHhCccccccccccccc--CChhhhhcccCCEEEEe
Confidence            36899999999999999999999998554 88888765333222 2 11222112233321  12222 24569999997


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      -
T Consensus        78 l   78 (349)
T COG0002          78 L   78 (349)
T ss_pred             c
Confidence            3

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.57  E-value=0.58  Score=48.94  Aligned_cols=126  Identities=14%  Similarity=0.129  Sum_probs=76.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ..||.|+|. |.-|...+..|...+.  ++.++|.++.  .....+|.. .  .. ... +..+ .+.+.++|+||.+.|
T Consensus         8 ~~~v~v~G~-G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~-~--~~-~~~-~~~~-~~~~~~~d~vV~Spg   78 (468)
T PRK04690          8 GRRVALWGW-GREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALAD-A--AL-LVE-TEAS-AQRLAAFDVVVKSPG   78 (468)
T ss_pred             CCEEEEEcc-chhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhh-c--CE-EEe-CCCC-hHHccCCCEEEECCC
Confidence            458999999 9999999999998887  8999998652  112223433 1  11 112 2223 356889999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--C--CcEEEEe--cCCCcccHHHHHHHHHHhC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC--P--NATVNLI--SNPVNSTVPIAAEVFKKAG  176 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~--p--~a~iiv~--tNPvd~~t~i~ae~~~~~s  176 (390)
                      +|...-+ ......++++++.++--......  +  ...+|-+  ||==.++|.+++.+++..+
T Consensus        79 I~~~~p~-~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         79 ISPYRPE-ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             CCCCCHH-HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            9854221 22223566777765544333322  1  1223334  4544567777778876653

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=93.55  E-value=0.59  Score=53.47  Aligned_cols=73  Identities=21%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .+|.|+|+ |++|..++..|+..| +..|.|+|-+.                     +.+.+..|........++...+.
T Consensus        25 s~VLIiG~-gGLG~EiaKnL~laG-Vg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~  102 (1008)
T TIGR01408        25 SNVLISGM-GGLGLEIAKNLVLAG-VKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVP  102 (1008)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEeccc
Confidence            49999999 999999999999988 56899999763                     11112233333334556655432


Q ss_pred             CChhhhhCCCcEEEEcC
Q 016424          101 PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ~dl~~al~dADiVIi~a  117 (390)
                      -+ ++-+++.|+||.+.
T Consensus       103 l~-~e~l~~fdvVV~t~  118 (1008)
T TIGR01408       103 FN-EEFLDKFQCVVLTE  118 (1008)
T ss_pred             CC-HHHHcCCCEEEECC
Confidence            22 46789999999984

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.53  E-value=0.92  Score=42.15  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~   76 (390)
                      .++|.|+||+|++|+.++..|...+.  ++++.+.+
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            45899999999999999999988875  77776543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.53  E-value=0.84  Score=42.81  Aligned_cols=110  Identities=15%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEe-CCCC---hhhh-------hCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~a-------l~d  109 (390)
                      .+++.|+||+|++|..++..|...+.  ++++.+.... ....++.+..    +..+. .-+|   +.++       +..
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~----~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKG----VFTIKCDVGNRDQVKKSKEVVEKEFGR   79 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCC----CeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999998886  7777765431 1222332211    11111 1112   2222       235


Q ss_pred             CcEEEEcCCCCCC-C--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k-~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .|+||..+|.... +  ..+..   ..+..|+.-    .+.+.+.+.+. ..+.|++++
T Consensus        80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~is  137 (255)
T PRK06463         80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIA  137 (255)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            7999999987532 1  12222   234445433    45555555433 345666665

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.52  E-value=0.69  Score=41.23  Aligned_cols=68  Identities=12%  Similarity=0.080  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +.+||.|||| |.||...+..|...+.  ++++++.+-.... .++.      .++.....-+ ++.+.++|+||.+.+
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~l-~~l~------~i~~~~~~~~-~~dl~~a~lViaaT~   79 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKEM-KELP------YITWKQKTFS-NDDIKDAHLIYAATN   79 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHHH-Hhcc------CcEEEecccC-hhcCCCceEEEECCC
Confidence            3569999999 9999999998888776  8888875432222 2232      1111111111 356899999999753

>PRK07577 short chain dehydrogenase; Provisional

Probab=93.51  E-value=0.33  Score=44.72  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .++|.|+||+|++|..++..+...+.  ++++.+.+.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999998885  899998875

>PRK06153 hypothetical protein; Provisional

Probab=93.50  E-value=0.094  Score=53.47  Aligned_cols=35  Identities=37%  Similarity=0.671  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..||+|||+ |++|+.++..|+..+ +.+|+|+|-|.
T Consensus       176 ~~~VaIVG~-GG~GS~Va~~LAR~G-VgeI~LVD~D~  210 (393)
T PRK06153        176 GQRIAIIGL-GGTGSYILDLVAKTP-VREIHLFDGDD  210 (393)
T ss_pred             hCcEEEEcC-CccHHHHHHHHHHcC-CCEEEEECCCE
Confidence            469999999 999999999999988 47999999885

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.49  E-value=0.87  Score=39.48  Aligned_cols=115  Identities=19%  Similarity=0.226  Sum_probs=72.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhhh
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENAL  107 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~al  107 (390)
                      .+.|+||+|++|..++..+...+ ...+++++.++    ......++.+.  ..++..+... ++          ..+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g-~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRG-ARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcC-ceEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            57889999999999999998883 34788999882    23333444422  2444444311 11          12234


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      ..-|++|..+|......   ++.   ...+..|+....-+.+.+.. .+.+.|+++|-..
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~  137 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA  137 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence            58899999998766221   111   23466676666667777776 5577788776433

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.47  E-value=0.22  Score=48.73  Aligned_cols=58  Identities=28%  Similarity=0.472  Sum_probs=45.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|+|||.|.-||.+++.+|...+-  .+.....                       -|.|+++.++.||+||.+.|
T Consensus       154 l~Gk~vvViGrS~iVGkPla~lL~~~~a--tVtichs-----------------------~T~~l~~~~~~ADIvI~AvG  208 (282)
T PRK14169        154 VAGKRVVIVGRSNIVGRPLAGLMVNHDA--TVTIAHS-----------------------KTRNLKQLTKEADILVVAVG  208 (282)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEECC-----------------------CCCCHHHHHhhCCEEEEccC
Confidence            4567999999988999999999987653  4443321                       14577888999999999999


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       209 ~p~  211 (282)
T PRK14169        209 VPH  211 (282)
T ss_pred             CcC
Confidence            775

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.45  E-value=0.25  Score=48.62  Aligned_cols=59  Identities=17%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-..++|+|||.|.-||.+++.+|.+.+-  .+.+++.                       -|.|+++-++.||+||.+.
T Consensus       157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a--TVt~chs-----------------------~T~~l~~~~~~ADIvVsAv  211 (294)
T PRK14187        157 NLSGSDAVVIGRSNIVGKPMACLLLGENC--TVTTVHS-----------------------ATRDLADYCSKADILVAAV  211 (294)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHhhCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEcc
Confidence            34567999999988999999999987653  4544442                       1357778899999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus       212 Gkp~  215 (294)
T PRK14187        212 GIPN  215 (294)
T ss_pred             CCcC
Confidence            9775

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.44  E-value=0.49  Score=48.89  Aligned_cols=127  Identities=13%  Similarity=0.124  Sum_probs=75.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      .--|.|+|. |+.|.+++..|...+.  ++...|.........+|...  ...++.+.+..+ .+.+.++|+||.+.|+|
T Consensus         6 ~~~~~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~l~~~--~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~   79 (448)
T PRK03803          6 DGLHIVVGL-GKTGLSVVRFLARQGI--PFAVMDSREQPPGLDTLARE--FPDVELRCGGFD-CELLVQASEIIISPGLA   79 (448)
T ss_pred             CCeEEEEee-cHhHHHHHHHHHhCCC--eEEEEeCCCCchhHHHHHhh--cCCcEEEeCCCC-hHHhcCCCEEEECCCCC
Confidence            346899999 9999998889988886  89999987521111224321  123444443334 36688999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHh
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKA  175 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~~~~  175 (390)
                      ...-+ ......++++++.++-- +.+..+.-+|.|. ||==.++|.+++.+++..
T Consensus        80 ~~~p~-~~~a~~~~i~i~~~~el-~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  133 (448)
T PRK03803         80 LDTPA-LRAAAAMGIEVIGDIEL-FAREAKAPVIAITGSNGKSTVTTLVGEMAKAA  133 (448)
T ss_pred             CCCHH-HHHHHHCCCcEEEHHHH-HHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            64221 12223445666653311 1122222233333 455557777887877664

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.43  E-value=0.42  Score=49.28  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+..||.|||| |-+|.-++..|...+. .+|.+.....  ..+.+|.+-.. ..+..+   +++.+.+.++|+||.+.|
T Consensus       176 L~~~~vlvIGA-Gem~~lva~~L~~~g~-~~i~IaNRT~--erA~~La~~~~-~~~~~l---~el~~~l~~~DvVissTs  247 (414)
T COG0373         176 LKDKKVLVIGA-GEMGELVAKHLAEKGV-KKITIANRTL--ERAEELAKKLG-AEAVAL---EELLEALAEADVVISSTS  247 (414)
T ss_pred             cccCeEEEEcc-cHHHHHHHHHHHhCCC-CEEEEEcCCH--HHHHHHHHHhC-CeeecH---HHHHHhhhhCCEEEEecC
Confidence            35679999999 9999999999998884 6888888754  33344443221 233322   467899999999999877


Q ss_pred             CCC
Q 016424          119 VPR  121 (390)
Q Consensus       119 ~p~  121 (390)
                      .|.
T Consensus       248 a~~  250 (414)
T COG0373         248 APH  250 (414)
T ss_pred             CCc
Confidence            664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	390
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-159
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-148
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-89
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		6e-89
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		3e-79
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		4e-79
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		6e-78
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		2e-75
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		5e-19
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		7e-17
1guz_A	310	Structural Basis For Thermophilic Protein Stability		1e-16
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		2e-16
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		9e-16
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		7e-15
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		7e-15
1guy_A	309	Structural Basis For Thermophilic Protein Stability		7e-15
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-14
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		2e-14
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		3e-14
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		1e-11
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		1e-11
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		1e-11
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		1e-11
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		1e-11
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		2e-11
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		9e-11
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		9e-11
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		1e-10
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-10
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-10
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		1e-10
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		1e-10
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		1e-10
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		1e-10
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		4e-10
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		4e-10
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		5e-10
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		5e-10
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		8e-10
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		1e-09
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-09
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		2e-09
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		2e-09
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		2e-09
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		6e-09
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		3e-08
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		2e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		1e-05
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		1e-05
1bmd_A	327	Determinants Of Protein Thermostability Observed In		1e-05
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		1e-05
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		1e-05
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-05
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		3e-05
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		3e-05
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-05
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-05
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		3e-05
1ldb_A	317	Structure Determination And Refinement Of Bacillus		4e-05
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		4e-05
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		5e-05
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		5e-05
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		5e-05
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		8e-05
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		1e-04
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		1e-04
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		2e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		3e-04
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		3e-04
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		5e-04
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		6e-04
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		6e-04
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		8e-04
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		8e-04
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		8e-04
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		8e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 283/359 (78%), Positives = 302/359 (84%), Gaps = 6/359 (1%)
Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+   + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 178 YDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAE                HAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300
Query: 298 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHS 356
           QVTELPFFASKVRLGR G EE++ LGPLNEYE      L    ++  G  E+ VS+  S
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYER---IGLEKAKKELAGSIEKGVSFIRS 356

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  522 bits (1345), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/323 (81%), Positives = 277/323 (85%), Gaps = 3/323 (0%)
Query: 34  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 93
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 153
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXX 213
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAE             
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 214 XXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 273
              HAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 274 KFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           KFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYE    
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYER--- 297
Query: 334 CLLHLCFQDWLGESEERVSWKHS 356
             L    ++  G  E+ VS+  S
Sbjct: 298 IGLEKAKKELAGSIEKGVSFIRS 320

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/291 (55%), Positives = 208/291 (71%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E  + 
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMI 292

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  324 bits (830), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 161/291 (55%), Positives = 207/291 (71%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
           ST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 269
Query: 283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           + G  GVVEC+FV SQ TE  +F++ + LG++G E+   +G ++ +E  + 
Sbjct: 270 MNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMI 320

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  292 bits (747), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/309 (53%), Positives = 204/309 (66%), Gaps = 6/309 (1%)
Query: 42  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 99
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 279
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 280 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE-SGLFCLLHL 338
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E + L  +L  
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 339 CFQDW-LGE 346
             +D  LGE
Sbjct: 299 LKKDIALGE 307

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  291 bits (745), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/290 (54%), Positives = 195/290 (67%), Gaps = 4/290 (1%)
Query: 42  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 99
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 279
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 280 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFE 288

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  287 bits (735), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/290 (54%), Positives = 194/290 (66%), Gaps = 4/290 (1%)
Query: 42  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 99
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           PVN+TV IAAEV KKAG YD  KL GVT LD++ +NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 279
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 280 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFE 288

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  279 bits (713), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/289 (53%), Positives = 195/289 (67%), Gaps = 5/289 (1%)
Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPG  R DLFN+NAGIV++L E IA  CPNA + +I+NP
Sbjct: 65  DPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGV 220
           VN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TFVAE                H+GV
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 221 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 280
           TILPLLSQV+    F+ EE   LT RIQN GTEVVEAKAG GSATLS   AA +F  A +
Sbjct: 184 TILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 281 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
           + L+G+  V+E A+V        FFA  V+LG++G EEI   G L+++E
Sbjct: 243 KALQGEE-VIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFE 290

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 123/255 (48%), Gaps = 27/255 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VRG 96
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T  +      VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                 LEN+    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CPNA V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXX 216
           I+NP++  V     + K +G  D K +    +LD  R  TF+A+                
Sbjct: 121 ITNPLDIXV---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGG 177
Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
           H G T +PL          L Q+       QE  + + +R ++GG E+V A    GSA  
Sbjct: 178 H-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYY 235
Query: 267 SMAYAAVKFADACLR 281
           + A A ++ A++ L+
Sbjct: 236 APAAAGIQXAESFLK 250

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 136/306 (44%), Gaps = 50/306 (16%)
Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 101
            K+ ++GA G +G   A  +    L   L L DVV        +   +TG V  G     
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLF--- 54
Query: 102 QLENALTGM---------DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
             +  +TG          D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N 
Sbjct: 55  --DTKITGSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNP 112
Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
            + ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A           
Sbjct: 113 IIIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDIN 167
Query: 211 XXXXXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
                 H  A V ++   +    P S     E  + L  R +NGG E+VE     GSA  
Sbjct: 168 ACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFY 226
Query: 267 SMAYAAVKFADA----------CLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 316
           + A + V+  ++          C  GL G  G+           +  F    V+LGR G 
Sbjct: 227 APASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGV 275
Query: 317 EEIFQL 322
           E+I+++
Sbjct: 276 EQIYEI 281

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 135/303 (44%), Gaps = 44/303 (14%)
Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VR 95
            K+ ++GA G +G   A  +    L   L L DVV        +   ++G V      V 
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 96  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           G        N+    D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + 
Sbjct: 60  GSNDYADTANS----DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIII 115
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXX 213
           ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A              
Sbjct: 116 VVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACV 170
Query: 214 XXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269
              H  A V ++   +    P S     E  + L  R +NGG E+VE     GSA  + A
Sbjct: 171 LGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPA 229
Query: 270 YAAVKFADA----------CLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 319
            + V+  ++          C  GL G  G+           +  F    V+LGR G E+I
Sbjct: 230 SSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQI 278
Query: 320 FQL 322
           +++
Sbjct: 279 YEI 281

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 19/231 (8%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + +++NPV++   +   
Sbjct: 80  DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYS 136
Query: 171 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 228
           VFK+AG +  ++++G + +LD  R  TF+A+                H G  ++PL+   
Sbjct: 137 VFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 229 ----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 284
               +       +E  E +  R + GG E+V    G GSA  + A + V+  +A L+  R
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 285 G---DAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGL 332
                   +E  +  S +    +    V LG  G E+I +L  L + +  L
Sbjct: 254 RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIELELLADEKEAL 300

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 27/261 (10%)
Query: 37  GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVV 94
           G  A  K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     + V
Sbjct: 3   GSMARNKIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPV 57
Query: 95  RGFLGQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 151
            GF  +    N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P 
Sbjct: 58  DGFDAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPE 117
Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
           A V  I+NP+++ V       +K       K++G+  +LD  R   F++E          
Sbjct: 118 AFVICITNPLDAMV----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVT 173
Query: 211 XXXXXXHAGVTI----------LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 260
                 H    +          +PL   VK   + +Q++ + +  R ++GG E+V     
Sbjct: 174 VFVLGGHGDSMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLK 231
Query: 261 AGSATLSMAYAAVKFADACLR 281
            GSA  + A +A++ A++ L+
Sbjct: 232 TGSAFYAPAASAIQMAESYLK 252

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 16/230 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFST 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 285
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 286 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E  L 
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALL 292

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 16/230 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFST 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 285
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 286 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E  L 
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALL 292

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 16/230 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFST 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 285
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 286 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E  L 
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALL 292

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH----MDTGAVVRG 96
           K++I+GA G IG  +A+L+    L  V +++D++     G   D++H    + + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                 L+N+    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR 193
           I+NP+++ V      FK+       K+ G++ +LD  R
Sbjct: 130 ITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSAR 163

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 16/230 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSC 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 285
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 286 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E  L 
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALL 292

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 134/295 (45%), Gaps = 28/295 (9%)
Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VR 95
            K+ ++GA G +G   A  +    L   L L DVV        +   ++G V      V 
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 96  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           G        N+    D+V+I AG+PRKPGMTR+DL ++NAGIVR +   I +   N  + 
Sbjct: 60  GSNDYADTANS----DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIV 115
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXX 213
           ++SNP++    +A   ++K+G   PK +++G+  +LD  R  +F+A              
Sbjct: 116 VVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACV 170
Query: 214 XXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269
              H  A V ++   +    P +   + E    L  R + GG E+V      GSA  S A
Sbjct: 171 LGGHGDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPA 229
Query: 270 YAAVKFADACLRGLRGDAGVVECA--FVASQVTELPFFASKVRLGRQGAEEIFQL 322
            + V+  ++ +   +    V+ CA         +  F    V+LG+ G E I+++
Sbjct: 230 TSVVEMVESIVLDRK---RVLTCAVSLDGQYGIDGTFVGVPVKLGKNGVEHIYEI 281

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 214
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 215 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 265 TLSMAYAAVKFADACLR 281
             + A +A+  A A L+
Sbjct: 242 YYAPALSAITMAQAFLK 258

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 96
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 211 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 256
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 96
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 124 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 179
Query: 211 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 256
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 180 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 234

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 96
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMXE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 211 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 256
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 214
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 215 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 265 TLSMAYAAVKFADACLR 281
             + A +A+  A A L+
Sbjct: 242 YYAPALSAITMAQAFLK 258

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +    F K    DP+K+ G  T+LD  R  T +A+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQ 155

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 140/312 (44%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 177
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 233
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 234 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 290
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 291 L-QLNSEEKAKF 301

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 137/306 (44%), Gaps = 35/306 (11%)
Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTGAVVRGFLGQ 100
           + ILGA G +G   A+++ +     +L +      P G   D++H   + G  +R   G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
              E+ + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +NP
Sbjct: 60  NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           V++   +   ++KK G +  ++++G + +LD  R   ++++                H  
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 220 VTI-LPLLSQVKP-PCS--FTQEETEYLTNRIQNGGTEVVEAKAGAG----SATLSMAYA 271
               +P LS V   P     ++EE E + +   N G ++ E +  +     +A L +   
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTVE 234
Query: 272 AVKFADACLR----GLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNE 327
           A+K     +      L+G+ G  +       V E+P       +G+ G E I +L PL E
Sbjct: 235 AIKRDSKRIYPYSLYLQGEYGYNDI------VAEVPAV-----IGKSGIERIIEL-PLTE 282
Query: 328 YESGLF 333
            E   F
Sbjct: 283 DEKRKF 288

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 18/220 (8%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 171 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPL---- 225
               A  +   +++G+  +LD  R  +F+AE                H G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 226 -LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 284
            +  +  P        E +  R +  G E+V+      SA  +   AA +  +A    L+
Sbjct: 186 TVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAAAAEMTEAI---LK 240
Query: 285 GDAGVVECAFVASQVTELP--FFASKVRLGRQGAEEIFQL 322
            +  ++ CA        L   F    V+LG  G EE+ ++
Sbjct: 241 DNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV 280

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 140/312 (44%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 177
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 233
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 234 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 290
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 291 L-QLNSEEKAKF 301

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 140/312 (44%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 292 L-QLNSEEKAKF 302

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 140/312 (44%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 292 L-QLNSEEKAKF 302

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 39/291 (13%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 250 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 306
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGRVLPASVKLEGEFGHEDTAFG 262
Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSK 357
             VRLG  G EEI +   L++YE           QD + ++ E++S ++ K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYE-----------QDLMADAAEKLSDQYDK 301

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 39/291 (13%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 250 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 306
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSK 357
             VRLG  G EEI +   L++YE           QD + ++ E++S ++ K
Sbjct: 264 VPVRLGSNGVEEIVEW-DLDDYE-----------QDLMADAAEKLSDQYDK 302

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 39/291 (13%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 250 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 306
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSK 357
             VRLG  G EEI +   L++YE           QD + ++ E++S ++ K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYE-----------QDLMADAAEKLSDQYDK 301

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTGAVVRGFLG 99
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAE 200
           P++    +    F+K       K+ G+  +LD  R  TF+A+
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQ 160

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 20/234 (8%)
Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADISHMDTGAVVRGF 97
            KV I+GA+G +G   A+L+   P +  L L    + +    G+  DI     G      
Sbjct: 1   MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 98  LGQPQLEN--ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           +     EN   +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C +  + 
Sbjct: 61  IYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF 119
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 214
           +I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+              
Sbjct: 120 VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRII 175
Query: 215 XXHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
             H G +++PLLS        ++    F +   + +   ++  G +++  K G+
Sbjct: 176 GEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTGAVVRGFLG 99
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAE 200
           P++    +    F+K       K+ G+  +LD  R  TF+A+
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQ 160

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 128/313 (40%), Gaps = 43/313 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H         F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG------LPFMGQ 61
Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXX 215
           +SNPV+    I   + +K       K++G  T+LD +R    ++E               
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 216 XHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
            H G + LPL S               P C+FT+E+ + +   ++  G  +++ K   G+
Sbjct: 178 EH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA 233
Query: 264 ATLSMAYAAVKFADACLRG---LRGDAGVVECAF-VASQVTELPFFASKVRLGRQGAEEI 319
               +A +     +  L+    +R    V+   + +      LP   +      +G +E+
Sbjct: 234 TYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSIVN-----SEGVQEV 288
Query: 320 FQLGPLNEYESGL 332
            Q     E E  L
Sbjct: 289 LQFNLTPEEEEAL 301

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTGAVVRGFLG- 99
           K+ I+GAAG IG  +A    +  L   L LYD   V   GV  +I H        GF G 
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-------GFEGL 62
Query: 100 ----QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-V 154
                  ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V
Sbjct: 63  NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHV 122
Query: 155 NLISNPVNST 164
            +I NP + T
Sbjct: 123 IIIFNPADIT 132

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 141/312 (45%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ ++DVV N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNCKVTG 62
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I   CPNA + 
Sbjct: 63  SNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFII 122
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   +F+ +G   PK K++G+  +LD  R   ++++             
Sbjct: 123 VVTNPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALI 177
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      T EE E + +R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIPLQEFINNK-KITDEEVEGIFDRTVNTALEIVNLLA---S 233
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ L+ ++    V+ C+  +  Q      F  + + +G  G E++ +
Sbjct: 234 PYVAPAAAIIEMAESYLKDIK---KVLVCSTLLEGQYGHSNIFGGTPLVIGGTGVEQVIE 290
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 291 L-QLNAEEKTKF 301

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 139/312 (44%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG +     R DL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 292 L-QLNSEEKAKF 302

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 39/291 (13%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 250 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 306
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSK 357
             V LG  G EEI +   L++YE           QD + ++ E++S ++ K
Sbjct: 263 VPVSLGSNGVEEIVEW-DLDDYE-----------QDLMADAAEKLSDQYDK 301

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 39/291 (13%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 250 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 306
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSK 357
             V LG  G EEI +   L++YE           QD + ++ E++S ++ K
Sbjct: 264 VPVSLGSNGVEEIVEW-DLDDYE-----------QDLMADAAEKLSDQYDK 302

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 140/312 (44%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L   D+VI+ AG  + PG +     RDDL  +N  I+  +   I   CPNA + 
Sbjct: 64  SNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      T +E + + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNK-KITDQELDAIFDRTINTALEIVNLHA---S 234
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFA-SKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ +R LR    V+ C+  +  Q      FA + + +G  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYIRDLR---KVLICSTLLEGQYGHKDIFAGTPLVIGGNGVEQVIE 291
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 292 L-QLNADEKKKF 302

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 36/312 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 214 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
              H    +L          PL   +      +  E E + +R  N   E+V   A   +
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---A 234
Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 321
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 322 LGPLNEYESGLF 333
           L  LN  E   F
Sbjct: 292 L-QLNSEEKAKF 302

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 50  AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL-----E 104
           AG +G   A    +N  V  + L D+     V      MD      G    P++      
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG---EAMDLAHAAAGIDKYPKIVGGADY 64
Query: 105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 164
           + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP++  
Sbjct: 65  SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVM 124
Query: 165 VPIAAEVFKKAG 176
             I   ++K++G
Sbjct: 125 TYI---MWKESG 133

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 30  QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD 89
           +A+ +  G  +  KVA+ GAAG IG  L  L+    L+           P    ++  +D
Sbjct: 13  EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLG----------PTTPVELRLLD 62
Query: 90  TGAVVRGFLG-QPQLEN-----------------ALTGMDLVIIPAGVPRKPGMTRDDLF 131
               ++   G + +LE+                 A  G+ + I+    PRK GM R DL 
Sbjct: 63  IEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLL 122
Query: 132 NINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGVTML 189
            +NA I +   E IA     +  V ++ NP N+   I   + K A G  +P+ +  +T L
Sbjct: 123 EMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRL 179
Query: 190 DVVRANTFVA 199
           D  RA + +A
Sbjct: 180 DHNRALSLLA 189

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 167 IAAEV 171
           +A ++
Sbjct: 125 LATQL 129

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 133/325 (40%), Gaps = 31/325 (9%)
Query: 41  GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVR 95
           G KV ++G  G +G   A  +    +V  L + D+ +T  V  D+  +      +   VR
Sbjct: 6   GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 96  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
              G+    +     DLV+I AG  +KPG TR DL + N  I +++   +     +    
Sbjct: 64  VKAGE---YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXX 215
           + +NPV+    +A   +K +G    + +   T+LD  R    ++E               
Sbjct: 121 VATNPVD---ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIG 177
Query: 216 XHAGVTILPLLSQV----KPPCSFTQE------ETEYLTNRIQNGGTEVVEAKAGAGSAT 265
            H G T LP+ S      +P  +  ++      + E +  + ++   ++++AK   G+  
Sbjct: 178 EH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATY 233
Query: 266 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP-FFASKVRLGRQGAEEIFQLGP 324
             +A    +  +A  R    DA +   A +  +  E   +      + R G   + ++ P
Sbjct: 234 YGVAMGLARITEAIFRN--EDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-P 290
Query: 325 LNEYESGLFCLLHLCFQDWLGESEE 349
           LN+ E   F       +D + E+EE
Sbjct: 291 LNDEEQSKFAHSAKTLKDIMAEAEE 315

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 40  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 88
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 89  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 148
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 149 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 40  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 88
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 89  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 148
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 149 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 132/325 (40%), Gaps = 31/325 (9%)
Query: 41  GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-----VVR 95
           G KV ++G  G +G   A  +    +V  L + D+ +T  V  D+  +          VR
Sbjct: 6   GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 96  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
              G+    +     DLV+I AG  +KPG TR DL + N  I +++   +     +    
Sbjct: 64  VKAGE---YSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXX 215
           + +NPV+    +A   +K +G    + +   T+LD  R    ++E               
Sbjct: 121 VATNPVD---ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIG 177
Query: 216 XHAGVTILPLLSQV----KPPCSFTQE------ETEYLTNRIQNGGTEVVEAKAGAGSAT 265
            H G T LP+ S      +P  +  ++      + E +  + ++   ++++AK   G+  
Sbjct: 178 EH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATY 233
Query: 266 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP-FFASKVRLGRQGAEEIFQLGP 324
             +A    +  +A  R    DA +   A +  +  E   +      + R G   + ++ P
Sbjct: 234 YGVAMGLARITEAIFRN--EDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-P 290
Query: 325 LNEYESGLFCLLHLCFQDWLGESEE 349
           LN+ E   F       +D + E+EE
Sbjct: 291 LNDEEQSKFAHSAKTLKDIMAEAEE 315

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 40  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 88
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 89  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 148
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 149 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NPV+    IA  
Sbjct: 77  DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 171 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           V +K       ++ G  T LD  R    +A+
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQ 163

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 23/245 (9%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 171 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQV 229
              K   +   +++G  T LD  R    +AE                H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 230 K----PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 285
                    + +   E   +++     +V +A           AY  +K   A   G+  
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDA-----------AYEIIKLKGATFYGIAT 241
Query: 286 DAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG 345
               +  A +  +   LP   S    G+ G  +I+   P     +G+  +L +   D   
Sbjct: 242 ALARISKAILNDENAVLPL--SVYMDGQYGLNDIYIGTPAVINRNGIQNILEIPLTDHEE 299
Query: 346 ESEER 350
           ES ++
Sbjct: 300 ESMQK 304

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 101 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 101 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 94/245 (38%), Gaps = 42/245 (17%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 228
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 229 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA--- 276
                    V+      Q++ E +   +++   +++E K GA    ++M  A V  A   
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGLARVTRAILH 250
Query: 277 --------DACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 328
                    A L GL G+  V              +      + R G  E+ ++  LN+ 
Sbjct: 251 NENAILTVSAYLDGLYGERDV--------------YIGVPAVINRNGIREVIEI-ELNDD 295
Query: 329 ESGLF 333
           E   F
Sbjct: 296 EKNRF 300

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 94/245 (38%), Gaps = 42/245 (17%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 228
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 229 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA--- 276
                    V+      Q++ E +   +++   +++E K GA    ++M  A V  A   
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGLARVTRAILH 250
Query: 277 --------DACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 328
                    A L GL G+  V              +      + R G  E+ ++  LN+ 
Sbjct: 251 NENAILTVSAYLDGLYGERDV--------------YIGVPAVINRNGIREVIEI-ELNDD 295
Query: 329 ESGLF 333
           E   F
Sbjct: 296 EKNRF 300

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD 129

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 121/309 (39%), Gaps = 32/309 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           K+ ++G  G +G   A+ + +  L   L L D  +T  +  +   +  G++   FL  P+
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDA-DTDKLRGEALDLQHGSL---FLSTPK 75
Query: 103 L-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
           +      N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + ++
Sbjct: 76  IVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVV 135
Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXX 216
           +NPV+    I   V  K   +   +++G    LD  R    + E                
Sbjct: 136 TNPVD----ILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGE 191
Query: 217 HAGVTILPLLSQVK---------PPCSFTQEETEYLTN---RIQNGGTEVVEAKAGAGSA 264
           H G + +P+ S V           P   T +  ++  N   ++  GG EV++ K   G  
Sbjct: 192 H-GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYT 247
Query: 265 TLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGP 324
           + ++  +    A + L+ L+    V         + E  F +    LG  G  +  ++  
Sbjct: 248 SWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNM 307
Query: 325 LNEYESGLF 333
             E E GL 
Sbjct: 308 TAE-EEGLL 315

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA--V 93
           +VA+ GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNA 152
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+    + 
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
            V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 26/233 (11%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG P++PG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 171 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 228
              K   +   +++G  T LD  R    +AE                H G T  P+ S  
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 229 ----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 278
                     VK      +++   +   +++   E+++ K   G+    +A A  + + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 279 CLRGLRGDAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYE 329
            L     +A +    ++  Q  + +L +  +   + R G + I ++ PL ++E
Sbjct: 249 ILND--ENAVLPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-PLTDHE 297

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSG-LPPGRVVGSGTILDTARFRALLAE 155

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSG-LPPGRVVGSGTILDTARFRALLAE 155

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSG-LPPGRVVGSGTILDTARFRALLAE 155

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 128/314 (40%), Gaps = 43/314 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQH---GSL---FLRT 73
Query: 101 PQLENALTGMD--------LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
           P++   ++G D        LVII AG  ++ G +R +L   N  I + +   + K  P+ 
Sbjct: 74  PKI---VSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHC 130
Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXX 211
            + ++SNPV+    I   V  K   +   +++G    LD  R    + E           
Sbjct: 131 KLLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHG 186
Query: 212 XXXXXH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
                H             AGV++  L  ++       +E+ + +  ++ +   EV++ K
Sbjct: 187 WILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDAD--KEQWKQVHKQVVDSAYEVIKLK 244
Query: 259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEE 318
              G  T ++  +    A++ ++ LR    +         + E  F +    LG+ G  +
Sbjct: 245 ---GYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISD 301
Query: 319 IFQLGPLNEYESGL 332
           + ++   +E E+ L
Sbjct: 302 VVKVTLTSEEEAHL 315

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   +  +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YALSG-LPPGRVVGSGTILDTARFRALLAE 155

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQH---GSL---FLRT 74
Query: 101 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++      N      LV+I AG  ++ G +R +L   N  I + +   I K  PN  + 
Sbjct: 75  PKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLL 134
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 135 VVSNPVDILTYVAWKI 150

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 103 LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 217
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH 178
Query: 218 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 267 SMAYAAV 273
           +M+ A +
Sbjct: 237 AMSLARI 243

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 103 LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 217
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178
Query: 218 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 267 SMAYAAV 273
           +M+ A +
Sbjct: 237 AMSLARI 243

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGI-AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 178
           PR PGM R DL +IN  I     + + A   PN  V ++ NP N+   I     K A   
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 179 DPKKLLGVTMLDVVRA 194
            PK    +T LD  RA
Sbjct: 186 PPKNFHALTRLDENRA 201

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73
Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 74
Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 75  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 134
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 135 IVSNPVDILTYVAWKI 150

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTGAVVRG 96
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                +  +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+  + +
Sbjct: 82  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 157 ISNPVNSTVPIAAEV 171
           +SNPV+    +A ++
Sbjct: 137 VSNPVDVLTYVAWKL 151

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTGAVVRG 96
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                +  +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+  + +
Sbjct: 81  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 157 ISNPVNSTVPIAAEV 171
           +SNPV+    +A ++
Sbjct: 136 VSNPVDVLTYVAWKL 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-177
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-171
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-165
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	3e-50
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	1e-43
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	8e-42
3tl2_A	315	Malate dehydrogenase; center for structural genomi	2e-41
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	3e-41
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	6e-41
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	7e-41
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	1e-40
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-40
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	5e-40
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	3e-39
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	3e-39
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	7e-39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	1e-37
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	1e-37
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	3e-37
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	4e-37
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	7e-37
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	8e-37
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	8e-37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	9e-37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	2e-36
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-36
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	4e-36
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	8e-35
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-34
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	1e-33
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	2e-33
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	4e-33
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	5e-33
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	1e-32
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	1e-31
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-31
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	4e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	2e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	1e-05

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  495 bits (1277), Expect = e-177
 Identities = 273/300 (91%), Positives = 283/300 (94%)

Query: 34  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 93
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 153
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 213
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 214 VGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 273
           VGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240

Query: 274 KFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           KFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYE    
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  480 bits (1238), Expect = e-171
 Identities = 171/291 (58%), Positives = 220/291 (75%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 283 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E  + 
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMI 292

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  464 bits (1197), Expect = e-165
 Identities = 166/293 (56%), Positives = 206/293 (70%), Gaps = 4/293 (1%)

Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 220
           VN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 221 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 280
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 281 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E    
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL 292

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  171 bits (435), Expect = 3e-50
 Identities = 74/305 (24%), Positives = 117/305 (38%), Gaps = 25/305 (8%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ I+GAAG IG  +A    +  L   L LYD       GV  +I     G         
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEI--RHCGFEGLNLTFT 67

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISN 159
             ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218
           P + T  +       +G   P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 219 GVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           G  +             L+ +      T E+   L  R+  GG  +++ +    S+  S 
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240

Query: 269 AYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 328
           +Y +++   A + G           +V     E    A +  + + G +        NE 
Sbjct: 241 SYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEA 298

Query: 329 ESGLF 333
           E    
Sbjct: 299 ERAAL 303

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  152 bits (387), Expect = 1e-43
 Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 50/314 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDTGAVVRGFL 98
           KV+++GAAG +G      + +  +   +   D+ +    T    AD +H         + 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55

Query: 99  GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154
              ++         G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +   
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPV 213
              SNPV+    +      +AG    ++++G    LD  R    ++E      ++V+  +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 214 VGGHAGVTILPLLSQV----KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269
           +G H G   +P+ S+V      P  F+ +E E L   +Q    +V+E K   G+     A
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDP-EFSGDEKEQLLGDLQESAMDVIERK---GATEWGPA 226

Query: 270 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 319
                  +A L            L G+ G  +             F   V LG  G EEI
Sbjct: 227 RGVAHMVEAILHDTGEVLPASVKLEGEFGHEDT-----------AFGVPVSLGSNGVEEI 275

Query: 320 FQLGPLNEYESGLF 333
            +   L++YE  L 
Sbjct: 276 VEW-DLDDYEQDLM 288

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  148 bits (375), Expect = 8e-42
 Identities = 72/318 (22%), Positives = 132/318 (41%), Gaps = 50/318 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGF- 97
           KV I+GA+G +G   A+L+   P +  L L    +      G+  DI             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD---ALAGTRSD 58

Query: 98  ----LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 153
               +   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    
Sbjct: 59  ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK- 117

Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP 212
           + +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   +V   
Sbjct: 118 IFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTR 173

Query: 213 VVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265
           ++G H G +++PLLS        ++    F +   + +   ++  G +++  K   G + 
Sbjct: 174 IIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSE 229

Query: 266 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 315
              A A +      +            + G+   +    +      +P     V++GR G
Sbjct: 230 FGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIG-----VP-----VKIGRDG 279

Query: 316 AEEIFQLGPLNEYESGLF 333
            EE+  +  L++ E   F
Sbjct: 280 IEEVVSI-ELDKDEIIAF 296

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  147 bits (373), Expect = 2e-41
 Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 46/314 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDTGAVVRGFL 98
           KV+++GA G  G   A L+    L  V+ L D+      T     D+      + V+GF 
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLE---ASPVQGFD 64

Query: 99  GQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                 +        D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + 
Sbjct: 65  ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           +++NPV+           K   +  ++++G   +LD  R  TF+A+ L L  +D+   V+
Sbjct: 125 VLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180

Query: 215 GGHAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269
           GGH G  ++PL+        P  +   +E  E +  R + GG E+V    G GSA  + A
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPA 238

Query: 270 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 319
            + V+  +A L+           L G+ G  +            +    V LG  G E+I
Sbjct: 239 ASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-----------YLGVPVILGGNGIEKI 287

Query: 320 FQLGPLNEYESGLF 333
            +L  L   E    
Sbjct: 288 IEL-ELLADEKEAL 300

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  146 bits (372), Expect = 3e-41
 Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 44/312 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++GA G +G  +A  +    +   + + D+ +    G   D+      + + GF  +
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE---SSPIHGFDTR 57

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N        D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ ++
Sbjct: 58  VTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++    +   V  +A  +   +++G+  +LD  R  +F+AE L +  RDV   ++GG
Sbjct: 118 ANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 271
           H G T++PL         P          E +  R +  G E+V+      SA  +   A
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAA 230

Query: 272 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 321
           A +  +A L+             G+ G+ +            F    V+LG  G EE+ +
Sbjct: 231 AAEMTEAILKDNKRILPCAAYCDGEYGLDDL-----------FIGVPVKLGAGGVEEVIE 279

Query: 322 LGPLNEYESGLF 333
           +  L+  E    
Sbjct: 280 V-DLDADEKAQL 290

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  145 bits (369), Expect = 6e-41
 Identities = 89/312 (28%), Positives = 144/312 (46%), Gaps = 43/312 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++GA G +G   A  +    L   L L DVV     G   D+        V  F  +
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYE---SGPVGLFDTK 57

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N        D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++
Sbjct: 58  VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           SNP++    I   V         ++++G+  +LD  R  +F+A  LG+  +D++  V+GG
Sbjct: 118 SNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 271
           H G  ++P++        P       E  + L  R +NGG E+VE     GSA  + A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASS 231

Query: 272 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 321
            V+  ++ +            L G  G+ +          +P     V+LGR G E+I++
Sbjct: 232 VVEMVESIVLDRKRVLPCAVGLEGQYGIDKTFV------GVP-----VKLGRNGVEQIYE 280

Query: 322 LGPLNEYESGLF 333
           +  L++ +  L 
Sbjct: 281 I-NLDQADLDLL 291

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  145 bits (369), Expect = 7e-41
 Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 44/312 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K++I+GA G +G   A  +    L  ++ L D+V     G   D+      + + GF  +
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYE---ASPIEGFDVR 58

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N        D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + ++
Sbjct: 59  VTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 118

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++        +  +   +  ++++G   +LD  R  TF+A   G+   DV   ++GG
Sbjct: 119 NNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGG 174

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 271
           H G  ++PL         P   F   +    +  R + GG E+V      GSA  + A A
Sbjct: 175 H-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAA 232

Query: 272 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 321
             +  +A L+           L G  G+ +  F       +P     V LG  G E+I +
Sbjct: 233 TAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIYF------GVP-----VILGAGGVEKILE 281

Query: 322 LGPLNEYESGLF 333
           L PLNE E  L 
Sbjct: 282 L-PLNEEEMALL 292

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  144 bits (367), Expect = 1e-40
 Identities = 77/314 (24%), Positives = 131/314 (41%), Gaps = 51/314 (16%)

Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQP 101
           + ILGA G +G   A+++ +     +L L         G   D++H    A   G   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAH---AAAELGVDIRI 56

Query: 102 QLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
              N    + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +
Sbjct: 57  SGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116

Query: 159 NPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH 217
           NPV+        V  K   +  ++++G   +LD  R   ++++ LG+  + V+  V+G H
Sbjct: 117 NPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH 172

Query: 218 AGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGA-----GSATLS 267
            G  + P+         P     ++EE E + +   N G ++ E +  +      +  + 
Sbjct: 173 -GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVL 231

Query: 268 MAYAAVKFAD--------ACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 319
              A  +  D          L+G  G   +         V E+P       +G+ G E I
Sbjct: 232 TVEAIKR--DSKRIYPYSLYLQGEYGYNDI---------VAEVP-----AVIGKSGIERI 275

Query: 320 FQLGPLNEYESGLF 333
            +L PL E E   F
Sbjct: 276 IEL-PLTEDEKRKF 288

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  144 bits (366), Expect = 2e-40
 Identities = 98/317 (30%), Positives = 143/317 (45%), Gaps = 49/317 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K++I+GA G IG  +A+L+    L  V  ++D++     G   D++H      + G   +
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNH---CMALIGSPAK 70

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
              EN    L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  I
Sbjct: 71  IFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI 130

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++         FK+       K+ G+  +LD  R    ++  LG+ P DV   VVGG
Sbjct: 131 TNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG 186

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
           H G  ++PL          LS        T  +   +  +   GG E+VE     GSA  
Sbjct: 187 H-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFY 244

Query: 267 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 316
           + A +AV  A A L+           L G   V              F    V +G+ G 
Sbjct: 245 APAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-----------FVGVPVVIGKNGI 293

Query: 317 EEIFQLGPLNEYESGLF 333
           E++  +  L++ E  LF
Sbjct: 294 EDVVIV-NLSDDEKSLF 309

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  143 bits (363), Expect = 5e-40
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 49/317 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H     V+ G   +
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITH---SMVMFGSTSK 60

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               +    ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I
Sbjct: 61  VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICI 120

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++    +    F+K       K+ G+  +LD  R  TF+A+  G++  DV   V+GG
Sbjct: 121 TNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
           H G  ++P           LS        TQE+ + +    +    EV +     G+A  
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYF 234

Query: 267 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 316
           + A AAVK A+A L+                GV            +P       +G+ G 
Sbjct: 235 APAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGIYM------GVP-----TIIGKNGV 283

Query: 317 EEIFQLGPLNEYESGLF 333
           E+I +L  L   E  L 
Sbjct: 284 EDILEL-DLTPLEQKLL 299

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  141 bits (359), Expect = 3e-39
 Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 49/317 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+     + V GF  +
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P A V  I
Sbjct: 64  FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++          +K       K++G+  +LD  R   F++E   +   DV V V+GG
Sbjct: 124 TNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
           H G +++PL          L  +      +Q++ + +  R ++GG E+V      GSA  
Sbjct: 180 H-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFY 237

Query: 267 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 316
           + A +A++ A++ L+           L G  GV +          +P       +G  G 
Sbjct: 238 APAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMYV------GVP-----TVIGANGV 286

Query: 317 EEIFQLGPLNEYESGLF 333
           E I ++  L++ E   F
Sbjct: 287 ERIIEI-DLDKDEKAQF 302

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  141 bits (358), Expect = 3e-39
 Identities = 91/323 (28%), Positives = 141/323 (43%), Gaps = 55/323 (17%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--- 97
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH      V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSH---VTSVVDTNVS 65

Query: 98  -LGQPQLENALTGMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 210
             + +++NP++       +V  +A       + G+  MLD  R   +VA+ L + PRDV 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 211 VPVVGGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAG 260
             V+G H G  ++PL+  +                T+++ E +    +  G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 261 AGSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVR 310
            GSA  + A +AV  A + L              G+ G+ +          LP       
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDMFI------GLP-----AV 288

Query: 311 LGRQGAEEIFQLGPLNEYESGLF 333
           +G  G E + +L  LNE E   F
Sbjct: 289 IGGAGIERVIEL-ELNEEEKKQF 310

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  140 bits (356), Expect = 7e-39
 Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 50/318 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+        + G   +
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQ---TCPIEGVDFK 61

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
            +  N    L   D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CPNA V  I
Sbjct: 62  VRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI 121

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++    I   + +K       K++G+  +LD  R  TF+A+ L +  + V   V+GG
Sbjct: 122 TNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGG 177

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
           H G T++PL          L Q+       QE  + + +R ++GG E+V      GSA  
Sbjct: 178 H-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYY 235

Query: 267 SMAYAAVKFADACLRGLR-----------GDAGVVECAFVASQVTELPFFASKVRLGRQG 315
           + A A ++ A++ L+  +           G  G+ E  FV      +P       +   G
Sbjct: 236 APAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVG-----VP-----TEISANG 285

Query: 316 AEEIFQLGPLNEYESGLF 333
              I ++  +++ E    
Sbjct: 286 VRPI-EV-EISDKEREQL 301

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  137 bits (348), Expect = 1e-37
 Identities = 84/324 (25%), Positives = 138/324 (42%), Gaps = 60/324 (18%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH     V+     +
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSH---TNVMAYSNCK 60

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 152
               N    L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 61  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 211
            + +++NPV+    +  ++  +       K++G+  +LD  R   ++++ L + PRDV+ 
Sbjct: 121 FIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176

Query: 212 PVVGGHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
            +VG H G  ++ L          L +       +  E E + +R  N   E+V   A  
Sbjct: 177 HIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHASP 235

Query: 262 ----GSATLSMAYAAVKFAD--------ACLRGLRGDAGVVECAFVASQVTELPFFASKV 309
                +A + MA + +K  D          L G  G + +             P     V
Sbjct: 236 YVAPAAAIIEMAESYLK--DLKKVLICSTLLEGQYGHSDI---------FGGTP-----V 279

Query: 310 RLGRQGAEEIFQLGPLNEYESGLF 333
            LG  G E++ +L  LN  E   F
Sbjct: 280 VLGANGVEQVIEL-QLNSEEKAKF 302

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  137 bits (347), Expect = 1e-37
 Identities = 68/319 (21%), Positives = 120/319 (37%), Gaps = 54/319 (16%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           +V ++GA G +G      +    +   + L D       G   D +H   G V   F  +
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH---GKV---FAPK 60

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P              DLV+I AG  +KPG TR DL + N  I R++ E +          
Sbjct: 61  PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           + +NPV+    I      K      ++++G  T+LD  R    + E   + P++V   ++
Sbjct: 121 VATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII 176

Query: 215 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           G H        +   I  +P+   V+      Q++ E +   +++   +++E K   G+ 
Sbjct: 177 GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GAT 233

Query: 265 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 314
              +A    +   A L            L G  G  +          +P       + R 
Sbjct: 234 YYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYI------GVP-----AVINRN 282

Query: 315 GAEEIFQLGPLNEYESGLF 333
           G  E+ ++  LN+ E   F
Sbjct: 283 GIREVIEI-ELNDDEKNRF 300

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  136 bits (344), Expect = 3e-37
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 54/318 (16%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  M    +     + DVV   T G   D+           F   
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED---AQA---FTAP 59

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
            ++     +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
            +NPV+    I      K   +  ++++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 216 GHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265
            H G +     S                  + ++   L + ++N   +++  K   G+  
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231

Query: 266 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 315
             +  A ++ + A LR           + G  G+ +           P       +G  G
Sbjct: 232 YGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIYI------GTP-----AIIGGTG 280

Query: 316 AEEIFQLGPLNEYESGLF 333
            ++I +  PL+  E    
Sbjct: 281 LKQIIES-PLSADELKKM 297

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  136 bits (344), Expect = 4e-37
 Identities = 72/319 (22%), Positives = 123/319 (38%), Gaps = 54/319 (16%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GA G +G   A  +    +   L + DV      G   D++H   G     F  Q
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH---GKA---FAPQ 59

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P   +          D+V I AG  +KPG TR +L   N  I + +   +     +    
Sbjct: 60  PVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL 119

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           + +NPV+    I      K      ++++G  T LD  R    ++E  G  P++V   ++
Sbjct: 120 VATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII 175

Query: 215 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           G H        +   +  +P+   V+   ++ QEE + + + ++N    ++E K   G+ 
Sbjct: 176 GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GAT 232

Query: 265 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 314
              +A +  +   A L            L G  G  +          +P       + R 
Sbjct: 233 YYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVYI------GVP-----AVVNRG 281

Query: 315 GAEEIFQLGPLNEYESGLF 333
           G   I +L  LNE E   F
Sbjct: 282 GIAGITEL-NLNEKEKEQF 299

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  135 bits (342), Expect = 7e-37
 Identities = 68/318 (21%), Positives = 127/318 (39%), Gaps = 53/318 (16%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         F   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN---ALP---FTSP 63

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
            ++     +     DLV+I AG P+KPG TR DL N N  I++++ + I     N    +
Sbjct: 64  KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
            +NPV+    I      K   +   +++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 216 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265
            H        +   I  + +   VK      +++   +   +++   E+++ K   G+  
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATF 236

Query: 266 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 315
             +A A  + + A L            + G  G+ +           P       + R G
Sbjct: 237 YGIATALARISKAILNDENAVLPLSVYMDGQYGLNDIYI------GTP-----AVINRNG 285

Query: 316 AEEIFQLGPLNEYESGLF 333
            + I ++ PL ++E    
Sbjct: 286 IQNILEI-PLTDHEEESM 302

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  134 bits (341), Expect = 8e-37
 Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 53/318 (16%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ I+G  G +G   A  + +      + L DV      G   D+ H   G     F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH---GTP---FTRR 54

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             +       L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
           ++NPV+    +    F K    DP+K+ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 216 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265
            H        +G  I  +PL +  +       +  E    + +    E++E K   G+  
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATH 227

Query: 266 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 315
            ++A A     ++              L    GV +          +P     V LG+ G
Sbjct: 228 YAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLCI------SVP-----VTLGKHG 276

Query: 316 AEEIFQLGPLNEYESGLF 333
            E I +L  LNE E   F
Sbjct: 277 VERILEL-NLNEEELEAF 293

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  134 bits (341), Expect = 8e-37
 Identities = 68/319 (21%), Positives = 121/319 (37%), Gaps = 55/319 (17%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H         +   
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKH---ATP---YSPT 60

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                A         DLV+I AG  +KPG TR DL + N  I +++   +     +    
Sbjct: 61  TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           + +NPV+    I A    K      ++++G  T+LD  R    ++E   + PR VD  ++
Sbjct: 121 VATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176

Query: 215 GGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           G H G T LP+ S                   + + E +  + ++   ++++AK   G+ 
Sbjct: 177 GEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT 232

Query: 265 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 314
              +A    +  +A  R           L G+    +          +P       + R 
Sbjct: 233 YYGVAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDVY--IG----VP-----AVINRN 281

Query: 315 GAEEIFQLGPLNEYESGLF 333
           G   + ++ PLN+ E   F
Sbjct: 282 GIRNVVEI-PLNDEEQSKF 299

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  134 bits (341), Expect = 9e-37
 Identities = 66/322 (20%), Positives = 119/322 (36%), Gaps = 58/322 (18%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++GA G +G  LA       +   + L D+          D+ H   G+    F   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQH---GSS---FYPT 61

Query: 101 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
             ++           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   
Sbjct: 62  VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           LI+NPV+    IA  V +K       ++ G  T LD  R    +A+  G++ ++V   + 
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177

Query: 215 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
           G H              GV +               ++ E +   ++N   +++  K   
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWTPLPGHDP-LDADKREEIHQEVKNAAYKIINGK--- 233

Query: 262 GSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRL 311
           G+   ++  + V   +A L            L+   G+ +          +P       L
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDICM------SVP-----TLL 282

Query: 312 GRQGAEEIFQLGPLNEYESGLF 333
            RQG        P+++ E    
Sbjct: 283 NRQGVNNTINT-PVSDKELAAL 303

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  134 bits (340), Expect = 2e-36
 Identities = 68/321 (21%), Positives = 133/321 (41%), Gaps = 56/321 (17%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           ++SNPV+    I   V  K   +   +++G    LD  R    + E LG+ P      V+
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189

Query: 215 GGHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 262
           G H G + +P+ S V            +      +E+ + +  ++ +   EV++ K   G
Sbjct: 190 GEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---G 245

Query: 263 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 312
             + ++  +    A++ ++           ++G  G+ E  F++     +P       LG
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLS-----VP-----CILG 295

Query: 313 RQGAEEIFQLGPLNEYESGLF 333
           + G  ++ ++  L   E    
Sbjct: 296 QNGISDVVKV-TLTPDEEARL 315

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  133 bits (338), Expect = 2e-36
 Identities = 65/320 (20%), Positives = 114/320 (35%), Gaps = 56/320 (17%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV I+G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
            +NPV+    +  +V        P +++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 216 GHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263
            H G + + + S                  + + E+   +   ++     ++E K   G+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GA 226

Query: 264 ATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGR 313
               +     +   A L                AGV+E +        LP       LG 
Sbjct: 227 TYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVAGVLEVSL------SLP-----RILGA 275

Query: 314 QGAEEIFQLGPLNEYESGLF 333
            G         L+  E    
Sbjct: 276 GGVAGTVYP-SLSPEERAAL 294

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  133 bits (336), Expect = 4e-36
 Identities = 79/321 (24%), Positives = 134/321 (41%), Gaps = 58/321 (18%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H   G     F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH---GLP---FMGQ 61

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
           +SNPV+    I   + +K       K++G  T+LD +R    ++E LG+D ++V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 216 GH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 262
            H             AG  I   +   K    FT+E+ + +   ++  G  +++ K   G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCN--FTEEDKKKIAEDVKTAGATIIKNK---G 232

Query: 263 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 312
           +    +A +     +  L+           + G  G+ + A        LP       + 
Sbjct: 233 ATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAI------SLP-----SIVN 281

Query: 313 RQGAEEIFQLGPLNEYESGLF 333
            +G +E+ Q   L   E    
Sbjct: 282 SEGVQEVLQF-NLTPEEEEAL 301

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  129 bits (326), Expect = 8e-35
 Identities = 53/301 (17%), Positives = 99/301 (32%), Gaps = 48/301 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTGAVVRG--FLG 99
           K+ ++G  G +G    + +    +   L L D+   T G T D+   +   V        
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-- 72

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
                +A     +VI           +  D+   N  + R L   +     ++ + + S 
Sbjct: 73  -----SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 218
           P    V I   V  K  T+   +++G+   LD  R    +  VL       +V V+G   
Sbjct: 127 P----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ- 181

Query: 219 GVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 278
           G   +   S  +         +     ++ N   E++  K   G  + S+  +     D+
Sbjct: 182 GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDS 232

Query: 279 CLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 328
            +             +G   +    F++     LP       LG  G  E+ +   L E 
Sbjct: 233 IVNNKKKVHSVSALAKGYYDINSEVFLS-----LP-----CILGTNGVSEVIKT-TLKED 281

Query: 329 E 329
            
Sbjct: 282 T 282

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  129 bits (327), Expect = 1e-34
 Identities = 67/316 (21%), Positives = 117/316 (37%), Gaps = 41/316 (12%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 91
           +V + GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 92  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 150
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 151 NAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            +  V ++ NP N+    A+   K A +   +    +T LD  RA   +A  LG+   DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 210 DVPVVGGHAGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
              ++ G+   T  P ++            V                 +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGR 313
               SA +S A A          G     G      + S      V +   ++  V +  
Sbjct: 238 -KLSSA-MSAAKAICDHVRDIWFG--TPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKD 293

Query: 314 QGAEEIFQLGPLNEYE 329
           +  + +  L P+N++ 
Sbjct: 294 KTWKIVEGL-PINDFS 308

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  126 bits (318), Expect = 1e-33
 Identities = 68/313 (21%), Positives = 114/313 (36%), Gaps = 48/313 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  + +    S L L D           DI+H             
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
            ++     + L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + +
Sbjct: 55  TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
            SNPV+    +  ++  +     P   ++G  T+LD  R    +A+  G+D       V+
Sbjct: 115 TSNPVD----LLTDLATQ---LAPGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 215 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
           G H             AG+ +   +     P  + ++    +    +N    ++E K   
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQNLP--WNEQVRAKIDEGTRNAAASIIEGK--- 222

Query: 262 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIF 320
            +    +  A  +  +A LR  R          V++   E     S    +GRQG     
Sbjct: 223 RATYYGIGAALARITEAVLRDRR------AVLTVSAPTPEYGVSLSLPRVVGRQGVLSTL 276

Query: 321 QLGPLNEYESGLF 333
               L   E    
Sbjct: 277 HP-KLTGDEQQKL 288

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  127 bits (320), Expect = 2e-33
 Identities = 64/313 (20%), Positives = 104/313 (33%), Gaps = 38/313 (12%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 91
            +A+ GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 92  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 150
              +R              +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 151 -NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            N  V ++ NP N+   I     K A     K    +T LD  RA   +A   G+    V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 210 DVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 262
               + G+   T +P           VK     T+   E  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 263 SATLSMAYAAVKFADACLRGLRGDAG-VVECAFVASQ-----VTELPFFASKVRLGRQGA 316
           SA  S A +      + +       G       V +      + E   F+   R    G 
Sbjct: 266 SA-ASTAVSIADAIKSLVTP--TPEGDWFSTG-VYTTGNPYGIAEDIVFSMPCRSKGDGD 321

Query: 317 EEIFQLGPLNEYE 329
            E+      +++ 
Sbjct: 322 YELATDVSNDDFL 334

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  125 bits (316), Expect = 4e-33
 Identities = 78/310 (25%), Positives = 122/310 (39%), Gaps = 35/310 (11%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----G 91
           +VA+ GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQA-MKALEGVVMELEDCAF 62

Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 151
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 152 AT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD 210
              V ++ NP N+   IA    K A   +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 211 VPVVGGHAGVTILPLLSQV----KPPCSFTQEE--TEYLTNRIQNGGTEVVEAKAGAGSA 264
              V G+   T+ P L       +P       E   +     +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

Query: 265 TLSMAYAAVK-FADACLRGLRGDAGVVECAFVASQ----VTELPFFASKVRLGRQGAEEI 319
             S A AA++   D  L    GD   V  A V SQ    + E   ++  V   + GA  +
Sbjct: 239 -ASAANAAIEHIRDWALGTPEGD--WVSMA-VPSQGEYGIPEGIVYSFPVT-AKDGAYRV 293

Query: 320 FQLGPLNEYE 329
            +   +NE+ 
Sbjct: 294 VEGLEINEFA 303

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  124 bits (314), Expect = 5e-33
 Identities = 65/309 (21%), Positives = 124/309 (40%), Gaps = 50/309 (16%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    A        
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH---AAAGIDK--Y 55

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++        L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + 
Sbjct: 56  PKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKIL 115

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           +++NP++    +   +  K       ++ G+   LD  R    +      + R     ++
Sbjct: 116 VVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--II 169

Query: 215 GGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 274
           G H G ++    S         + + E + N ++    EV++ K   G+     A A  +
Sbjct: 170 GEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR 222

Query: 275 FADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGP 324
              A +            L+G+ G+                    +LG+ GA E+  +  
Sbjct: 223 MVKAVVEDTGEIIPTSMILQGEYGIENV-----------AVGVPAKLGKNGA-EVADI-K 269

Query: 325 LNEYESGLF 333
           L++ E    
Sbjct: 270 LSDEEIEKL 278

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  124 bits (313), Expect = 1e-32
 Identities = 64/253 (25%), Positives = 96/253 (37%), Gaps = 31/253 (12%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 89
           +VA+ GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 90  TGA-VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 148
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 149 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPR 207
              N  V ++ NP N+   IA    K A +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 208 DVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 260
            ++   V G+   T+             VK   +      +     +   G  +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238

Query: 261 AGSATLSMAYAAV 273
             SA  S A AA+
Sbjct: 239 VSSA-ASAANAAI 250

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  121 bits (305), Expect = 1e-31
 Identities = 49/252 (19%), Positives = 88/252 (34%), Gaps = 25/252 (9%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G    +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEH---GSL---FLHT 75

Query: 101 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
            ++      +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+    
Sbjct: 76  AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           L             +   K       +++G    LD  R    + E LG+    V   V+
Sbjct: 136 LHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191

Query: 215 GGHAGVTILPLLSQV---KPPCSF--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269
           G H G ++  + S +   K       +  E   L          VV       +      
Sbjct: 192 GQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKG 250

Query: 270 YAAVKFADACLR 281
            +    A   ++
Sbjct: 251 CSVADLAQTIMK 262

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  120 bits (303), Expect = 2e-31
 Identities = 60/311 (19%), Positives = 105/311 (33%), Gaps = 42/311 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ I+G  G +G  +A  +    +       D           D             L  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDA------MANLEA 55

Query: 101 PQLENA-----LTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPN 151
                      L   D+VI   G  +     P   R       + +V+++   + +   +
Sbjct: 56  HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115

Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 210
             + +ISNPV+    +   +F+    +   K++G  T+LD  R    V E   LDPR V 
Sbjct: 116 GVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVS 171

Query: 211 VPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN---RIQNGGTEVVEAKAGAGS 263
              +G H G +     S V    +P  +        L       + GG  V+  K   G 
Sbjct: 172 GYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GY 227

Query: 264 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIFQL 322
            +  +A +A++ A A +              V+++  ++  + S    +GR G      L
Sbjct: 228 TSYGVATSAIRIAKAVMADAH------AELVVSNRRDDMGMYLSYPAIIGRDGVLAETTL 281

Query: 323 GPLNEYESGLF 333
             L   E    
Sbjct: 282 -DLTTDEQEKL 291

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.7 bits (128), Expect = 4e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 40  AGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTG 91
              K+ I+GA G        ++ L K   L  S + L D+    ++     A     + G
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 140
           A ++ F     L++ +   D VI  A V     + +        G  R            
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 141 ---------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
                          +   I K  P A     +NP+         +  +     P K +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTV---PIKAVG 172

Query: 186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
                       + E LGL+   VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 40  AGFKVAILGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVR 95
              K+A +G  G  G     ++ L     +   + LYD+          I +       R
Sbjct: 4   DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR 62

Query: 96  GFLGQPQLENALTGMDLVIIPAGV------------PRKPGMTRDDLFNINAG------- 136
            +     L+ AL+  D+VII                P + G+ +     +  G       
Sbjct: 63  -YEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLR 121

Query: 137 ---IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR 193
              I   +   I    P + V   +NP++    +  +VF           +  T   +  
Sbjct: 122 AVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAE 181

Query: 194 ANTFVAEVLGLDPRDVDVPVVGGH 217
             T    +      D+ V V+G +
Sbjct: 182 MVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 42/251 (16%)

Query: 29  RQAKCRAKGGAAGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPG 80
                ++      F + I G  G    P   L +L  +    +  L LYD      +   
Sbjct: 16  ENLYFQSNMKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA 74

Query: 81  VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 140
              D+   +    +  F      E A T +D V+    V +      D+   +  G+V  
Sbjct: 75  GACDVFIREKAPDIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQ 133

Query: 141 --------------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
                               + + + K  P+A +   SNP          +         
Sbjct: 134 ETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN------ 187

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
            K+L +  +  V     +A++LGL  R     +   + G+      + ++       +  
Sbjct: 188 SKILNICDM-PVGIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQDQE--GNDLM 241

Query: 241 EYLTNRIQNGG 251
             L   +   G
Sbjct: 242 PKLKEHVSQYG 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 50/346 (14%), Positives = 86/346 (24%), Gaps = 133/346 (38%)

Query: 93  VVRGFLGQP--QLENALT-----------GMD------LVIIPAGVPRKPGMTRDDLFNI 133
           V R    QP  +L  AL            G+       +      V     +     F I
Sbjct: 131 VSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKI 184

Query: 134 ---NAGIVRT---LCEGIAKCCPNATVNLISNPVNS-TVPIAAEVFK-------KAGTYD 179
              N     +   + E + K       N  S   +S  + +     +       K+  Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY- 243

Query: 180 PKKLLGVTMLD------VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC 233
              LL   +L          A     ++L L  R   V      A  T + L        
Sbjct: 244 ENCLL---VLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISL---DHHSM 296

Query: 234 SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA 293
           + T +E + L                                                  
Sbjct: 297 TLTPDEVKSL-------------------------------LLK---------------- 309

Query: 294 FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSW 353
           ++  +  +LP              E+    P          ++    +D L   +    W
Sbjct: 310 YLDCRPQDLP-------------REVLTTNPR------RLSIIAESIRDGLATWDN---W 347

Query: 354 KHSKGHLLQQEMKRC---------QEKFHRLSFFSLES--PSPVIS 388
           KH     L   ++           ++ F RLS F   +  P+ ++S
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 37/204 (18%)

Query: 41  GFKVAILGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTG 91
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 140
            V            AL G D V     V       +D+   +  G++             
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 141 ---------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 191
                    +   + + CP+A +   +NP            K+      +K++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ------EKVVGLCNV-P 178

Query: 192 VRANTFVAEVLGLDPRDVDVPVVG 215
           +     VA++LG+D   V +   G
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAG 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.98
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.97
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.61
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.32
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.32
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.31
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.3
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.28
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.27
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.25
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.22
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.2
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.2
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.19
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.17
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.17
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.14
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.13
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.03
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.02
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.01
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.99
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.94
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.9
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.88
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.86
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.84
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.84
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.82
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.78
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.77
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.73
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.73
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.72
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.72
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.69
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.69
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.68
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.68
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.67
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.67
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.67
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.66
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.66
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.65
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.65
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.63
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.61
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.61
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	97.6
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.58
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.57
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.56
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.55
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.55
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	97.53
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.53
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.53
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.52
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.52
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.52
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	97.51
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.5
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.49
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.48
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	97.48
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.47
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.46
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.46
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	97.46
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.45
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.44
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.43
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.42
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.41
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.4
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.39
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.36
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.36
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.36
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.36
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.35
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.34
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.34
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.33
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.33
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.33
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.32
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.31
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.31
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.31
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	97.3
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.29
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.26
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	97.25
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.24
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.23
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.23
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.22
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	97.21
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.21
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.19
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.19
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.19
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.17
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.17
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.16
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.15
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.14
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.13
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.13
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	97.12
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	97.1
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.09
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	97.09
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	97.09
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.07
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.06
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.05
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.04
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.03
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.02
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.02
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.01
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.01
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.0
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.99
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.98
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.98
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	96.97
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.96
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.96
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.96
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.96
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.95
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.95
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.95
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.91
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.91
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.91
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.89
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.87
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.87
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.87
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.86
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.86
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.85
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.84
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.83
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.83
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.83
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.81
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.8
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.8
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.8
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.79
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.79
4f6c_A	427	AUSA reductase domain protein; thioester reductase	96.77
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.77
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.77
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.77
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.76
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.76
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.75
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.75
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.73
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.72
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.72
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.72
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.72
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.72
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.72
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.71
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.71
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.71
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.7
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.68
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.67
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.67
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	96.67
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	96.67
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.66
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.66
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.66
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.64
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.64
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.63
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.63
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.63
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.63
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.62
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.62
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.62
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.61
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.61
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.61
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.6
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.6
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.6
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.6
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.58
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.58
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.58
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.58
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.57
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.56
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.55
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.55
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.55
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.55
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.55
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.54
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.53
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	96.52
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.51
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.51
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.51
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.5
1spx_A	278	Short-chain reductase family member (5L265); paral	96.5
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.49
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	96.49
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.48
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.48
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.48
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.48
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.47
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.44
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.44
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.43
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.43
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.42
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.42
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.42
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.41
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.4
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.4
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.4
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	96.4
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.4
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.39
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.39
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.39
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.38
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.38
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	96.37
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.37
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.37
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.36
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.35
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.35
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.34
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.34
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.34
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.34
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.34
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.34
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.33
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.33
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.33
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.33
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.32
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.32
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.32
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.31
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.31
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.29
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.29
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.28
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.27
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.27
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.27
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.27
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.27
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.26
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.26
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.25
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.25
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.25
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.25
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.25
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.23
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.23
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.22
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.2
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.2
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.2
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.2
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.2
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.18
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.18
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.18
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.17
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.17
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.16
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.16
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.16
4f6l_B	508	AUSA reductase domain protein; thioester reductase	96.16
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.15
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.15
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.15
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.15
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.15
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.15
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.13
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.13
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.12
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.12
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.1
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.1
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.1
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.1
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.09
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.07
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.07
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.07
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	96.07
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.07
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.06
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.05
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.05
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.05
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.05
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.05
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.04
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.03
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.03
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.0
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.0
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	95.98
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.98
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	95.98
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	95.98
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	95.97
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.97
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.96
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.95
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.95
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.95
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	95.94
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.93
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.92
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	95.92
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.88
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.86
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.86
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.86
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.85
1xkq_A	280	Short-chain reductase family member (5D234); parra	95.84
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.84
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	95.83
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.83
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.82
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.81
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	95.81
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.8
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.79
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	95.79
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.78
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.78
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	95.77
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.75
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.75
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	95.74
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.71
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.68
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.67
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.66
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	95.65
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	95.65
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.65
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	95.65
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.64
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.64
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.62
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.62
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.59
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.59
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.58
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.57
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.56
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.55
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.54
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.5
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.49
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.48
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	95.48
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.47
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.44
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.43
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.43
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.41
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.39
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.39
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.37
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.36
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.36
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	95.32
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.32
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.31
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.31
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.3
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.26
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	95.26
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.26
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.26
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.24
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.22
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.21
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.2
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.16
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.15
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.11
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.11
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.1
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.08
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.08
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.08
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.06
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.03
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	94.99
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.99
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	94.98
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	94.97
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	94.95
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	94.95
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	94.94
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.94
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.94
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.94
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.93
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	94.93
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	94.93
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	94.92
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.92
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	94.91
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.88
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.87
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	94.87
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.86
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.84
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	94.84
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.83
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	94.82
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.81
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.8
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.8
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.79
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.78
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.78
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	94.77
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	94.76
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	94.76

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=1.8e-67  Score=516.74  Aligned_cols=308  Identities=54%  Similarity=0.843  Sum_probs=274.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |||+||||+|+||+++++.|+++ ++.+||+|+|+++ +.|.++||+|......++.+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            79999996699999999999987 8889999999997 7899999999865456665543 3446899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCC-CCCceeecccccHHHHHHHH
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY-DPKKLLGVTMLDVVRANTFV  198 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~-p~~kviG~t~Lds~R~~~~l  198 (390)
                      ||+|||+|+|++.+|++++++++++|.++||+++++++|||+|++|++++++++ .+++ |++|+||+|.||++|++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k-~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLK-KAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHH-HTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHH-HcCCCCcceEEEEechhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999877655 4565 99999999999999999999


Q ss_pred             HHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHH
Q 016424          199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA  278 (390)
Q Consensus       199 a~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~a  278 (390)
                      |+++|++|++|+++|||||++++++|+||++ .+.++++++|+++.++++++|++|+++|.|+|+++||+|+|+++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~a  237 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS  237 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHH
Confidence            9999999999999999999444999999998 334578899999999999999999998878899999999999999999


Q ss_pred             HHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchhcc
Q 016424          279 CLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKG  358 (390)
Q Consensus       279 Il~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~  358 (390)
                      |+.+.++++.+++|+|++|+..+++|||+||++|++|+++++++++|+++|+++|++++    +.|++.       +++|
T Consensus       238 i~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~----~~l~~~-------i~~g  306 (312)
T 3hhp_A          238 LVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGML----DTLKKD-------IALG  306 (312)
T ss_dssp             HHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHH----HHHHHH-------HHHH
T ss_pred             HHHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHH----HHHHHH-------HHHH
Confidence            96555556678999988876556899999999999999999996699999999999998    566666       6777


Q ss_pred             hHhHH
Q 016424          359 HLLQQ  363 (390)
Q Consensus       359 ~~~~~  363 (390)
                      ++|++
T Consensus       307 ~~~~~  311 (312)
T 3hhp_A          307 EEFVN  311 (312)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            77764

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=1e-65  Score=504.82  Aligned_cols=312  Identities=56%  Similarity=0.911  Sum_probs=286.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+||||+|+||+++++.|+.++++.||+|+|+++.++.++||.|.....+++.+.+++|+++|++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999998899999999999999888999999999888999999998765577776555688889999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHHHH
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  201 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~  201 (390)
                      ++|++|.|++.+|++++++++++|.++||++|++++|||+|++|+++++++++.++||++||||+|+||+.|++++||++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             hCCCCCCCceEEeecc-cCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHH
Q 016424          202 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL  280 (390)
Q Consensus       202 l~v~p~~V~~~ViG~H-g~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl  280 (390)
                      +|++|++|+++||||| |+ +++|+||++++...+++++++++.+++++++++|++.|.|+|+++|++|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 66 899999999865468888999999999999999999988889999999999999999999


Q ss_pred             cccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchhcchH
Q 016424          281 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHL  360 (390)
Q Consensus       281 ~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~~~  360 (390)
                      +|+++++.++++++++|+|++++|||+||++|++|+++++++++|+++|+++|++++.    .|++.       ++++.+
T Consensus       240 ~~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~----~l~~~-------~~~~~~  308 (314)
T 1mld_A          240 DAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIP----ELKAS-------IKKGEE  308 (314)
T ss_dssp             HHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHH----HHHHH-------HHHHHH
T ss_pred             cCcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHH----HHHHH-------HHHHHH
Confidence            9987665688889999999889999999999999999998877999999999999994    55555       455566


Q ss_pred             hHHHh
Q 016424          361 LQQEM  365 (390)
Q Consensus       361 ~~~~~  365 (390)
                      |++++
T Consensus       309 ~~~~~  313 (314)
T 1mld_A          309 FVKNM  313 (314)
T ss_dssp             HHTTC
T ss_pred             HHhcc
Confidence            76553

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=2.6e-65  Score=504.85  Aligned_cols=296  Identities=22%  Similarity=0.341  Sum_probs=262.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      ..+.+||+|||| |+||+++++.++.+++++||+|+|+++  ++|+++||+|+.. ....+.. .++|+ ++++|||+||
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d~-~~~~~aDiVv   92 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV-SSKDY-SVTANSKLVI   92 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEE-ECSSG-GGGTTEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEE-EcCCH-HHhCCCCEEE
Confidence            456789999999 999999999999999999999999988  6999999999852 2222222 24576 6899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHH
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R  193 (390)
                      +++|.||||||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.+++|++|+||+ |.||++|
T Consensus        93 i~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~----~k~sg~p~~rviG~gt~LD~~R  168 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA----WKISGFPKNRVIGSGCNLDSAR  168 (331)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             EccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHHhCCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999998654    77889999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccC
Q 016424          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGA  261 (390)
Q Consensus       194 ~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gk  261 (390)
                      ++++||+++|++|++|+++||||||+ +++|+||++++.+            .+++++|+++.++++++|++|+++|   
T Consensus       169 ~~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---  244 (331)
T 4aj2_A          169 FRYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---  244 (331)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC---
Confidence            99999999999999999999999998 9999999998632            2356779999999999999999976   


Q ss_pred             CchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHH
Q 016424          262 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHL  338 (390)
Q Consensus       262 g~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~  338 (390)
                      |+++|++|+++++++++|++|.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|++++ 
T Consensus       245 g~t~~a~a~a~a~~~~ail~d~~---~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~-  319 (331)
T 4aj2_A          245 GYTSWAIGLSVADLAESIMKNLR---RVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSA-  319 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHH-
T ss_pred             CCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHHH-
Confidence            78999999999999999999865   478876 889998  46999999999999999999995 99999999999999 


Q ss_pred             HHHHHHHhhhhhcc
Q 016424          339 CFQDWLGESEERVS  352 (390)
Q Consensus       339 ~i~~~l~~~~~~v~  352 (390)
                         +.|+++++++.
T Consensus       320 ---~~l~~~~~~~~  330 (331)
T 4aj2_A          320 ---DTLWGIQKELQ  330 (331)
T ss_dssp             ---HHHHHHHTTCC
T ss_pred             ---HHHHHHHhhcC
Confidence               45555655544

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=6.7e-65  Score=494.28  Aligned_cols=281  Identities=22%  Similarity=0.355  Sum_probs=251.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      |||+|||| |+||++++++|+++++++||+|||+++  ++|+++||+|+..    .+.+..   ++|+ ++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d~-~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GADY-SLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCCH-HHhCCCCEEEE
Confidence            79999998 999999999999999999999999998  7999999999642    234443   3564 78999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.||||||+|+|++..|++++++++++|.++||+++++++|||+|++|+++    ++.+++|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~----~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh----HHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999999865    78899999999999 89999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHH
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK  274 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~  274 (390)
                      +++|++.+++++.  +++|||+||+ +++|+||++++.+..   +++++.++++++|+||+++|   |+|+|++|+++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~~---~~~~i~~~~~~~g~eIi~~k---Gst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESCC---CHHHHHHHHHTHHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCch---hHHHHHHHHhhhheEEEecC---cccchhHHHHHHH
Confidence            9999999987764  6899999999 999999999985432   46778899999999999965   8999999999999


Q ss_pred             HHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424          275 FADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG  345 (390)
Q Consensus       275 lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~  345 (390)
                      ++++|++|.+   .++||+ +++|+| .+++|||+||+||++|++ ++++ +|+++|+++|++++..+++.++
T Consensus       223 ~~~ail~d~~---~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gve-i~~l-~L~~~E~~~l~~s~~~lk~~i~  290 (294)
T 2x0j_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLE  290 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC---cEEEEEEEEecCCCCccEEEEEEEEEeCCEEE-EeCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999864   488887 789999 679999999999999985 8885 9999999999999965544443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=5e-64  Score=494.77  Aligned_cols=290  Identities=22%  Similarity=0.355  Sum_probs=244.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ++++||+|||| |+||+++++.|+.++++++|+|+|+++  ++|+++||+|+.. ...+++++  ++ +++++|||+||+
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~--~~-~~a~~~aDiVvi   82 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS--AE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE--Cc-HHHhcCCCEEEE
Confidence            45689999998 999999999999999999999999988  6899999999763 23556543  34 588999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.||+|||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.++||++||||+ |.||++|+
T Consensus        83 ~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~----~k~~g~p~~rviG~gt~LD~~R~  158 (326)
T 3vku_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH----HHhcCCCHHHeeeecccCcHHHH
Confidence            99999999999999999999999999999999999999999999999998654    77889999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----------CCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----------~~~~~~~~l~~~v~~~~~eIi~~k~gkg~  263 (390)
                      +++||+++|++|++|+++||||||+ +++|+||++++.+.           +++++++++.++++++|++|+++|   |+
T Consensus       159 ~~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~  234 (326)
T 3vku_A          159 RQSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GA  234 (326)
T ss_dssp             HHHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcC---CC
Confidence            9999999999999999999999998 99999999987531           156678999999999999999955   89


Q ss_pred             hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      |+||+|+++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|+
T Consensus       235 t~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L~  310 (326)
T 3vku_A          235 TFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK  310 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcCCC---ceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999743   588886 899999 46999999999999999999996 999999999999995444


Q ss_pred             HHH
Q 016424          342 DWL  344 (390)
Q Consensus       342 ~~l  344 (390)
                      +.+
T Consensus       311 ~~~  313 (326)
T 3vku_A          311 KVL  313 (326)
T ss_dssp             CC-
T ss_pred             HHH
Confidence            333

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=6.8e-63  Score=480.63  Aligned_cols=281  Identities=22%  Similarity=0.344  Sum_probs=254.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc--C--CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--T--GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~--~--~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      |||+|||| |++|+++++.|+.++++++|+|||+++  ++|.++||+|..  .  ..+++.   ++| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            79999999 999999999999999889999999998  678899999975  2  234543   356 799999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.||+|||+|+|++.+|++++++++++|.++||+|+++++|||+|++|+++    ++.++||++||||+ |.||++||
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH----HHhcCCCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998754    78899999999999 89999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHH
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK  274 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~  274 (390)
                      +++|| ++|++|++ +++||||||+ +++|+||++++.+ .+  +++++.++++++|+||+++|   |+++||+|+++++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~k---G~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence            99999 99999999 9999999998 9999999999853 22  68899999999999999975   7999999999999


Q ss_pred             HHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424          275 FADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG  345 (390)
Q Consensus       275 lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~  345 (390)
                      ++++|++|.+   .+++|+ +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++++..|++.++
T Consensus       223 ~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~~~  290 (294)
T 1oju_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLE  290 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC---eEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999753   489997 899999 459999999999999999 9996 9999999999999965555544

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=2.5e-63  Score=487.71  Aligned_cols=292  Identities=26%  Similarity=0.437  Sum_probs=255.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||| |.||+++++.+++++++++|+|+|+++  ++|.++||+|+.+  ...+++.. +++ +++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~-~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG-TND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEE-ESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEE-CCC-HHHhCCCCEEEECC
Confidence            79999999 999999999999999999999999998  7899999999752  12333321 234 68999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHHHHHH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANT  196 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~R~~~  196 (390)
                      |.||+|||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.++||++||||+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA----YEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH----HHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH----HHhcCCChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875    567899999999995 899999999


Q ss_pred             HHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----CCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHH
Q 016424          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA  271 (390)
Q Consensus       197 ~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a  271 (390)
                      ++|+++|++|++|+++||||||+ +++|+||++++.+     .+++++++++.++++++|++|+++| |+ +++||+|++
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            99999999999999999999999 9999999998753     2467788999999999999999987 44 899999999


Q ss_pred             HHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhh
Q 016424          272 AVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGES  347 (390)
Q Consensus       272 ~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~  347 (390)
                      +++++++|++|.+   .+++|+ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|++.+++.
T Consensus       231 ~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~  304 (314)
T 3nep_X          231 AAEMTEAILKDNK---RILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDDL  304 (314)
T ss_dssp             HHHHHHHHHHTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC---eEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999753   588987 889999 57999999999999999999996 999999999999997766666655

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.8e-62  Score=484.13  Aligned_cols=313  Identities=85%  Similarity=1.251  Sum_probs=282.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ++++|||+||||+|+||++++..|+.++++.||+|+|+++..+.++||.|......++.+.+++|+++|++|||+||+++
T Consensus         5 ~~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~a   84 (326)
T 1smk_A            5 GAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA   84 (326)
T ss_dssp             ---CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcC
Confidence            45678999999669999999999998888889999999877788999999764446766555568889999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF  197 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~  197 (390)
                      |.|+++|++|.+++.+|+++++++++++.+++|++|++++|||+|++|+++++++++.++||++||||+|+||+.|++++
T Consensus        85 g~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~  164 (326)
T 1smk_A           85 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTF  164 (326)
T ss_dssp             CCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHH
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCceEEeecc-cCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHH
Q 016424          198 VAEVLGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA  276 (390)
Q Consensus       198 la~~l~v~p~~V~~~ViG~H-g~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv  276 (390)
                      ||+++|++|++|+++||||| |+ +++|+||++++...+++++++++.+++++++++|++.|.|+|+++||+|.++++++
T Consensus       165 la~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~  243 (326)
T 1smk_A          165 VAEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA  243 (326)
T ss_dssp             HHHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH
T ss_pred             HHHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999 65 99999999988766888899999999999999999988788999999999999999


Q ss_pred             HHH---HcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhccc
Q 016424          277 DAC---LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSW  353 (390)
Q Consensus       277 ~aI---l~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~  353 (390)
                      ++|   ++|.+   .++++++++|++++++|||+||++|++|+++++++++|+++|+++|++++    +.|++.      
T Consensus       244 ~ai~~~~~~~~---~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~----~~l~~~------  310 (326)
T 1smk_A          244 DACLRGLRGDA---GVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAK----KELAGS------  310 (326)
T ss_dssp             HHHHHHHHTCS---CEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHH----HHHHHH------
T ss_pred             HHHHHHhCCCC---eEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHH----HHHHHH------
Confidence            999   76654   58899988998888999999999999999999984499999999999999    455555      


Q ss_pred             chhcchHhHHHh
Q 016424          354 KHSKGHLLQQEM  365 (390)
Q Consensus       354 ~~~~~~~~~~~~  365 (390)
                       ++++.+|++++
T Consensus       311 -~~~~~~~~~~~  321 (326)
T 1smk_A          311 -IEKGVSFIRSH  321 (326)
T ss_dssp             -HHHHHHHHCC-
T ss_pred             -HHHHHHHHHhh
Confidence             56667887765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2.9e-63  Score=489.52  Aligned_cols=293  Identities=23%  Similarity=0.324  Sum_probs=262.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      ++++||+|||| |.||+++++.|+..+++++|+|+|+++  +.|+++||+|....  ..++.++  ++ +++++|||+||
T Consensus         3 ~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~--~~-~~a~~~aDvVv   78 (326)
T 3pqe_A            3 KHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY--GT-YEDCKDADIVC   78 (326)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEE--EC-GGGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEe--Cc-HHHhCCCCEEE
Confidence            45789999998 999999999999999889999999988  68999999997421  3556553  34 48899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHH
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R  193 (390)
                      +++|.||+|||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.++||++||||+ |.||++|
T Consensus        79 i~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R  154 (326)
T 3pqe_A           79 ICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT----WKFSGLPKERVIGSGTTLDSAR  154 (326)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             EecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH----HHhcCCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999998654    77789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----C-------CCHHHHHHHHHhhccchhhhHhhhccCC
Q 016424          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (390)
Q Consensus       194 ~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~-------~~~~~~~~l~~~v~~~~~eIi~~k~gkg  262 (390)
                      ++++||+++|++|++|+++||||||+ +++|+||++++.+    +       +++++++++.++++++|++|+++|   |
T Consensus       155 ~~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G  230 (326)
T 3pqe_A          155 FRFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---G  230 (326)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHH---S
T ss_pred             HHHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCC---C
Confidence            99999999999999999999999998 9999999998753    1       256788999999999999999965   8


Q ss_pred             chhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHH
Q 016424          263 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCF  340 (390)
Q Consensus       263 ~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i  340 (390)
                      +|+||+|+|+++++++|++|.+   .+++|+ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|
T Consensus       231 ~t~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l  306 (326)
T 3pqe_A          231 ATYYGVAMSLARITKAILHNEN---SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVL  306 (326)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCCC---cEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999743   588876 899999 46999999999999999999996 99999999999999655


Q ss_pred             HHHHHhh
Q 016424          341 QDWLGES  347 (390)
Q Consensus       341 ~~~l~~~  347 (390)
                      ++.+++.
T Consensus       307 ~~~~~~~  313 (326)
T 3pqe_A          307 KNILKPH  313 (326)
T ss_dssp             HHHHTTT
T ss_pred             HHHHHHh
Confidence            5555443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=1.6e-62  Score=483.95  Aligned_cols=293  Identities=30%  Similarity=0.460  Sum_probs=261.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      +++||+|||| |++|+++++.|++.++. +|+|+|+++  +.|.++||.|...    ..+++.   ++|+ ++++|||+|
T Consensus         6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~aDiV   79 (324)
T 3gvi_A            6 ARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEGADVV   79 (324)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTTCSEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCCCCEE
Confidence            4679999999 99999999999999885 999999998  6889999999752    345554   3575 899999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHH
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVV  192 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~  192 (390)
                      |+++|.||+|||+|.|++.+|++++++++++|.++||+|+++++|||+|++|+++    ++.++||++|+||+| .||++
T Consensus        80 Iiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~~  155 (324)
T 3gvi_A           80 IVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL----QKFSGLPAHKVVGMAGVLDSA  155 (324)
T ss_dssp             EECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHH
T ss_pred             EEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH----HHhcCCCHHHEEeecCccHHH
Confidence            9999999999999999999999999999999999999999999999999999765    778899999999997 79999


Q ss_pred             HHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCC
Q 016424          193 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (390)
Q Consensus       193 R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg  262 (390)
                      |++++||+++|++|++|+++||||||+ +++|+||++++.+          .+++++++++.++++++|+||+++| |+|
T Consensus       156 R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-gkg  233 (324)
T 3gvi_A          156 RFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTG  233 (324)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSC
T ss_pred             HHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-CCC
Confidence            999999999999999999999999998 9999999998743          1367789999999999999999987 889


Q ss_pred             chhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHH
Q 016424          263 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCF  340 (390)
Q Consensus       263 ~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i  340 (390)
                      +|+||+|+|+++++++|++|.+   .+++|+ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|
T Consensus       234 sa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  309 (324)
T 3gvi_A          234 SAFYAPAASAIQMAESYLKDKK---RVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKSVASV  309 (324)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999864   589997 789999 45999999999999999999996 99999999999999877


Q ss_pred             HHHHHhhh
Q 016424          341 QDWLGESE  348 (390)
Q Consensus       341 ~~~l~~~~  348 (390)
                      +..+++.+
T Consensus       310 ~~~~~~~~  317 (324)
T 3gvi_A          310 AGLCEACI  317 (324)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=1.6e-62  Score=482.19  Aligned_cols=289  Identities=29%  Similarity=0.441  Sum_probs=261.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC--c--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--N--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~--~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      +++||+|||| |.+|+++++.+++.++ ++|+|+|++  +  ++|.++||.|..    ...+++.   ++| +++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSD-YADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESC-GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCC-HHHhCCCC
Confidence            4579999999 9999999999999998 999999999  5  688999999874    3356664   346 48899999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-cccc
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  190 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Ld  190 (390)
                      +||+++|.||+|||+|+|++.+|++++++++++|.++||++|++++|||+|++|+++    ++.++||++|+||+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~----~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV----FKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH----HHhcCCChHHEEeeccCcH
Confidence            999999999999999999999999999999999999999999999999999999875    56789999999999 9999


Q ss_pred             HHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----CCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          191 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       191 s~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      ++|++++||+++|++|++|+++||||||+ +++|+||++++.+     .+++++++++.++++++|++|++++ |||+|+
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            99999999999999999999999999998 9999999998753     2577788999999999999999974 789999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW  343 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~  343 (390)
                      ||+|+++++++++|++|.+   .+++|+ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|++.
T Consensus       235 ~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~  310 (315)
T 3tl2_A          235 YAPAASLVEMTEAILKDQR---RVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNV  310 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999743   588987 889999 56999999999999999999996 99999999999999655444


Q ss_pred             H
Q 016424          344 L  344 (390)
Q Consensus       344 l  344 (390)
                      +
T Consensus       311 ~  311 (315)
T 3tl2_A          311 M  311 (315)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=4.1e-62  Score=480.56  Aligned_cols=290  Identities=31%  Similarity=0.491  Sum_probs=262.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      ++||+|||| |++|+++++.|+.+++. +|+|+|+++  ++|.++||+|+..    ..+++.   ++| +++++|||+||
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d-~~a~~~aDvVI   78 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TND-YKDLENSDVVI   78 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCC-HHHHCCCCEEE
Confidence            579999998 99999999999999887 999999998  5789999999742    345553   346 48999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHHH
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR  193 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~R  193 (390)
                      +++|.||+|||+|+|++.+|++++++++++|.++||+|+++++|||+|++|+++    ++.+++|++|+||+| .||++|
T Consensus        79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~~R  154 (321)
T 3p7m_A           79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML----QKFSGVPDNKIVGMAGVLDSAR  154 (321)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEECHHHHHHH
T ss_pred             EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHhcCCCHHHEEeeccchHHHH
Confidence            999999999999999999999999999999999999999999999999998654    778899999999996 899999


Q ss_pred             HHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (390)
Q Consensus       194 ~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~  263 (390)
                      ++++||+++|++|++|+++||||||+ +++|+||++++.+          .+++++++++.++++++|++|+++| |+|+
T Consensus       155 ~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~gs  232 (321)
T 3p7m_A          155 FRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGS  232 (321)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCCC
Confidence            99999999999999999999999998 9999999998743          1467789999999999999999987 8899


Q ss_pred             hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eee-CCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHH
Q 016424          264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVA-SQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLC  339 (390)
Q Consensus       264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~-g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~  339 (390)
                      |+||+|+|+++++++|++|.+   .+++|+ +++ |+|  ++++|||+||++|++|++++ ++ +|+++|+++|++++..
T Consensus       233 a~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~~~  307 (321)
T 3p7m_A          233 AYYAPAAAGIQMAESFLKDKK---MILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSINA  307 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---cEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHHHH
Confidence            999999999999999999854   589997 788 888  45999999999999999999 86 9999999999999977


Q ss_pred             HHHHHHhh
Q 016424          340 FQDWLGES  347 (390)
Q Consensus       340 i~~~l~~~  347 (390)
                      |++.+++.
T Consensus       308 l~~~~~~~  315 (321)
T 3p7m_A          308 IKDLNKAA  315 (321)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666655

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=4.9e-62  Score=483.59  Aligned_cols=305  Identities=25%  Similarity=0.318  Sum_probs=259.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      +.+++||+||||+|+||+++++.++..++..||+|+|+++  ++|.++||+|+.+. .+++.   ++|++++++|||+||
T Consensus         5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvVv   81 (343)
T 3fi9_A            5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYIV   81 (343)
T ss_dssp             CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEEE
Confidence            4567899999987999999999999999888999999987  68999999998642 35554   357889999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHH
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  193 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~-iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R  193 (390)
                      +++|.||+|||+|+|++.+|+++++++++.|.++||+++ ++++|||+|++|+++    ++.++||++||+|+|.||++|
T Consensus        82 itaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~----~k~sg~p~~rv~g~t~LDs~R  157 (343)
T 3fi9_A           82 SSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT----LIYSGLKPSQVTTLAGLDSTR  157 (343)
T ss_dssp             ECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH----HHHHTCCGGGEEEECCHHHHH
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH----HHHcCCCcceEEEecCcHHHH
Confidence            999999999999999999999999999999999999996 899999999999876    566789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCC
Q 016424          194 ANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (390)
Q Consensus       194 ~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg  262 (390)
                      |+++||+++|++|++|+ ++||||||+ +++|+||++++.+          .+++++|+++.++++++|++|+++| | +
T Consensus       158 ~~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-~  234 (343)
T 3fi9_A          158 LQSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-R  234 (343)
T ss_dssp             HHHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-S
T ss_pred             HHHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-C
Confidence            99999999999999997 899999999 9999999998742          1467889999999999999999987 2 3


Q ss_pred             chhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCCCCccEEEEeEEEcCCceEEEccCCC-CCHHHHHHHHHhHHHH
Q 016424          263 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGP-LNEYESGLFCLLHLCF  340 (390)
Q Consensus       263 ~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~-Ls~~E~~~L~~~~~~i  340 (390)
                      ++++|+|+|+++++++|++|.+   .++|++ |++|++.+++|||+||++|++||+.+ .++. |+++|+++|++++..|
T Consensus       235 ss~~s~A~a~~~~~~ail~d~~---~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l  310 (343)
T 3fi9_A          235 SSFQSPSYVSIEMIRAAMGGEA---FRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHL  310 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSC---CCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHH
T ss_pred             CcHHhHHHHHHHHHHHHHhCCC---ceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHH
Confidence            4567999999999999999865   366665 88887777999999999999999976 4323 8999999999999888


Q ss_pred             HHHHHhhhh-hcccchh
Q 016424          341 QDWLGESEE-RVSWKHS  356 (390)
Q Consensus       341 ~~~l~~~~~-~v~~~~~  356 (390)
                      ++.+++.+. |+.+.|+
T Consensus       311 ~~~~~~~~~lg~~~~~~  327 (343)
T 3fi9_A          311 AKLRDEVIAMGIIPAIA  327 (343)
T ss_dssp             HHHHHHHHHTTSSCCGG
T ss_pred             HHHHHHHHHcCCCCChh
Confidence            877776643 3444443

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.2e-60  Score=471.11  Aligned_cols=293  Identities=22%  Similarity=0.355  Sum_probs=257.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc-CCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~-~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ++.+||+|||| |+||+++++.|+++++++||+|+|+++  +++.++||.|+. ....+++..  .+ ++|++|||+||+
T Consensus         7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii   82 (326)
T 2zqz_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEE
Confidence            45689999999 999999999999999999999999987  688999999975 224555543  23 688999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|++|||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.++||++||||+ |.||++|+
T Consensus        83 ~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~  158 (326)
T 2zqz_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEEccccchHHHH
Confidence            99999999999999999999999999999999999999999999999998654    78889999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----------CCCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~  263 (390)
                      +++||+++|++|++|+++||||||+ +++|+||++++.+           .++++.++++.+++++++++|++.   ||+
T Consensus       159 ~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~---kG~  234 (326)
T 2zqz_A          159 RQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKL---KGA  234 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHc---CCC
Confidence            9999999999999999999999998 9999999987632           256677899999999999999994   488


Q ss_pred             hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      ++|++|.|+++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|+
T Consensus       235 t~~~~a~aa~~~~~ai~~~~~---~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  310 (326)
T 2zqz_A          235 TFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK  310 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCC---cEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999864   477776 889998 34999999999999999999995 999999999999997666


Q ss_pred             HHHHhh
Q 016424          342 DWLGES  347 (390)
Q Consensus       342 ~~l~~~  347 (390)
                      ..+++.
T Consensus       311 ~~~~~~  316 (326)
T 2zqz_A          311 KVLTDA  316 (326)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=8.3e-61  Score=470.79  Aligned_cols=293  Identities=22%  Similarity=0.343  Sum_probs=252.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc-CCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~-~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ++.+||+|||| |+||+++++.|+++++++||+|+|+++  +++.++||.|+. ....+++..  .+ ++|++|||+||+
T Consensus         3 ~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii   78 (318)
T 1ez4_A            3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVI   78 (318)
T ss_dssp             TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEE
Confidence            45589999999 999999999999999999999999987  688999999975 224555543  23 689999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|++|||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.++||++||||+ |.||++|+
T Consensus        79 ~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~  154 (318)
T 1ez4_A           79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGSGTSLDSSRL  154 (318)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEeccccchHHHH
Confidence            99999999999999999999999999999999999999999999999998654    78889999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCch
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t  264 (390)
                      ++++|+++|++|++|+++||||||+ +++|+||++++.+          .++++.++++.+++++++++|++.   +|++
T Consensus       155 ~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~t  230 (318)
T 1ez4_A          155 RVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINL---KGAT  230 (318)
T ss_dssp             HHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH---HSCC
T ss_pred             HHHHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeC---CCcc
Confidence            9999999999999999999999998 9999999988742          256777899999999999999994   4889


Q ss_pred             hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424          265 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD  342 (390)
Q Consensus       265 ~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~  342 (390)
                      +|++|.|+++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|+.
T Consensus       231 ~~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~  306 (318)
T 1ez4_A          231 FYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKK  306 (318)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999854   477776 789998 34999999999999999999995 9999999999999976666


Q ss_pred             HHHhh
Q 016424          343 WLGES  347 (390)
Q Consensus       343 ~l~~~  347 (390)
                      .+++.
T Consensus       307 ~~~~~  311 (318)
T 1ez4_A          307 VLNDG  311 (318)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=2.5e-60  Score=465.84  Aligned_cols=289  Identities=21%  Similarity=0.309  Sum_probs=258.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||| |+||+++++.|+++++++||+|+|+++  +++.++||.|+.. ...+++..  ++ ++|++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999999 999999999999999999999999998  6889999999752 23445443  24 688999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~  197 (390)
                      .|++|||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.++||++|+||+ |+||++|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA----YALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998755    67789999999999 99999999999


Q ss_pred             HHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      +|+++|++|++|+++||||||+ +++|+||++++.+            .++++.++++.+++++++++|++.   ||+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEG---KGATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHH---HSCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhc---cCCcH
Confidence            9999999999999999999998 9999999987632            146777899999999999999995   47899


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW  343 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~  343 (390)
                      |++|.++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..++..
T Consensus       229 ~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~  304 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTDEK---GVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEA  304 (310)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---CEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   477776 789988 46899999999999999999995 99999999999999655555


Q ss_pred             HHh
Q 016424          344 LGE  346 (390)
Q Consensus       344 l~~  346 (390)
                      +++
T Consensus       305 ~~~  307 (310)
T 2xxj_A          305 AFA  307 (310)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=3.9e-60  Score=469.93  Aligned_cols=298  Identities=23%  Similarity=0.295  Sum_probs=244.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhh
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al  107 (390)
                      .+..+.||+|+||+|+||++++++|++++++.     ||+|||+++    ++|+++||+|+.++...+.+. ++|.++++
T Consensus        20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~~~~~a~   98 (345)
T 4h7p_A           20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TADPRVAF   98 (345)
T ss_dssp             --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ESCHHHHT
T ss_pred             CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cCChHHHh
Confidence            35566799999998999999999999988765     999999987    479999999998765555554 45778999


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      +|||+||+++|.||||||+|+||+.+|+++++++++.|.++| |+++|+++|||+|++++++.   ++.+++++.|+||.
T Consensus        99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~---~~~~g~~~~r~i~~  175 (345)
T 4h7p_A           99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILL---KSAQGKLNPRHVTA  175 (345)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH---HHTTTCSCGGGEEE
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHH---HHccCCCCcceeee
Confidence            999999999999999999999999999999999999999997 89999999999999998763   45667766665555


Q ss_pred             -ccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCCCC-----CCHHHH-HHHHHhhccchhhhHhhh
Q 016424          187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPCS-----FTQEET-EYLTNRIQNGGTEVVEAK  258 (390)
Q Consensus       187 -t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~~-~~l~~~v~~~~~eIi~~k  258 (390)
                       |.||++||+++||+++|++|++|+ ++||||||+ +++|+||++++.+.     ++++.+ +++.++++++|+||+++|
T Consensus       176 ~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k  254 (345)
T 4h7p_A          176 MTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR  254 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcC
Confidence             999999999999999999999997 568999999 99999999987531     333333 579999999999999987


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEeee-eCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424          259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV-ASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL  335 (390)
Q Consensus       259 ~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~-~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~  335 (390)
                        +++++||+|+|+++++++|++|.+....+..+.+. +|+|  ++++|||+||++| +|++++++..+|+++|+++|++
T Consensus       255 --g~ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~  331 (345)
T 4h7p_A          255 --GLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLAS  331 (345)
T ss_dssp             --SSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC-----CGGGHH
T ss_pred             --CCcchhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHH
Confidence              25788999999999999999998754322222244 5888  5899999999997 6888888756899999999999


Q ss_pred             hHHHHHH
Q 016424          336 LHLCFQD  342 (390)
Q Consensus       336 ~~~~i~~  342 (390)
                      ++..+++
T Consensus       332 s~~~L~~  338 (345)
T 4h7p_A          332 TIAELQE  338 (345)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9964444

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.1e-61  Score=477.98  Aligned_cols=280  Identities=20%  Similarity=0.250  Sum_probs=251.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC---CCeEEEEeCCCChhhhhCCCcEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~---~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      .+.+||+|||| |.||+++++.++.++++++|+|+|+++  ++|.++||+|...   ..++..   ++|+ ++++|||+|
T Consensus        19 ~~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---t~d~-~~~~daDiV   93 (330)
T 3ldh_A           19 RSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS---GKDY-SVSAGSKLV   93 (330)
T ss_dssp             CCCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE---ESSS-CSCSSCSEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE---cCCH-HHhCCCCEE
Confidence            35689999999 999999999999999999999999988  6899999999742   234443   4576 569999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHH
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV  192 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~  192 (390)
                      |+++|.||+|||+|+|++.+|++++++++++|.++||+||++++|||+|++|+++    ++.++||++||||+ |.||++
T Consensus        94 IitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~----~k~sg~p~~rViG~gt~LDs~  169 (330)
T 3ldh_A           94 VITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD----WKLSGLPMHRIIGSGCNLDSA  169 (330)
T ss_dssp             EECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEECCTTHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH----HHHhCCCHHHeecccCchhHH
Confidence            9999999999999999999999999999999999999999999999999998765    67779999999999 789999


Q ss_pred             HHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHH-HHHHHhhccchhhhHhhhccCCchhHHHHH-
Q 016424          193 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET-EYLTNRIQNGGTEVVEAKAGAGSATLSMAY-  270 (390)
Q Consensus       193 R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~-~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~-  270 (390)
                      |+++++|+++|++|++|+++||||||+ +++|+||+          +| +++.++++++|+||+++   ||+++|++|+ 
T Consensus       170 R~~~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~~---kg~t~~a~a~~  235 (330)
T 3ldh_A          170 RFRYLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIKL---KGYTSWAIGLV  235 (330)
T ss_dssp             HHHHHHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTSTT---CHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHHc---cCCcceeeeee
Confidence            999999999999999999999999998 99999998          23 67889999999999995   4899999999 


Q ss_pred             ----------------HHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEE--EccCCCCCHHH
Q 016424          271 ----------------AAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEE--IFQLGPLNEYE  329 (390)
Q Consensus       271 ----------------a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~--i~~l~~Ls~~E  329 (390)
                                      ++++++++|++|.+   .++||+ +++|+|  ++++|||+||++| +|+++  ++++ +|+++|
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E  310 (330)
T 3ldh_A          236 VSNPVDVLTYVAWKGCSVADLAQTIMKDLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDE  310 (330)
T ss_dssp             THHHHTTSSSCSCTHHHHHHHHHHHHHTCC---EEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHH
T ss_pred             ccCccchhhhhhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHH
Confidence                            99999999999754   589997 789999  3599999999999 99999  9995 999999


Q ss_pred             HHHHHHhHHHHHHHHHhhhhh
Q 016424          330 SGLFCLLHLCFQDWLGESEER  350 (390)
Q Consensus       330 ~~~L~~~~~~i~~~l~~~~~~  350 (390)
                      +++|+.++.    .|++.++.
T Consensus       311 ~~~l~~s~~----~l~~~~~~  327 (330)
T 3ldh_A          311 EQQLQKSAT----TLWDIQKD  327 (330)
T ss_dssp             HHHHHHHHH----HHHHHHHT
T ss_pred             HHHHHHHHH----HHHHHHHH
Confidence            999999995    55555433

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=7.5e-60  Score=462.06  Aligned_cols=287  Identities=24%  Similarity=0.400  Sum_probs=258.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ||+|||| |++|+++++.++++++ +||+|+|+++  +++.++||.|..    ...+++.   |+|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999999 9999999999998888 8999999998  688999999963    2345554   3575 899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~  195 (390)
                      +|.|++|||+|+|++.+|++++++++++|+++||+||+|++|||+|++|+++    ++.+++|++||||+ |+||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM----YKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    77789999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----CCHHHHHHHHHhhccchhhhHhhhccCC-chhHHHH
Q 016424          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYLTNRIQNGGTEVVEAKAGAG-SATLSMA  269 (390)
Q Consensus       196 ~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~~~~l~~~v~~~~~eIi~~k~gkg-~t~~s~A  269 (390)
                      +++|+++|++|++|+++||||||+ +++|+||++++.+.     +++++++++.+++++++++|++.|   | +++|++|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR---GYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH---SSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCC---CCccHHHHH
Confidence            999999999999999999999998 99999999987431     577789999999999999999954   7 8999999


Q ss_pred             HHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhh
Q 016424          270 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGES  347 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~  347 (390)
                      .++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..++..+++.
T Consensus       227 ~a~~~~~~ai~~~~~---~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          227 AGLVLTVEAIKRDSK---RIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCCC---cEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588886 789998 46999999999999999999995 999999999999996555555443

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=1.6e-59  Score=468.94  Aligned_cols=293  Identities=20%  Similarity=0.191  Sum_probs=244.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcE---EEEEeCC--c----hHHHHHHHhcccCC--CeEEEEeCCCChhhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSV---LHLYDVV--N----TPGVTADISHMDTG--AVVRGFLGQPQLENA  106 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~e---L~L~Di~--~----~~g~a~DL~~~~~~--~~v~~~~~t~dl~~a  106 (390)
                      .++++||+||||+|+||+++++.|+++++++|   |+|+|++  .    ++|+++||+|+.++  ..+++.  + +.+++
T Consensus        29 ~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~-~~y~~  105 (375)
T 7mdh_A           29 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I-DPYEV  105 (375)
T ss_dssp             CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S-CHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--c-CCHHH
Confidence            46778999999779999999999999999887   7776554  3    58999999998742  355553  3 44799


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      ++|||+||+++|.||||||+|+|++.+|+++++++++.|.++ +|+++++++|||+|++|+++    ++.++++++|+||
T Consensus       106 ~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia----~k~sg~~~~rvig  181 (375)
T 7mdh_A          106 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC----LKNAPDIPAKNFH  181 (375)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEE
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHcCCCCccEEE
Confidence            999999999999999999999999999999999999999998 79999999999999999875    6666666678888


Q ss_pred             c-ccccHHHHHHHHHHHhCCCCCCCce-EEeecccCceeeeccccCCCCC----C-CCHHHH--HHHHHhhccchhhhHh
Q 016424          186 V-TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC----S-FTQEET--EYLTNRIQNGGTEVVE  256 (390)
Q Consensus       186 ~-t~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~t~vp~~S~~~v~~----~-~~~~~~--~~l~~~v~~~~~eIi~  256 (390)
                      . |.||++||+++||+++|++|++|+. +||||||+ +++|+||++++.+    . ..+++|  +++.++++++|++|++
T Consensus       182 ~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~  260 (375)
T 7mdh_A          182 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQ  260 (375)
T ss_dssp             ECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHH
T ss_pred             eeehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHH
Confidence            8 8999999999999999999999985 99999998 9999999998753    2 234444  7899999999999999


Q ss_pred             hhccCCchhHHHHHHHHHHHHHH---HcccCCCCceEEEe-eeeC-CC--CCccEEEEeEEEcCCceEEEccCCCCCHHH
Q 016424          257 AKAGAGSATLSMAYAAVKFADAC---LRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYE  329 (390)
Q Consensus       257 ~k~gkg~t~~s~A~a~~~lv~aI---l~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E  329 (390)
                      +|   |.+++  |.++++++++|   +++.+ ++.+++|+ +++| +|  ++++|||+||++|++|++++++..+|+++|
T Consensus       261 ~k---G~ts~--a~aa~~i~~~i~~~l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E  334 (375)
T 7mdh_A          261 KW---GRSSA--ASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFL  334 (375)
T ss_dssp             HT---SSCCH--HHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHH
T ss_pred             hc---CCCch--HHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHH
Confidence            76   44544  34555555555   54432 34589997 7899 68  479999999999999999999523999999


Q ss_pred             HHHHHHhHHHHHHHH
Q 016424          330 SGLFCLLHLCFQDWL  344 (390)
Q Consensus       330 ~~~L~~~~~~i~~~l  344 (390)
                      +++|++++..++++.
T Consensus       335 ~~~l~~Sa~~L~~e~  349 (375)
T 7mdh_A          335 WERIKKSEAELLAEK  349 (375)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999995444433

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=5.7e-59  Score=457.45  Aligned_cols=292  Identities=23%  Similarity=0.376  Sum_probs=258.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +++||+|||| |+||+++++.|+.+++++||+|+|+++  +.+.++||.|...  ...+++..  ++ ++|++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEEE
Confidence            4579999999 999999999999988889999999997  6788999998641  13445543  23 688999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|++||++|++++.+|++++++++++|.++||++|++++|||+|++|+++    ++.++||++|+||+ |.||++|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYAT----WKFSGLPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHhCCCHHHEEecCccccHHHH
Confidence            99999999999999999999999999999999999999999999999998654    78889999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCch
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t  264 (390)
                      +++||+++|++|++|+++||||||+ +++|+||++++.+          .++++.++++.+++++++++|++.   +|++
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~~  232 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQA---KGAT  232 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHH---HSCC
T ss_pred             HHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeC---CCCc
Confidence            9999999999999999999999998 9999999988742          145567789999999999999994   4889


Q ss_pred             hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424          265 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD  342 (390)
Q Consensus       265 ~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~  342 (390)
                      +|++|.|+++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..++.
T Consensus       233 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~  308 (317)
T 3d0o_A          233 YYGVAMGLARITEAIFRNED---AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLKD  308 (317)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999854   477776 789998 34999999999999999999995 9999999999999966655


Q ss_pred             HHHhh
Q 016424          343 WLGES  347 (390)
Q Consensus       343 ~l~~~  347 (390)
                      .+++.
T Consensus       309 ~~~~~  313 (317)
T 3d0o_A          309 IMAEA  313 (317)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            55443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3e-59  Score=459.70  Aligned_cols=292  Identities=24%  Similarity=0.352  Sum_probs=249.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ++++||+|||| |+||+++++.++.+++++||+|+|+++  +.|.++||.|... ...+++..  ++ +++++|||+||+
T Consensus         5 ~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii   80 (318)
T 1y6j_A            5 KSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVV   80 (318)
T ss_dssp             --CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEE
Confidence            45689999999 999999999999999999999999998  6789999999752 24556543  35 588999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|++||++|+|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+++|++|+||+ |.||++|+
T Consensus        81 ~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~----~k~s~~p~~rviG~gt~Ld~~r~  156 (318)
T 1y6j_A           81 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGSGTVLDSIRF  156 (318)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHH
T ss_pred             cCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHcCCCHHHEeccCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999998755    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----C--------CCHHHHHHHHHhhccchhhhHhhhccCC
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~--------~~~~~~~~l~~~v~~~~~eIi~~k~gkg  262 (390)
                      ++++|+++|++|++|+++||||||+ +++|+||++++.+    .        +++++++++.+++++++++|++.   +|
T Consensus       157 ~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg  232 (318)
T 1y6j_A          157 RYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKN---KG  232 (318)
T ss_dssp             HHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHH---TS
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhC---CC
Confidence            9999999999999999999999998 9999999987632    1        23444689999999999999994   58


Q ss_pred             chhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHH
Q 016424          263 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCF  340 (390)
Q Consensus       263 ~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i  340 (390)
                      +++|++|.|+++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++.+ +|+++|+++|++++..|
T Consensus       233 ~t~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l  308 (318)
T 1y6j_A          233 ATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQV  308 (318)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999855   377776 789998 47999999999999999999995 99999999999999655


Q ss_pred             HHHHHh
Q 016424          341 QDWLGE  346 (390)
Q Consensus       341 ~~~l~~  346 (390)
                      +..+++
T Consensus       309 ~~~~~~  314 (318)
T 1y6j_A          309 KKVLNE  314 (318)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=5.3e-59  Score=460.49  Aligned_cols=294  Identities=22%  Similarity=0.306  Sum_probs=250.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcE-----EEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~e-----L~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dA  110 (390)
                      +++||+|+||+|+||+++++.|+.++++++     |+|+|+++    ++|.++||+|+.+. .+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~-~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP-LLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT-TEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhc-ccCCEEEcCCcHHHhCCC
Confidence            568999999779999999999999998888     99999974    58999999997532 222222245667999999


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-cc
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  188 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a-~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~  188 (390)
                      |+||+++|.||+|||+|+|++.+|+++++++++++.+++|++ |++++|||+|++|+++    ++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~----~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH----HHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999998 7999999999999876    56665555556776 99


Q ss_pred             ccHHHHHHHHHHHhCCCCCCCceE-EeecccCceeeeccccCCC--CC-CC------CHHHH--HHHHHhhccchhhhHh
Q 016424          189 LDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP--PC-SF------TQEET--EYLTNRIQNGGTEVVE  256 (390)
Q Consensus       189 Lds~R~~~~la~~l~v~p~~V~~~-ViG~Hg~~t~vp~~S~~~v--~~-~~------~~~~~--~~l~~~v~~~~~eIi~  256 (390)
                      ||++||+++||+++|++|++|+++ ||||||+ +++|+||++++  .+ .+      ++++|  +++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 5999999 99999999975  22 11      22333  5899999999999999


Q ss_pred             hhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeC-CC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 016424          257 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGL  332 (390)
Q Consensus       257 ~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~  332 (390)
                      +|  ++++.|++|.++++++++|++|.+. +.+++|+ +++| +|  ++++|||+||++ ++|++++++..+|+++|+++
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~~~-~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~  311 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGTPE-GEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREK  311 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCCCT-TCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHH
Confidence            76  3568899999999999999998752 2488998 6799 98  379999999999 99999999723999999999


Q ss_pred             HHHhHHHHHHH
Q 016424          333 FCLLHLCFQDW  343 (390)
Q Consensus       333 L~~~~~~i~~~  343 (390)
                      |++++..|++.
T Consensus       312 l~~sa~~L~~~  322 (333)
T 5mdh_A          312 MDLTAKELAEE  322 (333)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999543333

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=3.3e-58  Score=449.27  Aligned_cols=289  Identities=25%  Similarity=0.354  Sum_probs=258.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC--Cc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di--~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      |||+||||+|+||+++++.|+.+++..||+|+|+  ++  +.+.++||.|... ...+++..  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999669999999999999888899999999  76  5688899998642 23445443  24 6889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~  195 (390)
                      +|.|++||++|++++.+|+++++++++++.++||++|++++|||+|++|++    +++.++||++|+||+ |+||++|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~----~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH----HHHHcCCCHHHeeecccchhHHHHH
Confidence            999999999999999999999999999999999999999999999999865    478889999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC--CC-CHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHH
Q 016424          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC--SF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA  272 (390)
Q Consensus       196 ~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~--~~-~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~  272 (390)
                      ++||+++|++|++|+++||||||+ +++|+||++++.+  .+ ++++++++.+++++++++|++   +||+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHH
Confidence            999999999999999999999998 9999999987521  44 788899999999999999998   5689999999999


Q ss_pred             HHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424          273 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG  345 (390)
Q Consensus       273 ~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~  345 (390)
                      ++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|+..++
T Consensus       230 ~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~  300 (303)
T 1o6z_A          230 AHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYD  300 (303)
T ss_dssp             HHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC---CEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999865   477776 789998 46899999999999999999995 9999999999999966655554

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=3.6e-58  Score=450.12  Aligned_cols=290  Identities=28%  Similarity=0.461  Sum_probs=252.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +||+|||| |++|+++++.++..++++ |+|+|+++  +++.++||.|..    ...+++.   ++|+ ++++|||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 999999999999998765 99999988  678899999963    2345554   3576 88999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|++||++|.|++.+|+++++++++++.++||++|++++|||+|++++++    ++.+++|++||||+ |+||++|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~----~~~~~~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH----HHHcCCCHHHEEECCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999998654    77789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----CCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  269 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A  269 (390)
                      ++++|+++|++|++|+++||||||+ +++|+||++++.+     .+++++++++.+++++++++|++. .++|+++|++|
T Consensus       153 ~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a  230 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPA  230 (309)
T ss_dssp             HHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHH
T ss_pred             HHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHH
Confidence            9999999999999999999999998 9999999988742     257888999999999999999996 35689999999


Q ss_pred             HHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhh
Q 016424          270 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGES  347 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~  347 (390)
                      .++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..++..+++.
T Consensus       231 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  306 (309)
T 1ur5_A          231 AATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDTL  306 (309)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588886 889998 46999999999999999999995 999999999999997666655543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=7.4e-58  Score=449.24  Aligned_cols=291  Identities=22%  Similarity=0.330  Sum_probs=258.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      .+++||+|||| |.+|+++++.++.+++++||+|+|+++  +++.++||.|....  ..+++.+  ++ +++++|||+||
T Consensus         4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVi   79 (316)
T 1ldn_A            4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVV   79 (316)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEE
Confidence            35679999999 999999999999988889999999998  67889999986421  2555543  24 58899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHH
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R  193 (390)
                      +++|.|++||++|++++.+|++++++++++++++||++|++++|||+|++|+++    ++.++||++||||+ |.||++|
T Consensus        80 ia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~----~~~s~~p~~rviG~gt~lD~~r  155 (316)
T 1ldn_A           80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGSGTILDTAR  155 (316)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH----HHHhCCCHHHEEecccchHHHH
Confidence            999999999999999999999999999999999999999999999999998754    67789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----C-------CCHHHHHHHHHhhccchhhhHhhhccCC
Q 016424          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (390)
Q Consensus       194 ~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~-------~~~~~~~~l~~~v~~~~~eIi~~k~gkg  262 (390)
                      ++++||+++|++|++|+++||||||+ +++|+||++++.+    .       +++++++++.+++++++++|++.   ||
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg  231 (316)
T 1ldn_A          156 FRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KG  231 (316)
T ss_dssp             HHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHH---HS
T ss_pred             HHHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhc---cC
Confidence            99999999999999999999999998 9999999987632    1       34566899999999999999995   48


Q ss_pred             chhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHH
Q 016424          263 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCF  340 (390)
Q Consensus       263 ~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i  340 (390)
                      +++|++|.|+++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..+
T Consensus       232 ~~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l  307 (316)
T 1ldn_A          232 ATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATL  307 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHH
Confidence            8999999999999999999854   477776 789998 46999999999999999999995 99999999999999655


Q ss_pred             HHHHH
Q 016424          341 QDWLG  345 (390)
Q Consensus       341 ~~~l~  345 (390)
                      ++.++
T Consensus       308 ~~~~~  312 (316)
T 1ldn_A          308 KSVLA  312 (316)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=5.3e-58  Score=448.01  Aligned_cols=285  Identities=16%  Similarity=0.225  Sum_probs=244.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .++++||+|||| |.+|+.+++.++..++++||+|+|+++ +.+.++|+.|+.. ++++..   +|+ ++++|||+||++
T Consensus        11 ~~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~~i~~t---~d~-~~l~~aD~Vi~a   84 (303)
T 2i6t_A           11 NKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-PNVEIS---KDL-SASAHSKVVIFT   84 (303)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-TTEEEE---SCG-GGGTTCSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-CCeEEe---CCH-HHHCCCCEEEEc
Confidence            345689999999 999999999999989999999999998 7888999999654 477763   576 889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~  195 (390)
                      +|.| +|||+|+|++.+|++++++++++++++||++|++++|||+|+++++    +++.++||++||||+ |+||++|++
T Consensus        85 ag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~----~~~~~~~p~~rviG~gt~Ld~~R~~  159 (303)
T 2i6t_A           85 VNSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYV----TWKLSTFPANRVIGIGCNLDSQRLQ  159 (303)
T ss_dssp             CCC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHH----HHHhcCCCHHHeeCCCCCchHHHHH
Confidence            9997 8999999999999999999999999999999999999999988764    478899999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHH
Q 016424          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKF  275 (390)
Q Consensus       196 ~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~l  275 (390)
                      ++||+++|++|++|+++|||+||+ +++|+||+...  .+.    +++.+++++++++|++   ++|+++||+|++++++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~--~~~----~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i  229 (303)
T 2i6t_A          160 YIITNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE--VVS----HTSQVQLSNRAMELLR---VKGQRSWSVGLSVADM  229 (303)
T ss_dssp             HHHHHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC--CCC----HHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCChHHeEEEEecCCCC-Ccccccccccc--ccH----HHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHH
Confidence            999999999999999999999998 89999999632  122    4577778889999988   5689999999999999


Q ss_pred             HHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHh
Q 016424          276 ADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGE  346 (390)
Q Consensus       276 v~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~  346 (390)
                      +++|++|.+   .+++++ +++|+|  ++++|||+||++|++|+++++++++|+++|+++|++++..|++.+++
T Consensus       230 ~~ai~~~~~---~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~  300 (303)
T 2i6t_A          230 VDSIVNNKK---KVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQ  300 (303)
T ss_dssp             HHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCC---cEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999875   477776 789998  47999999999999999999986689999999999999766655543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=3.3e-57  Score=444.01  Aligned_cols=293  Identities=24%  Similarity=0.400  Sum_probs=253.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC--Cc--hHHHHHHHhcccC-C-CeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di--~~--~~g~a~DL~~~~~-~-~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      |||+|+||+|+||+++++.|+.+++..||+|+|+  ++  +.+.++||.|... . .++++..++++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999999999999999999888899999999  75  5788999998641 1 234443322236799999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      ++|.|+++|++|.+++.+|+++++++++++.++| ++|++++|||+|++|+++    ++.+++|++|+||+ |.||++|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA----LVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH----HHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH----HHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999998755    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----C---CCHHHHHHHHHhhccchhhhHhhhccCCchhHH
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  267 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~---~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s  267 (390)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+    .   ++++.++++.+++++++++|++   ++|+++||
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHH
Confidence            9999999999999999999999998 9999999988743    2   2566689999999999999998   55899999


Q ss_pred             HHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-C-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424          268 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T-ELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL  344 (390)
Q Consensus       268 ~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~-~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l  344 (390)
                      +|.++++++++|++|.+   .+++++ +++|+| . +++|||+||++|++|+++++++ +|+++|+++|++++..|+..+
T Consensus       232 ~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  307 (313)
T 1hye_A          232 PAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYC  307 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC---eEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864   477776 789998 3 5999999999999999999995 999999999999997666655


Q ss_pred             Hhh
Q 016424          345 GES  347 (390)
Q Consensus       345 ~~~  347 (390)
                      ++.
T Consensus       308 ~~~  310 (313)
T 1hye_A          308 EEV  310 (313)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=5.1e-56  Score=437.42  Aligned_cols=288  Identities=28%  Similarity=0.461  Sum_probs=256.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      +++||+|||| |++|++++..++..++++ |+|+|+++  +.+.++|+.|..    ...+++.   ++|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            4679999999 999999999999998765 99999998  678889998852    2345654   3577 899999999


Q ss_pred             EEcCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-c
Q 016424          114 IIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T  187 (390)
Q Consensus       114 Ii~ag~p~k~g~~-----r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t  187 (390)
                      |+++|.|+++|++     |.|++.+|++++++++++|.++||++|++++|||+|++|+++    ++.++||++|+||+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~----~~~~g~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH----HHhcCCChHHEEeccC
Confidence            9999999999999     999999999999999999999999999999999999997654    66778999999999 6


Q ss_pred             cccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhh
Q 016424          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  257 (390)
Q Consensus       188 ~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~  257 (390)
                      .||++|++++||+++|+++++|+++||||||+ +++|+||++++.+          .+++++++++.+++++++++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999998 9999999987632          146777899999999999999996


Q ss_pred             hccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424          258 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL  335 (390)
Q Consensus       258 k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~  335 (390)
                         ||+++||+|.++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++
T Consensus       232 ---kgs~~~~~a~a~~~~~~ai~~~~~---~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~  304 (322)
T 1t2d_A          232 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  304 (322)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             ---cCchHHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHH
Confidence               478999999999999999999864   588886 789999 46999999999999999999995 999999999999


Q ss_pred             hHHHHHHHHH
Q 016424          336 LHLCFQDWLG  345 (390)
Q Consensus       336 ~~~~i~~~l~  345 (390)
                      ++..|++.++
T Consensus       305 s~~~L~~~~~  314 (322)
T 1t2d_A          305 AIAETKRMKA  314 (322)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9964444443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=1.2e-55  Score=436.28  Aligned_cols=296  Identities=30%  Similarity=0.473  Sum_probs=261.4

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCC
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dA  110 (390)
                      +.+++|||+|||| |++|++++..|+..++++ |+|||+++  +.+.+.|+.|..    ...+++.   |+|++++++||
T Consensus         5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~a   79 (331)
T 1pzg_A            5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGA   79 (331)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTC
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCC
Confidence            3566789999999 999999999999888754 99999998  567778888753    2345664   46887799999


Q ss_pred             cEEEEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          111 DLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       111 DiVIi~ag~p~k~g~-----~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      |+||+++|.|+++|+     +|.|++.+|++++++++++|.++||++|++++|||+|++|+++    ++.++||++||||
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~----~~~~~~~~~rviG  155 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICG  155 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH----HHhcCCChhcEEe
Confidence            999999999999999     9999999999999999999999999999999999999997654    6678999999999


Q ss_pred             c-ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC----------CCHHHHHHHHHhhccchhhh
Q 016424          186 V-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----------FTQEETEYLTNRIQNGGTEV  254 (390)
Q Consensus       186 ~-t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~----------~~~~~~~~l~~~v~~~~~eI  254 (390)
                      + |.||++|++++||+++|++|++|+++|||+||+ +++|+||++++.+.          +++++++++.++++++|++|
T Consensus       156 ~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ei  234 (331)
T 1pzg_A          156 MACMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEI  234 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHH
Confidence            9 689999999999999999999999999999998 99999999876421          56677889999999999999


Q ss_pred             HhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 016424          255 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGL  332 (390)
Q Consensus       255 i~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~  332 (390)
                      ++.. ++|++.||+|.++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++.+ +|+++|+++
T Consensus       235 i~~~-~kgst~~~~a~a~~~ii~ai~~~~~---~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~  309 (331)
T 1pzg_A          235 VRFL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQ  309 (331)
T ss_dssp             HHHH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHH
T ss_pred             HHhh-cCCCccchHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHH
Confidence            9852 4689999999999999999999864   588886 789998 46999999999999999999995 999999999


Q ss_pred             HHHhHHHHHHHHHhh
Q 016424          333 FCLLHLCFQDWLGES  347 (390)
Q Consensus       333 L~~~~~~i~~~l~~~  347 (390)
                      |++++..|+..+++.
T Consensus       310 l~~s~~~l~~~~~~~  324 (331)
T 1pzg_A          310 FQKSVDDVMALNKAV  324 (331)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999997666666554

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1.4e-55  Score=435.29  Aligned_cols=291  Identities=33%  Similarity=0.535  Sum_probs=258.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      ++||+|||| |++|++++..++..++++ |+|||+++  +.+.++|+.|..    ...+++.   ++|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            469999999 999999999999998754 99999998  577788888854    2345664   3577 8999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHHH
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR  193 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~R  193 (390)
                      +++|.|++||++|.|++.+|++++++++++|.++||++|++++|||+|++++++    ++.++|||+||||+| .||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~----~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF----KEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHhcCCChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999997654    677899999999995 899999


Q ss_pred             HHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (390)
Q Consensus       194 ~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~  263 (390)
                      ++++||+++|++|++|+++|||+||+ +++|+||++++.+          .+++++++++.++++++|++|++.. ++|+
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            99999999999999999999999998 9999999987632          1467778999999999999999964 6789


Q ss_pred             hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424          264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ  341 (390)
Q Consensus       264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~  341 (390)
                      +.||+|.++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++.+ +|+++|+++|++++..++
T Consensus       242 ~~~~~a~a~~~i~~ai~~~~~---~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  317 (328)
T 2hjr_A          242 AFYAPAASAVAMAQAYLKDSK---SVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQ  317 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999865   588886 789998 46999999999999999999995 999999999999997666


Q ss_pred             HHHHhh
Q 016424          342 DWLGES  347 (390)
Q Consensus       342 ~~l~~~  347 (390)
                      +.+++.
T Consensus       318 ~~~~~~  323 (328)
T 2hjr_A          318 NLVQDL  323 (328)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=2.1e-54  Score=423.35  Aligned_cols=291  Identities=30%  Similarity=0.489  Sum_probs=257.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      |||+|||| |.+|++++..|+.++...+|+|+|+++  +.+.++|+.|..    ...+++.   ++|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 999999999999887677999999998  577777888752    2345554   3576 45999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~  194 (390)
                      +++.|++||++|.|++.+|+++++++++.|.+++|+++++++|||+|++++++    ++.+++|++|+||+ |+||++|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~----~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH----HHhcCCChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999987654    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  269 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A  269 (390)
                      ++++|+++|+++++|+++|||+||+ +++|+||++++.+.     +++++++++.+++++++++|++. .+||+++|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999997 99999999987431     56788999999999999999996 35689999999


Q ss_pred             HHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhh
Q 016424          270 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGES  347 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~  347 (390)
                      .++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..++..+++.
T Consensus       230 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  305 (310)
T 1guz_A          230 SSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKML  305 (310)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588886 789998 46999999999999999999995 999999999999996555555443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=2.4e-54  Score=422.02  Aligned_cols=283  Identities=23%  Similarity=0.318  Sum_probs=227.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||| |++|+++++.++..+++++|+|+|+++  +.+.++|+.|... ....+...  ++ +++++|||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCC
Confidence            69999999 999999999999999889999999998  5778999998652 12334332  35 478999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~  197 (390)
                      .|++||++|+|++.+|++++++++++|.++||++|++++|||++++++++    ++.+  |++||||+ |+||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~----~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA----TQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH----HHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH----HHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998755    4554  89999999 99999999999


Q ss_pred             HHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC------------CCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~------------~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      +|+++|+++++|+++||||||+ +++|+||++++.+.            ++++.++++.+++++++++|++   +||+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcH
Confidence            9999999999999999999998 99999999987431            4667789999999999999999   458999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL  344 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l  344 (390)
                      |++|.++++++++|++|.+   .+++++ +++| |.  +|||+||++|++|+++++++ +|+++|+++|++++..+++.+
T Consensus       227 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g-yg--~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  299 (304)
T 2v6b_A          227 YGIGAALARITEAVLRDRR---AVLTVSAPTPE-YG--VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFK  299 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEETT-TT--EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhCCC---cEEEEEEEECC-cC--cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   478776 7899 84  99999999999999999995 999999999999995444444


Q ss_pred             H
Q 016424          345 G  345 (390)
Q Consensus       345 ~  345 (390)
                      +
T Consensus       300 ~  300 (304)
T 2v6b_A          300 Q  300 (304)
T ss_dssp             -
T ss_pred             H
Confidence            3

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=7.4e-54  Score=422.91  Aligned_cols=295  Identities=22%  Similarity=0.288  Sum_probs=254.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----cEEEEEeCC----c--hHHHHHHHhcccCC--CeEEEEeCCCChhh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----N--TPGVTADISHMDTG--AVVRGFLGQPQLEN  105 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~-----~eL~L~Di~----~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~  105 (390)
                      +++|||+||||+|+||+++++.|+++++.     .||+|+|++    +  +.+.++||.|....  .+++.   ++|+++
T Consensus         3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~---~~~~~~   79 (329)
T 1b8p_A            3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTA---HADPMT   79 (329)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEE---ESSHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEE---ecCcHH
Confidence            45689999998899999999999988765     599999998    5  57899999996422  23333   468889


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCce
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKL  183 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kv  183 (390)
                      |++|||+||+++|.|+++|++|.+++.+|+++++++++++.++| |++|++++|||+|++|+++    ++.+ +||++|+
T Consensus        80 al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~----~~~~~~~p~~~v  155 (329)
T 1b8p_A           80 AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA----MKSAPSLPAKNF  155 (329)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGE
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH----HHHcCCCCHHHE
Confidence            99999999999999999999999999999999999999999998 9999999999999999865    5566 9999999


Q ss_pred             eecccccHHHHHHHHHHHhCCCCCCCce-EEeecccCceeeeccccCCCCCC-----CCHHH--HHHHHHhhccchhhhH
Q 016424          184 LGVTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVV  255 (390)
Q Consensus       184 iG~t~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~--~~~l~~~v~~~~~eIi  255 (390)
                      +|+|.||+.|+++++|+++|++|++|+. +|||+||+ +++|+||++++.+.     +++++  .+++.+++++++++|+
T Consensus       156 ~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii  234 (329)
T 1b8p_A          156 TAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAII  234 (329)
T ss_dssp             EECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHH
T ss_pred             EEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999995 68999998 99999999987531     22223  4789999999999999


Q ss_pred             hhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHH
Q 016424          256 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYESG  331 (390)
Q Consensus       256 ~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~-l~~Ls~~E~~  331 (390)
                      +.| |. +.++++|.++++++++|+++..+  .+++++ +++|+|  ++++|||+||+| ++|++++++ + +|+++|++
T Consensus       235 ~~k-g~-~~~~~~a~a~~~~~~ai~~~~~~--~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~  308 (329)
T 1b8p_A          235 DAR-GV-SSAASAANAAIDHIHDWVLGTAG--KWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQE  308 (329)
T ss_dssp             HHH-SS-CCHHHHHHHHHHHHHHHHHCCTT--CCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHH
T ss_pred             hcc-CC-ChHHHHHHHHHHHHHHHhcCCCC--cEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHH
Confidence            987 32 34566788999999999998422  377776 779988  589999999999 999999997 6 99999999


Q ss_pred             HHHHhHHHHHHHHHhh
Q 016424          332 LFCLLHLCFQDWLGES  347 (390)
Q Consensus       332 ~L~~~~~~i~~~l~~~  347 (390)
                      +|++++..|+..++..
T Consensus       309 ~l~~s~~~l~~~~~~~  324 (329)
T 1b8p_A          309 RINVTLNELLEEQNGV  324 (329)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999997666665544

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=4.4e-51  Score=401.35  Aligned_cols=290  Identities=26%  Similarity=0.429  Sum_probs=253.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||| |.+|++++..|+..++.++|+|+|+++  +.+.+.|+.|... ....+... + | .+++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~-d-~~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-G-D-YADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-C-C-GGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-C-C-HHHhCCCCEEEEccC
Confidence            69999999 999999999998888788999999987  5667777776431 11223322 3 5 478999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~  197 (390)
                      .|++||++|.|++.+|+++++++++.|.+++|+++++++|||++++++++    ++.++||++||||+ |.||++|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH----HHHhCCChhhEEeeCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654    56668999999999 78999999999


Q ss_pred             HHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------C-CCHHHHHHHHHhhccchhhhHhhhccCCchhH
Q 016424          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------S-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  266 (390)
Q Consensus       198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~-~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~  266 (390)
                      +|+++|++|++|+++|||+||+ +++|+||++++.+          . ++++.++++.+++++++++|++.   +|+++|
T Consensus       153 la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH---HSCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhcc---CCchHH
Confidence            9999999999999999999998 9999999987632          1 46677899999999999999995   478999


Q ss_pred             HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424          267 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL  344 (390)
Q Consensus       267 s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l  344 (390)
                      ++|.++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++.+ +|+++|+++|++++..|+..+
T Consensus       229 ~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~  304 (319)
T 1a5z_A          229 AIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAI  304 (319)
T ss_dssp             HHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999854   478886 789998 47999999999999999999995 999999999999997666665


Q ss_pred             Hhh
Q 016424          345 GES  347 (390)
Q Consensus       345 ~~~  347 (390)
                      ++.
T Consensus       305 ~~~  307 (319)
T 1a5z_A          305 NEI  307 (319)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.4e-49  Score=388.31  Aligned_cols=288  Identities=20%  Similarity=0.265  Sum_probs=247.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ||||+|||+ |.+|++++..|+..++..+|+|+|+++  +.+.+.|+.|...  ...++.++  +|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEe
Confidence            479999998 999999999998887667999999987  5677778876531  22345433  466 889999999999


Q ss_pred             CCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH
Q 016424          117 AGVPRK----PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  191 (390)
Q Consensus       117 ag~p~k----~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds  191 (390)
                      .+.|++    ||++|+|++.+|+++++++++.+.+++|+++++++|||+++++++    +++.+++|++|++|+ |+||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~----~~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITAL----FQHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHH----HHHhcCCCHHHEeecCccchH
Confidence            999999    999999999999999999999999999999999999999998754    467788999999999 99999


Q ss_pred             HHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----C---CCHHHHHHHHHhhccchhhhHhhhccCCch
Q 016424          192 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (390)
Q Consensus       192 ~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~---~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t  264 (390)
                      +|++.++++.+++++++|+++++|+||+ +++|+||++.+.+    .   ++++.|+++.+++++++++|++.|   |++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH---SSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhcc---CCc
Confidence            9999999999999999999999999998 9999999987642    1   456678999999999999999965   789


Q ss_pred             hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424          265 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW  343 (390)
Q Consensus       265 ~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~  343 (390)
                      .|++|.++++++++|++|.+   .+++++ +++|   +++|||+||++|++|+++++.+ +|+++|+++|++++..|+..
T Consensus       229 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~  301 (309)
T 1hyh_A          229 SYGVATSAIRIAKAVMADAH---AELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQR  301 (309)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCC---cEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999865   478886 7788   7999999999999999999995 99999999999999777766


Q ss_pred             HHhh
Q 016424          344 LGES  347 (390)
Q Consensus       344 l~~~  347 (390)
                      +++.
T Consensus       302 ~~~~  305 (309)
T 1hyh_A          302 FDEI  305 (309)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6555

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=3.6e-49  Score=386.98  Aligned_cols=293  Identities=30%  Similarity=0.457  Sum_probs=256.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dADi  112 (390)
                      ++++||+|||| |.+|++++..|+..++. +|+|||+++  +.+.+.|+.+..    ...+++.   ++|+ +++++||+
T Consensus         2 ~~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDi   75 (317)
T 2ewd_A            2 IERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDV   75 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCE
Confidence            34689999999 99999999999988754 699999987  466677877652    1345654   3576 88999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  191 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds  191 (390)
                      ||+++|.|++||++|+|++.+|++++++++++|.+++|+++++++|||++++++.+    ++.+++|++|++|+ |.+|+
T Consensus        76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~  151 (317)
T 2ewd_A           76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF----QKVSGLPHNKVCGMAGVLDS  151 (317)
T ss_dssp             EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHH
T ss_pred             EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHhhCCCHHHEEeccCcHHH
Confidence            99999999999999999999999999999999999999999999999999997654    56678999999999 68999


Q ss_pred             HHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccC
Q 016424          192 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGA  261 (390)
Q Consensus       192 ~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gk  261 (390)
                      .|++.++++++|+++++++++|+|+||+ +++|+||.+++.+          .+++++++++.++++.+++++++.. |+
T Consensus       152 ~r~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~  229 (317)
T 2ewd_A          152 SRFRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KT  229 (317)
T ss_dssp             HHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cC
Confidence            9999999999999999999999999998 9999999986532          2567788899988889999999864 67


Q ss_pred             CchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHH
Q 016424          262 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLC  339 (390)
Q Consensus       262 g~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~  339 (390)
                      |++.|++|.++++++++|++|.+   .+++++ +++|+| .+++|||+||++|++|+++++.+ +|+++|+++|++++..
T Consensus       230 g~~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~  305 (317)
T 2ewd_A          230 GTAYFAPAAAAVKMAEAYLKDKK---AVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINE  305 (317)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHcCCC---eEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHH
Confidence            89999999999999999998754   488886 789998 47999999999999999999995 9999999999999977


Q ss_pred             HHHHHHhh
Q 016424          340 FQDWLGES  347 (390)
Q Consensus       340 i~~~l~~~  347 (390)
                      +++.+++.
T Consensus       306 l~~~~~~~  313 (317)
T 2ewd_A          306 VNTISKVL  313 (317)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776655

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=6.5e-44  Score=350.73  Aligned_cols=297  Identities=23%  Similarity=0.324  Sum_probs=250.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----cEEEEEeCCc----hHHHHHHHhcccCC--CeEEEEeCCCChhhhh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENAL  107 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~-----~eL~L~Di~~----~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al  107 (390)
                      .++|||+|+||+|+||++++..|+.++..     .+|+|+|+++    ..+.++||.|....  .+++.   ++++++++
T Consensus         2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~---~~~~~~a~   78 (327)
T 1y7t_A            2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEA---TDDPKVAF   78 (327)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE---ESCHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEe---ccChHHHh
Confidence            35689999999999999999999887754     4999999974    46778899886421  23433   35778999


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCceee
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG  185 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG  185 (390)
                      +|+|+||.+||.++++|++|.+++..|+.+.+++++++.+++ |+++++++|||+|.++++.    ++.+ +++|.++.|
T Consensus        79 ~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~----~~~~~~~~p~~~yg  154 (327)
T 1y7t_A           79 KDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA----YKNAPGLNPRNFTA  154 (327)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEE
T ss_pred             CCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH----HHHcCCCChhheec
Confidence            999999999999999999999999999999999999999998 9999999999999887754    4555 789999999


Q ss_pred             cccccHHHHHHHHHHHhCCCCCCCce-EEeecccCceeeeccccCCCCC----C-CCHHH-HHHHHHhhccchhhhHhhh
Q 016424          186 VTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC----S-FTQEE-TEYLTNRIQNGGTEVVEAK  258 (390)
Q Consensus       186 ~t~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~t~vp~~S~~~v~~----~-~~~~~-~~~l~~~v~~~~~eIi~~k  258 (390)
                      .|.||+.|+..++++.+|+++..++. +|+|+|++ +++|.|+++.+.+    . ++++. ++++.++++++|++|+++|
T Consensus       155 ~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k  233 (327)
T 1y7t_A          155 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR  233 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999984 78999998 8999999987642    1 23332 4789999999999999987


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424          259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL  335 (390)
Q Consensus       259 ~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~  335 (390)
                       | +++++++|+++++++++|++|.+ ++.+++++ +++|+|  ++++|||+||++ ++|++++++..+|+++|+++|++
T Consensus       234 -g-~~~~~~~a~a~~~~~~~i~~~~~-~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~  309 (327)
T 1y7t_A          234 -G-ASSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEI  309 (327)
T ss_dssp             -S-SCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHH
T ss_pred             -C-CCchHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHH
Confidence             3 34456789999999999999962 12377886 779998  589999999999 99999998833999999999999


Q ss_pred             hHHHHHHHHHhh
Q 016424          336 LHLCFQDWLGES  347 (390)
Q Consensus       336 ~~~~i~~~l~~~  347 (390)
                      ++..|++.++..
T Consensus       310 s~~~l~~~~~~~  321 (327)
T 1y7t_A          310 TAQELLDEMEQV  321 (327)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            997666665544

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=5.4e-44  Score=362.71  Aligned_cols=289  Identities=13%  Similarity=0.121  Sum_probs=227.2

Q ss_pred             CCCEEEEEcCCCCcHHHH--HHHHHh--CCC-CcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPL--AMLMKI--NPL-VSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~--a~~l~~--~~~-~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      +++||+|||| |++ .+.  +..|+.  .++ ++||+|||+++ ....+.|+.+......+++.. ++|+++|++|||||
T Consensus         1 ~~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~-t~d~~~al~~AD~V   77 (417)
T 1up7_A            1 RHMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYV   77 (417)
T ss_dssp             CCCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEE
T ss_pred             CCCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEE-eCCHHHHhCCCCEE
Confidence            4689999999 876 333  234454  666 89999999998 222366666532111134332 57888999999999


Q ss_pred             EEcCCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHH
Q 016424          114 IIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  173 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~--------------------l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~  173 (390)
                      |+++|++++||++|++                    ++.+|+++++++++.|+++| +||+|++|||+|++|+++    +
T Consensus        78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~----~  152 (417)
T 1up7_A           78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFV----R  152 (417)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHH----H
T ss_pred             EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHH----H
Confidence            9999999999998853                    36899999999999999999 999999999999998654    6


Q ss_pred             HhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-----------cccCceeeeccccC---CCCC----CC
Q 016424          174 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQV---KPPC----SF  235 (390)
Q Consensus       174 ~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-----------~Hg~~t~vp~~S~~---~v~~----~~  235 (390)
                      +.+  |++||||+|+.. .|+++++|+.+|++|++|+++|+|           +||+ +++|.||..   ++++    .+
T Consensus       153 k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~~~  228 (417)
T 1up7_A          153 NYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDEDF  228 (417)
T ss_dssp             HTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTTSC
T ss_pred             HhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCCch
Confidence            764  777999998753 599999999999999999999999           9998 999999985   3321    12


Q ss_pred             ---------------------CHHHHHHH---------HHhhccchhhhH--------hhhccCCchhHHHHHHHHHHHH
Q 016424          236 ---------------------TQEETEYL---------TNRIQNGGTEVV--------EAKAGAGSATLSMAYAAVKFAD  277 (390)
Q Consensus       236 ---------------------~~~~~~~l---------~~~v~~~~~eIi--------~~k~gkg~t~~s~A~a~~~lv~  277 (390)
                                           +++.++++         .+++++++++++        +. .++|++.+  |.+++++++
T Consensus       229 ~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l-~~kg~t~~--~~~a~~ii~  305 (417)
T 1up7_A          229 PTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEEL-TKRGGSMY--STAAAHLIR  305 (417)
T ss_dssp             CHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGG-GGSTTTTH--HHHHHHHHH
T ss_pred             HHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhh-hhcCCcHH--HHHHHHHHH
Confidence                                 23334444         466777788888        22 24566645  789999999


Q ss_pred             HHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhh
Q 016424          278 ACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGES  347 (390)
Q Consensus       278 aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~  347 (390)
                      ||++|.+   .+++++ +++|.|   |+|+++++||+||++|++++.. ++|+++|+++|+..+...+..++..
T Consensus       306 AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~-~~L~~~e~~~l~~~~~~e~l~veA~  375 (417)
T 1up7_A          306 DLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAVKMYERLTIEAY  375 (417)
T ss_dssp             HHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCC---eEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeec-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999865   488887 679987   4899999999999999999998 5999999999998887666666554

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=5.2e-43  Score=358.64  Aligned_cols=280  Identities=16%  Similarity=0.188  Sum_probs=220.8

Q ss_pred             CCEEEEEcCCCCc-HHHHHHHHHh--CCC-CcEEEEEeCCc--hHH-HHHHHhc-----ccCCCeEEEEeCCCChhhhhC
Q 016424           41 GFKVAILGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPG-VTADISH-----MDTGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~v-G~~~a~~l~~--~~~-~~eL~L~Di~~--~~g-~a~DL~~-----~~~~~~v~~~~~t~dl~~al~  108 (390)
                      ++||+|||| |++ |..++..|+.  .++ .+||+|||+++  .+. .+.|+.+     .....+++.   |+|+++|++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            579999999 888 7776666665  566 89999999987  321 1234332     223345554   468889999


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  168 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l--------------------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~  168 (390)
                      |||+||+++|++++||++|+++                    +.+|+++++++++.|+++||+||+|++|||+|++|++ 
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a-  161 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEA-  161 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH-
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-
Confidence            9999999999999999998754                    7999999999999999999999999999999999764 


Q ss_pred             HHHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-----------cccCceeeeccccCCCC-----
Q 016424          169 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQVKPP-----  232 (390)
Q Consensus       169 ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-----------~Hg~~t~vp~~S~~~v~-----  232 (390)
                         +++.+  |++||||+|++. .|+++++|+.||+++++|+++|+|           +||+ +++|.|+.....     
T Consensus       162 ---~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          162 ---VLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ---HHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ---HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence               46764  778999998764 699999999999999999999999           9998 999999873211     


Q ss_pred             --------CCC---------------------CHHHH-------------HHHHHhhccchhhhH-----hhhc----cC
Q 016424          233 --------CSF---------------------TQEET-------------EYLTNRIQNGGTEVV-----EAKA----GA  261 (390)
Q Consensus       233 --------~~~---------------------~~~~~-------------~~l~~~v~~~~~eIi-----~~k~----gk  261 (390)
                              ..+                     +++.+             .++.+++++.+++++     +.|.    ++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                    011                     12222             244566777888888     4331    12


Q ss_pred             CchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          262 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       262 g~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                      |+  +++|.+++++++||++|.+   .+++++ +++|.|   ++|+++++||+||++|++++.. ++|+++|+++++..+
T Consensus       315 ~~--~~~~~~a~~ii~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~-~~L~~~e~~l~~~~~  388 (450)
T 1s6y_A          315 GG--AYYSDAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQQIK  388 (450)
T ss_dssp             CS--CCHHHHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHH
T ss_pred             cc--hHHHHHHHHHHHHHHcCCC---eEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeec-CCCCHHHHHHHHHHH
Confidence            33  3556999999999999865   488887 679987   4899999999999999999998 599999999999777


Q ss_pred             H
Q 016424          338 L  338 (390)
Q Consensus       338 ~  338 (390)
                      .
T Consensus       389 ~  389 (450)
T 1s6y_A          389 S  389 (450)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=7.9e-42  Score=333.38  Aligned_cols=291  Identities=21%  Similarity=0.360  Sum_probs=248.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC---CCeEEEEeCCCChhhhhCCCcEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~---~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      +++|||+|||| |++|++++..|+..+.+++|+|+|+++  +.+.+.|+.|...   ...++.   ++++ +++++||+|
T Consensus         5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~-~~~~~aD~V   79 (319)
T 1lld_A            5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDDP-EICRDADMV   79 (319)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESCG-GGGTTCSEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe---CCCH-HHhCCCCEE
Confidence            45689999999 999999999999988888999999987  4556777776431   233442   2354 789999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHH
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV  192 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~  192 (390)
                      |++.+.|++||++|.+++.+|+++++++++.+.+++|++++++++||++.+++++    ++.+++|++||+|. |.+|+.
T Consensus        80 ii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~----~~~~~~~~~~vig~~~~l~~~  155 (319)
T 1lld_A           80 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGSGTNLDSA  155 (319)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEECTTHHHHH
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH----HHhcCCCHHHEeeccccHhHH
Confidence            9999999999999999999999999999999999999999999999999987654    55668999999999 899999


Q ss_pred             HHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----------C--CCHHHHHHHHHhhccchhhhHhhhc
Q 016424          193 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------S--FTQEETEYLTNRIQNGGTEVVEAKA  259 (390)
Q Consensus       193 R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----------~--~~~~~~~~l~~~v~~~~~eIi~~k~  259 (390)
                      |++..+++++++++.+++.+++|+||+ +.+|+|++..+..           .  .+++.++++.+++++++.+|++++ 
T Consensus       156 r~~~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~-  233 (319)
T 1lld_A          156 RLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK-  233 (319)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSC-
T ss_pred             HHHHHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCC-
Confidence            999999999999999999999999998 8899999876531           1  233447889999999999999854 


Q ss_pred             cCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                        |++.+++|.+.++++++|++|.+   .+++++ +++|+| ..+.++++||.++++|+++++++ +|+++|+++|++++
T Consensus       234 --G~~~~~~a~~~~sm~~di~~~~~---~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~  307 (319)
T 1lld_A          234 --GATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSA  307 (319)
T ss_dssp             --CSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHH
T ss_pred             --CCchHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHH
Confidence              77889999999999999999754   466775 889998 56999999999999999999995 99999999999999


Q ss_pred             HHHHHHHHh
Q 016424          338 LCFQDWLGE  346 (390)
Q Consensus       338 ~~i~~~l~~  346 (390)
                      ..|+..+++
T Consensus       308 ~~l~~~~~~  316 (319)
T 1lld_A          308 ETLKETAAQ  316 (319)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            766665543

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.4e-41  Score=349.76  Aligned_cols=281  Identities=17%  Similarity=0.219  Sum_probs=215.5

Q ss_pred             CCEEEEEcCCCCc-HHHHHHHHHhC--CC-CcEEEEEeCCc--hHHHHHHHhcc-----cCCCeEEEEeCCCChhhhhCC
Q 016424           41 GFKVAILGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--TPGVTADISHM-----DTGAVVRGFLGQPQLENALTG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~v-G~~~a~~l~~~--~~-~~eL~L~Di~~--~~g~a~DL~~~-----~~~~~v~~~~~t~dl~~al~d  109 (390)
                      ++||+|||| |++ |..++..|+.+  ++ ..||+|||+++  +.+ ..|+.+.     ....+++.   ++|+++|++|
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~---t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAA---TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEE---ECCHHHHHcC
Confidence            359999999 888 55567677776  66 89999999998  334 3455442     23456664   4688899999


Q ss_pred             CcEEEEcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH
Q 016424          110 MDLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  169 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~r~~l--------------------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~a  169 (390)
                      ||+||+++|.++++|++|+++                    +.+|+++++++++.|+++||+||+|++|||+|++|++  
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~--  180 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEA--  180 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHH--
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH--
Confidence            999999999999999888555                    8899999999999999999999999999999998764  


Q ss_pred             HHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCC-CCCceEEee-----------c-ccCceeeeccccCCC-----
Q 016424          170 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-----------G-HAGVTILPLLSQVKP-----  231 (390)
Q Consensus       170 e~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p-~~V~~~ViG-----------~-Hg~~t~vp~~S~~~v-----  231 (390)
                        +++.+  |++||||+|++. .|+++++|+.||++| ++|+++|+|           + ||+ +.+|.||...+     
T Consensus       181 --~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~~~~~g~~  254 (472)
T 1u8x_X          181 --TRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEHVSQYGYI  254 (472)
T ss_dssp             --HHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHHHHHHSSC
T ss_pred             --HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHHHHhcCCC
Confidence              46765  788999998764 599999999999998 999999999           8 998 89999987321     


Q ss_pred             C--------CCCCHHH--------------------H----HHHHHh----------hcc----chhhhHhhhccCC---
Q 016424          232 P--------CSFTQEE--------------------T----EYLTNR----------IQN----GGTEVVEAKAGAG---  262 (390)
Q Consensus       232 ~--------~~~~~~~--------------------~----~~l~~~----------v~~----~~~eIi~~k~gkg---  262 (390)
                      +        ..+..+-                    +    +++.++          +++    ..+++++...++|   
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~  334 (472)
T 1u8x_X          255 PKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSE  334 (472)
T ss_dssp             CCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCC
T ss_pred             ccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Confidence            1        0111000                    0    122222          111    2223222110033   


Q ss_pred             chhH---HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424          263 SATL---SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL  335 (390)
Q Consensus       263 ~t~~---s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~  335 (390)
                      ++.+   ++|.+++++++||++|.+   .+++++ +++|.|   |+|+++|+||+||++|++++.. ++|+++|+++++.
T Consensus       335 ~~~~~~~~~~~~a~~ii~AI~~d~~---~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~-~~Lp~~~~~l~~~  410 (472)
T 1u8x_X          335 NSEIKIDDHASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLMEQ  410 (472)
T ss_dssp             SCSSCCCTTTHHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHhcCCC---eEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeec-CCCCHHHHHHHHH
Confidence            3444   889999999999999865   588887 679987   4899999999999999999998 5999999999985


Q ss_pred             hHH
Q 016424          336 LHL  338 (390)
Q Consensus       336 ~~~  338 (390)
                      -..
T Consensus       411 ~~~  413 (472)
T 1u8x_X          411 QVS  413 (472)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=100.00  E-value=4.1e-33  Score=284.79  Aligned_cols=281  Identities=19%  Similarity=0.183  Sum_probs=192.7

Q ss_pred             CCCEEEEEcCCCCcH--HHHHHHHHhCC-CCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIG--QPLAMLMKINP-LVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG--~~~a~~l~~~~-~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +.+||+|||| |++|  ..++..++..+ +..+|+|||+++ .......+.+.......++. .|+|+++|++||||||+
T Consensus         4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~~~~~I~-~TtD~~eAl~dADfVI~   81 (450)
T 3fef_A            4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYE-AVSTLKKALSAADIVII   81 (450)
T ss_dssp             CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTTSCEEEE-EESSHHHHHTTCSEEEE
T ss_pred             CCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhccCCeEE-EECCHHHHhcCCCEEEe
Confidence            3579999999 9985  56666666544 445999999997 11111111111111334443 26799999999999999


Q ss_pred             cCC------------CCCCCCCCHH----------HHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHH
Q 016424          116 PAG------------VPRKPGMTRD----------DLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  173 (390)
Q Consensus       116 ~ag------------~p~k~g~~r~----------~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~  173 (390)
                      +.+            +|+|+|+.|.          ..+.+|+++++++++.|+++||+||+|++|||+|++|+++    +
T Consensus        82 airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~----~  157 (450)
T 3fef_A           82 SILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL----Y  157 (450)
T ss_dssp             CCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----H
T ss_pred             ccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----H
Confidence            975            6999998765          3467999999999999999999999999999999998654    5


Q ss_pred             HhCCCCCCceeecccccHHHHHHHHHHHh----C---CCCCCCceEEee-cccCceeeeccccCCCCC------------
Q 016424          174 KAGTYDPKKLLGVTMLDVVRANTFVAEVL----G---LDPRDVDVPVVG-GHAGVTILPLLSQVKPPC------------  233 (390)
Q Consensus       174 ~~s~~p~~kviG~t~Lds~R~~~~la~~l----~---v~p~~V~~~ViG-~Hg~~t~vp~~S~~~v~~------------  233 (390)
                      +.  +|+.|+||+|+.. .++++.+|+.|    |   +++++|++.+.| ||..     +|+..+..+            
T Consensus       158 k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH~~-----w~~~~~~~G~d~~p~l~~~~~  229 (450)
T 3fef_A          158 KV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFT-----WITKASYRHIDLLPIFREFSA  229 (450)
T ss_dssp             HH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETTEE-----EEEEEEETTEEHHHHHHHHHH
T ss_pred             HH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecCeE-----eEEEEEECCEEChHHHHHHHH
Confidence            54  7889999999874 79999999999    5   779999999999 8854     222221100            


Q ss_pred             -----------------CCC--HHHHHHHHHhh---------------c------------------cchh-------hh
Q 016424          234 -----------------SFT--QEETEYLTNRI---------------Q------------------NGGT-------EV  254 (390)
Q Consensus       234 -----------------~~~--~~~~~~l~~~v---------------~------------------~~~~-------eI  254 (390)
                                       .+.  +...-++.++.               .                  .+..       +.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~  309 (450)
T 3fef_A          230 HYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQET  309 (450)
T ss_dssp             HHTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHH
Confidence                             000  00000000000               0                  0000       00


Q ss_pred             HhhhccC-CchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHH
Q 016424          255 VEAKAGA-GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYE  329 (390)
Q Consensus       255 i~~k~gk-g~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E  329 (390)
                      .+...+. .-..-..+.+++++++||++|.+   .+++++ .++|.|   ++|+++++||+||++|++++.. ++|++++
T Consensus       310 ~~~~~~~~~~~~~~~~e~~~~ii~aI~~d~~---~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~-g~Lp~~~  385 (450)
T 3fef_A          310 ERLIVQQRGVAEKASGEEGVNIIAALLGLGE---LVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILS-GALPKGV  385 (450)
T ss_dssp             HHHHHTTCCCCCSCCSCCHHHHHHHHTTSCC---EEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCC-CCCCHHH
T ss_pred             HHHhcCCcCcCcCccHHHHHHHHHHHHcCCC---eEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceeccc-CCCCHHH
Confidence            0000000 00000013567999999999865   478887 678987   5799999999999999999887 6999999


Q ss_pred             HHHHHHhHH
Q 016424          330 SGLFCLLHL  338 (390)
Q Consensus       330 ~~~L~~~~~  338 (390)
                      +++++.-..
T Consensus       386 ~~l~~~~~~  394 (450)
T 3fef_A          386 EMLAARHIS  394 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999875543

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.98  E-value=1.1e-31  Score=276.31  Aligned_cols=279  Identities=19%  Similarity=0.159  Sum_probs=192.7

Q ss_pred             CCEEEEEcCCCCcHHHH--HHHHHhC-CC-CcEEEEEeCCc--hHHHHHHHhc-----ccCCCeEEEEeCCCChhhhhCC
Q 016424           41 GFKVAILGAAGGIGQPL--AMLMKIN-PL-VSVLHLYDVVN--TPGVTADISH-----MDTGAVVRGFLGQPQLENALTG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~--a~~l~~~-~~-~~eL~L~Di~~--~~g~a~DL~~-----~~~~~~v~~~~~t~dl~~al~d  109 (390)
                      ++||+|||| |+||.+.  +..|++. ++ ..+|+|||+++  +.+ +.++.+     .....+++.   ++|+++|++|
T Consensus         3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~d   77 (480)
T 1obb_A            3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVIID   77 (480)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHTT
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhCC
Confidence            579999999 9986554  5577643 44 78999999998  333 333322     222345554   4688899999


Q ss_pred             CcEEEEcCCC------------CCCCCCCH--HH------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          110 MDLVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       110 ADiVIi~ag~------------p~k~g~~r--~~------------l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                      ||+||+++|+            |+|+|+.|  .+            ++.+|+++++++++.|+++||+||+|++|||+|+
T Consensus        78 AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi  157 (480)
T 1obb_A           78 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE  157 (480)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH
T ss_pred             CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Confidence            9999999986            67788766  44            4789999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccC---------ceeeec--------
Q 016424          164 TVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPL--------  225 (390)
Q Consensus       164 ~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~---------~t~vp~--------  225 (390)
                      +|+++    ++   +|++||||+|+++. ++++++ +.+|++|++|+++|+| ||..         ++.+|.        
T Consensus       158 ~t~~~----~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~  228 (480)
T 1obb_A          158 GTTLV----TR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIEEK  228 (480)
T ss_dssp             HHHHH----HH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHHHT
T ss_pred             HHHHH----HH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHHcc
Confidence            98654    66   67899999987554 479999 9999999999999999 6554         111221        


Q ss_pred             ---------ccc--CC-----------CCC-------CCC------H------------------HH----HHHHHHhhc
Q 016424          226 ---------LSQ--VK-----------PPC-------SFT------Q------------------EE----TEYLTNRIQ  248 (390)
Q Consensus       226 ---------~S~--~~-----------v~~-------~~~------~------------------~~----~~~l~~~v~  248 (390)
                               |+.  ..           +|.       .+.      .                  .+    +.+....+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~e  308 (480)
T 1obb_A          229 SKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITK  308 (480)
T ss_dssp             GGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHHH
Confidence                     221  00           111       111      1                  01    111111111


Q ss_pred             cchhhhHhhhccCC--------chhH----------------HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---C
Q 016424          249 NGGTEVVEAKAGAG--------SATL----------------SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---T  300 (390)
Q Consensus       249 ~~~~eIi~~k~gkg--------~t~~----------------s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~  300 (390)
                      +..+++.+...-++        .+.|                ..+.+++++++||++|.+   .++.++ .++|.+   |
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~lp  385 (480)
T 1obb_A          309 KVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNK---ARFVVNIPNKGIIHGID  385 (480)
T ss_dssp             HHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSC
T ss_pred             HHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCC---eEEEEEeeCCceeCCCC
Confidence            12222222111011        1111                112567899999999865   355565 567865   7


Q ss_pred             CccEEEEeEEEcCCceEEEccCCC-CCHHHHHH-HHHhH
Q 016424          301 ELPFFASKVRLGRQGAEEIFQLGP-LNEYESGL-FCLLH  337 (390)
Q Consensus       301 ~~~~~svPv~ig~~Gv~~i~~l~~-Ls~~E~~~-L~~~~  337 (390)
                      +|+++++||+||++|+.++.- ++ |++..+++ ++.-.
T Consensus       386 ~d~vVEvp~~v~~~G~~p~~~-g~~lP~~~~~l~~~~~~  423 (480)
T 1obb_A          386 DDVVVEVPALVDKNGIHPEKI-EPPLPDRVVKYYLRPRI  423 (480)
T ss_dssp             TTSEEEEEEEEETTEEEECCC-SSCCCHHHHHHTHHHHH
T ss_pred             CCeEEEEEEEEcCCCCEeecc-CCCCCHHHHhHHHHHHH
Confidence            899999999999999999876 68 99999999 77444

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.97  E-value=2.1e-31  Score=274.55  Aligned_cols=167  Identities=23%  Similarity=0.248  Sum_probs=131.3

Q ss_pred             CEEEEEcCCCCcHHHHHH--HHHhCC----CCcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhhhCCCc
Q 016424           42 FKVAILGAAGGIGQPLAM--LMKINP----LVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~--~l~~~~----~~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      |||+|||| |++|++..+  .++..+    ..+||+|+|+++  +.+.+.++.+..  ....+++.. |+|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~-t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVK-TESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEE-ESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEE-eCCHHHHhCCCC
Confidence            79999999 999987543  455543    357999999998  566667776643  123444432 679999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCCHHHHH---------------HHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          112 LVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       112 iVIi~ag~-------------------p~k~g~~r~~l~---------------~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      |||+++|.                   |+|+|++|.++.               .+|++++++|+++|+++||+||+||+
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999874                   568888876652               46899999999999999999999999


Q ss_pred             cCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEeecccC
Q 016424          158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG  219 (390)
Q Consensus       158 tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~  219 (390)
                      |||++++|+.+    +++++   .|++|+|+..  +....+++.||+++++|+..+.|-|+.
T Consensus       159 tNP~~i~t~a~----~~~~~---~k~vGlC~~~--~~~~~~~~~Lg~~~~~v~~~~~GlNH~  211 (477)
T 3u95_A          159 ANPVFEITQAV----RRWTG---ANIIGFCHGV--AGVYEVFERLGLDPEEVDWQVAGVNHG  211 (477)
T ss_dssp             SSCHHHHHHHH----HHHHC---CCEEEECCGG--GHHHHHHHHTTCCGGGEEEEEEEETTE
T ss_pred             cChHHHHHHHH----HHhCC---CCeEEECCCH--HHHHHHHHHhCCCHHHcEEEEeecCCC
Confidence            99999998654    56555   6999999743  344567888999999999999995554

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.61  E-value=6.9e-08  Score=94.39  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h--HH---HHHHHh---ccc--C--------CCeEEEEeCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG---VTADIS---HMD--T--------GAVVRGFLGQP  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~--~g---~a~DL~---~~~--~--------~~~v~~~~~t~  101 (390)
                      ..||+|||| |.+|+.+|..++..++  +++|||+++ .  .+   ....+.   ...  .        ..+++.   ++
T Consensus         6 ~~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~   79 (319)
T 3ado_A            6 AGDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CT   79 (319)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---EC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---cc
Confidence            359999999 9999999999999998  999999987 1  11   111111   110  0        124554   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      |+.++++|||+||-+.              .+|..+-+++-..+++++ |+++  +.||-..+...-++    ... -.|
T Consensus        80 ~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aI--laSNTSsl~is~ia----~~~-~~p  138 (319)
T 3ado_A           80 NLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVV--LSSSSSCLLPSKLF----TGL-AHV  138 (319)
T ss_dssp             CHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSE--EEECCSSCCHHHHH----TTC-TTG
T ss_pred             chHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcce--eehhhhhccchhhh----hhc-cCC
Confidence            8889999999999987              577899999999999999 5664  48999887654332    222 236


Q ss_pred             Cceeecc
Q 016424          181 KKLLGVT  187 (390)
Q Consensus       181 ~kviG~t  187 (390)
                      .|++|+.
T Consensus       139 ~r~ig~H  145 (319)
T 3ado_A          139 KQCIVAH  145 (319)
T ss_dssp             GGEEEEE
T ss_pred             CcEEEec
Confidence            7888874

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.32  E-value=1.2e-06  Score=90.17  Aligned_cols=127  Identities=18%  Similarity=0.211  Sum_probs=82.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc---------------CCCeEEEEeCCCChh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TGAVVRGFLGQPQLE  104 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~---------------~~~~v~~~~~t~dl~  104 (390)
                      ++|||+|||+ |.+|.+++..|+..+...++++||+++.+  +..+....               ....++.   ++|+.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAK--IAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            4579999999 99999999999887433489999998621  12222110               0123554   35777


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEe-cCCCcccHHHHHHHHHH
Q 016424          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~-tNPvd~~t~i~ae~~~~  174 (390)
                      +++++||+||++.+.|.+.+.++.+ -..++..+.++++.|.++.+ +.+|+.. |+|++..-.+ ++.+.+
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l-~~~l~~  151 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESI-GCILRE  151 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHH-HHHHHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHH-HHHHHH
Confidence            8899999999999888765432222 11233456667777777764 5555443 7888876443 344544

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.32  E-value=3.9e-06  Score=86.28  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCch--HHHHHHHhccc--C----------------CCeEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMD--T----------------GAVVRGF   97 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~--~g~a~DL~~~~--~----------------~~~v~~~   97 (390)
                      .+.|||+|||+ |.+|.+++..|+.. +.. ++++||+++.  .+.+..|....  .                ..+++. 
T Consensus        16 ~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~-   92 (478)
T 3g79_A           16 GPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC-   92 (478)
T ss_dssp             CSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE-
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE-
Confidence            35689999999 99999999999998 643 8999999873  33445554321  0                234664 


Q ss_pred             eCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHH
Q 016424           98 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVF  172 (390)
Q Consensus        98 ~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~  172 (390)
                        |+| .+++++||+||++.+.|...+.++    ..++..++..++.|.++. |+.+|++- |-|.+..-.+...++
T Consensus        93 --ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~il  162 (478)
T 3g79_A           93 --TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQIL  162 (478)
T ss_dssp             --ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHH
T ss_pred             --eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHH
Confidence              356 589999999999998887644321    123445666667777766 55655544 567766555443344

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.31  E-value=3.1e-06  Score=85.68  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=77.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc--C--------------CCeEEEEeCCCChhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQLEN  105 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~--~--------------~~~v~~~~~t~dl~~  105 (390)
                      |||+|||+ |.+|.+++..|+..+.  +++++|+++.+  +..+....  .              ..+++.   ++|+.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            69999999 9999999999999886  89999998621  11122110  0              124554   357778


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CC---CcEEEEe-cCCCcccHHHHHHHHHH
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CP---NATVNLI-SNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p---~a~iiv~-tNPvd~~t~i~ae~~~~  174 (390)
                      ++++||+||++.+.|......      .+...+.++++.+.++ .|   +.+|+.. |+|.+.....+.+.+.+
T Consensus        73 ~~~~aDvviiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGD------LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HhccCCEEEEEcCCCcccCCC------cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            899999999999877643221      2223344555555554 35   6766655 78887744444444444

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.30  E-value=2e-06  Score=81.92  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=77.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcc----------cC-------CCeEEEEeCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----------DT-------GAVVRGFLGQP  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~----------~~-------~~~v~~~~~t~  101 (390)
                      .+||+|||+ |.+|+.++..++..+.  ++++||+++  +......+.+.          ..       ..+++.   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            469999999 9999999999999987  999999987  22222221110          00       013444   35


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      |+.+++++||+||++..              .+..+..++...+.+++ |++++  ++|-..+...-+++   ...  .+
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~~~~~la~---~~~--~~  136 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTLLPSDLVG---YTG--RG  136 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHHH---HHS--CG
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHh---hcC--CC
Confidence            78788999999999972              23455667777788877 56655  44443333221222   221  24


Q ss_pred             Cceeecccc
Q 016424          181 KKLLGVTML  189 (390)
Q Consensus       181 ~kviG~t~L  189 (390)
                      .+++|+...
T Consensus       137 ~~~ig~h~~  145 (283)
T 4e12_A          137 DKFLALHFA  145 (283)
T ss_dssp             GGEEEEEEC
T ss_pred             cceEEEccC
Confidence            578887544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.28  E-value=5.5e-06  Score=84.49  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=77.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhccc------------CCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------------TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~------------~~~~v~~~~~t~dl~~al  107 (390)
                      |||+|||+ |.+|.+++..|+..+.  ++++||+++.  ...........            ....++.   ++|+.+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~ea~   76 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQAV   76 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHHHG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHHHH
Confidence            79999999 9999999999999887  9999999872  22221111110            0234664   35788899


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHH
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVP  166 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~  166 (390)
                      ++||+||++.+.|.+++.      ..+...+.++++.|.++. ++.+|+.. |.|.+..-.
T Consensus        77 ~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~  131 (450)
T 3gg2_A           77 PEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRL  131 (450)
T ss_dssp             GGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHH
T ss_pred             hcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHH
Confidence            999999999988865443      234556677777787776 55555555 356555433

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.27  E-value=3.8e-06  Score=83.13  Aligned_cols=114  Identities=16%  Similarity=0.218  Sum_probs=77.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhc------ccCCCeEEEEeCCCChhhhhCCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~------~~~~~~v~~~~~t~dl~~al~dA  110 (390)
                      ..+|||+|||+ |.+|.+++..|+..+.  ++.+||.++.  .....+-..      ......++.   ++|+.+++++|
T Consensus        27 ~~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~a  100 (356)
T 3k96_A           27 PFKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGV  100 (356)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTC
T ss_pred             ccCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcC
Confidence            34689999999 9999999999999886  8999999862  222111000      111234554   35788899999


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHH
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~  174 (390)
                      |+||++.  |              ...++++.+.+..+. |+.+++.++|-++.-+..+++++.+
T Consensus       101 DvVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~  149 (356)
T 3k96_A          101 TDILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT  149 (356)
T ss_dssp             CEEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH
T ss_pred             CEEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH
Confidence            9999986  2              124677788888876 6788888888765432222344444

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.25  E-value=3.3e-06  Score=81.01  Aligned_cols=126  Identities=14%  Similarity=0.192  Sum_probs=76.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHH----HHh---ccc--C------------CCe
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA----DIS---HMD--T------------GAV   93 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~----DL~---~~~--~------------~~~   93 (390)
                      +..+++||+|||+ |.+|+.++..++..+.  ++++||+++  +.....    .+.   ...  .            ..+
T Consensus        11 ~~~~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~   87 (302)
T 1f0y_A           11 KKIIVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST   87 (302)
T ss_dssp             -CCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred             ccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence            3445679999999 9999999999998886  999999986  211111    011   000  0            013


Q ss_pred             EEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHH
Q 016424           94 VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVF  172 (390)
Q Consensus        94 v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~  172 (390)
                      ++.   ++|+.+++++||+||++..              .+..+..++...+..++ |++++  +||-..+-..   ++ 
T Consensus        88 i~~---~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i~~~---~l-  144 (302)
T 1f0y_A           88 IAT---STDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSLQIT---SI-  144 (302)
T ss_dssp             EEE---ESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSSCHH---HH-
T ss_pred             eEE---ecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCCCHH---HH-
Confidence            554   3577779999999999872              22344556777777776 46654  4554443221   11 


Q ss_pred             HHhCCCCCCceeecccc
Q 016424          173 KKAGTYDPKKLLGVTML  189 (390)
Q Consensus       173 ~~~s~~p~~kviG~t~L  189 (390)
                      ..... .+.+++|+..+
T Consensus       145 ~~~~~-~~~~~~g~h~~  160 (302)
T 1f0y_A          145 ANATT-RQDRFAGLHFF  160 (302)
T ss_dssp             HTTSS-CGGGEEEEEEC
T ss_pred             HHhcC-CcccEEEEecC
Confidence            12111 24577777543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.22  E-value=5.6e-06  Score=89.35  Aligned_cols=119  Identities=17%  Similarity=0.240  Sum_probs=85.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HHH--HH-HHhc---------c-cCCCeEEEEeCCCChh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA-DISH---------M-DTGAVVRGFLGQPQLE  104 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g~--a~-DL~~---------~-~~~~~v~~~~~t~dl~  104 (390)
                      ..||+|||| |.+|+.++..+++.++  +++|+|+++  + .+.  .. .+..         . ....+++.   ++++ 
T Consensus       316 i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~-  388 (742)
T 3zwc_A          316 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST-  388 (742)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESCG-
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCcH-
Confidence            479999999 9999999999999998  999999987  1 111  11 1111         0 11235554   3454 


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCce
Q 016424          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  183 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kv  183 (390)
                      +++++||+||-+.              .+|..+.+++.+.+++++ |+++  +.||-..+-..-++    ... -.|.|+
T Consensus       389 ~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aI--lASNTSsl~i~~ia----~~~-~~p~r~  447 (742)
T 3zwc_A          389 KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAF--LCTNTSALNVDDIA----SST-DRPQLV  447 (742)
T ss_dssp             GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCE--EEECCSSSCHHHHH----TTS-SCGGGE
T ss_pred             HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCce--EEecCCcCChHHHH----hhc-CCcccc
Confidence            7799999999997              577899999999999999 5664  48999887653332    222 236789


Q ss_pred             eecc
Q 016424          184 LGVT  187 (390)
Q Consensus       184 iG~t  187 (390)
                      +|+.
T Consensus       448 ig~H  451 (742)
T 3zwc_A          448 IGTH  451 (742)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.20  E-value=8.3e-06  Score=83.00  Aligned_cols=126  Identities=18%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHH-----------HH-HhcccCCCeEEEEeCCCCh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVT-----------AD-ISHMDTGAVVRGFLGQPQL  103 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a-----------~D-L~~~~~~~~v~~~~~t~dl  103 (390)
                      ..++.+|+|||. |.||.+++..++..+.  +++-+|+|+.+  .+-           .+ +.+.....+++.   ++|.
T Consensus        18 ~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~---tt~~   91 (444)
T 3vtf_A           18 GSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF---AESA   91 (444)
T ss_dssp             TCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---CSSH
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE---EcCH
Confidence            556789999999 9999999999998887  89999999721  111           01 111112346775   5688


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHH
Q 016424          104 ENALTGMDLVIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVF  172 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~  172 (390)
                      .+++++||++|++.+.|.++..+ .+..+   ....+.+++.+...++..+|++= |-|++..-.++..++
T Consensus        92 ~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l  159 (444)
T 3vtf_A           92 EEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAV  159 (444)
T ss_dssp             HHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHH
T ss_pred             HHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHH
Confidence            89999999999999999765432 11111   23456666666666666655443 688877654443333

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.20  E-value=3.5e-06  Score=84.56  Aligned_cols=113  Identities=18%  Similarity=0.269  Sum_probs=74.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc--------------CCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~--------------~~~~v~~~~~t~dl~~al  107 (390)
                      |||+|||+ |.||.+++..|+. +.  +++++|+++.+  +..+....              ...+++.   ++|+.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHH--HHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            69999999 9999999999987 64  89999998621  11222111              0123454   35677889


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCcccHHHH
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIA  168 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv-~tNPvd~~t~i~  168 (390)
                      ++||+||++.+.|...+..+.|     ...+.++++.+.+..|+.+|+. .|||.+....+.
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~  128 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMR  128 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH
Confidence            9999999998777432222222     1234445555555567787766 699998875543

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.19  E-value=2.4e-06  Score=85.65  Aligned_cols=131  Identities=18%  Similarity=0.326  Sum_probs=70.6

Q ss_pred             hHHhhHHHHHHhccCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCC------CcEEEEEeCCc-
Q 016424            5 SEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL------VSVLHLYDVVN-   77 (390)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~------~~eL~L~Di~~-   77 (390)
                      |.+++|+.+.+.|+-+..-+..    ..+......++.||+|||| |.-|++++..|..++.      -.++.||..++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e   76 (391)
T 4fgw_A            2 SAAADRLNLTSGHLNAGRKRSS----SSVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEE   76 (391)
T ss_dssp             -----------------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCB
T ss_pred             cchhhHHHHHhhhhcccccccc----ccccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchH
Confidence            5578899999999987655432    1111112567889999999 9999999998887531      23699998775 


Q ss_pred             h--HHHHHHHh--ccc--------CCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 016424           78 T--PGVTADIS--HMD--------TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI  145 (390)
Q Consensus        78 ~--~g~a~DL~--~~~--------~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I  145 (390)
                      .  ...+..+.  |..        .+..++.   ++|+.+++++||+||+..  |              ...++++.+++
T Consensus        77 ~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---t~dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l  137 (391)
T 4fgw_A           77 INGEKLTEIINTRHQNVKYLPGITLPDNLVA---NPDLIDSVKDVDIIVFNI--P--------------HQFLPRICSQL  137 (391)
T ss_dssp             SSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---ESCHHHHHTTCSEEEECS--C--------------GGGHHHHHHHH
T ss_pred             hhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---eCCHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHh
Confidence            1  22333343  321        2346665   469999999999999975  2              22467888888


Q ss_pred             HHhC-CCcEEEEecC
Q 016424          146 AKCC-PNATVNLISN  159 (390)
Q Consensus       146 ~~~~-p~a~iiv~tN  159 (390)
                      ..+- ++..++.++-
T Consensus       138 ~~~~~~~~~iv~~~K  152 (391)
T 4fgw_A          138 KGHVDSHVRAISCLK  152 (391)
T ss_dssp             TTTSCTTCEEEECCC
T ss_pred             ccccCCCceeEEecc
Confidence            8775 5666776653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.17  E-value=5.6e-06  Score=84.01  Aligned_cols=118  Identities=22%  Similarity=0.280  Sum_probs=74.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHH--------Hhccc--CCCeEEEEeCCCChhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD--------ISHMD--TGAVVRGFLGQPQLEN  105 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~D--------L~~~~--~~~~v~~~~~t~dl~~  105 (390)
                      ..++|||+|||+ |.+|.+++..|+. +.  ++++||+++.  ......        +.+..  ....++.   ++|+.+
T Consensus        33 ~~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~---ttd~~e  105 (432)
T 3pid_A           33 GSEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA---TTDKHD  105 (432)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHH
T ss_pred             ccCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEE---EcCHHH
Confidence            456789999999 9999999998887 65  9999999872  111110        11000  0124554   468889


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHH
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPI  167 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i  167 (390)
                      ++++||+||++...|..+....     .+...+++.++.|.+..|+++|+.- |.|.+..-.+
T Consensus       106 a~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l  163 (432)
T 3pid_A          106 AYRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDI  163 (432)
T ss_dssp             HHTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHH
T ss_pred             HHhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHH
Confidence            9999999999876554322111     1233344555555555678876655 5777766544

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.17  E-value=5.6e-06  Score=84.63  Aligned_cols=102  Identities=15%  Similarity=0.211  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH--HH----HHhccc---------CCCeEEEEeCCCChh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TA----DISHMD---------TGAVVRGFLGQPQLE  104 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~--a~----DL~~~~---------~~~~v~~~~~t~dl~  104 (390)
                      +.+||+|||+ |.+|..++..++..+.  +|++||+++.++.  ..    .+....         ...+++.   ++|+ 
T Consensus        53 ~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-  125 (460)
T 3k6j_A           53 DVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-  125 (460)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-
Confidence            3579999999 9999999999999987  9999999873221  11    111110         1135665   3566 


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCccc
Q 016424          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  164 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~  164 (390)
                      +++++||+||.+.              ..+..+.+++...+.+++ |++++  +||-..+-
T Consensus       126 ~al~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~  170 (460)
T 3k6j_A          126 HKLSNCDLIVESV--------------IEDMKLKKELFANLENICKSTCIF--GTNTSSLD  170 (460)
T ss_dssp             GGCTTCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC
T ss_pred             HHHccCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCCEE--EecCCChh
Confidence            5899999999987              234566777888888887 56655  46655443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.13  E-value=4.9e-06  Score=85.51  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=74.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc----c------------CCCeEEEEeCCCChh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----D------------TGAVVRGFLGQPQLE  104 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~----~------------~~~~v~~~~~t~dl~  104 (390)
                      .|||+|||+ |.+|.+++..|+..+.  ++++||+++.+  +..+...    .            ...+++.   ++|+.
T Consensus         8 ~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~--v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~~   79 (478)
T 2y0c_A            8 SMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAK--IDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDIE   79 (478)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCHH
T ss_pred             CceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCHH
Confidence            589999999 9999999999999887  89999998621  1112211    0            0124554   45787


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCcc
Q 016424          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS-NPVNS  163 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t-NPvd~  163 (390)
                      +++++||+||++.+.|.+...      ..+...+.++++.|.++. |+.+|++.| -|.+.
T Consensus        80 ~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt  134 (478)
T 2y0c_A           80 AAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGT  134 (478)
T ss_dssp             HHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCc
Confidence            899999999999988764332      133455666777777766 566655543 34443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.03  E-value=1.2e-05  Score=86.79  Aligned_cols=101  Identities=23%  Similarity=0.353  Sum_probs=70.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HHHH--HH-Hhccc------------CCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVT--AD-ISHMD------------TGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g~a--~D-L~~~~------------~~~~v~~~~~t~d  102 (390)
                      ++||+|||+ |.+|..++..++..++  ++++||+++  + .+..  .+ +....            ...+++.   ++|
T Consensus       312 ~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~d  385 (725)
T 2wtb_A          312 IKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SLD  385 (725)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ESS
T ss_pred             CcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eCC
Confidence            578999999 9999999999999887  899999987  1 1111  11 11100            1235665   346


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCccc
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  164 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~  164 (390)
                      + +++++||+||++.              ..+..+.+++...+.++++ +++  ++||...+-
T Consensus       386 ~-~~~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~~I--lasntStl~  431 (725)
T 2wtb_A          386 Y-ESFRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQHCI--LASNTSTID  431 (725)
T ss_dssp             S-GGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCE--EEECCSSSC
T ss_pred             H-HHHCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcE--EEeCCCCCC
Confidence            6 7899999999997              2345566777788888885 554  367776553

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.02  E-value=3.2e-05  Score=78.97  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHh--------c--c---c-CCCeEEEEeCCCCh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS--------H--M---D-TGAVVRGFLGQPQL  103 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~--------~--~---~-~~~~v~~~~~t~dl  103 (390)
                      ..+||+|||+ |.+|..++..++..+.  ++++||+++  +......+.        .  .   . .....+.   ++|+
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~~  109 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST  109 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESCG
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCCH
Confidence            3579999999 9999999999999887  899999987  111111110        1  0   0 0122343   2466


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccH
Q 016424          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  165 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t  165 (390)
                       +++++||+||++..              .+..+.+++...+..++ |++++  +||...+-+
T Consensus       110 -~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~  155 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNV  155 (463)
T ss_dssp             -GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCH
T ss_pred             -HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCH
Confidence             78999999999972              23556667777788887 56655  457766544

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.01  E-value=1.8e-05  Score=80.78  Aligned_cols=128  Identities=17%  Similarity=0.172  Sum_probs=79.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc---------------cCCCeEEEEeCCCCh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---------------DTGAVVRGFLGQPQL  103 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~---------------~~~~~v~~~~~t~dl  103 (390)
                      .++|||+|||+ |.+|.+++..|+..+...++++||+++.+  +..+...               .....++.   ++|+
T Consensus         3 ~~~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~~d~~~~~--~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~   76 (467)
T 2q3e_A            3 FEIKKICCIGA-GYVGGPTCSVIAHMCPEIRVTVVDVNESR--INAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNI   76 (467)
T ss_dssp             CCCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCH
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCH
Confidence            45689999999 99999999999887322389999998621  1122110               00123554   3577


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 016424          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~  174 (390)
                      .+++++||+||++.+.|........+ -..+...+.+.++.+.++. |+.+|+.. |+|.+..-.+ ++.+.+
T Consensus        77 ~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l-~~~l~~  147 (467)
T 2q3e_A           77 DDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESI-RRIFDA  147 (467)
T ss_dssp             HHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHH-HHHHHH
T ss_pred             HHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHH-HHHHHH
Confidence            78899999999998777643211000 0123345666777777764 56666555 6787764333 344544

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.00  E-value=1.3e-05  Score=77.41  Aligned_cols=119  Identities=20%  Similarity=0.240  Sum_probs=75.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHH-HhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~D-L~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+||+|||+ |.+|..+|..++ .+.  ++++||+++ ....+.+ +.+.. ...++..   +|+. ++++||+||.+. 
T Consensus        12 ~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~~---~~~~-~~~~aDlVieav-   81 (293)
T 1zej_A           12 HMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEFT---TTLE-KVKDCDIVMEAV-   81 (293)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEEE---SSCT-TGGGCSEEEECC-
T ss_pred             CCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEEe---CCHH-HHcCCCEEEEcC-
Confidence            479999999 999999999999 887  999999987 2112222 21111 1356643   4664 499999999986 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeeccccc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  190 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Ld  190 (390)
                                   ..+..+.+.+...+... |++++  +||-..+-...+    ..... .+.|++|+..++
T Consensus        82 -------------pe~~~vk~~l~~~l~~~-~~~Il--asntSti~~~~~----a~~~~-~~~r~~G~Hf~~  132 (293)
T 1zej_A           82 -------------FEDLNTKVEVLREVERL-TNAPL--CSNTSVISVDDI----AERLD-SPSRFLGVHWMN  132 (293)
T ss_dssp             -------------CSCHHHHHHHHHHHHTT-CCSCE--EECCSSSCHHHH----HTTSS-CGGGEEEEEECS
T ss_pred             -------------cCCHHHHHHHHHHHhcC-CCCEE--EEECCCcCHHHH----HHHhh-cccceEeEEecC
Confidence                         23344555665667777 99865  455444332211    12111 245788876655

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.99  E-value=1.7e-05  Score=81.66  Aligned_cols=101  Identities=22%  Similarity=0.311  Sum_probs=69.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHH----HhcccC------------CCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTAD----ISHMDT------------GAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~D----L~~~~~------------~~~v~~~~~t~d  102 (390)
                      .+||+|||+ |.+|..++..++..+.  +|++||+++  +......    +.....            ..+++.   ++|
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            469999999 9999999999999887  899999987  2221111    111110            124554   346


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCccc
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  164 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~  164 (390)
                      + +++++||+||.+.              ..+..+.+++...+.+++ |++++  +||-..+-
T Consensus        79 ~-~~~~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~~Il--asntSti~  124 (483)
T 3mog_A           79 I-HALAAADLVIEAA--------------SERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS  124 (483)
T ss_dssp             G-GGGGGCSEEEECC--------------CCCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC
T ss_pred             H-HHhcCCCEEEEcC--------------CCcHHHHHHHHHHHHHhhccCcEE--EecCCCCC
Confidence            6 6799999999986              224556677778888887 56644  45655543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.94  E-value=4.6e-05  Score=72.33  Aligned_cols=120  Identities=20%  Similarity=0.272  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc----CCC-----eEEEEeCCCChhhhhCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----TGA-----VVRGFLGQPQLENALTGM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~----~~~-----~v~~~~~t~dl~~al~dA  110 (390)
                      ++|||+|||+ |.+|+.++..|...+.  ++.+||.++..  ...+.+..    ...     .++..+ ..+..++++++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   75 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAH--IEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQV   75 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCC
Confidence            4689999999 9999999999998886  89999997621  11121110    000     112111 11222344599


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-eccc
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTM  188 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~  188 (390)
                      |+||++...                ..+.++.+.+..+. |+.+++.++|.++...     .+.+  .+++.+++ |.+.
T Consensus        76 d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~-----~l~~--~~~~~~vi~g~~~  132 (316)
T 2ew2_A           76 DLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGHED-----VLEK--YVPKENILVGITM  132 (316)
T ss_dssp             SEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCTHH-----HHTT--TSCGGGEEEEEEC
T ss_pred             CEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCcHH-----HHHH--HcCCccEEEEEee
Confidence            999998721                12456666777665 6888888888876432     2222  35556777 5443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.90  E-value=7.1e-05  Score=68.22  Aligned_cols=108  Identities=16%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeE-EEEeC--CCChhhhhCCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV-RGFLG--QPQLENALTGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v-~~~~~--t~dl~~al~dADiVIi~  116 (390)
                      +.|||.|+||+|++|+.++..|...+.  +|++++.+....  .++.+.    .+ +.+.+  +.++.+++.++|+||..
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~--~~~~~~----~~~~~~~~Dl~~~~~~~~~~~D~vi~~   91 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQG--PELRER----GASDIVVANLEEDFSHAFASIDAVVFA   91 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGH--HHHHHT----TCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHH--HHHHhC----CCceEEEcccHHHHHHHHcCCCEEEEC
Confidence            457999999999999999999998886  899999986221  112111    11 11111  13567889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|....  ......+..|+.-...+.+.+.+.... .++++|
T Consensus        92 ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  130 (236)
T 3e8x_A           92 AGSGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVS  130 (236)
T ss_dssp             CCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCCCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            986542  345566777888888888888877644 455554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.88  E-value=8.9e-05  Score=75.52  Aligned_cols=119  Identities=14%  Similarity=0.164  Sum_probs=80.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc----------------CCCeEEEEeCCCChhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN  105 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~----------------~~~~v~~~~~t~dl~~  105 (390)
                      .+|+|||+ |.+|.+++..|+..+.  ++++||+++.+  +..|....                ....++.   ++|+.+
T Consensus         9 ~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~k--v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~e   80 (446)
T 4a7p_A            9 VRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARK--IELLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLAE   80 (446)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTT--HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHHH
Confidence            58999999 9999999999999987  99999999721  12222210                1234665   468889


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~  174 (390)
                      ++++||+||++.+.|...+..     .-++..++++++.|.++. |+.+++.. |-|.+..-.+ ++.+.+
T Consensus        81 a~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l-~~~l~e  145 (446)
T 4a7p_A           81 GVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEV-ERIIAE  145 (446)
T ss_dssp             HHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHH-HHHHHH
T ss_pred             HHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHH-HHHHHH
Confidence            999999999999888653111     123445666677777765 56666555 4666655444 344443

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.86  E-value=4.4e-05  Score=68.81  Aligned_cols=99  Identities=17%  Similarity=0.213  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |||+||||+|.+|+.++..|...+.  ++.++|.+..  .....++.......++..    +++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            6899999449999999999988876  8999999762  222222211000123442    2567889999999998631


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      .                .++++.+.+....++.+++..+|+++
T Consensus        75 ~----------------~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 E----------------HAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             H----------------HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             h----------------hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            1                12233333433335788999999876

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.84  E-value=3.9e-05  Score=70.27  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEE-EeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L-~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      .++|||+|||+ |.+|..++..|...+.  ++.+ +|++.  ....+.++.     ....  .  ++ .++++++|+||+
T Consensus        21 m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~--~--~~-~~~~~~aDvVil   87 (220)
T 4huj_A           21 QSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVK--A--VE-LKDALQADVVIL   87 (220)
T ss_dssp             GGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEE--E--CC-HHHHTTSSEEEE
T ss_pred             hcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCcc--c--Ch-HHHHhcCCEEEE
Confidence            34689999998 9999999999988876  7888 99986  233333332     1222  1  23 467899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      +..    +            ..+.++.+.+.. .++.+++.++||..
T Consensus        88 avp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           88 AVP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             ESC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             eCC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            862    1            124455555554 46778888999985

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.84  E-value=6.2e-05  Score=71.66  Aligned_cols=98  Identities=12%  Similarity=0.171  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ++||+|||+ |.+|..++..|...+. ..+|.+||++...  ..++.+..   .++..   +|..+++++||+||++.  
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~~---gi~~~---~~~~~~~~~aDvVilav--   71 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEKC---GVHTT---QDNRQGALNADVVVLAV--   71 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHTT---CCEEE---SCHHHHHSSCSEEEECS--
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHHc---CCEEe---CChHHHHhcCCeEEEEe--
Confidence            479999999 9999999999988874 5689999998721  12222211   23332   46678999999999987  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCCcc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVNS  163 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~tNPvd~  163 (390)
                        +|.            .+.++.+.+..+  .++.+++.+++.+.+
T Consensus        72 --~p~------------~~~~vl~~l~~~~l~~~~iiiS~~agi~~  103 (280)
T 3tri_A           72 --KPH------------QIKMVCEELKDILSETKILVISLAVGVTT  103 (280)
T ss_dssp             --CGG------------GHHHHHHHHHHHHHTTTCEEEECCTTCCH
T ss_pred             --CHH------------HHHHHHHHHHhhccCCCeEEEEecCCCCH
Confidence              221            244555666655  466677777776653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.82  E-value=7e-05  Score=69.68  Aligned_cols=101  Identities=16%  Similarity=0.164  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH------------HHHHhcccCCCeEEEEeCCCChhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------------TADISHMDTGAVVRGFLGQPQLEN  105 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~------------a~DL~~~~~~~~v~~~~~t~dl~~  105 (390)
                      ....+||+|||+ |.+|.+++..|+..+.  +|.+||++.....            ..++....  ..+..    ++..+
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH--PHVHL----AAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS--TTCEE----EEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc--Cceec----cCHHH
Confidence            445689999999 9999999999998886  8999999863200            22332211  12222    25678


Q ss_pred             hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      ++++||+||++...+            .-..++.++.   ...-++.+|+.++||.+
T Consensus        87 ~~~~aDvVilavp~~------------~~~~~~~~i~---~~~l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           87 VAAGAELVVNATEGA------------SSIAALTAAG---AENLAGKILVDIANPLD  128 (245)
T ss_dssp             HHHHCSEEEECSCGG------------GHHHHHHHHC---HHHHTTSEEEECCCCEE
T ss_pred             HHhcCCEEEEccCcH------------HHHHHHHHhh---hhhcCCCEEEECCCCCC
Confidence            899999999986321            1122333331   22227889999999873

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.77  E-value=7.9e-05  Score=72.03  Aligned_cols=121  Identities=14%  Similarity=0.145  Sum_probs=73.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHH---HhcccCCCeEEE--EeCCCChhhhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD---ISHMDTGAVVRG--FLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~D---L~~~~~~~~v~~--~~~t~dl~~al~dADiVIi~  116 (390)
                      |||+|||+ |.+|..++..|...+.  ++.++|.++......+   +.... ....+.  ...++|..++.+++|+||++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~~-~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSAT-LGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEETT-TCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeecC-CCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            79999999 9999999999998876  9999999763111111   11101 122221  00124555555599999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee-cccc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTML  189 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG-~t~L  189 (390)
                      .-..    .            +.++.+.+..+ .|+..|+.+.|-++..-.     +.+.  +|..+|++ ++..
T Consensus        79 vK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~-----l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           79 IKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPE-----VAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             CCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHH-----HHHH--STTSCEEEEEEEE
T ss_pred             cCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHH-----HHHH--CCCCcEEEEEEEe
Confidence            6322    1            11334445444 367888889999876532     2332  55567774 4554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.73  E-value=4.1e-05  Score=82.38  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hH-HH--HHH-H---hcccC---------CCeEEEEeCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GV--TAD-I---SHMDT---------GAVVRGFLGQP  101 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~-g~--a~D-L---~~~~~---------~~~v~~~~~t~  101 (390)
                      +.+||+|||+ |.+|+.++..++..++  +|++||+++  +. +.  ..+ +   .....         ..+++.   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            4579999999 9999999999999887  899999987  11 11  111 1   11100         123564   34


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~  163 (390)
                      |+ +++++||+||++.              ..+..+.+++...+.+++ |++++  +||-..+
T Consensus       387 d~-~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CH-HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            66 7899999999997              233556667777888887 56644  5665544

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.73  E-value=0.00018  Score=69.52  Aligned_cols=67  Identities=19%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .++|||+|||+ |.+|..++..|...+.  +|++||++..  .+.++...    .++.   ++++.+++++||+||++.
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~----g~~~---~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAAL----GATI---HEQARAAARDADIVVSML   95 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTT----TCEE---ESSHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHC----CCEe---eCCHHHHHhcCCEEEEEC
Confidence            45689999999 9999999999998886  8999999862  22233322    2333   247789999999999986

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.72  E-value=7.8e-05  Score=73.59  Aligned_cols=103  Identities=13%  Similarity=0.177  Sum_probs=68.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC-----CcEEEEEeCCch-H--HHHHHHhc--cc--------CCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT-P--GVTADISH--MD--------TGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~-----~~eL~L~Di~~~-~--g~a~DL~~--~~--------~~~~v~~~~~t~d  102 (390)
                      +|||+|||+ |.+|+.++..|...+.     ..++.+||.++. .  ..+..+..  ..        ....++.   ++|
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~~~   96 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---HSD   96 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---ESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---ECC
Confidence            469999999 9999999998877650     138999999763 0  02222321  10        1123554   346


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----hC-CCcEEEEecCCCcc
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK----CC-PNATVNLISNPVNS  163 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~----~~-p~a~iiv~tNPvd~  163 (390)
                      +.+++++||+||++...                ..+.++.+.+..    +. |+.+++..+|-++.
T Consensus        97 ~~ea~~~aDvVilav~~----------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           97 LASVINDADLLIFIVPC----------------QYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             THHHHTTCSEEEECCCH----------------HHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             HHHHHcCCCEEEEcCCH----------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            67889999999998621                246677777776    44 67888888886544

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.72  E-value=9.5e-05  Score=71.95  Aligned_cols=102  Identities=19%  Similarity=0.247  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC-----CcEEEEEeCCch-----HHHHHHHhccc--------CCCeEEEEeCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT-----PGVTADISHMD--------TGAVVRGFLGQPQ  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~-----~~eL~L~Di~~~-----~g~a~DL~~~~--------~~~~v~~~~~t~d  102 (390)
                      +|||+|||+ |.+|+.++..|...+.     ..++.+||.++.     ......-.+..        ....++.   ++|
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~   83 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---VPD   83 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---ESS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---EcC
Confidence            469999999 9999999998887651     138999999763     32222111110        0123454   357


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd  162 (390)
                      +.+++++||+||++....                .+.++.+.+..+. |+.+++..+|-++
T Consensus        84 ~~~~~~~aD~Vilav~~~----------------~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           84 VVQAAEDADILIFVVPHQ----------------FIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHHTTCSEEEECCCGG----------------GHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHHcCCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            778899999999996211                2456666776665 6788888888654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.69  E-value=0.00015  Score=70.13  Aligned_cols=120  Identities=13%  Similarity=0.174  Sum_probs=75.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCC--cEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~--~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .++|||+|||+ |.+|..++..|...+..  .+|.+||.+.....+..+...  .  ++..   ++..+++++||+||++
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~--G--~~~~---~~~~e~~~~aDvVila   91 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKM--G--VKLT---PHNKETVQHSDVLFLA   91 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHH--T--CEEE---SCHHHHHHHCSEEEEC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHc--C--CEEe---CChHHHhccCCEEEEE
Confidence            44579999999 99999999999887732  479999997521122223221  1  3332   3567889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      .. |   .            .+.++...+..+. |+.+|+.++|.+..- . +.+.+.+.  ++..++++.
T Consensus        92 v~-~---~------------~~~~vl~~l~~~l~~~~ivvs~s~gi~~~-~-l~~~l~~~--~~~~~vv~~  142 (322)
T 2izz_A           92 VK-P---H------------IIPFILDEIGADIEDRHIVVSCAAGVTIS-S-IEKKLSAF--RPAPRVIRC  142 (322)
T ss_dssp             SC-G---G------------GHHHHHHHHGGGCCTTCEEEECCTTCCHH-H-HHHHHHTT--SSCCEEEEE
T ss_pred             eC-H---H------------HHHHHHHHHHhhcCCCCEEEEeCCCCCHH-H-HHHHHhhc--CCCCeEEEE
Confidence            73 2   1            2445556666554 678888888887642 2 23333322  344567755

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.69  E-value=9.9e-05  Score=67.11  Aligned_cols=77  Identities=25%  Similarity=0.350  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      .++||+|||+ |.+|+.++..|...+.  ++.+||.++.                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            4579999998 9999999999988876  8999998643                           4679999999873 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      +               ..++++.+.+..+.++++++.++|+++
T Consensus        67 ~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            1               113344444444334788888999776

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.68  E-value=0.00019  Score=69.36  Aligned_cols=115  Identities=18%  Similarity=0.228  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHH-Hhccc----CCCeEEEEeCCCChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD-ISHMD----TGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~D-L~~~~----~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      -.++||+|||+ |.+|..++..|...+.  ++.+| .++.  .....+ +....    ....++.   ++|. ++++++|
T Consensus        17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~D   88 (318)
T 3hwr_A           17 FQGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSA---SSDP-SAVQGAD   88 (318)
T ss_dssp             ---CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEE---ESCG-GGGTTCS
T ss_pred             ccCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeee---eCCH-HHcCCCC
Confidence            34679999999 9999999999998886  89999 6652  111111 00000    0112332   2455 5579999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      +||++....                .+.++.+.+..+. |+.+|+.++|.++....+     .+.  +| +++++
T Consensus        89 ~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l-----~~~--~~-~~vl~  139 (318)
T 3hwr_A           89 LVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENADTL-----RSL--LE-QEVAA  139 (318)
T ss_dssp             EEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHH-----HHH--CC-SEEEE
T ss_pred             EEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHH-----HHH--cC-CcEEE
Confidence            999986221                1356666676654 788888899999875322     232  55 67774

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.68  E-value=6.3e-05  Score=70.02  Aligned_cols=91  Identities=18%  Similarity=0.256  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCC--cEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~--~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +|||+|||+ |.+|+.++..|...+..  .++.+||.+...          .  .++.   +++..+++++||+||++..
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~----------~--g~~~---~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN----------T--TLNY---MSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS----------S--SSEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc----------C--ceEE---eCCHHHHHhcCCEEEEEeC
Confidence            579999999 99999999988876621  479999997632          1  1232   3466788999999999973


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                       |.               .+.++.+.+..+.++..++..+|.++.
T Consensus        68 -~~---------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           68 -PD---------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             -TT---------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             -HH---------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence             21               144555666666678888888888775

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.67  E-value=0.00017  Score=69.83  Aligned_cols=93  Identities=18%  Similarity=0.246  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhh-hhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN-ALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~-al~dADiVIi~ag  118 (390)
                      .+||+|||+ |.+|..++..|...+...+|++||.+. ....+.++.     .....   ++++.+ ++++||+||++..
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G-----~~~~~---~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----IIDEG---TTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SCSEE---ESCTTGGGGGCCSEEEECSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC-----Ccchh---cCCHHHHhhccCCEEEEeCC
Confidence            479999998 999999999999988766899999986 222222221     11122   245667 8999999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      ..                .+.++.+.+..+. |+++|+.++
T Consensus       104 ~~----------------~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          104 VR----------------TFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             GG----------------GHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HH----------------HHHHHHHHHhhccCCCcEEEECC
Confidence            11                1234445555554 677766554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.67  E-value=0.00013  Score=69.12  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ++||+|||+ |.+|..++..|...+...++.+||.+....  ..+....  .....   ++++.+++++||+||++...+
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g--~~~~~---~~~~~~~~~~aDvVilavp~~   77 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERG--IVDEA---TADFKVFAALADVIILAVPIK   77 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTT--SCSEE---ESCTTTTGGGCSEEEECSCHH
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcC--Ccccc---cCCHHHhhcCCCEEEEcCCHH
Confidence            579999999 999999999888764334899999986211  1122211  11122   235667889999999986211


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHh-C-CCcEEEEecCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKC-C-PNATVNLISNP  160 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~-p~a~iiv~tNP  160 (390)
                                      .+.++.+.+..+ . |+.+|+.++|-
T Consensus        78 ----------------~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           78 ----------------KTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             ----------------HHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             ----------------HHHHHHHHHHhcCCCCCCEEEECCCC
Confidence                            235566666665 3 67777666553

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.67  E-value=0.00048  Score=64.79  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=61.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC-CCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-dADiVIi~ag~  119 (390)
                      ++||+|||+ |.+|..++..|...+...++++||.+....  ..+....  .....   ++|+.++++ +||+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g--~~~~~---~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLG--IIDEG---TTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTT--SCSEE---ESCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHCC--Ccccc---cCCHHHHhcCCCCEEEEcCCH
Confidence            469999999 999999999998877544899999986211  1121111  11122   235678899 99999998621


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  160 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNP  160 (390)
                      .                ...++...+..+ .|+++|+.++|-
T Consensus        73 ~----------------~~~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           73 R----------------TFREIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             H----------------HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             H----------------HHHHHHHHHHhhCCCCcEEEECCCC
Confidence            1                122444445444 467777776654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.66  E-value=0.00013  Score=65.84  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi  115 (390)
                      ++|||.|+||+|++|+.++..|...+.  +|+++|.+...     +.+.  ...++.+.+.    .++.++++++|+||.
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEK-----IKIE--NEHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGG-----CCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCccc-----chhc--cCceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            468999999999999999999998885  99999997621     1111  1334443321    235678999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++|....    ..+++..|+.....+.+.+.+.... .++.+|
T Consensus        74 ~a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           74 AFNPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             eCcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            9876422    1124566888888888888887644 455444

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.66  E-value=0.00072  Score=64.31  Aligned_cols=116  Identities=13%  Similarity=0.016  Sum_probs=77.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEE-eC----CCChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF-LG----QPQLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~-~~----t~dl~~al~dAD  111 (390)
                      -++++|.|+||+|++|+.++..|...+.  +|++.|.+..  ......+.+.. ...++.+ .+    ..++.++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            3457999999999999999999988876  8999998752  11222221111 1234433 22    234556778999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||-++|.... +.+..+.+..|+.-...+.+.+.+......++++|
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~S  131 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            99999986542 24556678889988888888887533334566654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.65  E-value=7.3e-05  Score=63.55  Aligned_cols=94  Identities=13%  Similarity=0.154  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .+||+|||+ |.+|..++..|...+.  ++.++|.+..  ...+.++.     ..+..   .+++.++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            569999999 9999999988877664  5999999862  23333332     23322   3578889999999999876


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  164 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~  164 (390)
                      .+. +-...                  ....|+.+++.+++|.++-
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~~~  116 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPNIE  116 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCSBC
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCccCC
Confidence            652 11110                  1224588899999997653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.65  E-value=0.00021  Score=67.68  Aligned_cols=92  Identities=10%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      .|||+|||+ |.+|..++..|...+.  ++++||++....  ..+.+.    .++.   ++++.+++++||+||++...|
T Consensus         1 s~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~----g~~~---~~~~~~~~~~aDvvi~~vp~~   68 (287)
T 3pef_A            1 SQKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKA--EELAAL----GAER---AATPCEVVESCPVTFAMLADP   68 (287)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHT----TCEE---CSSHHHHHHHCSEEEECCSSH
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHC----CCee---cCCHHHHHhcCCEEEEEcCCH
Confidence            379999999 9999999999998886  899999986211  112211    2232   357889999999999986322


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCcEEEEecC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLC---EGIAKCC-PNATVNLISN  159 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia---~~I~~~~-p~a~iiv~tN  159 (390)
                                     ..++++.   +.+.... |+.+++..++
T Consensus        69 ---------------~~~~~v~~~~~~l~~~l~~~~~vi~~st   96 (287)
T 3pef_A           69 ---------------AAAEEVCFGKHGVLEGIGEGRGYVDMST   96 (287)
T ss_dssp             ---------------HHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence                           1234444   4454554 6666666654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.63  E-value=0.00024  Score=63.68  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC---CChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t---~dl~~al~dADiVIi~ag  118 (390)
                      |||.|+||+|++|+.++..|...+.  +|++++.+...  ..++..    ..++.+.+.   .+. +++.++|+||.++|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~----~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLG----ATVATLVKEPLVLTE-ADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTC----TTSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccC----CCceEEecccccccH-hhcccCCEEEECCc
Confidence            6899999999999999999998886  89999987522  112221    223333221   122 67999999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ....+..     ...|....+.+.+.+.+..  ..++++|
T Consensus        72 ~~~~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           72 VPWGSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CCTTSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             cCCCcch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            7633322     2457777788888877765  5566554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.61  E-value=0.00012  Score=68.38  Aligned_cols=95  Identities=14%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      +|||+|||+ |.+|..++..+...+. ..+.+||.+...  +..+....   .++.+   +++.++++++|+||++..  
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~~~~~~--~~~~~~~~---g~~~~---~~~~~~~~~~Dvvi~av~--   77 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF-RIVQVYSRTEES--ARELAQKV---EAEYT---TDLAEVNPYAKLYIVSLK--   77 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSHHH--HHHHHHHT---TCEEE---SCGGGSCSCCSEEEECCC--
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC-eEEEEEeCCHHH--HHHHHHHc---CCcee---CCHHHHhcCCCEEEEecC--
Confidence            579999999 9999999998887764 238999997621  11222211   12332   366788899999999862  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv  161 (390)
                                  .+  .+.++.+.+.... |+.+++..++-.
T Consensus        78 ------------~~--~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           78 ------------DS--AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             ------------HH--HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             ------------HH--HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                        11  1356666776665 678887777644

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.61  E-value=0.0002  Score=68.93  Aligned_cols=69  Identities=13%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..++|||+|||+ |.+|..++..|...+.  +|++||++....  .++...    .++.   ++++.+++++||+||++.
T Consensus        18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~l~~~----g~~~---~~~~~~~~~~aDvvi~~v   85 (310)
T 3doj_A           18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKC--DELVEH----GASV---CESPAEVIKKCKYTIAML   85 (310)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             cccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHC----CCeE---cCCHHHHHHhCCEEEEEc
Confidence            456789999999 9999999999999887  899999987221  112211    1232   357789999999999986


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      .
T Consensus        86 p   86 (310)
T 3doj_A           86 S   86 (310)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=97.60  E-value=0.00019  Score=68.58  Aligned_cols=113  Identities=20%  Similarity=0.149  Sum_probs=76.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCC--Cc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-P---QLENALTG--MD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~d--AD  111 (390)
                      ||||.|+||+|++|+.++..|...+.  +|+++|.+.   ......++...   .+++.+.+. +   ++.+++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC---CceEEEEcCCCCHHHHHHHHhccCCC
Confidence            57999999999999999999988775  899999743   22223344321   233333321 2   34566777  99


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||-++|.....  ..+....+..|+.-...+.+.+.+....+.+|++|
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999999864311  01334567889999999999998887665666665

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.58  E-value=0.00067  Score=60.42  Aligned_cols=99  Identities=12%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC---CChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t---~dl~~al~dADiVIi~ag  118 (390)
                      |||.|+||+|++|+.++..|...+.  +|++++.+....  .++.     ..++.+.+.   .+. +++.++|+||.++|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~-----~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   70 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKI--TQTH-----KDINILQKDIFDLTL-SDLSDQNVVVDAYG   70 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHH--HHHC-----SSSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhh--hhcc-----CCCeEEeccccChhh-hhhcCCCEEEECCc
Confidence            6999999999999999999998885  999999986221  1222     122332221   122 68999999999998


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+...       ...|....+.+.+.+.+.. ...++++|
T Consensus        71 ~~~~~-------~~~~~~~~~~l~~a~~~~~-~~~~v~~S  102 (221)
T 3ew7_A           71 ISPDE-------AEKHVTSLDHLISVLNGTV-SPRLLVVG  102 (221)
T ss_dssp             SSTTT-------TTSHHHHHHHHHHHHCSCC-SSEEEEEC
T ss_pred             CCccc-------cchHHHHHHHHHHHHHhcC-CceEEEEe
Confidence            86432       1346677777888777653 34455554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.57  E-value=0.00033  Score=67.38  Aligned_cols=115  Identities=15%  Similarity=0.053  Sum_probs=77.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC---CCeEEEEeCC----CChhhhhCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQ----PQLENALTGM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~---~~~v~~~~~t----~dl~~al~dA  110 (390)
                      +++||.|+||+|.+|+.++..|...+.  +++.+|...  ......++.....   ...++.+.+.    .++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            357999999999999999999988886  899999865  2223333332210   0244444331    2356788899


Q ss_pred             cEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          111 DLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       111 DiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      |+||-++|....+.  .+..+.+..|+.-...+.+.+.+....- ++.+
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~  149 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS-FTYA  149 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEE
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEE
Confidence            99999998543211  2344567889999999999998876544 4444

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.56  E-value=0.00025  Score=68.07  Aligned_cols=106  Identities=16%  Similarity=0.251  Sum_probs=73.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLV  113 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiV  113 (390)
                      ..+++||.|+||+|++|+.++..|...+.  +|+.+|.+...      .      .+..+.+    ..++.++++++|+|
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~------~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------T------GGEEVVGSLEDGQALSDAIMGVSAV   81 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------S------CCSEEESCTTCHHHHHHHHTTCSEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------C------CccEEecCcCCHHHHHHHHhCCCEE
Confidence            45568999999999999999999988885  88999987522      1      1111111    12356788999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |-+++..........+.+..|+.-...+.+.+.+....- +|++|
T Consensus        82 ih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~V~~S  125 (347)
T 4id9_A           82 LHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRR-FVFAS  125 (347)
T ss_dssp             EECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred             EECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence            999986544333446778889999999999988866444 44443

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.55  E-value=0.00021  Score=69.51  Aligned_cols=96  Identities=22%  Similarity=0.285  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc---------CCCeEEEEeCCCChhhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------TGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~---------~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      +|||+|||+ |.+|..++..|...+.  ++.++|.++.   ...+....         ....++.   ++|+ +++.++|
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~~---~~~~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~D   72 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGAT---LQALQTAGLRLTEDGATHTLPVRA---THDA-AALGEQD   72 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHHH---HHHHHHTCEEEEETTEEEEECCEE---ESCH-HHHCCCS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChHH---HHHHHHCCCEEecCCCeEEEeeeE---ECCH-HHcCCCC
Confidence            579999999 9999999999998886  8999998531   12222110         0012222   3465 4579999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd  162 (390)
                      +||++...                ..+.++.+.+..+- |+..|+.++|.+.
T Consensus        73 ~Vilavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           73 VVIVAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             EEEECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EEEEeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            99998621                12455666666553 7888999999963

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.55  E-value=0.00015  Score=67.25  Aligned_cols=97  Identities=12%  Similarity=0.181  Sum_probs=62.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ++||+|||+ |.+|..++..|...+.  ..++.+||+++..  +.++....   .++.   +++..+++++||+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-
Confidence            369999999 9999999999988774  3589999998621  12222110   1222   346778899999999987 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd  162 (390)
                      .|   .            .+.++.+.+..+. |+.+++..++-+.
T Consensus        72 ~~---~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 KP---D------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             CT---T------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             CH---H------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            22   1            1445566666655 5666665555554

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=97.53  E-value=0.00098  Score=63.71  Aligned_cols=118  Identities=13%  Similarity=0.051  Sum_probs=74.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccC-CCeEEEEeC----CCChhhhhCCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~-~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      .++++|.|+||+|+||+.++..|...+.  +|+..+.+.. .....++.+... ...++.+.+    ..++.++++++|+
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTG   80 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSE
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCE
Confidence            3567999999999999999999988876  7887776642 112222222110 013443332    2345678999999


Q ss_pred             EEEcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKPGMTR-DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g~~r-~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-.++.......+. .+.+..|+.-...+.+.+.+...-..+|++|
T Consensus        81 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S  127 (337)
T 2c29_D           81 VFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS  127 (337)
T ss_dssp             EEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence            999987542111222 2467789888888988888776334555554

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.53  E-value=0.00015  Score=70.34  Aligned_cols=96  Identities=20%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc---CCC----eEEEEeCCCChhhhhCCCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---TGA----VVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~---~~~----~v~~~~~t~dl~~al~dADiV  113 (390)
                      ++||+|||+ |.+|+.++..|...+.  ++.+||.+..+  +..+....   ..+    .++..   ++..+ ++++|+|
T Consensus        14 ~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~~---~~~~~-~~~aDvV   84 (335)
T 1z82_A           14 EMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRAT---NDLEE-IKKEDIL   84 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEEE---SCGGG-CCTTEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEEe---CCHHH-hcCCCEE
Confidence            579999999 9999999999988876  89999997521  12222111   000    23432   45656 8999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                      |++...+                .+.++...+..  ++..+|.++|.++.
T Consensus        85 il~vk~~----------------~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           85 VIAIPVQ----------------YIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EECSCGG----------------GHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             EEECCHH----------------HHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            9986311                13444444443  78888989987654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.53  E-value=0.00031  Score=67.51  Aligned_cols=98  Identities=24%  Similarity=0.309  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC--CchHHHHHHHhcccC----C---CeEEEEeCCCChhhhhCCCcE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----G---AVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di--~~~~g~a~DL~~~~~----~---~~v~~~~~t~dl~~al~dADi  112 (390)
                      |||+|||+ |.+|+.++..|...+.  ++.+||.  ++.  ....+.....    .   ..++... ..++.++++++|+
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEIFW-PEQLEKCLENAEV   74 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEEEC-GGGHHHHHTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEEec-HHhHHHHHhcCCE
Confidence            69999999 9999999999988776  8999999  642  1222322110    0   1234321 1166678999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      ||++...+                .+.++.+.+....|+.+++.++|-+
T Consensus        75 vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           75 VLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             EEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             EEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            99987322                1234444554434678888888876

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.52  E-value=0.00054  Score=61.64  Aligned_cols=99  Identities=22%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             CCCE-EEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEE
Q 016424           40 AGFK-VAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV  113 (390)
Q Consensus        40 ~~~K-I~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiV  113 (390)
                      .||| |.|+||+|++|+.++..|+ ..+.  +|++++.+... ...++...  ...+..+.+.    .++.++++++|+|
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~v   77 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVV   77 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEE
Confidence            3455 9999999999999999998 7776  89999987420 11222111  1334443321    2445788999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |..+|.+             |.. .+.+.+.+.+.... .+|++|
T Consensus        78 v~~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           78 FVGAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             EESCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             EEcCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            9999754             333 67777777766543 444443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.52  E-value=0.00028  Score=66.83  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |+||+|||+ |.+|..++..|...+.  ++++||++....  ..+.+.    .++.   ++++.+++++||+||++..
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~----g~~~---~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKC--APLVAL----GARQ---ASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGG--HHHHHH----TCEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHC----CCee---cCCHHHHHHcCCEEEEEcC
Confidence            479999999 9999999999988776  899999987211  111111    1222   3577889999999999863

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.52  E-value=0.00027  Score=67.98  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=73.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc----c-CCC-----eEEEEeCCCChhhhhCCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----D-TGA-----VVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~----~-~~~-----~v~~~~~t~dl~~al~dAD  111 (390)
                      |||+|||+ |.+|..++..|...+.  ++.+||.++.    ..+...    . ...     .++.   +++. +++.++|
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~----~~i~~~g~~~~~~~g~~~~~~~~~---~~~~-~~~~~~D   71 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY----EAIAGNGLKVFSINGDFTLPHVKG---YRAP-EEIGPMD   71 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH----HHHHHTCEEEEETTCCEEESCCCE---ESCH-HHHCCCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH----HHHHhCCCEEEcCCCeEEEeecee---ecCH-HHcCCCC
Confidence            69999999 9999999999998876  8999999762    112211    0 011     1222   2454 5589999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccc
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML  189 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~L  189 (390)
                      +||++..    +..            +.++.+.+..+ .|+..|+.+.|-++....+     .+.  +|..+|++- +..
T Consensus        72 ~vilavk----~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l-----~~~--~~~~~v~~~~~~~  128 (312)
T 3hn2_A           72 LVLVGLK----TFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEAL-----ATL--FGAERIIGGVAFL  128 (312)
T ss_dssp             EEEECCC----GGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHHH-----HHH--TCGGGEEEEEEEE
T ss_pred             EEEEecC----CCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHHH-----HHH--CCCCcEEEEEEEe
Confidence            9999862    221            23455556555 4788888899998765332     332  566777754 443

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=97.51  E-value=0.00025  Score=67.72  Aligned_cols=118  Identities=15%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~dADiVIi~  116 (390)
                      .|||.|+||+|++|+.++..|...+...+++..|.....+....+.+......++.+.+. +   ++.+++.++|+||-+
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            479999999999999999988876533388999875311101112221112345544332 2   244566799999999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|.....  ..+..+.+..|+.-...+.+.+.+......+|++|
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVS  126 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            9864311  11234567889999999999998885445666665

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.50  E-value=0.00022  Score=68.06  Aligned_cols=116  Identities=16%  Similarity=0.029  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH---HHHHHHhcccCCCeEEEEeCC-C---ChhhhhCC-
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLGQ-P---QLENALTG-  109 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~---g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~d-  109 (390)
                      .+.++||.|+||+|++|+.++..|...+.  +|+.+|.+...   ....++.   ....++.+.+. +   ++.+++++ 
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~   85 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELG---IEGDIQYEDGDMADACSVQRAVIKA   85 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTT---CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhcc---ccCceEEEECCCCCHHHHHHHHHHc
Confidence            45678999999999999999999988875  89999987521   1222221   11234443321 2   23455665 


Q ss_pred             -CcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          110 -MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 -ADiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                       .|+||-++|.....  .......+..|+.-...+.+.+.+......+|.+|
T Consensus        86 ~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  137 (335)
T 1rpn_A           86 QPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  137 (335)
T ss_dssp             CCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence             59999999865321  12445667888888889999988876434565554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.49  E-value=0.00045  Score=65.36  Aligned_cols=93  Identities=19%  Similarity=0.288  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      +|||+|||++|.+|..++..|...+.  ++++||.+...  ...+...  .  ++.   + +..+++++||+||++... 
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~--g--~~~---~-~~~~~~~~aDvVi~av~~-   77 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGM--G--IPL---T-DGDGWIDEADVVVLALPD-   77 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHT--T--CCC---C-CSSGGGGTCSEEEECSCH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhc--C--CCc---C-CHHHHhcCCCEEEEcCCc-
Confidence            46999999889999999999988886  89999997621  1122221  1  111   1 345788999999998621 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv  161 (390)
                                     ..+.++.+.+..+. |+.+++..++..
T Consensus        78 ---------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           78 ---------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             ---------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             ---------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                           11456667776664 677777666644

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.48  E-value=0.00016  Score=70.91  Aligned_cols=99  Identities=14%  Similarity=0.264  Sum_probs=63.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhccc------CCCeEEEEeCCCChhhhhCCCcEEE
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~------~~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      ||+|||+ |.+|..++..|...+.  ++.+||.++.  ...........      ....++.   ++++.+++++||+||
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~aDvVi   90 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGAEIIL   90 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTCSSEE
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceee---eCCHHHHHcCCCEEE
Confidence            9999999 9999999999988775  8999999862  22211111100      1123554   246778899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HHHhC-C-CcEEEEecCCCcc
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEG----IAKCC-P-NATVNLISNPVNS  163 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~----I~~~~-p-~a~iiv~tNPvd~  163 (390)
                      ++...                ..+.++...    +..+. | +.+++.++|-++.
T Consensus        91 lav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           91 FVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             ECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             ECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            98621                123344444    44332 5 6778888876543

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=97.48  E-value=0.00072  Score=64.59  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hH--HHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP--GVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~--g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      ++||.|+||+|+||+.++..|...+.  +++..+.+.  ..  ....++..   ...++.+.+    ..++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQE---LGDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGG---GSCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCC---CCcEEEEecCCCChHHHHHHHcCCCE
Confidence            46999999999999999999988886  777766654  11  11123321   123443322    2345678999999


Q ss_pred             EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-.++.......+ ..+.+..|+.-...+.+.+.+...-..+|++|
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~S  130 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS  130 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEe
Confidence            99988753211111 12366788888888888887764223555554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.47  E-value=0.00048  Score=65.81  Aligned_cols=91  Identities=20%  Similarity=0.284  Sum_probs=61.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ++||+|||+ |.+|..++..|...+.  ++++||++....  ..+.+.    .++.   ++++.++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~~~~~----g~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAM--TPLAEA----GATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTS--HHHHHT----TCEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHC----CCEE---cCCHHHHHh-CCEEEEECCCh
Confidence            469999999 9999999999998886  899999987211  111111    1232   357888888 99999986322


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                                     ..++++.+.+.... |+.+++..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           12344456666554 6666666653

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.46  E-value=0.0005  Score=66.28  Aligned_cols=94  Identities=10%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ++|||+|||+ |.+|..++..|...+. .+|++||++........+...    .++.   ++++.+++++||+||++...
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~----g~~~---~~~~~e~~~~aDvVi~~vp~   93 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEEL----GVSC---KASVAEVAGECDVIFSLVTA   93 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHT----TCEE---CSCHHHHHHHCSEEEECSCT
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHC----CCEE---eCCHHHHHhcCCEEEEecCc
Confidence            4689999999 9999999999887763 589999997201111222221    1232   34677889999999998743


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      +.                ..+++..+.... |+.+++..|
T Consensus        94 ~~----------------~~~~~~~l~~~l~~~~ivvd~s  117 (312)
T 3qsg_A           94 QA----------------ALEVAQQAGPHLCEGALYADFT  117 (312)
T ss_dssp             TT----------------HHHHHHHHGGGCCTTCEEEECC
T ss_pred             hh----------------HHHHHHhhHhhcCCCCEEEEcC
Confidence            32                112335555555 666666554

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.46  E-value=0.00023  Score=66.70  Aligned_cols=99  Identities=18%  Similarity=0.234  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC-CC--eEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GA--VVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~-~~--~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||+ |.+|+.++..|...+.  ++.+||.++...  .++..... ..  ......  ++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~--~~l~~~~~~~~~~~~~~~~--~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPY--CSVNLVETDGSIFNESLTA--ND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSE--EEEEEECTTSCEEEEEEEE--SC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCccce--eeEEEEcCCCceeeeeeee--cC-ccccCCCCEEEEEec
Confidence            69999999 9999999999998886  899999986211  11221110 11  122222  24 477899999999973


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCccc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  164 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~  164 (390)
                      .+.                +.++.+.+..+. |+.+++..+|.++..
T Consensus        73 ~~~----------------~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AWQ----------------VSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GGG----------------HHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HHh----------------HHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            221                244555666554 678888889987654

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=97.46  E-value=0.00025  Score=68.10  Aligned_cols=119  Identities=15%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCC--CcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTG--MDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~d--ADi  112 (390)
                      .++|||.|+||+|.+|+.++..|...+.-.+++..|..........+........++.+.+.    .++.+++++  +|+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~  101 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV  101 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence            35679999999999999999988887744478888876422222223332222455555432    234456766  999


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-+++.....  .....+.+..|+.-...+.+.+.+....- +|.+|
T Consensus       102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~S  148 (346)
T 4egb_A          102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-LVQVS  148 (346)
T ss_dssp             EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSE-EEEEE
T ss_pred             EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEeC
Confidence            99999865322  12334567889888899999988875443 44443

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.45  E-value=0.00034  Score=66.68  Aligned_cols=116  Identities=16%  Similarity=-0.010  Sum_probs=74.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCC--CcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTG--MDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~d--ADiVI  114 (390)
                      .++|.|+||+|++|+.++..|...+.  +|+++|.+........+.+......++.+.+. +   ++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46999999999999999999988875  89999987621111122221111234443221 1   23455665  49999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .++|.....  .......+..|+.-...+.+.+.+......++++|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999865311  12345667788888888888888765435566554

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.44  E-value=0.00066  Score=64.76  Aligned_cols=110  Identities=20%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi  115 (390)
                      .+|||.|+||+|++|+.++..|...+.  +|+++|.+....  .++.+    ..++.+.+.    .++.++++++|+||.
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~----~~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAY----LEPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGG----GCCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhcc----CCeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            457999999999999999999988875  899999875211  11221    122322221    235577899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++|..........+.+..|+.....+.+.+.+.... .+|.+|
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  125 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVG  125 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEEC
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEC
Confidence            998643222334456788999999999988887543 344444

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.43  E-value=0.00035  Score=67.17  Aligned_cols=122  Identities=9%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +|||+|||+ |.+|..++..|. .+.  ++.+++.++.  .....+=..............+.+ .++..++|+||++.-
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vilavK   76 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVTVK   76 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHHHHHhCCceEecCCCeeccccccc-ccccCCCCEEEEEeC
Confidence            379999999 999999999988 765  9999999752  222111000000011011000111 245789999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  191 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds  191 (390)
                          +..            +.++.+.+....++. |+.+.|-++..     +.+.+  -+|..+|++- +....
T Consensus        77 ----~~~------------~~~~l~~l~~~~~~~-ivs~~nGi~~~-----e~l~~--~~~~~~vl~g~~~~~a  126 (307)
T 3ego_A           77 ----QHQ------------LQSVFSSLERIGKTN-ILFLQNGMGHI-----HDLKD--WHVGHSIYVGIVEHGA  126 (307)
T ss_dssp             ----GGG------------HHHHHHHTTSSCCCE-EEECCSSSHHH-----HHHHT--CCCSCEEEEEEECCEE
T ss_pred             ----HHH------------HHHHHHHhhcCCCCe-EEEecCCccHH-----HHHHH--hCCCCcEEEEEEeece
Confidence                211            334555665555677 88889998754     23333  3677888744 65443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.42  E-value=0.00073  Score=64.85  Aligned_cols=67  Identities=15%  Similarity=0.228  Sum_probs=50.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..++||+|||+ |.+|..++..|...+.  +|.+||++...  +..+....    ++.   .+++.+++++||+||++.
T Consensus         7 ~~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            7 SFEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVL   73 (306)
T ss_dssp             CCSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECC
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEe
Confidence            34679999999 9999999999998886  89999998621  12222211    222   357789999999999986

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.41  E-value=0.0005  Score=61.77  Aligned_cols=100  Identities=19%  Similarity=0.241  Sum_probs=66.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C----ChhhhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P----QLENALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~----dl~~al~dADiVIi~  116 (390)
                      |||.|+||+|++|+.++..|...+.  +++++|.+...     +...   ..++.+.+. +    ++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~-----~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQ-----VPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGG-----SCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccc-----hhhc---CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            6999999999999999999988875  89999987621     1111   233333321 2    356788999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|.....      .+..|+.-...+++.+.+.... .+|++|
T Consensus        71 ag~~~~~------~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  105 (219)
T 3dqp_A           71 SGSGGKS------LLKVDLYGAVKLMQAAEKAEVK-RFILLS  105 (219)
T ss_dssp             CCCTTSS------CCCCCCHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             CcCCCCC------cEeEeHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            9876522      2234555566666666665433 455554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.40  E-value=0.00027  Score=67.59  Aligned_cols=68  Identities=19%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +++||+|||+ |.+|..++..|...+.  ++++||++..  .+..+....  ... .   ++++.+++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~~~~~g--~~~-~---~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQ--ACANLLAEG--ACG-A---AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT--CSE-E---ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHH--HHHHHHHcC--Ccc-c---cCCHHHHHhcCCEEEEECC
Confidence            4579999999 9999999999999887  8999999862  122232221  111 1   1356788999999999863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.0005  Score=66.55  Aligned_cols=67  Identities=16%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCc-----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~-----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      +|||+|||+ |.+|.+++..|...+ .  ++.+||++.     .......+....  .   .   ++++.+++++||+||
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g--~---~---~~s~~e~~~~aDvVi   92 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG--V---E---PLDDVAGIACADVVL   92 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT--C---E---EESSGGGGGGCSEEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC--C---C---CCCHHHHHhcCCEEE
Confidence            469999999 999999999999888 5  999999985     112223333221  1   1   114568899999999


Q ss_pred             EcCC
Q 016424          115 IPAG  118 (390)
Q Consensus       115 i~ag  118 (390)
                      ++..
T Consensus        93 ~avp   96 (317)
T 4ezb_A           93 SLVV   96 (317)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.36  E-value=0.0011  Score=62.07  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+|||+ |.+|..++..|...+.  +++++|.+....  ..+....  ...+.   ++++.++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g--~~~~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQ--LVDEA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT--SCSEE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCC--CCccc---cCCHHHh-CCCCEEEEECCH--
Confidence            68999999 9999999999988876  899999986211  1122211  11122   2356677 999999998621  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                                    ..+.++.+.+..+. |+.+|+.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          13455666666654 6777766644

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.36  E-value=0.001  Score=62.89  Aligned_cols=106  Identities=17%  Similarity=0.128  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +|||.|+||+|.+|+.++..|...+.  +|+.+|.+.....   +..... ..++.    ..++.++++++|+||.+++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~~~~~Dl~----~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYEYRVSDYT----LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCEEEECCCC----HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceEEEEcccc----HHHHHHhhcCCCEEEEcccc
Confidence            36999999999999999999998886  8999998741111   221110 01221    12456789999999999886


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ....  ...+....|+...+.+.+.+.+....- +|.+|
T Consensus        73 ~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~S  108 (311)
T 3m2p_A           73 RGSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYAS  108 (311)
T ss_dssp             CCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             CCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            5432  334456788888899999998876543 44443

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.36  E-value=0.0014  Score=67.31  Aligned_cols=110  Identities=6%  Similarity=0.075  Sum_probs=72.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC---CcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d---ADiVIi~ag  118 (390)
                      +||+|||+ |.+|++++..|+..+.  +|.+||++...  +.++........++.   ++++.+++++   +|+||++..
T Consensus        16 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~Vp   87 (480)
T 2zyd_A           16 QQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKKLVP---YYTVKEFVESLETPRRILLMVK   87 (480)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEECSC
T ss_pred             CeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEEECC
Confidence            58999999 9999999999998886  89999997621  122222100123443   4577787777   999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~  174 (390)
                      .+    .           .+.++.+.+..+. |+.+||..+|-....+.-.++.+..
T Consensus        88 ~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~  129 (480)
T 2zyd_A           88 AG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSA  129 (480)
T ss_dssp             SS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            22    1           2344555666655 6788888888765443333444443

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.36  E-value=0.00079  Score=64.28  Aligned_cols=115  Identities=14%  Similarity=0.076  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC----CChhhhhC--CCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ----PQLENALT--GMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~--dAD  111 (390)
                      .+|+|.|+||+|++|+.++..|...+.  ++++.|.+.  ......++.... ...+..+.+.    .++.++++  +.|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCc
Confidence            457999999999999999999998886  899999875  222333333221 1233333221    23445566  899


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||..+|.....  .....+.+..|+.....+.+.+.+..... +|++|
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-iv~~S  128 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR-IVFSS  128 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCE-EEEEe
Confidence            999999864311  12234567789999999999888876444 44443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.35  E-value=0.0015  Score=66.15  Aligned_cols=112  Identities=14%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc----------------CCCeEEEEeCCCChh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLE  104 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~----------------~~~~v~~~~~t~dl~  104 (390)
                      ..|.+|||. |.+|.+++..|+..+.  +++.||+++.  .+..|....                ...+++.   |+|  
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~--kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd--   80 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQ--TIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT--   80 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS--
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc--
Confidence            469999999 9999999999999987  9999999862  222232210                0234664   234  


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHH
Q 016424          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIA  168 (390)
Q Consensus       105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~  168 (390)
                        +++||+||++.+.|......+    ..++..++..++.|.++- |+.+|+.- |-|.+..-.+.
T Consensus        81 --~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~  140 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFV  140 (431)
T ss_dssp             --CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTH
T ss_pred             --hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHH
Confidence              468999999998887532100    123444566667777765 55555444 56776654443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.34  E-value=0.00042  Score=71.23  Aligned_cols=105  Identities=17%  Similarity=0.105  Sum_probs=70.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ++|||.|+||+|.+|+.++..|...+.  +|+.++.+....     .      .+..- .+..+.++++++|+||.+++.
T Consensus       146 k~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~-----~------~v~~d-~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          146 SPLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKP-----G------KRFWD-PLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCT-----T------CEECC-TTSCCTTTTTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCc-----c------ceeec-ccchhHHhcCCCCEEEECCCC
Confidence            389999999999999999999988886  899999876211     0      01110 012235778999999999986


Q ss_pred             CCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~---g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ....   .....++...|+.-...+++.+.+...-..+|.+|
T Consensus       212 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          212 PIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             -----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            5321   12345567789999999999855444333455554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.34  E-value=0.00058  Score=64.63  Aligned_cols=93  Identities=18%  Similarity=0.211  Sum_probs=62.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+|||+ |.+|..++..|...+.  ++.+||.+...  ...+...    .++.   ++++.++++++|+||++...+.
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~----g~~~---~~~~~~~~~~~D~vi~~v~~~~   73 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAA----GAET---ASTAKAIAEQCDVIITMLPNSP   73 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHT----TCEE---CSSHHHHHHHCSEEEECCSSHH
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHC----CCee---cCCHHHHHhCCCEEEEECCCHH
Confidence            69999998 9999999999988876  89999997621  1122221    1232   3567788999999999874321


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEecCCC
Q 016424          122 KPGMTRDDLFNINAGIVRTLC---EGIAKC-CPNATVNLISNPV  161 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia---~~I~~~-~p~a~iiv~tNPv  161 (390)
                                     .+.++.   +.+... .|+.+++..+|-.
T Consensus        74 ---------------~~~~~~~~~~~l~~~l~~~~~vv~~s~~~  102 (299)
T 1vpd_A           74 ---------------HVKEVALGENGIIEGAKPGTVLIDMSSIA  102 (299)
T ss_dssp             ---------------HHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred             ---------------HHHHHHhCcchHhhcCCCCCEEEECCCCC
Confidence                           122333   334343 4677777777654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.33  E-value=0.00039  Score=67.53  Aligned_cols=111  Identities=16%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C----ChhhhhCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P----QLENALTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~----dl~~al~dADiV  113 (390)
                      .+|||.|+||+|.+|+.++..|... +.  +|+.+|.+...  ..++..   ...++.+.+. +    ++.++++++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~--~~~~~~---~~~v~~~~~Dl~~d~~~~~~~~~~~d~V   95 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDR--LGDLVK---HERMHFFEGDITINKEWVEYHVKKCDVI   95 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTT--TGGGGG---STTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhh--hhhhcc---CCCeEEEeCccCCCHHHHHHHhccCCEE
Confidence            4679999999999999999988876 65  89999987511  011111   1344444332 1    244577899999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          114 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       114 Ii~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |-+++......  .+..+.+..|+.....+.+.+.+.+  ..+|.+|-
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            99988653211  2334566778877888888888887  45666653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.33  E-value=0.00087  Score=64.84  Aligned_cols=95  Identities=15%  Similarity=0.163  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHh-ccc---CC--CeE-EEEeCCCChhhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS-HMD---TG--AVV-RGFLGQPQLENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~-~~~---~~--~~v-~~~~~t~dl~~al~dAD  111 (390)
                      +|||+|||+ |.+|..++..|...+.  ++.++|.++.  ........ ...   ..  .++ ..   ++|+.++++++|
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D   77 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL---TSDIGLAVKDAD   77 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEE---ESCHHHHHTTCS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEecccccccccccee---cCCHHHHHhcCC
Confidence            479999999 9999999999988876  8999999762  22211110 000   00  011 12   247778899999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  157 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~  157 (390)
                      +||++...+.                ..++++.+..+. ++..++..
T Consensus        78 ~vi~~v~~~~----------------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           78 VILIVVPAIH----------------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EEEECSCGGG----------------HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEEeCCchH----------------HHHHHHHHHHhCCCCCEEEEc
Confidence            9999973321                135556666655 56655555

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.33  E-value=0.0005  Score=65.13  Aligned_cols=66  Identities=14%  Similarity=0.336  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +++||+|||+ |.+|..++..|...+.  ++.+||.+...  ...+.+.    .++.   .+++.++++++|+||++.
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~----g~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQ----GAQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHC----CCee---cCCHHHHHhCCCEEEEEC
Confidence            4689999999 9999999999988776  89999997521  2223322    1232   346778899999999986

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.32  E-value=0.00039  Score=68.71  Aligned_cols=96  Identities=13%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCC---cEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM---DLVI  114 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dA---DiVI  114 (390)
                      .-++|||+|||. |.+|..++..|...+.  +|.+||++..  .+.++....    +..   .+++.++++++   |+||
T Consensus        19 Mm~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~~---~~s~~e~~~~a~~~DvVi   86 (358)
T 4e21_A           19 YFQSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IAG---ARSIEEFCAKLVKPRVVW   86 (358)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CBC---CSSHHHHHHHSCSSCEEE
T ss_pred             hhcCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CEE---eCCHHHHHhcCCCCCEEE
Confidence            334589999999 9999999999999886  8999999862  222333221    221   35778888888   9999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv  161 (390)
                      ++...+                .+.++...+.... |+.+||..||-.
T Consensus        87 ~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           87 LMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             ECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             EeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            986321                2344556666655 677777776543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.31  E-value=0.00021  Score=67.57  Aligned_cols=65  Identities=15%  Similarity=0.286  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ++|||+|||+ |.+|+.++..|...+.  ++.+|| +....  ..+....    ++.   .+++.++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~--~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVA--DELLSLG----AVN---VETARQVTEFADIIFIMV   66 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCC--HHHHTTT----CBC---CSSHHHHHHTCSEEEECC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHH--HHHHHcC----Ccc---cCCHHHHHhcCCEEEEEC
Confidence            4689999999 9999999999988776  899999 76211  1122111    121   346778899999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.31  E-value=0.00037  Score=57.69  Aligned_cols=71  Identities=23%  Similarity=0.272  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCCh---h-hhhCCCcEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---E-NALTGMDLVI  114 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl---~-~al~dADiVI  114 (390)
                      +.|||+|+|+ |.+|+.++..|...+.  +++++|.++..  ...+.... ...  .+.+ .++.   . ..++++|+||
T Consensus         3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~--~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            3 HGMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DAL--VINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSE--EEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcE--EEEcCCCCHHHHHHcCcccCCEEE
Confidence            4589999999 9999999999988775  89999997621  12222110 111  1112 1222   1 2378999999


Q ss_pred             EcCC
Q 016424          115 IPAG  118 (390)
Q Consensus       115 i~ag  118 (390)
                      ++.+
T Consensus        75 ~~~~   78 (140)
T 1lss_A           75 AVTG   78 (140)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            9964

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.31  E-value=0.001  Score=62.43  Aligned_cols=92  Identities=12%  Similarity=0.019  Sum_probs=59.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ||||+|||+ |.+|..++..|.. +.  ++.+||.+....  ..+....    +...   + +.++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~--~~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKA--LRHQEEF----GSEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHH--HHHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh
Confidence            469999999 9999999999888 75  799999986211  1121111    1111   1 457789999999986322


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv  161 (390)
                      .               .+.++.+.+.... |+.+++..+|..
T Consensus        67 ~---------------~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 R---------------EVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             H---------------HHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             H---------------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            1               1233445555444 677777777754

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=97.30  E-value=0.00068  Score=65.47  Aligned_cols=111  Identities=10%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC-----CCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-----GMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-----dADiVI  114 (390)
                      +|+|.|+||+|++|+.++..|...+ .  +++++|.+.......++.......++..   ...+.++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMDK---EDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEEEEH---HHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeeecCc---HHHHHHHHhhcccCCCCEEE
Confidence            4789999999999999999888877 4  7888988652111111221111112221   123445565     599999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -++|..........+.+..|+.-...+.+.+.+...  .+|++|
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            999865443345567788899999999999888765  455554

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.29  E-value=0.0014  Score=63.47  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=75.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHh--CCCCcEEEEEeCCch--HHHHH---HHhccc--CCCeEEEEeCC-C---Chhh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNT--PGVTA---DISHMD--TGAVVRGFLGQ-P---QLEN  105 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~--~~~~~eL~L~Di~~~--~g~a~---DL~~~~--~~~~v~~~~~t-~---dl~~  105 (390)
                      -++++|.|+||+|++|+.++..|..  .+.  +|+++|.+..  .....   .+.+..  ....+..+.+. +   ++.+
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   85 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR   85 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence            3467999999999999999999988  665  8999998542  00000   011100  11233333321 2   2334


Q ss_pred             h-hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          106 A-LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       106 a-l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      + ..++|+||-+||..........+.+..|+.-...+.+.+.+....  +|++|
T Consensus        86 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~S  137 (362)
T 3sxp_A           86 LEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYAS  137 (362)
T ss_dssp             HTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEE
T ss_pred             hhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeC
Confidence            4 689999999998654334556678889999999999999877644  44444

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.26  E-value=0.00043  Score=66.34  Aligned_cols=94  Identities=14%  Similarity=0.137  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..+||+|||+ |.+|..++..|...+.  ++.+||.+....  ..+...  .  ++.   .+++.++++++|+||++...
T Consensus        29 ~~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~--g--~~~---~~~~~~~~~~~DvVi~av~~   96 (316)
T 2uyy_A           29 TDKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKC--DLFIQE--G--ARL---GRTPAEVVSTCDITFACVSD   96 (316)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGG--HHHHHT--T--CEE---CSCHHHHHHHCSEEEECCSS
T ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHc--C--CEE---cCCHHHHHhcCCEEEEeCCC
Confidence            3579999999 9999999999988776  799999986211  112211  1  222   24677889999999998632


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNP  160 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tNP  160 (390)
                      |.               .++++...+    ....|+..++..+|-
T Consensus        97 ~~---------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~  126 (316)
T 2uyy_A           97 PK---------------AAKDLVLGPSGVLQGIRPGKCYVDMSTV  126 (316)
T ss_dssp             HH---------------HHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred             HH---------------HHHHHHcCchhHhhcCCCCCEEEECCCC
Confidence            21               123333332    224577888878874

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=97.25  E-value=0.0016  Score=62.56  Aligned_cols=114  Identities=14%  Similarity=0.049  Sum_probs=74.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .+++||.|+||+|.+|+.++..|...+.  +|+++|.+... ....+.+......+....+. -...++.++|+||-++|
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~d~vih~A~  100 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTG-RKRNVEHWIGHENFELINHD-VVEPLYIEVDQIYHLAS  100 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSC-CGGGTGGGTTCTTEEEEECC-TTSCCCCCCSEEEECCS
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCcc-chhhhhhhccCCceEEEeCc-cCChhhcCCCEEEECcc
Confidence            3467999999999999999999988875  89999986410 00112221112345554432 12346789999999988


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .....  .......+..|+.....+++.+.+...  .++++|
T Consensus       101 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A          101 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            64321  123445677899888999998888763  555554

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.24  E-value=0.0007  Score=64.88  Aligned_cols=115  Identities=17%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~dADiVIi~  116 (390)
                      |++|.|+||+|++|+.++..|...+...+|+++|.+...+....+.... ...++.+.+. +   ++.++++++|+||-+
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIVHY   82 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhc-cCCeEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence            6799999999999999999888763223899999864111001111111 1344444332 2   345678999999999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|.....  ..+..+.+..|+.-...+.+.+.+...  .+|++|
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            9865311  012245677888888889888888753  566554

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.23  E-value=0.0014  Score=65.06  Aligned_cols=94  Identities=15%  Similarity=0.136  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEe---CCchHHHHHH-Hhccc------CC-C-------eEEEEeCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYD---VVNTPGVTAD-ISHMD------TG-A-------VVRGFLGQP  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~D---i~~~~g~a~D-L~~~~------~~-~-------~v~~~~~t~  101 (390)
                      +|||+|||+ |.+|..++..|+.. +.  ++.+||   .+.  ..... +....      .. .       .+...  ++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~   74 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEA--ERWTKALGADELTVIVNEKDGTQTEVKSRPKVI--TK   74 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHH--HHHHHHHTTSCEEEEEECSSSCEEEEEECCSEE--ES
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcH--HHHHHHHhhccceeeeecCCCccceeeccceEE--eC
Confidence            479999999 99999999999773 65  899999   432  12222 22110      00 1       11112  35


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  157 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~  157 (390)
                      |+.+++++||+||++...+.                ..++++.+..+. |+.+|+..
T Consensus        75 ~~~~a~~~aD~Vilav~~~~----------------~~~v~~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           75 DPEIAISGADVVILTVPAFA----------------HEGYFQAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CHHHHHTTCSEEEECSCGGG----------------HHHHHHHHTTTCCTTCEEEET
T ss_pred             CHHHHhCCCCEEEEeCchHH----------------HHHHHHHHHhhCCCCcEEEEc
Confidence            77788999999999873321                345666676665 56655543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.23  E-value=0.0018  Score=62.88  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=77.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~dAD  111 (390)
                      -++++|.|+||+|++|+.++..|... + ..+|+++|.++.  .....++..    ..++.+.+. +   ++.+++++.|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g-~~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTN-AKKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCC-CSEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCC-CCEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCC
Confidence            44579999999999999999988876 5 248999999862  222233321    344444332 2   3456788999


Q ss_pred             EEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||-.+|....+.  ....+.+..|+.-...+++.+.+.... .++++|
T Consensus        94 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           94 ICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            9999998764321  233467788998889999988877543 445554

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.22  E-value=0.0016  Score=62.71  Aligned_cols=116  Identities=16%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccC---CCeEEEEeCC-C---ChhhhhCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---GAVVRGFLGQ-P---QLENALTGM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~---~~~v~~~~~t-~---dl~~al~dA  110 (390)
                      +++||.|+||+|++|+.++..|...+.  +|+++|.+..  .....++.....   ...++.+.+. +   ++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            467999999999999999999988875  8999998651  111222211100   1234443322 2   345678899


Q ss_pred             cEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          111 DLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       111 DiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |+||.++|....+.  ......+..|+.-...+++.+.+.... .+|++|
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  152 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAA  152 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            99999998643111  233456778888888888888876433 455444

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=97.21  E-value=0.0014  Score=61.56  Aligned_cols=109  Identities=10%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC-----CcEEEEc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG-----MDLVIIP  116 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d-----ADiVIi~  116 (390)
                      ||.|+||+|.+|+.++..|...+ .  +++++|.........++.......++.-   ...+.+++++     +|+||.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMDK---EDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEEH---HHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceecccccc---HHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999998877 4  7888888652111122222211122221   2234566664     9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|..........+.+..|+.....+.+.+.+...  .++.+|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865443345566788899999999999988765  455554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.21  E-value=0.0031  Score=55.29  Aligned_cols=103  Identities=16%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~a  117 (390)
                      |||.|+||+|++|+.++..|...+.  ++++++.+...     +.... ...++.+.+.    .++.++++++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~-----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhh-----ccccc-CCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999988875  89999987521     11110 1233333321    23557789999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |........     ..|......+.+.+.+.... .++++|
T Consensus        76 ~~~~~~~~~-----~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLSPT-----TVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCSCC-----CHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCCcc-----chHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            864321111     25666677777777776543 455444

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.19  E-value=0.00093  Score=62.24  Aligned_cols=104  Identities=15%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi~  116 (390)
                      +++|.|+||+|++|+.++..|+..+.  +|++.|.++....         ...+..+.+    ..++.+++++.|+||..
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            35799999999999999999988775  8999998762111         123333322    12355678899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|...  .......+..|+.-...+.+.+.+.... .||++|
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~S  110 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFAS  110 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            98742  2344567788999999999998776543 455554

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.19  E-value=0.0016  Score=62.07  Aligned_cols=109  Identities=15%  Similarity=0.094  Sum_probs=71.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C----ChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P----QLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~----dl~~al~dADiVIi  115 (390)
                      |||.|+||+|.+|+.++..|... +.  +|+++|.+....  .++..   ...++.+.+. +    .+.++++++|+||-
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999988886 55  899999875211  11111   1244444321 1    24457789999999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          116 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       116 ~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ++|.....  ..+..+.+..|+.....+.+.+.+..  ..+|.+|-
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            98864311  12334566778877788888887765  55666653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.19  E-value=0.004  Score=58.14  Aligned_cols=116  Identities=18%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++........+..+.+. +|.   .+++       
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999998886  899999876  23333444432222345444321 232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCP-NATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~i----i~~ia~~I~~~~p-~a~iiv~t  158 (390)
                      .+.|+||..+|......   .+.   ...+..|+.-    .+.+.+.+.+... .+.|++++
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~is  171 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININ  171 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEc
Confidence            27999999998653221   222   2345566555    6667777766653 46777765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.17  E-value=0.00048  Score=63.96  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=59.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||+|||+ |.+|+.++..|...+. .++.+||.+...  +..+....   .++..   +++.+++ ++|+||++.. | 
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~-~~D~vi~~v~-~-   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKEL---GVETS---ATLPELH-SDDVLILAVK-P-   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHHT---CCEEE---SSCCCCC-TTSEEEECSC-H-
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCC-CeEEEECCCHHH--HHHHHHhc---CCEEe---CCHHHHh-cCCEEEEEeC-c-
Confidence            68999999 9999999998887762 489999997521  12222211   12332   2445778 9999999873 2 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                                    ..+.++.+.+.. . +.+++.++|-+..
T Consensus        68 --------------~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 --------------QDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             --------------HHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             --------------hhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                          123444444443 3 6677776677664

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.17  E-value=0.0013  Score=62.77  Aligned_cols=75  Identities=19%  Similarity=0.285  Sum_probs=56.0

Q ss_pred             CEEEEEc-CCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIG-a~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      +||+||| + |.+|..++..|...+.  ++.++|.+..                      ++..+++++||+||++...+
T Consensus        22 ~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~----------------------~~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECSCGG
T ss_pred             CEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCcc----------------------cCHHHHhcCCCEEEEeCCHH
Confidence            5899999 7 9999999999998886  8999998752                      13467899999999987322


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  157 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~  157 (390)
                                      .+.++.+.+..+. |+++|+.+
T Consensus        77 ----------------~~~~vl~~l~~~l~~~~iv~~~   98 (298)
T 2pv7_A           77 ----------------LTLETIERLKPYLTENMLLADL   98 (298)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEEC
T ss_pred             ----------------HHHHHHHHHHhhcCCCcEEEEC
Confidence                            1445556666554 67766554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.16  E-value=0.0033  Score=61.44  Aligned_cols=112  Identities=16%  Similarity=0.018  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV  113 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiV  113 (390)
                      ..++|||.|+||+|++|+.++..|...+.  +|+++|.+.....  .+..    ..++.+.+.    .++.++++++|+|
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~----~~v~~~~~Dl~d~~~~~~~~~~~d~V   97 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHM--TEDM----FCDEFHLVDLRVMENCLKVTEGVDHV   97 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSS--CGGG----TCSEEEECCTTSHHHHHHHHTTCSEE
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccch--hhcc----CCceEEECCCCCHHHHHHHhCCCCEE
Confidence            34578999999999999999999988875  8999998752110  0110    123332221    2355778999999


Q ss_pred             EEcCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~---g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |.+++.....   .....+.+..|+.-...+.+.+.+.... .+|++|
T Consensus        98 ih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~S  144 (379)
T 2c5a_A           98 FNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYAS  144 (379)
T ss_dssp             EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            9999864321   2345567788999999999988876544 444443

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.15  E-value=0.00033  Score=63.73  Aligned_cols=110  Identities=20%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi~  116 (390)
                      .++|.|+||+|++|+.++..|...+...+|+++|.+.....  ++..    ..+..+.+    ..++.+++++.|+||..
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~--~~~~----~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   91 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD--EEAY----KNVNQEVVDFEKLDDYASAFQGHDVGFCC   91 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC--SGGG----GGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc--cccc----CCceEEecCcCCHHHHHHHhcCCCEEEEC
Confidence            46899999999999999999988876568999998761100  0000    11222211    23456778899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|.... +....+.+..|..-...+++.+.+... ..++++|
T Consensus        92 ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~iv~~S  131 (242)
T 2bka_A           92 LGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGC-KHFNLLS  131 (242)
T ss_dssp             CCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCcccc-cCCcccceeeeHHHHHHHHHHHHHCCC-CEEEEEc
Confidence            986421 112235566788778888888776653 3455554

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.14  E-value=0.00052  Score=62.48  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      .++||+|||+ |.+|..++..|...+.  ++.++|.+..  .+.++...    .++..    ++.++++++|+||++...
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~----g~~~~----~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPS----AAQVT----FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBT----TSEEE----EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHc----CCcee----cHHHHHhCCCEEEECCCh
Confidence            4579999998 9999999999988876  7999998752  12233322    12221    457889999999998742


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                          ...+ +       ++ +    +....++.+++.++|+...
T Consensus        94 ----~~~~-~-------v~-~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           94 ----EHYS-S-------LC-S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             ----GGSG-G-------GG-G----GHHHHTTCEEEECCCCCHH
T ss_pred             ----HHHH-H-------HH-H----HHHhcCCCEEEEeCCCccc
Confidence                1111 1       11 1    2223378899999998854

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.13  E-value=0.0019  Score=66.08  Aligned_cols=101  Identities=11%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhC---CCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~---dADiVIi~  116 (390)
                      |||+|||+ |.+|+.++..|...+.  +|.+||.+..  .....+.........+..   ++++.++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEEEe
Confidence            68999999 9999999999998886  7999999762  222221110000122443   356767666   59999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~  163 (390)
                      ...+    .           .+.++.+.+..+. |+.+||..+|-...
T Consensus        76 Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~sng~~~  108 (478)
T 1pgj_A           76 VQAG----A-----------ATDSTIEQLKKVFEKGDILVDTGNAHFK  108 (478)
T ss_dssp             CCCS----H-----------HHHHHHHHHHHHCCTTCEEEECCCCCHH
T ss_pred             cCCh----H-----------HHHHHHHHHHhhCCCCCEEEECCCCChH
Confidence            6322    1           1334445555554 67778878877643

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.13  E-value=0.0011  Score=58.80  Aligned_cols=105  Identities=11%  Similarity=0.073  Sum_probs=71.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~  116 (390)
                      ++||.|+||+|++|+.++..|...+...++++++.+...      .    ...++.+.+.    .++.+++  +|+||.+
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~----~~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------E----HPRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------C----CTTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------c----CCCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            469999999999999999999988865689999987532      0    1223322211    1223333  8999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|.......+..+....|......+++.+.+.... .++++|
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  113 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVS  113 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            98654322445667788888889999988876543 455554

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=97.12  E-value=0.0009  Score=64.42  Aligned_cols=115  Identities=17%  Similarity=0.078  Sum_probs=72.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC--CCcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~--dADiVI  114 (390)
                      |||.|+||+|++|+.++..|... +.  +|++.|.+...+....+.+......++.+.+. +   ++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            68999999999999999888875 44  88999875310000112221112345544332 2   2345566  899999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh--CCC------cEEEEec
Q 016424          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC--CPN------ATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~--~p~------a~iiv~t  158 (390)
                      -++|.....  .....+.+..|+.-...+++.+.+.  .-.      +.+|++|
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~S  132 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIS  132 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEE
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeC
Confidence            999865310  0123456778888888888888877  433      3666664

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=97.10  E-value=0.0045  Score=58.18  Aligned_cols=107  Identities=18%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC---CCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~---t~dl~~al~dADiVIi~ag  118 (390)
                      |||.|+||+|++|+.++..|...+.  +++.+|.+.....  ++.    ...++.+.+   ..++.+++++ |+||-+++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~----~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFV----NPSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGS----CTTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhc----CCCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6899999999999999999998886  8999998651100  011    112222221   1124566777 99999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+...  .......+..|+.-...+.+.+.+.... .+|++|
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  112 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFAS  112 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeC
Confidence            65322  2345566788999999999998887644 344443

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.09  E-value=0.0016  Score=62.26  Aligned_cols=113  Identities=17%  Similarity=0.108  Sum_probs=73.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC--CCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMD  111 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~--dAD  111 (390)
                      .-+.|+|.|+||+|++|+.++..|...+.  +|+++|.+.....  ++....  ..+..+.+. +   ++.++++  ++|
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~D   90 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFKPT   90 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcCCC
Confidence            34457999999999999999999988875  8999998641100  011100  234443321 2   2446677  999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||.++|..........+ +..|+.-...+++.+.+... ..+|++|
T Consensus        91 ~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  135 (330)
T 2pzm_A           91 HVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGV-KRLLNFQ  135 (330)
T ss_dssp             EEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTC-SEEEEEE
T ss_pred             EEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCC-CEEEEec
Confidence            999999865432122223 67788888888888887653 3455554

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=97.09  E-value=0.0014  Score=62.46  Aligned_cols=116  Identities=18%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhC-CCC---cEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCCCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKIN-PLV---SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~-~~~---~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~dADiV  113 (390)
                      |||.|+||+|++|+.++..|... +..   .+++++|.....+....+........++.+.+. +   ++.+++.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            68999999999999999988875 222   489999975311100112211112344444332 2   344667899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |-++|.....  .....+.+..|+.-...+.+.+.+.... .+|++|
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~S  126 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVS  126 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9999864311  0122356778888888999888877533 455444

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=97.09  E-value=0.0039  Score=58.86  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC---CCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~---t~dl~~al~dADiVIi~  116 (390)
                      |+||.|+||+|++|+.++..|...+  ..+++.+.+. ....   +     ...++.+.+   ..++.++++++|+||-+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~~~~~---~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSGNEEF---V-----NEAARLVKADLAADDIKDYLKGAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSCCGGG---S-----CTTEEEECCCTTTSCCHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCCChhh---c-----CCCcEEEECcCChHHHHHHhcCCCEEEEC
Confidence            4689999999999999999998887  2444433332 1110   0     112222211   13456788999999999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++.+...  .......+..|+.-...+.+.+.+.... .+|++|
T Consensus        71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S  113 (313)
T 3ehe_A           71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTS  113 (313)
T ss_dssp             CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeC
Confidence            9865322  2345677888999999999998887644 455554

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.07  E-value=0.0038  Score=63.90  Aligned_cols=99  Identities=17%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc-ccCCCeEEEEeCCCChhhhh---CCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENAL---TGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~-~~~~~~v~~~~~t~dl~~al---~dADiVIi~a  117 (390)
                      |||+|||+ |.+|+.++..|...+.  +|.+||++...  +.++.. ......++.   ++++.+++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999999 9999999999998886  79999997621  122221 100122443   35676765   5999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~  163 (390)
                      ..+.               .+.++...+..+. |+.+||..+|-...
T Consensus        75 p~~~---------------~v~~vl~~l~~~l~~g~iII~~s~~~~~  106 (482)
T 2pgd_A           75 KAGQ---------------AVDNFIEKLVPLLDIGDIIIDGGNSEYR  106 (482)
T ss_dssp             CTTH---------------HHHHHHHHHHHHCCTTCEEEECSCCCHH
T ss_pred             CChH---------------HHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence            3221               1334444555554 67777777776543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.06  E-value=0.0025  Score=57.66  Aligned_cols=111  Identities=15%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi  115 (390)
                      ++++|.|+||+|++|+.++..|...+...++++++.+...  ..++..     .++.+.+    ..++.++++++|+||.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~--~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~vi~   75 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG--KEKIGG-----EADVFIGDITDADSINPAFQGIDALVI   75 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH--HHHTTC-----CTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc--hhhcCC-----CeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence            4679999999999999999999888423489999987521  122211     1111111    1245677899999999


Q ss_pred             cCCCCCC------------CCC---CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRK------------PGM---TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k------------~g~---~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+|....            +..   .-...+..|+.....+++.+.+.... .++++|
T Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           76 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             eccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            9885421            111   01134577888888888888877543 455543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.05  E-value=0.0018  Score=62.41  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCC--CcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-P---QLENALTG--MDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~d--ADi  112 (390)
                      +|+|.|+||+|++|+.++..|...+.  +|+++|.+.  .......+..   ...++.+.+. +   ++.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            47999999999999999999988876  899999875  2222222221   1233333321 2   23455665  899


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-++|.+...  .....+.+..|+.-...+.+.+.+......++++|
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  131 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  131 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEec
Confidence            99999864311  12334567788888888888888775344566554

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.04  E-value=0.0011  Score=62.99  Aligned_cols=119  Identities=13%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhC-----C-CCcEEEEEeCCchHHHHHHHhc-cc----C-C-----CeEEEEeCCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MD----T-G-----AVVRGFLGQP  101 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~-----~-~~~eL~L~Di~~~~g~a~DL~~-~~----~-~-----~~v~~~~~t~  101 (390)
                      .++|||+|||+ |.+|+.++..|...     + .  ++.+||. .  .....+.+ ..    . .     .+++.   ++
T Consensus         6 ~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~   76 (317)
T 2qyt_A            6 QQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCV---TD   76 (317)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEE---ES
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceE---ec
Confidence            34579999999 99999999988876     5 4  8999998 4  12222222 11    0 0     11222   13


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      +. ++++++|+||++...+.                +.++.+.+..+- |+..|+.++|-++..     +.+.+  .++.
T Consensus        77 ~~-~~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~~~-----~~l~~--~l~~  132 (317)
T 2qyt_A           77 NP-AEVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGADIA-----ERMRT--YLPD  132 (317)
T ss_dssp             CH-HHHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSSHH-----HHHTT--TSCT
T ss_pred             Cc-cccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCCcH-----HHHHH--HCCC
Confidence            43 56899999999874331                234455555543 577777788876543     22222  3555


Q ss_pred             Ccee-eccccc
Q 016424          181 KKLL-GVTMLD  190 (390)
Q Consensus       181 ~kvi-G~t~Ld  190 (390)
                      .+++ |++..+
T Consensus       133 ~~v~~g~~~~~  143 (317)
T 2qyt_A          133 TVVWKGCVYIS  143 (317)
T ss_dssp             TTBCEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            5554 445544

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.03  E-value=0.0025  Score=65.14  Aligned_cols=98  Identities=9%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC---CcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d---ADiVIi~ag  118 (390)
                      +||+|||+ |.+|+.++..|...+.  +|.+||++...  +.++........++.   ++++.+++++   +|+||++..
T Consensus         6 ~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilavp   77 (474)
T 2iz1_A            6 ANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMVQ   77 (474)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECCC
T ss_pred             CcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEcc
Confidence            68999999 9999999999998886  79999997521  112221100123443   3577777766   999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd  162 (390)
                      .+               ..+.++.+.+..+. |+.+||..+|-..
T Consensus        78 ~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~~  107 (474)
T 2iz1_A           78 AG---------------AATDATIKSLLPLLDIGDILIDGGNTHF  107 (474)
T ss_dssp             TT---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             Cc---------------hHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            22               12334445666555 6777777777653

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.02  E-value=0.0018  Score=62.08  Aligned_cols=113  Identities=18%  Similarity=0.095  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhCC--Cc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENALTG--MD  111 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~d--AD  111 (390)
                      .-++|||.|+||+|++|+.++..|...+.  +|+++|.+.... ...+.+.   ..++.+.+. +|   +.+++++  +|
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D   91 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDH---PNLTFVEGSIADHALVNQLIGDLQPD   91 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhc---CCceEEEEeCCCHHHHHHHHhccCCc
Confidence            34568999999999999999999988875  899999864110 0111111   234443321 22   4456777  99


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||.++|..........+ +..|+.-...+++.+.+... ..+|++|
T Consensus        92 ~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  136 (333)
T 2q1w_A           92 AVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNV-GRFVYFQ  136 (333)
T ss_dssp             EEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTC-SEEEEEE
T ss_pred             EEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCC-CEEEEEC
Confidence            999999865432122223 67788888888888877543 3455543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.02  E-value=0.0008  Score=67.74  Aligned_cols=139  Identities=20%  Similarity=0.259  Sum_probs=87.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCC---hhhh-hCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~d---l~~a-l~dADiVIi  115 (390)
                      +.++|.|+|+ |.+|+.++..|...+.  +++++|.+..  .+..+..... .-+.+  ..++   +.++ +.+||+||+
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~--~v~~~~~~g~-~vi~G--Dat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPD--HIETLRKFGM-KVFYG--DATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHH--HHHHHHHTTC-CCEES--CTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHH--HHHHHHhCCC-eEEEc--CCCCHHHHHhcCCCccCEEEE
Confidence            4578999999 9999999999998886  8999999872  1122222211 11111  1122   2333 789999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCcccHHHHHHHHHHhCCCCCCceeecccccHHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  194 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~  194 (390)
                      +.+.+           .    .-..++..+.+.+|+..|+.-+ ++.+.      +.+++.+   ...||--+..-+.++
T Consensus        75 ~~~~~-----------~----~n~~i~~~ar~~~p~~~Iiara~~~~~~------~~L~~~G---ad~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           75 AIDDP-----------Q----TNLQLTEMVKEHFPHLQIIARARDVDHY------IRLRQAG---VEKPERETFEGALKT  130 (413)
T ss_dssp             CCSSH-----------H----HHHHHHHHHHHHCTTCEEEEEESSHHHH------HHHHHTT---CSSCEETTHHHHHHH
T ss_pred             CCCCh-----------H----HHHHHHHHHHHhCCCCeEEEEECCHHHH------HHHHHCC---CCEEECccHHHHHHH
Confidence            86321           2    2345566677789997666655 44322      2345543   356776555555666


Q ss_pred             HHHHHHHhCCCCCCCc
Q 016424          195 NTFVAEVLGLDPRDVD  210 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~  210 (390)
                      -..+-..+|+++..+.
T Consensus       131 a~~~L~~lg~~~~~~~  146 (413)
T 3l9w_A          131 GRLALESLGLGPYEAR  146 (413)
T ss_dssp             HHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHcCCCHHHHH
Confidence            6666778888887764

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.01  E-value=0.0023  Score=60.42  Aligned_cols=109  Identities=13%  Similarity=0.078  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCC--Cc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTG--MD  111 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~d--AD  111 (390)
                      ..+.++|.|+||+|++|+.++..|...+.  +|+++|.+....   .+       .+..+.+. +   ++.+++++  .|
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~---~l-------~~~~~~~Dl~d~~~~~~~~~~~~~d   76 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEAK---LP-------NVEMISLDIMDSQRVKKVISDIKPD   76 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTCC---CT-------TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCccc---cc-------eeeEEECCCCCHHHHHHHHHhcCCC
Confidence            45678999999999999999999988876  899999875211   01       23333221 2   23455665  89


Q ss_pred             EEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||.++|....  ......+.+..|+.-...+.+.+.+......+|++|
T Consensus        77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  125 (321)
T 2pk3_A           77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG  125 (321)
T ss_dssp             EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            99999986431  112445677889998999999886664445566654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.01  E-value=0.0021  Score=56.36  Aligned_cols=137  Identities=14%  Similarity=0.062  Sum_probs=78.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCC---hhhh--hCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA--LTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~d---l~~a--l~dADiV  113 (390)
                      ..+||.|+|+ |.+|..++..|... +.  +++++|.++..  ...+....  ..+.. ...++   +.++  +.++|+|
T Consensus        38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~--~~~~~~~g--~~~~~-gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           38 GHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEA--AQQHRSEG--RNVIS-GDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHH--HHHHHHTT--CCEEE-CCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHH--HHHHHHCC--CCEEE-cCCCCHHHHHhccCCCCCCEE
Confidence            3569999998 99999999998877 76  79999998622  12222211  12211 01122   3444  7899999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHH
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  193 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R  193 (390)
                      |++.+.+           ..|.    .++..+.+.+|+..++..+|-.+..     +.+++.+   ...++.-...-..+
T Consensus       110 i~~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~~-----~~l~~~G---~~~vi~p~~~~a~~  166 (183)
T 3c85_A          110 LLAMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPDQL-----EGLLESG---VDAAFNIYSEAGSG  166 (183)
T ss_dssp             EECCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHHHH-----HHHHHHT---CSEEEEHHHHHHHH
T ss_pred             EEeCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHcC---CCEEEchHHHHHHH
Confidence            9986421           2333    3334566677888777666533222     3344443   24566543332344


Q ss_pred             HHHHHHHHhCCCCC
Q 016424          194 ANTFVAEVLGLDPR  207 (390)
Q Consensus       194 ~~~~la~~l~v~p~  207 (390)
                      +-..+.+.++.+..
T Consensus       167 l~~~~~~~~~~~~~  180 (183)
T 3c85_A          167 FARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHHCCCCC
T ss_pred             HHHHHHHhcCCccc
Confidence            55555566665443

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.00  E-value=0.0029  Score=61.11  Aligned_cols=116  Identities=16%  Similarity=0.025  Sum_probs=70.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH---HHHHHHhccc--CCCeEEEEeCC-C---ChhhhhCC--
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TGAVVRGFLGQ-P---QLENALTG--  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~---g~a~DL~~~~--~~~~v~~~~~t-~---dl~~al~d--  109 (390)
                      |++|.|+||+|++|+.++..|...+.  +|+++|.+...   ....++....  ....++.+.+. +   ++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            47899999999999999999988875  89999986521   1111221100  01244443321 1   23345554  


Q ss_pred             CcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEec
Q 016424          110 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p--~a~iiv~t  158 (390)
                      .|+||.++|.....  .......+..|+.-...+.+.+.+...  ...++++|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999864322  123445667888888888888887754  25566654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.00  E-value=0.0053  Score=63.04  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc-CCCeEEEEeCCCChhhhhC---CCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALT---GMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~-~~~~v~~~~~t~dl~~al~---dADiVIi  115 (390)
                      .++||+|||+ |.+|.+++..|...+.  +|++||++...  +.++.... ....+..   ++++.++++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            3579999999 9999999999999887  89999998721  22232211 1224443   346666655   6999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv  161 (390)
                      +...+               ..+.++...+..+- |+.+||..+|-.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            86322               12344455666654 677888777654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.99  E-value=0.01  Score=54.89  Aligned_cols=115  Identities=17%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.......++..+.+. +|.   .++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999886  899999986  22233444432112244443321 232   22232      


Q ss_pred             -CCcEEEEcCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHHhC--CCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPGMTRDDLFNINAG----IVRTLCEGIAKCC--PNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g~~r~~l~~~N~~----ii~~ia~~I~~~~--p~a~iiv~tN  159 (390)
                       ..|++|..+|...  ...-...+..|+.    ..+.+.+.+.+..  +.+.|++++-
T Consensus        85 g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             SCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence             4699999998753  2334455666655    5566666665543  2567777764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.98  E-value=0.0026  Score=57.82  Aligned_cols=103  Identities=19%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--H-HHHHHHhcccCCCeEEEEeCCCChhhhh----CCCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADISHMDTGAVVRGFLGQPQLENAL----TGMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~-g~a~DL~~~~~~~~v~~~~~t~dl~~al----~dADiV  113 (390)
                      |++|.|+||+|++|+.++..|+..+.  +|++.|.+..  . ....|+.+.            .++.+++    .+.|+|
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~v   66 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGL   66 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEE
Confidence            35899999999999999999998876  8999998751  1 011222221            1223333    389999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      |..+|.... .......+..|+.-...+.+.+.+.   ...+.++++|
T Consensus        67 i~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~s  113 (255)
T 2dkn_A           67 VCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVG  113 (255)
T ss_dssp             EECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred             EECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEe
Confidence            999987542 2234556677776666666665554   2335666665

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.98  E-value=0.00097  Score=61.89  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ++|||+|||+ |.+|..++..|...+.  ++.+||.+...  +.++.+.. .  ++.   ++++.++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~--~~~~~~~~-g--~~~---~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LPY---AMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CCB---CSSHHHHHHTCSEEEECSC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHHc-C--CEe---eCCHHHHHhcCCEEEEEeC
Confidence            4689999999 9999999998887774  89999998621  11222110 1  111   3467788999999999873

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=96.97  E-value=0.0019  Score=63.09  Aligned_cols=118  Identities=14%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH------------------HHHHHhcccCCCeEEEEeC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g------------------~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..++++|.|+||+|.||+.++..|+..+.  +|+++|......                  ...++.... ...++.+.+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~   84 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVG   84 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEES
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEEC
Confidence            45688999999999999999999988876  899999754111                  111111111 123444333


Q ss_pred             C-CC---hhhhhCC--CcEEEEcCCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          100 Q-PQ---LENALTG--MDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       100 t-~d---l~~al~d--ADiVIi~ag~p~k~--g~~r---~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      . +|   +.+++++  +|+||-+||....+  ..+.   ...+..|+.-...+.+.+.+......+|++|
T Consensus        85 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~S  154 (404)
T 1i24_A           85 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG  154 (404)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            2 22   3455676  99999999864321  1121   1356779988999999988876544566665

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.96  E-value=0.0012  Score=62.44  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=48.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||+ |.+|..++..|...+.  ++.+||.+...  +..+...    .++.   ++++.++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~----g~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDA--CKEFQDA----GEQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHc----CCee---cCCHHHHHhcCCEEEEeC
Confidence            58999999 9999999999988876  89999997621  1223221    1332   346778899999999985

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.96  E-value=0.0034  Score=63.78  Aligned_cols=119  Identities=13%  Similarity=0.057  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCch-HHHHHHHhccc--------------CCCeEEEEeCC-
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT-PGVTADISHMD--------------TGAVVRGFLGQ-  100 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~-~g~a~DL~~~~--------------~~~~v~~~~~t-  100 (390)
                      ..++++|.|+||+|++|+.++..|...+. ..+|++++.+.. ......+.+..              ...++..+.+. 
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl  149 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK  149 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence            45678999999999999999998887632 259999998762 11112222211              01356655432 


Q ss_pred             C---------ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          101 P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       101 ~---------dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +         ++.++++++|+||-+++....  ....+.+..|+.-...+++.+.+....-+|.+-|
T Consensus       150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence            1         234567799999999986533  2223456788888999999888766555444444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.96  E-value=0.00064  Score=54.50  Aligned_cols=73  Identities=29%  Similarity=0.384  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC--CCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--QPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~--t~dl~~al~dADiVIi~a  117 (390)
                      .++||.|+|+ |.+|+.++..|...+ ..+++++|.+....  ..+.+.  .........  ..++.++++++|+||.++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~--~~~~~~--~~~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSS-NYSVTVADHDLAAL--AVLNRM--GVATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCS-SEEEEEEESCHHHH--HHHHTT--TCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCC-CceEEEEeCCHHHH--HHHHhC--CCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4579999999 999999999998887 24899999986221  112211  112211110  124556789999999998


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      +
T Consensus        78 ~   78 (118)
T 3ic5_A           78 P   78 (118)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.96  E-value=0.0019  Score=59.92  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||+ |.+|..++..|...+.  +++++|.........++....  ..       +++.+++++||+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g--~~-------~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG--VT-------ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT--CE-------ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC--Cc-------CCHHHHHhcCCEEEEEC
Confidence            69999999 9999999999988876  888888732222222333211  11       13467889999999986

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.95  E-value=0.00082  Score=64.01  Aligned_cols=109  Identities=14%  Similarity=0.144  Sum_probs=69.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh-CCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-~dADiVIi~ag~p  120 (390)
                      |||+|||+ |.+|..++..|...+.  ++.++|.+...   .++.+...........   +..+++ .++|+||++.   
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~~~~~---~~~~~~~~~~D~vilav---   70 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQDIVV---KGYEDVTNTFDVIIIAV---   70 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCEEEEE---EEGGGCCSCEEEEEECS---
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeeccceec---CchHhcCCCCCEEEEeC---
Confidence            79999999 9999999999987775  78999987510   0011111111122211   224555 8999999986   


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                       |+..            +.++.+.+..+ .|+..|+.+.|-++...        .   +|.+++++-
T Consensus        71 -k~~~------------~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--------~---~~~~~v~~g  113 (294)
T 3g17_A           71 -KTHQ------------LDAVIPHLTYLAHEDTLIILAQNGYGQLE--------H---IPFKNVCQA  113 (294)
T ss_dssp             -CGGG------------HHHHGGGHHHHEEEEEEEEECCSSCCCGG--------G---CCCSCEEEC
T ss_pred             -CccC------------HHHHHHHHHHhhCCCCEEEEeccCcccHh--------h---CCCCcEEEE
Confidence             2221            33444455544 36788889999998763        1   677788754

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.95  E-value=0.0091  Score=54.82  Aligned_cols=117  Identities=18%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CCh----hhhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQL----ENAL-------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~dl----~~al-------  107 (390)
                      +.++|.|+||+|++|..++..|+..+. ..+++.|.+.......++.......++..+.+. +|.    .+++       
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            346899999999999999999998875 238899987632233344332212345444321 221    1222       


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----hC--CCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK----CC--PNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~----~~--p~a~iiv~tN  159 (390)
                      .+.|+||..+|...  ...-...+..|+.-...+.+.+..    ..  +.+.|+++|-
T Consensus        83 g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence            37899999998642  233445566666555555544433    22  2567777753

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0052  Score=63.27  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc-ccCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENALTG---MDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~-~~~~~~v~~~~~t~dl~~al~d---ADiVIi~a  117 (390)
                      .||+|||+ |.+|++++..|+..+.  +|.+||++..+  +.++.. ......++.   ++++.+++++   +|+||++.
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSIIG---ATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEEC---CSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeEE---eCCHHHHHhcCCCCCEEEEEc
Confidence            48999999 9999999999999887  89999998722  122222 100123432   4577777776   99999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~  163 (390)
                      ..+.               .++++.+.+..+. |+.+||..+|-...
T Consensus        83 p~~~---------------~v~~vl~~l~~~l~~g~iIId~s~~~~~  114 (497)
T 2p4q_A           83 KAGA---------------PVDALINQIVPLLEKGDIIIDGGNSHFP  114 (497)
T ss_dssp             CSSH---------------HHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred             CChH---------------HHHHHHHHHHHhCCCCCEEEECCCCChh
Confidence            3221               2445556666665 57788888876543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.91  E-value=0.011  Score=55.52  Aligned_cols=133  Identities=16%  Similarity=0.235  Sum_probs=71.1

Q ss_pred             CCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEE
Q 016424           19 YPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGF   97 (390)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~   97 (390)
                      ||-.+++..|+.-.  ....-+.+++.|.||+|++|..++..|+..+.  +|++.|.++ ....+.++...  ..++..+
T Consensus        11 ~~~~~~~~~~~~m~--~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~~   84 (273)
T 3uf0_A           11 VDLGTENLYFQSMT--GPFSLAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADG--GGSAEAV   84 (273)
T ss_dssp             ----------------CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTT--TCEEEEE
T ss_pred             ccccccccchhhcc--cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhc--CCcEEEE
Confidence            45556666665321  11133456899999999999999999999886  899999655 34455555443  2344444


Q ss_pred             eC-CCChhh---------hhCCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEe
Q 016424           98 LG-QPQLEN---------ALTGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus        98 ~~-t~dl~~---------al~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~  157 (390)
                      .. -+|..+         .+...|++|..+|......   .+..   ..+..|+.-.    +.+.+.+.+.. .+.||++
T Consensus        85 ~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~i  163 (273)
T 3uf0_A           85 VADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTI  163 (273)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred             EecCCCHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEE
Confidence            32 123211         1237899999999754221   2222   3455565444    44444444444 5667776


Q ss_pred             c
Q 016424          158 S  158 (390)
Q Consensus       158 t  158 (390)
                      +
T Consensus       164 s  164 (273)
T 3uf0_A          164 A  164 (273)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.91  E-value=0.0058  Score=56.17  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  ++++.|.+.  ......++.     .++..+.+. +|   +.++++     
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999886  899999986  333334441     233333221 22   233344     


Q ss_pred             --CCcEEEEcCCCCCCCC---------CCH---HHHHHHHHHHHHHHHHHHHHh----C-----CCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRKPG---------MTR---DDLFNINAGIVRTLCEGIAKC----C-----PNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g---------~~r---~~l~~~N~~ii~~ia~~I~~~----~-----p~a~iiv~t  158 (390)
                        ..|+||..+|......         .+.   ...+..|+.-...+.+.+..+    .     ..+.|++++
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~is  156 (265)
T 2o23_A           84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTA  156 (265)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEEC
T ss_pred             CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeC
Confidence              8999999998653221         222   234556665555555554443    1     346676665

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.91  E-value=0.0063  Score=55.75  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+.+. +|   +.++++      
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  899999986  23334444432  2344443321 23   223333      


Q ss_pred             -CCcEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~--k~--g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                       ..|+||..+|...  .+  ..+.   ...+..|+.-...+.+.+..+   ...+.+++++-
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence             6899999998654  11  1222   234556655554444444332   23566666653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.89  E-value=0.0048  Score=56.30  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.+. +|   +.++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999998886  899999986  233344444322  234433321 22   223333     


Q ss_pred             --CCcEEEEcCCCCCCC--CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k~--g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t  158 (390)
                        +.|+||..+|.....  ..+.   ...+..|+.-...+.+.+    .+. ..+.++++|
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~s  145 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTIT  145 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence              899999999864321  2232   234556665544444444    333 346666665

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.87  E-value=0.0003  Score=68.47  Aligned_cols=93  Identities=19%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||.|+||+|.+|+.++..|...+. .+++..|++                     ....++.++++++|+||-++|...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~-~~v~~~d~~---------------------~d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTD-HHIFEVHRQ---------------------TKEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCC-CEEEECCTT---------------------CCHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-CEEEEECCC---------------------CCHHHHHHHhccCCEEEECCcCCC
Confidence            6999999999999999998887763 277888874                     012345667788999999988654


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..  ...+....|+...+.+++.+.+......++.+|
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            21  112233456777777888887776554555554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.87  E-value=0.0019  Score=59.94  Aligned_cols=112  Identities=19%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.     ..+..+.+ -+|   ..++++      
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIG-----PAAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  899999986  233334442     12222221 122   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g---~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       +.|++|..+|......   .+..   ..+..|+.    +.+.+.+.+.+..+.+.|++++-
T Consensus        81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  142 (259)
T 4e6p_A           81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMAS  142 (259)
T ss_dssp             SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence             7999999999753211   2222   33455654    44555555555555677777753

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.86  E-value=0.01  Score=54.29  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=71.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al------  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  +++++|.+.  ......++...  ..++..+.+. +|.   .+.+      
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345889999999999999999999886  899999987  33444455432  2344443321 232   2222      


Q ss_pred             -CCCcEEEEcCCCCC----CC--CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 016424          108 -TGMDLVIIPAGVPR----KP--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       108 -~dADiVIi~ag~p~----k~--g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                       ...|++|..+|...    .+  ..+.   ...+..|+.-    .+.+.+.+.+.. .+.|++++--
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  149 (253)
T 3qiv_A           84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSST  149 (253)
T ss_dssp             HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC-
T ss_pred             cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCc
Confidence             27899999998731    11  1232   2345566655    555555555443 5667777643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.86  E-value=0.013  Score=50.06  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhh-hCCCcEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENA-LTGMDLV  113 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~a-l~dADiV  113 (390)
                      ...++|+|+|+ |.+|+.++..|...+.  +++++|.++...  ..+.. .....  .+.+. ++   +.++ ++++|+|
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~-~~g~~--~~~~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNS-EFSGF--TVVGDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCT-TCCSE--EEESCTTSHHHHHTTTGGGCSEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHh-cCCCc--EEEecCCCHHHHHHcCcccCCEE
Confidence            34579999999 9999999999988876  899999986211  11220 11112  22121 22   3333 7889999


Q ss_pred             EEcCC
Q 016424          114 IIPAG  118 (390)
Q Consensus       114 Ii~ag  118 (390)
                      |++.+
T Consensus        89 i~~~~   93 (155)
T 2g1u_A           89 FAFTN   93 (155)
T ss_dssp             EECSS
T ss_pred             EEEeC
Confidence            99875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.85  E-value=0.0021  Score=63.12  Aligned_cols=89  Identities=19%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhC----CCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALT----GMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~----dADiVIi  115 (390)
                      .+||+|||+ |.+|..++..|...+.  +|++||.+. ....+.++   .  .  ..   ++++.++++    +||+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~---G--~--~~---~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDE---G--F--DV---SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHT---T--C--CE---ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc---C--C--ee---eCCHHHHHHhcccCCCEEEE
Confidence            479999999 9999999999998885  899999986 22222222   1  1  22   135566665    5799999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +..                ...+.++.+.+..+.|+++|+.++
T Consensus        75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eCC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            862                112344445555566777665553

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.84  E-value=0.004  Score=57.19  Aligned_cols=115  Identities=15%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~----  108 (390)
                      ++++|.|+||+|++|..++..|+. .+.  +|++.|.+.  ......++....  .++..+.+ -+|   +.++++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999988 776  899999876  233444554322  23333322 123   223333    


Q ss_pred             ---CCcEEEEcCCCCCCCCC--C----HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          109 ---GMDLVIIPAGVPRKPGM--T----RDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       109 ---dADiVIi~ag~p~k~g~--~----r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                         +.|+||..+|.......  +    -...+..|+.-...+.+.+..+. +.+.|++++
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence               78999999987543221  1    12346667776777777766553 234555554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.83  E-value=0.0092  Score=49.19  Aligned_cols=100  Identities=10%  Similarity=0.053  Sum_probs=59.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCC---hhhh-hCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~d---l~~a-l~dADiVIi~  116 (390)
                      ++||.|+|+ |.+|+.++..|...+.  +++++|.++.  ....+...  ...+. ....++   +.++ +.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~--~~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASY--ATHAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTT--CSEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHh--CCEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            458999999 9999999999988875  7899998752  11222221  11211 111122   2222 6789999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      .+.+.          ..|..    ++..+.+.+|+-++...+||..
T Consensus        78 ~~~~~----------~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           78 IGANI----------QASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CCSCH----------HHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCCch----------HHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            86431          22332    3344455677744445556653

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.83  E-value=0.014  Score=54.02  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al------  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+... +|.   .+++      
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHh
Confidence            446889999999999999999998886  899999987  34444555433  2344444321 232   1222      


Q ss_pred             -CCCcEEEEcCCCCCCCC----CCHH---HHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKPG----MTRD---DLFNINAGIVRTLCEGIAK---CCPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g----~~r~---~l~~~N~~ii~~ia~~I~~---~~p~a~iiv~tN  159 (390)
                       ...|+||..+|.....+    .+..   ..+..|+.-...+.+.+..   ....+.||++|-
T Consensus       104 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS  166 (262)
T 3rkr_A          104 HGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISS  166 (262)
T ss_dssp             HSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence             35899999998732221    2222   3455565444444444322   234566777764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.83  E-value=0.0029  Score=61.69  Aligned_cols=112  Identities=17%  Similarity=0.050  Sum_probs=74.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCCCcEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMDLVI  114 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~dADiVI  114 (390)
                      ++|||.|+||+|.+|+.++..|...+ .  +|+++|.+..... ..+.   ....++.+.+. +   ++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVP---DHPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            46799999999999999999888877 5  8999998651100 1111   12345544331 1   3456788999999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t  158 (390)
                      -++|.....  ..+..+.+..|+.....+++.+.+. ... .+|.+|
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~S  150 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSA  150 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEE
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeC
Confidence            999864311  1234456778888888888888765 333 455554

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.81  E-value=0.0024  Score=60.27  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC--CcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d--ADiVIi~ag  118 (390)
                      ++||.|+||+|++|+.++..|...+.  +|+++|.+....   +    ....++.-   ..++.+++++  +|+||.++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~----~~~~Dl~d---~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---K----FEQVNLLD---SNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---C----eEEecCCC---HHHHHHHHHhhCCCEEEECCc
Confidence            36999999999999999999998875  899998754220   0    11122221   1244566765  899999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .....  ..+..+.+..|+.-...+++.+.+...  .++++|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123345567788888888888887653  566554

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.80  E-value=0.0041  Score=58.93  Aligned_cols=109  Identities=18%  Similarity=0.082  Sum_probs=71.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC--CCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~--dADiVI  114 (390)
                      ||||.|+||+|.+|+.++..|...+.  +|+.+|.+..... ..+.     ..++.+.+. +   ++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAIT-----EGAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSC-----TTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcC-----CCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            57999999999999999999988875  8899987641100 1111     123332221 2   2445667  899999


Q ss_pred             EcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -++|......  ....+.+..|+.-...+.+.+.+.... .+|.+|
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  117 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSS  117 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeC
Confidence            9998643211  233456778888888999888776533 455554

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.80  E-value=0.0014  Score=61.28  Aligned_cols=99  Identities=21%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~  116 (390)
                      ...+||.|+||+|.+|+.++..|...+.  +|+.+|.+.     .|+.+            ..++.++++  ++|+||.+
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d------------~~~~~~~~~~~~~d~vih~   70 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITN------------VLAVNKFFNEKKPNVVINC   70 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTC------------HHHHHHHHHHHCCSEEEEC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCC------------HHHHHHHHHhcCCCEEEEC
Confidence            3468999999999999999999988774  899998752     12221            123455666  79999999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|.....  .....+.+..|+.-...+.+.+.+...  .++++|
T Consensus        71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            9864311  123445677888888899988888754  555554

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.80  E-value=0.013  Score=54.27  Aligned_cols=116  Identities=21%  Similarity=0.200  Sum_probs=69.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.......++..+.+. +|.   .++++      
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  899999986  23334444332112344443321 232   22232      


Q ss_pred             -CCcEEEEcCCCCCC--C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRK--P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k--~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ..|++|..+|....  +  ..+..   ..+..|+    ...+.+.+.+.+.. .+.|++++-
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence             67999999997543  1  12222   3445555    33445555555544 456666653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.79  E-value=0.0048  Score=57.50  Aligned_cols=100  Identities=16%  Similarity=0.087  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~  116 (390)
                      |||.|+||+|++|+.++..|... +.  +|++.+.+....  .++..    ..++.+.+.    .++.++++++|+||..
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~----~~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWR----GKVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGB----TTBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhh----CCCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            68999999999999999988776 54  788888875211  11211    223333221    2456789999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|....        ...|+...+.+++.+.+.... .++.+|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~-~iv~~S  105 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVA-HIIFIG  105 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            875421        134667777888888776644 344443

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.79  E-value=0.017  Score=53.62  Aligned_cols=116  Identities=15%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh------hhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL------ENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl------~~al~dAD  111 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++........+..+.. -+|.      .+.+...|
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            45788889999999999999999886  899999987  3344455543322234444332 1221      12234789


Q ss_pred             EEEEcCCCCCCCC---CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          112 LVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       112 iVIi~ag~p~k~g---~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ++|..+|......   .+..   ..+..|+.-    .+.+.+.+.+ ...+.|++++-
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS  144 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIE-RKEGRVIFIAS  144 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTEEEEEEECC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCEEEEEcc
Confidence            9999999754321   2222   235666555    4444444443 34566777653

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=96.77  E-value=0.004  Score=61.86  Aligned_cols=114  Identities=11%  Similarity=0.063  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-----HHHHHHHhcc-------cCCCeEEEEeCC----CC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHM-------DTGAVVRGFLGQ----PQ  102 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-----~g~a~DL~~~-------~~~~~v~~~~~t----~d  102 (390)
                      ..+++|.|+||+|++|+.++..|...+.  +|++++.+..     ......+...       ....++..+.+.    .+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            4467999999999999999998866554  8899988762     1111222111       001344443321    12


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +. ++.++|+||-+++..... .........|+.-...+++.+.+  ....++++|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEC
Confidence            22 578999999999865322 33455677899999999999888  344555554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.77  E-value=0.001  Score=61.95  Aligned_cols=96  Identities=22%  Similarity=0.216  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~ag~  119 (390)
                      |||.|+||+|.+|+.++..|...+.  +|+.+|...     .|+.+            ..++.++++  ++|+||.+++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d------------~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITN------------ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            3899999999999999999988775  889988732     12221            123445666  69999999886


Q ss_pred             CCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .....  ....+.+..|+.-...+.+.+.+...  .++++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            54221  34566788899999999999988865  455554

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.77  E-value=0.016  Score=53.88  Aligned_cols=116  Identities=15%  Similarity=0.176  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+... +|   ..+++       
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999886  899999986  334444554311 2334433321 22   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|++|..+|......   .+..   ..+..|+    .+.+.+.+.+.+....+.|++++-
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVAS  158 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            37899999999754321   2222   2345554    345555566666555677777753

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.77  E-value=0.0045  Score=58.37  Aligned_cols=112  Identities=9%  Similarity=-0.008  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC-Cch----HHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT----PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di-~~~----~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      +||.|+||+|++|+.++..|...+.  +++..+. +..    .....++...  ...++.+.+    ..++.++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            5899999999999999999988876  7887776 421    0111111100  012332221    2345678899999


Q ss_pred             EEEcCCCCCCCCC-C-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          113 VIIPAGVPRKPGM-T-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       113 VIi~ag~p~k~g~-~-r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ||-+++.. .... + ..+.+..|+.-...+.+.+.+...-..+|++|
T Consensus        78 vih~A~~~-~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           78 IFHTASPI-DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             EEECCCCC---------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EEEcCCcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            99998632 1111 1 22467889988889988887762123455543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.76  E-value=0.019  Score=53.49  Aligned_cols=115  Identities=20%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC------------c--hHHHHHHHhcccCCCeEEEEeCC-CC--
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV------------N--TPGVTADISHMDTGAVVRGFLGQ-PQ--  102 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~------------~--~~g~a~DL~~~~~~~~v~~~~~t-~d--  102 (390)
                      +.+++.|+||+|++|..++..|+..+.  ++++.|.+            .  ......++...  ..++..+... +|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCCHH
Confidence            346899999999999999999999886  89999987            2  12222333322  2344444321 22  


Q ss_pred             -hhhhhC-------CCcEEEEcCCCCCCCCCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          103 -LENALT-------GMDLVIIPAGVPRKPGMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       103 -l~~al~-------dADiVIi~ag~p~k~g~~r---~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ..++++       ..|++|..+|...... +.   ...+..|+.    +.+.+.+.+.+....+.|++++-
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSA-GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS  158 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSS-THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence             222333       7899999999753222 22   234555543    44555555655555677877763

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.76  E-value=0.0042  Score=59.35  Aligned_cols=113  Identities=19%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h-------HHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC-
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-------PGVTADISHMDTGAVVRGFLGQ-P---QLENALT-  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~-------~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~-  108 (390)
                      ++|.|+||+|++|+.++..|...+.  +|+++|... .       .....++.... ...+..+.+. +   ++.++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            6899999999999999999988875  788888643 1       11222332211 1233333221 2   2345566 


Q ss_pred             -CCcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                       ++|+||.++|.....  .....+.+..|+.-...+.+.+.+.... .+|++|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence             899999999864211  1233456778888888898888776543 455443

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.75  E-value=0.011  Score=56.10  Aligned_cols=116  Identities=18%  Similarity=0.201  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.. -+|   ..++++     
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999886  899999987  344445554332  33443332 123   222232     


Q ss_pred             --CCcEEEEcCCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g---~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                        ..|++|..+|......   .+..   ..+..|+.    +.+.+.+.+.+..+.+.|++++-
T Consensus       106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  168 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS  168 (301)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence              7899999999753211   2222   34455543    44455555555555677777764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.75  E-value=0.01  Score=53.66  Aligned_cols=78  Identities=21%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      ++++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.. -+|   ..++++      
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            45788999999999999999999886  799999986  344444554221 233443322 122   222333      


Q ss_pred             -CCcEEEEcCCCCC
Q 016424          109 -GMDLVIIPAGVPR  121 (390)
Q Consensus       109 -dADiVIi~ag~p~  121 (390)
                       ..|++|..+|...
T Consensus        79 g~id~li~~Ag~~~   92 (235)
T 3l77_A           79 GDVDVVVANAGLGY   92 (235)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCcccc
Confidence             7899999999754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.73  E-value=0.031  Score=51.56  Aligned_cols=115  Identities=11%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+... +|   ..+++       
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQF--PGQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCS--TTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788899999999999999999886  899999987  33444455432  2344444321 23   22222       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|++|..+|.... +  ..+..   ..+..|+.-    .+.+.+.+.+....+.|++++-
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence            267999999986432 2  12222   234555543    4444455545555677777753

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.72  E-value=0.0017  Score=60.07  Aligned_cols=103  Identities=18%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi~a  117 (390)
                      +||.|+||+|++|+.++..|...+.  +|+++|.+....    +.     ..++.+.+    ..++.+++++.|+||..+
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~----~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGA----AE-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCC----CC-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccc----cC-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999998888774  899999875210    00     12222221    123557789999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |..  ........+..|+.-...+.+.+.+... ..++++|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGK-PRIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeC
Confidence            865  2334456778888888888888877543 3455554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.72  E-value=0.0059  Score=55.52  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi  115 (390)
                      +++|.|+||+|++|+.++..|+..+ .  ++++++.+...     +.... ...+..+.+.    .++.++++++|+||.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~-----~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~   94 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAK-----IHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIVYA   94 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGG-----SCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhh-----hcccc-cCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            5689999999999999999998887 4  89999987521     11111 1234433321    245677899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+|.+.      .+.      ..+.+.+.+.+... ..||++|
T Consensus        95 ~a~~~~------~~~------~~~~~~~~~~~~~~-~~iV~iS  124 (236)
T 3qvo_A           95 NLTGED------LDI------QANSVIAAMKACDV-KRLIFVL  124 (236)
T ss_dssp             ECCSTT------HHH------HHHHHHHHHHHTTC-CEEEEEC
T ss_pred             cCCCCc------hhH------HHHHHHHHHHHcCC-CEEEEEe
Confidence            886421      111      13355666665543 3455554

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.72  E-value=0.022  Score=52.97  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.+. +|   +.+++      
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999998886  899999986  233334444322  344443321 22   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCCC---C---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 016424          108 -TGMDLVIIPAGVPRKPGM---T---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  161 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g~---~---r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNPv  161 (390)
                       .+.|+||..+|.......   +   ....+..|+.-...+.+.+..+   ...+.||+++-..
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  169 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAA  169 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechh
Confidence             378999999987542211   1   1234556655544444443322   3456677776443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.72  E-value=0.005  Score=59.21  Aligned_cols=66  Identities=21%  Similarity=0.371  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .|+||.+||- |.+|++++..|...+.  +++.||++.  ..+.+|....    .+.   ..++.+++++||+||++-
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~--~~~~~l~~~G----a~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ--SAVDGLVAAG----ASA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH--HHHHHHHHTT----CEE---CSSHHHHHTTCSEEEECC
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH--HHHHHHHHcC----CEE---cCCHHHHHhcCCceeecC
Confidence            4679999999 9999999999999887  899999975  2233344322    122   246789999999999985

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.72  E-value=0.0061  Score=58.99  Aligned_cols=134  Identities=19%  Similarity=0.215  Sum_probs=79.6

Q ss_pred             CCCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh--CCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al--~dADiVIi~  116 (390)
                      .++||.|||. |+.|.+ +|..|...+.  ++..+|..........|...  ...+  +.|. +. +.+  .++|+||.+
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~--gi~v--~~g~-~~-~~l~~~~~d~vV~S   73 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEAL--GIDV--YEGF-DA-AQLDEFKADVYVIG   73 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHT--TCEE--EESC-CG-GGGGSCCCSEEEEC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhC--CCEE--ECCC-CH-HHcCCCCCCEEEEC
Confidence            4679999999 999996 8888888887  99999997522122334432  2333  3343 33 445  489999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCC--cccHHHHHHHHHHhCCCCCCceee
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPV--NSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-~~p~a~iiv~tNPv--d~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      .|+|...-+ ......++++++.++ +.+.+ ...+..+|-+|=-.  .+++.+++.+++.. ++++.-++|
T Consensus        74 pgi~~~~p~-~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~-g~~~~~~~g  142 (326)
T 3eag_A           74 NVAKRGMDV-VEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA-GLAPGFLIG  142 (326)
T ss_dssp             TTCCTTCHH-HHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT-TCCCEEECS
T ss_pred             CCcCCCCHH-HHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc-CCCceEEec
Confidence            998853211 112233455555443 22222 23344555554443  46667777777665 444433343

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.72  E-value=0.0082  Score=56.37  Aligned_cols=134  Identities=16%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             CCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEE
Q 016424           20 PPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF   97 (390)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~   97 (390)
                      ||--|+++|+.........-+.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~   87 (275)
T 4imr_A           12 DLGTENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQEL   87 (275)
T ss_dssp             ------CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEE
T ss_pred             CccccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEE
Confidence            34445555552211111123456888999999999999999999886  899999987  344555554422  334433


Q ss_pred             eCC-CC---hhhhh------CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEe
Q 016424           98 LGQ-PQ---LENAL------TGMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus        98 ~~t-~d---l~~al------~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      .+. +|   ..+.+      ...|++|..+|......   .+..   ..+..|+.    +.+.+.+.+.+. ..+.||++
T Consensus        88 ~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~i  166 (275)
T 4imr_A           88 AGDLSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSI  166 (275)
T ss_dssp             ECCTTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred             EecCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence            321 12   22222      26899999998754321   2332   23455544    444444444444 35667776


Q ss_pred             c
Q 016424          158 S  158 (390)
Q Consensus       158 t  158 (390)
                      +
T Consensus       167 s  167 (275)
T 4imr_A          167 G  167 (275)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.71  E-value=0.014  Score=53.93  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++..   ..++..+.+. +|   +.++++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998886  899999876  2223333422   1134443321 22   223333     


Q ss_pred             --CCcEEEEcCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKP-----GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~-----g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                        +.|+||..+|.....     ..+.   ...+..|+.-...+.+.+..+   ...+.+++++-
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence              789999999865321     1222   234566765555555555443   23566777653

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.71  E-value=0.017  Score=52.47  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=68.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...   .++..+.+. +|   +.++++      
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998886  899999876  22233333321   234443321 22   222222      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r---~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ..|+||..+|.....   ..+.   ...+..|+.    ..+.+.+.+.+....+.|++++.
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS  142 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSS  142 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence             589999999865321   1222   234566765    34444444444332266777764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.71  E-value=0.013  Score=54.93  Aligned_cols=117  Identities=16%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.+. +|   +.++++     
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999886  899999986  233344443321 2344444321 22   222333     


Q ss_pred             --CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~----~~p~a~iiv~tN  159 (390)
                        ..|+||..+|.....   ..+.   ...+..|+.-...+.+.+..    ....+.+++++-
T Consensus       102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence              459999999864321   1222   23455565554444444433    344567777653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.70  E-value=0.023  Score=52.65  Aligned_cols=115  Identities=22%  Similarity=0.321  Sum_probs=70.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.+.  ....+.++.... ..++..+... +|.   ++++       
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45788889999999999999999886  899999987  344555665432 1345544321 232   2222       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      -..|++|..+|.... +  ..+..   ..+..|+.-.    +.+.+.+.+.. .+.||+++-
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  147 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSS  147 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            278999999986432 2  22332   2355565444    44444444434 455666653

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.70  E-value=0.011  Score=54.29  Aligned_cols=81  Identities=14%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCC----CChhhhhC----
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQ----PQLENALT----  108 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~----  108 (390)
                      -++++|.|+||+|++|..++..|+..+. ..+|++.|.+.. .....++...  ..++..+.+.    .++.++++    
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~   96 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN--HSNIHILEIDLRNFDAYDKLVADIEG   96 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH--CTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhcc--CCceEEEEecCCChHHHHHHHHHHHH
Confidence            3456899999999999999999998871 138999999862 1122334321  1234433221    23334444    


Q ss_pred             -----CCcEEEEcCCCCC
Q 016424          109 -----GMDLVIIPAGVPR  121 (390)
Q Consensus       109 -----dADiVIi~ag~p~  121 (390)
                           ..|+||..+|...
T Consensus        97 ~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHGGGCCSEEEECCCCCC
T ss_pred             hcCCCCccEEEECCCcCC
Confidence                 6999999999754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.68  E-value=0.0044  Score=57.84  Aligned_cols=74  Identities=19%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-------------------hH--HHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------------TP--GVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-------------------~~--g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|||+ |++|+.++..|+..+ +.+|.|+|.+.                   .+  ..+..+.+......++.+...
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAG-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHT-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcC-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            39999999 999999999998877 46899999985                   12  223345444333455554311


Q ss_pred             ---CChhhhhCCCcEEEEcC
Q 016424          101 ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ---~dl~~al~dADiVIi~a  117 (390)
                         .++.+.++++|+||.+.
T Consensus       110 ~~~~~~~~~~~~~DvVi~~~  129 (249)
T 1jw9_B          110 LDDAELAALIAEHDLVLDCT  129 (249)
T ss_dssp             CCHHHHHHHHHTSSEEEECC
T ss_pred             CCHhHHHHHHhCCCEEEEeC
Confidence               12345678999999986

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.67  E-value=0.0012  Score=58.42  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=67.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhC---CCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~---dADiVIi~  116 (390)
                      ++|.|+||+|++|..++..|+..    +|++.|.+.  ......++.......++.-   ..++.++++   +.|+||..
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLAD---ELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTTS---HHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCCC---HHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999988876    899999976  2222233321000111110   123344555   89999999


Q ss_pred             CCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          117 AGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       117 ag~p~k~g------~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +|......      ......+..|+.-...+.+.+.+ .+.+.+++++-
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF-QKGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE-EEEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh-cCCcEEEEEcC
Confidence            98753211      12234567788777777777633 23456666654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.67  E-value=0.028  Score=52.74  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.. -+|   .+++++     
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999886  899999987  344555554432  23333221 122   223333     


Q ss_pred             --CCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                        ..|++|..+|......   .+..   ..+..|+    .+.+.+.+.+.+....+.|++++
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~is  168 (276)
T 3r1i_A          107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTA  168 (276)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence              7899999999754321   2222   2344554    34455555555555557777765

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=96.67  E-value=0.0058  Score=58.21  Aligned_cols=113  Identities=18%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC--CCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT--GMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~--dADiV  113 (390)
                      |||.|+||+|++|+.++..|...+.  +++++|...  ......++.... ...+..+.+. +|   +.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            6899999999999999999988876  888888643  111222222211 1123322221 22   334454  58999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       114 Ii~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |-++|.....  .....+.+..|+.-...+.+.+.+.... .++++|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999864211  0123456778888888888888776543 444443

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=96.67  E-value=0.0017  Score=63.17  Aligned_cols=115  Identities=15%  Similarity=0.006  Sum_probs=69.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc-----CCC-eEEEEeCC-CC---hhhhhCC--
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGA-VVRGFLGQ-PQ---LENALTG--  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~-----~~~-~v~~~~~t-~d---l~~al~d--  109 (390)
                      ++|.|+||+|++|+.++..|...+.  +|+++|.+........+.+..     ... .++.+.+. +|   +.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999988875  899999865210000011110     011 44444332 22   3345665  


Q ss_pred             CcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEec
Q 016424          110 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~----p~a~iiv~t  158 (390)
                      .|+||-++|.....  .......+..|+.-...+.+.+.+..    +.+.+|++|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999864321  01233456677777777777776654    235666654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.66  E-value=0.0044  Score=59.18  Aligned_cols=113  Identities=22%  Similarity=0.260  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCC-----CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhh-CC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENAL-TG  109 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~-----~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al-~d  109 (390)
                      ++|+|.|+||+|++|+.++..|...+.     ..+|+++|.+......      .....+..+.+.    .++.+++ .+
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~   86 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------GFSGAVDARAADLSAPGEAEKLVEAR   86 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------TCCSEEEEEECCTTSTTHHHHHHHTC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------ccCCceeEEEcCCCCHHHHHHHHhcC
Confidence            467999999999999999998887761     1389999986511100      012344444321    2344556 48


Q ss_pred             CcEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEec
Q 016424          110 MDLVIIPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~-g~~r~~l~~~N~~ii~~ia~~I~~~~----p~a~iiv~t  158 (390)
                      +|+||-++|..... .......+..|+.-...+.+.+.+..    +...+|++|
T Consensus        87 ~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           87 PDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             CSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            99999999865310 11234456778877788888877765    234555554

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.66  E-value=0.02  Score=52.01  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      +++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.+. +|   +.++++      
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35789999999999999999998885  899999876  233333441111 2344444321 22   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC------CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKPG------MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g------~~r---~~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                       +.|+||..+|......      .+.   ...+..|+.-.    +.+.+.+.+.. .+.+++++
T Consensus        79 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~is  141 (250)
T 2cfc_A           79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIA  141 (250)
T ss_dssp             SCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEEC
Confidence             7899999998643211      122   23345565433    44444444443 45666665

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.66  E-value=0.0018  Score=60.85  Aligned_cols=105  Identities=12%  Similarity=0.039  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi  115 (390)
                      +++|.|+||+|++|+.++..|...+ .  +|++++.+.....+.++...    .++.+.+.    .++.++++++|+||.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~----~~~~~~~D~~d~~~l~~~~~~~d~vi~   78 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQ----GAEVVQGDQDDQVIMELALNGAYATFI   78 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHT----TCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHC----CCEEEEecCCCHHHHHHHHhcCCEEEE
Confidence            4689999999999999998887765 4  89999987632222333321    12222221    245678999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+|.....      ....|....+.+++.+.+.... .++..|
T Consensus        79 ~a~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           79 VTNYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CCCHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             eCCCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            98642111      1245666777777777776533 344443

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.64  E-value=0.0051  Score=56.73  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      .++|.|.||+|++|..++..|+..+.  +|++.|.+.  ......++     ..++..+.+. +|   ..++++      
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45889999999999999999999886  899999976  22233333     1233333211 22   222222      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ..|++|..+|.....   ..+..   ..+..|+.    ..+.+.+.+.+..  +.|++++-
T Consensus        79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS  138 (253)
T 1hxh_A           79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS  138 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence             469999999975321   12322   34556644    4455555555443  67777763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.64  E-value=0.027  Score=52.63  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhhC---
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT---  108 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al~---  108 (390)
                      -+.+++.|.||+|++|..++..|+..+.  ++++.|.+.   ......++....  .++..+.+ -+|.   +++++   
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  104 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETV  104 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999886  888887765   233444454322  33443332 1232   22333   


Q ss_pred             ----CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          109 ----GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       109 ----dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                          ..|++|..+|......   .+.   ...+..|+.-...+.+.+..+- ..+.||+++-
T Consensus       105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                7899999999754321   222   2345667666666666665553 3567777754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.63  E-value=0.013  Score=53.99  Aligned_cols=112  Identities=18%  Similarity=0.270  Sum_probs=69.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.     .++..+.. -+|   .++++       
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQALT   78 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45889999999999999999999886  899999986  233333441     22222211 112   22223       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      -..|++|..+|.... +  ..+..   ..+..|+.-    .+.+.+.+.+....+.|++++-
T Consensus        79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  140 (247)
T 3rwb_A           79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIAS  140 (247)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            378999999986432 2  12322   335555443    4445555766665677777763

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.63  E-value=0.014  Score=53.79  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.......++..+.+. +|   ..++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999998886  899999986  23334444321101134443321 22   223343      


Q ss_pred             CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.|++|..+|.....   ..+.   ...+..|+.-.    +.+.+.+.+.. .+.|++++
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  143 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIG  143 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence            589999999865422   1222   23455565444    44555554443 45666665

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.63  E-value=0.0067  Score=57.02  Aligned_cols=97  Identities=15%  Similarity=0.019  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiV  113 (390)
                      ++||.|+||+|.+|+.++..|...+.  ++++++.+..   ...+..+.... ...++.+.+.    .++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            57899999999999999998888775  7888988741   22222222111 1123332221    2466889999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~  149 (390)
                      |.+++.... +        .|....+.+++.+.+.+
T Consensus        81 i~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           81 ISALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             EECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            999875431 1        12333455666666654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.63  E-value=0.03  Score=51.50  Aligned_cols=114  Identities=18%  Similarity=0.286  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-------  108 (390)
                      +++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.. -+|   ..++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999886  899999986  233444454322  23433322 123   223333       


Q ss_pred             CCcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..|++|..+|.....   ..+..   ..+..|+.    +.+.+.+.+.+....+.||+++-
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            789999999864321   12222   33555543    44555555555443567777653

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.62  E-value=0.0078  Score=56.48  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      |||.|+||+|.||+.++..|...+.  +|+.+..+...            ..+..  ...+ .+++.++|.||-.+|.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~------------~~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGP------------GRITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCT------------TEEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCc------------Ceeec--chhh-HhhccCCCEEEEeccCcc
Confidence            8999999999999999999999887  88888765311            12221  0112 467899999999887532


Q ss_pred             CC-----CC-CHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEE
Q 016424          122 KP-----GM-TRDDLFNINAGIVRTLCEGIAKCCP-NATVNL  156 (390)
Q Consensus       122 k~-----g~-~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv  156 (390)
                      -.     .. ...+....|+...+.+.+.+....- ..+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~  105 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVL  105 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            21     11 1234566778778888887777653 333443

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.62  E-value=0.0073  Score=54.81  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  ++++.|.+.  ......++.... ..++..+.+. +|   +.++++      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45889999999999999999998886  899999976  223333343211 1234433221 22   223343      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia----~~I~~~~p~a~iiv~t  158 (390)
                       +.|+||..+|.....   ..+.   ...+..|+.-...+.    +.+.+. ..+.++++|
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~s  143 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNIS  143 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence             799999999875432   1222   234556665554443    344333 345666665

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.62  E-value=0.011  Score=54.56  Aligned_cols=114  Identities=18%  Similarity=0.257  Sum_probs=71.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-------C
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-------G  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-------d  109 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.......++...  ..++..+... +|   ..++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARH--GVKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45889999999999999999999886  89999987643333445432  1234433221 22   233444       7


Q ss_pred             CcEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       110 ADiVIi~ag~p~k~---g~~r---~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .|++|..+|.....   ..+.   ...+..|+.    ..+.+.+.+.+.. .+.|++++-
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  138 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS  138 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            99999999875321   1222   234566665    5566666665543 466777653

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.00083  Score=66.02  Aligned_cols=73  Identities=25%  Similarity=0.238  Sum_probs=46.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~  116 (390)
                      ..+.|||.|+|| |.||+.++..|....   ++.+.|++....  ..+.+..  ..+..= ....++.+.++++|+||.+
T Consensus        13 ~g~~mkilvlGa-G~vG~~~~~~L~~~~---~v~~~~~~~~~~--~~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           13 EGRHMKVLILGA-GNIGRAIAWDLKDEF---DVYIGDVNNENL--EKVKEFA--TPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHTTTS---EEEEEESCHHHH--HHHTTTS--EEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCCccEEEEECC-CHHHHHHHHHHhcCC---CeEEEEcCHHHH--HHHhccC--CcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            456789999999 999999998887653   899999986211  1122211  122210 0113466788999999998


Q ss_pred             CC
Q 016424          117 AG  118 (390)
Q Consensus       117 ag  118 (390)
                      .+
T Consensus        85 ~p   86 (365)
T 3abi_A           85 LP   86 (365)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.61  E-value=0.0051  Score=59.92  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=47.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .+||+|||+ |.+|..++..|...+.  +++++|.+..  ...+.+.     .  ++.   + ++.+++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~a~~~-----G--~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEAH-----G--LKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHT-----T--CEE---E-CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHHHC-----C--CEE---c-cHHHHHhcCCEEEEeC
Confidence            468999999 9999999999998885  7899998762  2222221     1  222   1 5678899999999986

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.61  E-value=0.0069  Score=59.53  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...+|+|||+ |.+|...+..+.....+.+|.+||.+.  +...+.++... ....+..   .+++++++++||+||++.
T Consensus       128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            4569999999 999999887765433467999999986  34455555432 1223443   357889999999999975


Q ss_pred             CC
Q 016424          118 GV  119 (390)
Q Consensus       118 g~  119 (390)
                      ..
T Consensus       203 ps  204 (350)
T 1x7d_A          203 AD  204 (350)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.60  E-value=0.018  Score=53.22  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh---hh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---NA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~a-------l  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.+ -+|..   ++       +
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999886  899999986  333444554322  34444332 12321   11       2


Q ss_pred             CCCcEEEEcCCCC-C-CC--CCCHH---HHHHHHHHHHH----HHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVP-R-KP--GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p-~-k~--g~~r~---~l~~~N~~ii~----~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...|++|..+|.. . .+  ..+..   ..+..|+.-..    .+.+.+.+. ..+.||+++
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~is  143 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTA  143 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            3789999999875 2 22  12222   33455654444    444444333 346677765

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.60  E-value=0.017  Score=54.20  Aligned_cols=112  Identities=18%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhCC------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALTG------  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~d------  109 (390)
                      +++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...   .++..+.+. +|   ..++++.      
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999886  899999986  23334444321   234333221 22   2233443      


Q ss_pred             -CcEEEEcCCCCCC--C--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          110 -MDLVIIPAGVPRK--P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 -ADiVIi~ag~p~k--~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                       .|++|..+|....  +  ..+..   ..+..|+.-    .+.+.+.+.+....+.|++++
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~is  157 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLG  157 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence             4999999997532  2  12222   235555444    455555555554332677665

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.60  E-value=0.023  Score=51.56  Aligned_cols=117  Identities=18%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  ++++. +.+.  ......++...  ..++..+.+. +|   +.++++    
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998886  88888 4544  23333444332  2344443321 23   222232    


Q ss_pred             ---CCcEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424          109 ---GMDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (390)
Q Consensus       109 ---dADiVIi~ag~p~k~------g~~r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP  160 (390)
                         +.|+||..+|.....      .......+..|+.-...+.+.+..+   ...+.+++++-.
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  143 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSI  143 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence               789999999875321      1122345666665544444444332   234667777643

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.60  E-value=0.013  Score=56.37  Aligned_cols=117  Identities=18%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|+||..++..|+..+.  +|++.|.+.  ......++........+..+.. -+|   ..++++      
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999886  899999987  3334444443221124444432 123   222332      


Q ss_pred             -CCcEEEEcCCCCCCCC---CCH---HHHHHHHH----HHHHHHHHHHHHh-----CCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKC-----CPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g---~~r---~~l~~~N~----~ii~~ia~~I~~~-----~p~a~iiv~tN  159 (390)
                       ..|+||..+|......   .+.   ...+..|+    .+.+.+.+.+.+.     ...+.|+++|-
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS  152 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS  152 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence             5699999999643211   222   23445554    3444444555443     24567777753

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.58  E-value=0.0021  Score=60.08  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC--CcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d--ADiVIi~ag~  119 (390)
                      |||.|+||+|.+|+.++..|. .+.  +++.+|.+..      ..    ..++.-   ..++.+++++  +|+||-++|.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~------~~----~~D~~d---~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK------EF----CGDFSN---PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS------SS----CCCTTC---HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc------cc----cccCCC---HHHHHHHHHhcCCCEEEECccc
Confidence            689999999999999999888 664  8999998641      00    011110   1234566776  9999999986


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ....  .....+.+..|+.....+.+.+.+...  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            4311  234556778899889999998877653  555554

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.58  E-value=0.015  Score=53.58  Aligned_cols=112  Identities=14%  Similarity=0.082  Sum_probs=63.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .+++.|.||+|++|..++..|+..+.  ++++.|.+.  ......++.     .++..+.. -+|   ..++++      
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999886  899999986  222333331     12222221 122   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC-------CCHH---HHHHHHHHHHHHHHHHHHHh---------CCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPG-------MTRD---DLFNINAGIVRTLCEGIAKC---------CPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g-------~~r~---~l~~~N~~ii~~ia~~I~~~---------~p~a~iiv~tN  159 (390)
                       ..|++|..+|......       .+..   ..+..|+.-...+.+.+..+         ...+.|++++-
T Consensus        80 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS  150 (257)
T 3tpc_A           80 GHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTAS  150 (257)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence             8999999998653211       2222   34555654444444444333         23566777653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.58  E-value=0.015  Score=53.38  Aligned_cols=115  Identities=18%  Similarity=0.207  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC-Cc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di-~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|. +.  ......++...  ..++..+.+. +|   +.++++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  8999998 54  23333444332  2344443321 22   222333     


Q ss_pred             --CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~----~ia~~I~~~~p~a~iiv~tN  159 (390)
                        +.|+||..+|.....   ..+..   ..+..|+.-..    .+.+.+.+..+.+.|+++|-
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              789999999875321   12222   34555544433    44444444343567777753

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.58  E-value=0.012  Score=54.30  Aligned_cols=114  Identities=15%  Similarity=0.149  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.+ -+|   ..++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  899999986  233334443210 123443322 122   222333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                       +.|+||..+|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.||+++
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~is  143 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNA  143 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence             789999999875321   12322   334555444    344444444433 46677665

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.57  E-value=0.05  Score=50.82  Aligned_cols=115  Identities=15%  Similarity=0.180  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc------------------hHHHHHHHhcccCCCeEEEEeC-CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------------------TPGVTADISHMDTGAVVRGFLG-QP  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~------------------~~g~a~DL~~~~~~~~v~~~~~-t~  101 (390)
                      .+.+.|+||+|++|..++..|+..+.  ++++.|++.                  ....+.++...  ..++..+.. -+
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   86 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDVR   86 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCCC
Confidence            45889999999999999999999886  899999861                  12222333322  234444432 12


Q ss_pred             Ch---hhhh-------CCCcEEEEcCCCCCCCC----CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          102 QL---ENAL-------TGMDLVIIPAGVPRKPG----MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       102 dl---~~al-------~dADiVIi~ag~p~k~g----~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |.   .+++       ...|++|..+|......    .+..   ..+..|+.    +.+.+.+.+.+....+.|++++-
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            32   2222       37899999999754322    2322   23455543    44555555555555677777763

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.56  E-value=0.05  Score=49.82  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a-------l  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++...  ..++..+... +|.   .++       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  899999986  33344445432  2344443321 232   122       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|++|..+|.....   ..+..   ..+..|+.-.    +.+.+.+.+..  +.|++++-
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            3789999999875321   12322   3355565443    44444444433  66777753

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.55  E-value=0.0043  Score=59.77  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ...++|+|||+ |.+|..++..+.....+.++.+||++.  ....+.++..     .++.   .+++++++++||+|+++
T Consensus       133 ~~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~-----~~~~---~~~~~e~v~~aDiVi~a  203 (312)
T 2i99_A          133 PSSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG-----EVRV---CSSVQEAVAGADVIITV  203 (312)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS-----CCEE---CSSHHHHHTTCSEEEEC
T ss_pred             CCCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC-----CeEE---eCCHHHHHhcCCEEEEE
Confidence            34579999999 999999998887652256899999986  2223322221     2333   35788999999999997


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      .
T Consensus       204 t  204 (312)
T 2i99_A          204 T  204 (312)
T ss_dssp             C
T ss_pred             e
Confidence            5

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.55  E-value=0.011  Score=56.52  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=44.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ||++||- |.+|++++..|...++  +|+.||++..  .+.+|...    -.+.   .+++.+++++||+||++.
T Consensus         7 kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~--~~~~l~~~----G~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            7 KIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTAS--KAEPLTKL----GATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTT----TCEE---CSSGGGGCCTTCEEEECC
T ss_pred             cEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHc----CCeE---eCCHHHHHhcCCceeeec
Confidence            8999999 9999999999999987  9999999762  12223221    1222   245689999999999985

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.55  E-value=0.013  Score=57.03  Aligned_cols=115  Identities=16%  Similarity=0.111  Sum_probs=72.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCch----------HHHHHH-HhcccC---CCe---EEEEeCC-C
Q 016424           41 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT----------PGVTAD-ISHMDT---GAV---VRGFLGQ-P  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~~----------~g~a~D-L~~~~~---~~~---v~~~~~t-~  101 (390)
                      .|+|.|+||+|++|+.++..|. ..+.  +|+++|.+..          .....+ +.+...   ...   ++.+.+. +
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            3699999999999999999988 8775  8999987641          111111 222111   012   4444332 2


Q ss_pred             C---hhhhhC--C-CcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          102 Q---LENALT--G-MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       102 d---l~~al~--d-ADiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |   +.++++  + +|+||-++|.....  .....+.+..|+.-...+.+.+.+.... .+|++|
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~S  143 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSS  143 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEEC
Confidence            2   334565  6 99999999864321  1233456788999889999888776543 344443

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.55  E-value=0.048  Score=50.90  Aligned_cols=116  Identities=15%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCC-CCh---hhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQL---ENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t-~dl---~~al~-----  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++..... ..++..+.+. +|.   .++++     
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999886  899999987  3445556654321 1255554321 232   22222     


Q ss_pred             --CCcEEEEcCCCCCCCC----CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRKPG----MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g----~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                        .-|++|..+|.....+    .+..   ..+..|+.-...+.+.+..+   ...+.|++++
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~is  150 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGIS  150 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence              5699999998632221    2222   34556665444444433322   3456777775

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.55  E-value=0.0085  Score=54.15  Aligned_cols=78  Identities=19%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC--------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT--------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~--------  108 (390)
                      +++|.|+||+|++|..++..|+..+...+|++.|.+....  .++.+. ...++..+.+. +|   +.++++        
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~--~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH--HHHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence            4589999999999999999999887223899999986211  112222 12344444321 22   223333        


Q ss_pred             -CCcEEEEcCCCCC
Q 016424          109 -GMDLVIIPAGVPR  121 (390)
Q Consensus       109 -dADiVIi~ag~p~  121 (390)
                       +.|+||..+|...
T Consensus        80 ~~id~li~~Ag~~~   93 (250)
T 1yo6_A           80 DGLSLLINNAGVLL   93 (250)
T ss_dssp             GCCCEEEECCCCCC
T ss_pred             CCCcEEEECCcccC
Confidence             7999999998754

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.54  E-value=0.017  Score=53.27  Aligned_cols=111  Identities=22%  Similarity=0.277  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++..     .+..+.+ -+|   ..++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  8999999762  222222221     2222221 122   223343      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                       +.|+||..+|.....   ..+.   ...+..|+.-.    +...+.+.+....+.|++++
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~is  145 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTA  145 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence             799999999865321   1222   23455565433    33444444333246676665

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.53  E-value=0.026  Score=52.58  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC------------c--hHHHHHHHhcccCCCeEEEEeC-CCCh--
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV------------N--TPGVTADISHMDTGAVVRGFLG-QPQL--  103 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~------------~--~~g~a~DL~~~~~~~~v~~~~~-t~dl--  103 (390)
                      .++|.|+||+|++|..++..|+..+.  +|+++|.+            .  ......++...  ..++..+.. -+|.  
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            45889999999999999999999886  89999987            2  12222333332  234444332 1232  


Q ss_pred             -hhhhC-------CCcEEEEcCCCCCCC-CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          104 -ENALT-------GMDLVIIPAGVPRKP-GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       104 -~~al~-------dADiVIi~ag~p~k~-g~~---r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                       .++++       ..|++|..+|..... ..+   -...+..|+.-...+.+.+..+- ..+.|++++-
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence             22222       789999999875322 122   23456778777777777777664 4567777763

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=96.52  E-value=0.0072  Score=57.99  Aligned_cols=99  Identities=16%  Similarity=0.185  Sum_probs=70.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCC---CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhCC---Cc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPL---VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTG---MD  111 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~---~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~d---AD  111 (390)
                      |||.|+||+|.+|+.++..|...+.   ..+|+.+|.+.....   +.    ...++.+.+. +   ++.+++++   +|
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~---~~----~~~~~~~~~Dl~d~~~~~~~~~~~~~~d   74 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW---HE----DNPINYVQCDISDPDDSQAKLSPLTDVT   74 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC---CC----SSCCEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc---cc----cCceEEEEeecCCHHHHHHHHhcCCCCC
Confidence            6899999999999999998887761   138999998752111   11    1233333321 2   34567888   99


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP  150 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p  150 (390)
                      +||-+++...   ....+....|+.....+.+.+.+.++
T Consensus        75 ~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           75 HVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             EEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             EEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            9999998653   34566788899999999999988754

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.51  E-value=0.02  Score=51.94  Aligned_cols=116  Identities=20%  Similarity=0.215  Sum_probs=68.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh---
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL---  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al---  107 (390)
                      ++|.|+||+|++|..++..|+..+...     +|++.|.+.  ......++...  ..++..+.+. +|.   .+++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            579999999999999999888766422     799999876  23334444332  2345544321 222   2222   


Q ss_pred             ----CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          108 ----TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       108 ----~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                          .+.|+||..+|......   .+.   ...+..|+.-...+.+.+..+   ...+.++++|-
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITS  145 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence                27999999999754221   222   234555655444444443322   23566777764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.51  E-value=0.0043  Score=59.67  Aligned_cols=93  Identities=18%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC----CChhhhhC--CCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ----PQLENALT--GMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~--dADi  112 (390)
                      ++||.|+||+|.+|+.++..|...+.  ++++++.+.  .......+.... ...++.+.+.    .++.++++  ++|+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~   86 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALE-DKGAIIVYGLINEQEAMEKILKEHEIDI   86 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHH-hCCcEEEEeecCCHHHHHHHHhhCCCCE
Confidence            46899999999999999999888874  789998875  122222121111 0122332221    24567788  9999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~  149 (390)
                      ||.+++..             |+...+.+++.+.+..
T Consensus        87 Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           87 VVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             EEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             EEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            99998753             4555567777777776

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.51  E-value=0.014  Score=55.03  Aligned_cols=117  Identities=13%  Similarity=0.149  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      +.+.+.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++..... ..+..+.. -+|.   .+++      
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            446788999999999999999999886  899999987  3344444543221 12232221 1232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC----CCHH---HHHHHHHH----HHHHHHHHHHHhC-CCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKPG----MTRD---DLFNINAG----IVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g----~~r~---~l~~~N~~----ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                       ..-|++|..+|.....+    .+..   ..+..|+.    +.+.+.+.+.+.. ..+.||+++-
T Consensus       109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  173 (281)
T 4dry_A          109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS  173 (281)
T ss_dssp             HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence             35699999999743221    2322   24555544    3555555665554 3577777753

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.50  E-value=0.019  Score=53.66  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.+. +|.   .+++       
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999886  899999986  233344453322  234433221 222   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-----CPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~-----~p~a~iiv~tN  159 (390)
                      ...|+||..+|......   .+.   ...+..|+.-...+++.+...     ...+.||+++-
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS  160 (277)
T 2rhc_B           98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS  160 (277)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence            36899999999754221   222   234566766655555554433     13466777653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.50  E-value=0.012  Score=54.71  Aligned_cols=116  Identities=16%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc-CCCeEEEEeCC-CC---hhhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~-~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ...++..+.+. +|   ..++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            35788889999999999999998886  899999986  233344442111 11344443321 22   233444     


Q ss_pred             --CCcEEEEcCCCCCCC---CC----CHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 016424          109 --GMDLVIIPAGVPRKP---GM----TRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       109 --dADiVIi~ag~p~k~---g~----~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                        +.|++|..+|.....   ..    +..   ..+..|+.-.    +.+.+.+.+..  +.|++++--
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~  149 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSI  149 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecc
Confidence              899999999864321   11    222   2345555443    34444443333  667777543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.49  E-value=0.018  Score=53.12  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.+. +|   ..++++      
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45889999999999999999999886  899999986  233344454322  234433221 22   222233      


Q ss_pred             -CCcEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k--~--g~~r---~~l~~~N~~ii~~ia----~~I~~~~p~a~iiv~t  158 (390)
                       +.|++|..+|....  +  ..+.   ...+..|+.-...+.    +.+.+. ..+.|++++
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~is  150 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEe
Confidence             79999999986421  1  1222   234555655444444    444333 346666665

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.49  E-value=0.0034  Score=60.94  Aligned_cols=115  Identities=11%  Similarity=0.035  Sum_probs=70.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH---HHHHHHhccc---CCCeEEEEeCC-CC---hhhhhCC--
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TGAVVRGFLGQ-PQ---LENALTG--  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~---g~a~DL~~~~---~~~~v~~~~~t-~d---l~~al~d--  109 (390)
                      ++|.|+||+|++|+.++..|...+.  +|+++|.+...   ....++....   ....+..+.+. +|   +.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999988875  89999986411   1111111100   11234444321 22   3345554  


Q ss_pred             CcEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEec
Q 016424          110 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p--~a~iiv~t  158 (390)
                      .|+||.++|.....  .......+..|+.-...+.+.+.+...  ...+|++|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            59999999864311  112345567788888888888887653  14566554

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.48  E-value=0.025  Score=51.58  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh---C
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL---T  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al---~  108 (390)
                      ..+.++|.|+||+|++|..++..|+..+.  ++++.|.+.  ......++..     .+..... -+|   ..+.+   .
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~   83 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTS   83 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCS
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcC
Confidence            45567999999999999999999999886  899999986  2333333332     2222211 122   22222   3


Q ss_pred             CCcEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 016424          109 GMDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       109 dADiVIi~ag~p~k~------g~~r~~l~~~N~~ii~~i----a~~I~~~~p~a~iiv~tNP  160 (390)
                      ..|++|..+|.....      ...-...+..|+.-...+    .+.+.+. ..+.|++++-.
T Consensus        84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~  144 (249)
T 3f9i_A           84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSI  144 (249)
T ss_dssp             CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccH
Confidence            789999999864321      112234555565444444    4444333 45667777643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.48  E-value=0.029  Score=52.32  Aligned_cols=114  Identities=20%  Similarity=0.246  Sum_probs=67.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-----  107 (390)
                      +.+.+.|+||+|++|..++..|+..+.  ++++.|...   ......++....  .++..+.+ -+|.   .+++     
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~  102 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIE  102 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            445788889999999999999999886  888888854   233344444322  33443332 1232   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          108 --TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                        ...|++|..+|......   .+..   ..+..|+.-    .+.+.+.+.+.. .+.||+++
T Consensus       103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  164 (269)
T 4dmm_A          103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIA  164 (269)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence              27899999999754321   2222   235555544    444444444443 45666665

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.48  E-value=0.053  Score=49.95  Aligned_cols=117  Identities=16%  Similarity=0.185  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCCC-CcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-----
Q 016424           40 AGFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G-~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-----  107 (390)
                      +.++|.|+||+| ++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+... +|.   .+++     
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            356889999977 799999999999886  899999987  334444554332 2355554321 232   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN  159 (390)
                        ..-|++|..+|......   .+..   ..+..|+.-.    +.+.+.+.+....+.|++++-
T Consensus        98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence              25699999999754321   2322   3355564443    444444444445677777653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.48  E-value=0.0024  Score=60.52  Aligned_cols=78  Identities=19%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h---HHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTADISHMDTGAVVRGFLGQ----PQLENALTGMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~---~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dAD  111 (390)
                      .+++|.|+||+|++|+.++..|...+.  ++++++.+. .   ......+.... ...++.+.+.    .++.++++++|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~-~~~v~~v~~D~~d~~~l~~a~~~~d   79 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFR-SMGVTIIEGEMEEHEKMVSVLKQVD   79 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhh-cCCcEEEEecCCCHHHHHHHHcCCC
Confidence            467999999999999999999888775  788888874 1   11222221111 0122222221    24668899999


Q ss_pred             EEEEcCCCC
Q 016424          112 LVIIPAGVP  120 (390)
Q Consensus       112 iVIi~ag~p  120 (390)
                      +||.+++..
T Consensus        80 ~vi~~a~~~   88 (321)
T 3c1o_A           80 IVISALPFP   88 (321)
T ss_dssp             EEEECCCGG
T ss_pred             EEEECCCcc
Confidence            999998754

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.47  E-value=0.01  Score=54.45  Aligned_cols=117  Identities=14%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc-----CCCeEEEEeCC-CC---hhhhhCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-----TGAVVRGFLGQ-PQ---LENALTG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~-----~~~~v~~~~~t-~d---l~~al~d  109 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....     ...++..+.+. +|   +.+++++
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            45899999999999999999998886  899999876  222223332211     00234433321 23   2233333


Q ss_pred             C--------cEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 016424          110 M--------DLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (390)
Q Consensus       110 A--------DiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tN  159 (390)
                      +        |+||..+|.....   ..+.   ...+..|+.-...+.+.    +.+....+.||+++-
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  152 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS  152 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            3        9999999875431   1222   23455565444444444    433333566777654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.44  E-value=0.042  Score=50.59  Aligned_cols=115  Identities=14%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+.+. +|.   .+++       
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999886  899999986  23334444332  2344443321 232   2222       


Q ss_pred             -CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAK---CCPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~---~~p~a~iiv~tN  159 (390)
                       ...|++|..+|.....   ..+.   ...+..|+.-...+.+.+..   ....+.|++++-
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISS  146 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence             5799999999975421   1222   23455665544444444422   233566777753

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.44  E-value=0.053  Score=50.92  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-------  107 (390)
                      .+.+.|.||+|++|..++..|+..+.  +|++.|.+.  ....+.++....  .++..+.. -+|.   .+++       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999886  899999986  344455554422  34444332 1232   2222       


Q ss_pred             CCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPR--KP--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|++|..+|...  .+  ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|++++-
T Consensus       104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS  165 (283)
T 3v8b_A          104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSS  165 (283)
T ss_dssp             SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcC
Confidence            37899999999743  22  22332   345556544    444444445443 566777654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.43  E-value=0.025  Score=51.53  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      +.+++.|+||+|++|..++..|+..+.  ++++.|.+.  ......++....  .++..+.. -+|.   ++.+      
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            346889999999999999999999886  899999987  333444444332  34444332 1232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~----~I~~~~p~a~iiv~tN  159 (390)
                       ..-|+||..+|......   .+.   ...+..|+.-...+.+    .+.+. ..+.|++++-
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS  141 (247)
T 3lyl_A           80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGS  141 (247)
T ss_dssp             TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcc
Confidence             24699999999754321   222   2345556544444444    34333 3466777763

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.43  E-value=0.045  Score=51.73  Aligned_cols=115  Identities=18%  Similarity=0.232  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--------------hHHHHHHHhcccCCCeEEEEeC-CCCh--
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQL--  103 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--------------~~g~a~DL~~~~~~~~v~~~~~-t~dl--  103 (390)
                      .+.+.|.||+|++|..++..|+..+.  .++++|.+.              +.....++...  ..++..+.. -+|.  
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVRDFDA  103 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence            45788999999999999999999886  899999861              12233334332  234444332 1232  


Q ss_pred             -hhhh-------CCCcEEEEcCCCCCCC----CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          104 -ENAL-------TGMDLVIIPAGVPRKP----GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       104 -~~al-------~dADiVIi~ag~p~k~----g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       .+++       ...|++|..+|.....    ..+..   ..+..|+.    +.+.+.+.+.+....+.|++++-
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS  178 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS  178 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             2222       3789999999864322    12332   34555654    44444555555455677777763

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.42  E-value=0.0076  Score=57.49  Aligned_cols=77  Identities=22%  Similarity=0.266  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+..++.|+|| |++|..++..|...+ +.+|.++|.+.  +...+.++........+.... ..++.++++++|+||.+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G-~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~-~~~l~~~l~~~DiVIna  201 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHG-VQKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIEDVIAAADGVVNA  201 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC-STTHHHHHHHSSEEEEC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC-HHHHHHHHhcCCEEEEC
Confidence            45679999999 999999999998876 45799999986  344555555332223455432 24777889999999997


Q ss_pred             CC
Q 016424          117 AG  118 (390)
Q Consensus       117 ag  118 (390)
                      ..
T Consensus       202 Tp  203 (283)
T 3jyo_A          202 TP  203 (283)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.42  E-value=0.014  Score=53.30  Aligned_cols=104  Identities=16%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HH-HHHHHhcccCCCeEEEEeCCCChhhhh----CCCcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g-~a~DL~~~~~~~~v~~~~~t~dl~~al----~dADiVI  114 (390)
                      ++|.|+||+|++|..++..|+..+.  +|++.|.+..  .. ...|+.+..            +..+++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~------------~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQ------------AIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHH------------HHHHHHHHhCCCCCEEE
Confidence            4799999999999999999998886  8999998761  11 122333211            222333    3459999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP  160 (390)
                      ..+|..... ..-...+..|..-...+.+.+..+   ...+.||++|--
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           68 LCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             ECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             ECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            999976422 224455666655555555544432   234667766543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.42  E-value=0.049  Score=45.22  Aligned_cols=70  Identities=11%  Similarity=0.102  Sum_probs=45.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCCh---hh-hhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl---~~-al~dADiVIi~  116 (390)
                      +++|.|+|+ |.+|+.++..|...+.  +++++|.++..  ..++.+..  ..+.. ...+|.   .+ .+.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~--~~~~~-gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEG--FDAVI-ADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEEE-CCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC--CcEEE-CCCCCHHHHHhCCcccCCEEEEe
Confidence            568999999 9999999999998886  89999998621  22222211  12111 112232   11 25689999998


Q ss_pred             CC
Q 016424          117 AG  118 (390)
Q Consensus       117 ag  118 (390)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            74

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.40  E-value=0.024  Score=52.60  Aligned_cols=116  Identities=16%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC-Cc--hHHHHHHHhcccCCCeEEEEeCC-CC-------hhhhh--
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLGQ-PQ-------LENAL--  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di-~~--~~g~a~DL~~~~~~~~v~~~~~t-~d-------l~~al--  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|. +.  ......++.... ..++..+.+. +|       ..+++  
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            35789999999999999999999886  8999999 65  233444443221 1233333221 22       12222  


Q ss_pred             -----CCCcEEEEcCCCCCCCC---CCH--------------HHHHHHHHHHHHHHHHHHHHhC--CC------cEEEEe
Q 016424          108 -----TGMDLVIIPAGVPRKPG---MTR--------------DDLFNINAGIVRTLCEGIAKCC--PN------ATVNLI  157 (390)
Q Consensus       108 -----~dADiVIi~ag~p~k~g---~~r--------------~~l~~~N~~ii~~ia~~I~~~~--p~------a~iiv~  157 (390)
                           ...|++|..+|......   .+.              ...+..|+.-...+.+.+..+-  ..      +.||++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 27899999998643211   111              2345667666666666655542  22      667777


Q ss_pred             cC
Q 016424          158 SN  159 (390)
Q Consensus       158 tN  159 (390)
                      +-
T Consensus       168 sS  169 (276)
T 1mxh_A          168 CD  169 (276)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.40  E-value=0.019  Score=52.21  Aligned_cols=75  Identities=24%  Similarity=0.265  Sum_probs=51.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC-c--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~-~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+ .  ......++...  ..++..+.+. +|   +.++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  89999997 4  33344444432  2344444321 22   233344     


Q ss_pred             --CCcEEEEcCCC
Q 016424          109 --GMDLVIIPAGV  119 (390)
Q Consensus       109 --dADiVIi~ag~  119 (390)
                        +.|+||..+|.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence              79999999986

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.40  E-value=0.0029  Score=57.26  Aligned_cols=69  Identities=19%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhh-hhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LEN-ALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~-al~dADiVIi~  116 (390)
                      |||.|+|+ |.+|+.++..|...+.  +++++|.++..  +.++.+.. ...+  +.+ .++   +.+ .+++||+||++
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~-~~~~--i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKL-KATI--IHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHS-SSEE--EESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHc-CCeE--EEcCCCCHHHHHhcCcccCCEEEEe
Confidence            68999999 9999999999988876  89999998621  22222211 1111  112 122   333 37899999998


Q ss_pred             CC
Q 016424          117 AG  118 (390)
Q Consensus       117 ag  118 (390)
                      .+
T Consensus        73 ~~   74 (218)
T 3l4b_C           73 TP   74 (218)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=96.40  E-value=0.0097  Score=63.12  Aligned_cols=115  Identities=18%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC--CCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~--dAD  111 (390)
                      ++++|.|+||+|++|+.++..|...+.  +|+++|...  ......++.... ...++.+.+. +   ++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            457999999999999999999988875  899999765  222222232111 1122222221 2   3345666  899


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +||-+||.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            999999864311  0123456778888888888888877544 344443

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.40  E-value=0.0046  Score=57.86  Aligned_cols=74  Identities=22%  Similarity=0.344  Sum_probs=50.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|+|+ |++|+.++..|+..+ +.+|.|+|.+.                     +...+..+.+.....+++.+...
T Consensus        29 ~~VlvvG~-GglG~~va~~La~~G-vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  106 (251)
T 1zud_1           29 SQVLIIGL-GGLGTPAALYLAGAG-VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR  106 (251)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTT-CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CcEEEEcc-CHHHHHHHHHHHHcC-CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            39999999 999999999999888 46899999863                     11223344444333456654311


Q ss_pred             ---CChhhhhCCCcEEEEcC
Q 016424          101 ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 ---~dl~~al~dADiVIi~a  117 (390)
                         +++.+.++++|+||.+.
T Consensus       107 ~~~~~~~~~~~~~DvVi~~~  126 (251)
T 1zud_1          107 LTGEALKDAVARADVVLDCT  126 (251)
T ss_dssp             CCHHHHHHHHHHCSEEEECC
T ss_pred             CCHHHHHHHHhcCCEEEECC
Confidence               13445678899999875

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.39  E-value=0.029  Score=52.29  Aligned_cols=111  Identities=22%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.++  ......++..     .+..+.. -+|   ..++++      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR-----GAVHHVVDLTNEVSVRALIDFTIDTF   83 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----CeEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999886  899999987  3444444421     1121111 122   222333      


Q ss_pred             -CCcEEEEcCCCCCC-C----CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRK-P----GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k-~----g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tN  159 (390)
                       ..|++|..+|.... +    ..+.   ...+..|+.-...+++.+    .+ ...+.|++++-
T Consensus        84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS  146 (271)
T 3tzq_B           84 GRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLIS-AGGGAIVNISS  146 (271)
T ss_dssp             SCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEEEEECC
Confidence             78999999997522 2    1232   234566665554444444    43 34567777753

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.39  E-value=0.0083  Score=54.41  Aligned_cols=113  Identities=18%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCC---hhhhhC---CCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENALT---GMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~d---l~~al~---dAD  111 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++.    ...+.. ..-+|   +.++++   ..|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~-~D~~~~~~~~~~~~~~~~id   78 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECP----GIEPVC-VDLGDWDATEKALGGIGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEE-CCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcc----CCCcEE-ecCCCHHHHHHHHHHcCCCC
Confidence            356899999999999999999998886  8999998762  22222211    111111 11122   333444   479


Q ss_pred             EEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 016424          112 LVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (390)
Q Consensus       112 iVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tN  159 (390)
                      +||..+|.....   ..+.   ...+..|+.-...+.+.+    .+....+.++++|-
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           79 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            999999865421   1222   234556665544444444    33343566777654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.39  E-value=0.0082  Score=55.35  Aligned_cols=115  Identities=22%  Similarity=0.276  Sum_probs=72.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC-Cc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di-~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  ++++.|. +.  ......++...  ..++..+.+. +|   +.++++    
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998886  8899998 43  23333444432  2334433321 22   233343    


Q ss_pred             ---CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          109 ---GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       109 ---dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                         +.|+||..+|.....   ..+.   ...+..|+.-...+.+.+.++. ..+.+|+++
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s  155 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  155 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEc
Confidence               789999999875321   1222   2456677777777777666653 225666665

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.38  E-value=0.041  Score=50.99  Aligned_cols=116  Identities=12%  Similarity=0.077  Sum_probs=70.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l  107 (390)
                      .+.+.|.||+|++|..++..|+..+.  +|++.|.+.  ......++.......++..+.. -+|.   .+.       +
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45889999999999999999999886  899999986  3444455544221223444332 1232   111       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      -.-|++|..+|.....   ..+..   ..+..|+.-...+++.+..+   ...+.|++++
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~is  145 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVN  145 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEC
Confidence            3679999999974321   22332   34566765555555554433   2356677665

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.38  E-value=0.0047  Score=57.89  Aligned_cols=77  Identities=25%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h---H-HHHHHHhcccCCCeEEEEeCC----CChhhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---P-GVTADISHMDTGAVVRGFLGQ----PQLENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~---~-g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dAD  111 (390)
                      ++||.|+||+|++|+.++..|...+.  +++.++.+. .   . ..+..+.... ...++.+.+.    .++.++++++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~~~d   78 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQ-SLGVILLEGDINDHETLVKAIKQVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHH-hCCCEEEEeCCCCHHHHHHHHhCCC
Confidence            57899999999999999998887774  788888874 0   1 1111121110 0112222221    24567899999


Q ss_pred             EEEEcCCCC
Q 016424          112 LVIIPAGVP  120 (390)
Q Consensus       112 iVIi~ag~p  120 (390)
                      +||.++|..
T Consensus        79 ~vi~~a~~~   87 (307)
T 2gas_A           79 IVICAAGRL   87 (307)
T ss_dssp             EEEECSSSS
T ss_pred             EEEECCccc
Confidence            999998764

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=96.37  E-value=0.011  Score=62.30  Aligned_cols=112  Identities=14%  Similarity=0.077  Sum_probs=73.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC----hhhhhCCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d----l~~al~dADi  112 (390)
                      .++++|.|+||+|++|+.++..|... +.  +|+++|.+....  .++..   ...++.+.+. +|    +.++++++|+
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~  385 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDV  385 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCE
Confidence            35679999999999999999988876 54  899999875210  11111   2344444332 22    3346779999


Q ss_pred             EEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          113 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       113 VIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ||-++|....+.  ....+.+..|+.-...+.+.+.+..  ..++++|-
T Consensus       386 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          386 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            999988653211  2334566778888888888888765  55666653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.37  E-value=0.023  Score=52.81  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+..  .....++.     .++..+.+ -+|   ..++++      
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  8999999862  22222221     23333322 122   222233      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCc
Q 016424          109 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd  162 (390)
                       ..|++|..+|.....   ..+.   ...+..|+.-...+.+.+..+- ..+.|++++--..
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence             469999999875421   1222   2346677776666666665553 2467777765443

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.37  E-value=0.002  Score=60.53  Aligned_cols=109  Identities=21%  Similarity=0.124  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +++||.|+||+|.+|+.++..|...+.  +|+.+|.+...  +....+.+......++.      ...++.++|+||-++
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            367999999999999999999988876  88999886521  11111111111122222      134566999999998


Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.....  .....+.+. |+.-...+.+.+.+.... .++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~S  118 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGS  118 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEec
Confidence            864310  011122344 888899999999888744 344443

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.36  E-value=0.021  Score=51.66  Aligned_cols=114  Identities=22%  Similarity=0.318  Sum_probs=66.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEE-EeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L-~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      ++|.|+||+|++|..++..|+..+.  ++++ ++.+.  ......++...  ..++..+.+. +|   +.++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999998886  7777 46665  23333344322  1244443321 22   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                       +.|+||..+|......   .+.   ...+..|+.-...+.+.+.++   ...+.++++|-
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence             7899999998764321   222   234556655544444444332   23566777653

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.35  E-value=0.025  Score=52.16  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++.     .++..+.. -+|   ..++++      
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999886  899999986  222223331     23333221 122   222333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ..|++|..+|.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++-
T Consensus        78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence             799999999875421   1222   2345555433    345556665543 466777653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.35  E-value=0.025  Score=54.92  Aligned_cols=105  Identities=16%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-----CChhhhhCCCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-----~dl~~al~dADiVIi  115 (390)
                      +++|.|+||+|++|+.++..|...+.  +|++++.+.....+.++...   ..++.+.+.     .++.++++++|+||.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            56899999999999999998888775  78888887632222334321   233333322     135678999999998


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      .++...   .      ..|... +.+++.+.+...-..+|.+|-.
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCSEEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCccEEEEeCCc
Confidence            765321   1      124433 6677777666512345556533

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.34  E-value=0.042  Score=49.88  Aligned_cols=117  Identities=15%  Similarity=0.190  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC---CCh---hh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ---PQL---EN------  105 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t---~dl---~~------  105 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ...+..+...   +|.   .+      
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHHHH
Confidence            346889999999999999999999886  899999987  333444444332 1222222111   121   11      


Q ss_pred             -hhCCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 016424          106 -ALTGMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGIAK---CCPNATVNLISN  159 (390)
Q Consensus       106 -al~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I~~---~~p~a~iiv~tN  159 (390)
                       .+...|++|..+|...  .+  ..+..   ..+..|+.-...+.+.+..   ....+.|++++-
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS  154 (247)
T 3i1j_A           90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSS  154 (247)
T ss_dssp             HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence             2237899999998642  22  12222   3455565544444444432   234567777653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.34  E-value=0.051  Score=51.20  Aligned_cols=115  Identities=12%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHH-HhcccCCCeEEEEeCC-CCh---hhhh-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD-ISHMDTGAVVRGFLGQ-PQL---ENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~D-L~~~~~~~~v~~~~~t-~dl---~~al-----  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....+ +...  ..++..+.+. +|.   ++++     
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999886  8999999862  222222 3222  2344444321 232   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCC----CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 --TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~g----~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                        ...|++|..+|.....+    .+.   ...+..|+.-...+.+.+..+- ..+.||+++
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence              26899999988643221    232   3456778777777777776653 356677665

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.34  E-value=0.021  Score=53.33  Aligned_cols=78  Identities=14%  Similarity=0.107  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----hh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----EN-------  105 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----~~-------  105 (390)
                      +.++|.|+||+|+||..++..|+..+.  +|++.|.+.  ......++.... ..++..+.. -+|.    .+       
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            345788899999999999999998886  899999987  344455565433 234554432 1232    11       


Q ss_pred             hhCCCcEEEEcCCCC
Q 016424          106 ALTGMDLVIIPAGVP  120 (390)
Q Consensus       106 al~dADiVIi~ag~p  120 (390)
                      .+...|++|..||+.
T Consensus        88 ~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           88 HFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hCCCCCEEEECCccc
Confidence            134789999999875

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.34  E-value=0.075  Score=49.76  Aligned_cols=115  Identities=15%  Similarity=0.245  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      .+.+.|.||+|++|..++..|+..+.  ++++.|...   ......++...  ..++..+... +|   ..++++     
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGL--GARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHT--TCCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999886  899999744   23344455432  2344443321 22   223333     


Q ss_pred             --CCcEEEEcCCCC---CCC--CCCHHH---HHHHHH----HHHHHHHHHHHHhCC--CcEEEEecC
Q 016424          109 --GMDLVIIPAGVP---RKP--GMTRDD---LFNINA----GIVRTLCEGIAKCCP--NATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p---~k~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p--~a~iiv~tN  159 (390)
                        ..|++|..+|..   ..+  ..+..+   .+..|+    .+.+.+.+.+.+...  .+.||+++-
T Consensus       105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS  171 (280)
T 4da9_A          105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITS  171 (280)
T ss_dssp             HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_pred             cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcc
Confidence              789999999972   222  123222   233444    445555666655542  567777764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.34  E-value=0.016  Score=49.21  Aligned_cols=102  Identities=10%  Similarity=0.065  Sum_probs=60.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhh-hCCCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENA-LTGMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~a-l~dADiVIi  115 (390)
                      ..||.|+|+ |.+|+.++..|...+.  +++++|.+.. .....+.+.. ...+....|. +|   +.++ +.+||.||+
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~-~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPE-DDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCH-HHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCCh-HHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence            358999999 9999999999988776  8999999741 1111121110 0112222221 22   3344 899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCc
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVN  162 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv-~tNPvd  162 (390)
                      +.+..           ..|.    .++..+.+.+|+..++. +.||..
T Consensus        78 ~~~~d-----------~~n~----~~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           78 LSDND-----------ADNA----FVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             CSSCH-----------HHHH----HHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             ecCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHH
Confidence            86321           2343    23444555677775555 456653

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.34  E-value=0.041  Score=51.50  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++...   .++..+.+ -+|   ..+++      
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAY---GDCQAIPADLSSEAGARRLAQALGEL  102 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTS---SCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CceEEEEeeCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999886  899999986  23344445321   13333221 122   22222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHHhCC---CcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCP---NATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii----~~ia~~I~~~~p---~a~iiv~tN  159 (390)
                       ...|++|..+|.....   ..+.   ...+..|+.-.    +.+.+.+.+...   .+.||+++-
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence             3789999999865321   1221   23455565444    555555555442   166777653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.33  E-value=0.035  Score=51.20  Aligned_cols=115  Identities=19%  Similarity=0.179  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      +.+++.|.||+|++|..++..|+..+.  ++++.|.+.  ......++.+..  .++..+.. -+|.   .+.+      
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            345888999999999999999998886  899999986  344444554432  34444332 1232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCC--CCCHH---HHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKP--GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~--g~~r~---~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tN  159 (390)
                       ...|++|..+|.....  ..+..   ..+..|+.-...+.+.    +.+ ...+.|++++-
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~~~g~iv~isS  147 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQK-AGGGAILNISS  147 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCcEEEEEcC
Confidence             2789999999864322  23322   2355565444444444    433 34567777753

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.33  E-value=0.02  Score=53.57  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  +...+.++....  .++..+.. -+|.   .++       +
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35788899999999999999999886  899999986  344455554432  33443322 1222   122       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...|++|..+|......   .+..   ..+..|+.-.    +.+.+.+.+. ..+.||+++
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~is  139 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIG  139 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEc
Confidence            37899999999753221   2322   3345554443    4444444443 356677765

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.33  E-value=0.017  Score=53.40  Aligned_cols=112  Identities=17%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~al  107 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.++  ......++.     .++..+.. -+|..          +.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            45889999999999999999999886  899999986  223333331     23333221 12321          223


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                      ...|++|..+|......   .+.   ...+..|+.-...+.+.+..+- ..+.|++++-
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            47899999999764321   232   2346677776666777766543 3567777754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.33  E-value=0.081  Score=49.27  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC-------------c--hHHHHHHHhcccCCCeEEEEeC-CCCh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTGAVVRGFLG-QPQL  103 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~-------------~--~~g~a~DL~~~~~~~~v~~~~~-t~dl  103 (390)
                      +.+.+.|+||+|++|..++..|+..+.  ++++.|++             .  ....+.++...  ..++..+.. -+|.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence            345788999999999999999999886  89999983             2  22333344432  234443322 1232


Q ss_pred             ---hhhh-------CCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          104 ---ENAL-------TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       104 ---~~al-------~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                         ++.+       ...|++|..+|......   .+..   ..+..|+    .+.+.+.+.+.+....+.||+++-
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS  165 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence               2222       37899999999754221   2322   2344554    345555555666555677777763

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.32  E-value=0.016  Score=55.01  Aligned_cols=115  Identities=19%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---h-------hh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---E-------NA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~-------~a  106 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.+ -+|.   +       +.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            345788889999999999999999886  899999987  344555665432 134544432 1232   1       12


Q ss_pred             hCCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +...|++|..+|.... +  ..+..   ..+..|+.-.    +.+.+.+.+.. .+.||+++
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~is  177 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTS  177 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEe
Confidence            3367999999986432 2  22332   3355565444    34444444544 45566665

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.32  E-value=0.0064  Score=57.01  Aligned_cols=77  Identities=19%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch----HHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~----~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADi  112 (390)
                      ++||.|+||+|++|+.++..|...+.  +++.++.+..    ...+..+.... ...++.+.+.    .++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHcCCCE
Confidence            57899999999999999999988874  7888888741    12222222111 1123333221    245678899999


Q ss_pred             EEEcCCCC
Q 016424          113 VIIPAGVP  120 (390)
Q Consensus       113 VIi~ag~p  120 (390)
                      ||.+++..
T Consensus        81 vi~~a~~~   88 (308)
T 1qyc_A           81 VISTVGSL   88 (308)
T ss_dssp             EEECCCGG
T ss_pred             EEECCcch
Confidence            99998754

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.32  E-value=0.0066  Score=58.77  Aligned_cols=73  Identities=16%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..+|+|||+ |.+|...+..+.....+.+|.+||++.+...+.++.+.. ...+..   . ++++++++||+||.+...
T Consensus       121 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~---~-~~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          121 SSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM---A-APADIAAQADIVVTATRS  193 (313)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE---C-CHHHHHHHCSEEEECCCC
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE---e-CHHHHHhhCCEEEEccCC
Confidence            469999999 999999988777643478999999985455666665322 234443   3 678999999999997543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.31  E-value=0.024  Score=54.32  Aligned_cols=114  Identities=16%  Similarity=0.198  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC----------c--hHHHHHHHhcccCCCeEEEEeCC-CCh---h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV----------N--TPGVTADISHMDTGAVVRGFLGQ-PQL---E  104 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~----------~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~  104 (390)
                      .+.+.|+||+|++|..++..|+..+.  ++++.|.+          .  ......++....  .++..+.+. +|.   .
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~  102 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQAA  102 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHH
Confidence            45788889999999999999999886  89999986          2  334444554332  344443321 232   2


Q ss_pred             hhhC-------CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHH----HHHHHhC-----CCcEEEEec
Q 016424          105 NALT-------GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLC----EGIAKCC-----PNATVNLIS  158 (390)
Q Consensus       105 ~al~-------dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia----~~I~~~~-----p~a~iiv~t  158 (390)
                      +.++       ..|++|..+|.....   ..+..   ..+..|+.-...+.    +.+.+..     +.+.||+++
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~is  178 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTS  178 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEc
Confidence            2222       789999999975432   12322   34556655433333    3333221     136777775

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.31  E-value=0.018  Score=48.30  Aligned_cols=95  Identities=12%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhh-hhCCCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LEN-ALTGMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~-al~dADiVIi  115 (390)
                      ..+|.|+|+ |.+|+.++..|...+.  +++++|.++..  +..+.+..  ..+  +.|. ++   +.+ .+.+||+||+
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g--~~~--i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERG--VRA--VLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEE--EESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcC--CCE--EECCCCCHHHHHhcCcccCCEEEE
Confidence            358999999 9999999999998886  89999998621  22232211  122  2221 22   111 3578999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +.+..           ..|..    ++..+.+.+|+..++.-.|
T Consensus        78 ~~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           78 TIPNG-----------YEAGE----IVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             CCSCH-----------HHHHH----HHHHHHHHCSSSEEEEEES
T ss_pred             ECCCh-----------HHHHH----HHHHHHHHCCCCeEEEEEC
Confidence            86322           23333    3445666788887665543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.29  E-value=0.078  Score=49.29  Aligned_cols=115  Identities=21%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC-------------c--hHHHHHHHhcccCCCeEEEEeC-CCCh-
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTGAVVRGFLG-QPQL-  103 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~-------------~--~~g~a~DL~~~~~~~~v~~~~~-t~dl-  103 (390)
                      .+++.|+||+|++|..++..|+..+.  ++++.|++             .  ......++...  ..++..+.. -+|. 
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTRDFD   86 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            45789999999999999999999887  89999983             2  22233333332  234444332 1232 


Q ss_pred             --hhh-------hCCCcEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          104 --ENA-------LTGMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       104 --~~a-------l~dADiVIi~ag~p~k~---g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                        .+.       +...|++|..+|.....   ..+..   ..+..|+    .+.+.+.+.+.+....+.||+++-
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  161 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISS  161 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              112       23689999999975432   22332   2345554    355566666766666677887763

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.29  E-value=0.038  Score=51.84  Aligned_cols=112  Identities=17%  Similarity=0.125  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++.     .++..+.. -+|.   .++       +
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45788889999999999999999886  899999986  233333441     12222221 1232   122       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      ...|++|..+|.....   ..+..   ..+..|+.-...+.+.+..+   ...+.||+++-
T Consensus       102 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS  162 (277)
T 3gvc_A          102 GGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSS  162 (277)
T ss_dssp             SSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            3789999999875321   22322   34556665544444443322   34567777753

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.28  E-value=0.022  Score=53.00  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      .+++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++     ..++..+.+ -+|   ..++++     
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLAR   76 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence            346788999999999999999998886  899999986  22222222     123333322 122   222232     


Q ss_pred             --CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~---g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                        +.|+||..+|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|+++|-
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS  138 (281)
T 3m1a_A           77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISS  138 (281)
T ss_dssp             HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence              789999999864321   22322   345666655    666666665554 455666653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.27  E-value=0.052  Score=50.00  Aligned_cols=118  Identities=10%  Similarity=0.051  Sum_probs=72.9

Q ss_pred             CCCEEEEEcCCCC--cHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-----
Q 016424           40 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~--vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-----  107 (390)
                      +.+++.|+||+|+  +|..++..|+..+.  +|++.|.++ ......++.......++..+... +|   .++.+     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            3468999999865  99999999999886  899999876 33333444332211233333221 22   22222     


Q ss_pred             --CCCcEEEEcCCCCCC-----C--CCCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPRK-----P--GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~k-----~--g~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                        ...|++|..+|....     +  ..+..   ..+..|+.-...+.+.+..+- +.+.|++++-
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence              267999999987542     1  12322   345667776777777776654 4577777763

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.27  E-value=0.028  Score=51.78  Aligned_cols=117  Identities=15%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeC-CCCh---hhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLG-QPQL---ENA------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~-t~dl---~~a------  106 (390)
                      +.+++.|.||+|++|..++..|+..+.  +|++.|.+.  ......++...... .++..+.. -+|.   .++      
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            345788999999999999999998886  899999987  34444445432111 23333322 1232   122      


Q ss_pred             -hCCCcEEEEcCCCCCCC--CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          107 -LTGMDLVIIPAGVPRKP--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       107 -l~dADiVIi~ag~p~k~--g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       +...|++|..+|.....  ..+.   ...+..|+.-    .+.+.+.+.+. ..+.|++++-
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  145 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVAS  145 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEcc
Confidence             23689999999974322  2222   2334555443    44444444443 3566777654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.27  E-value=0.03  Score=52.63  Aligned_cols=118  Identities=12%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc---CCCeEEEEeCC-CC---hhhhhC---
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLGQ-PQ---LENALT---  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~---~~~~v~~~~~t-~d---l~~al~---  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....   ...++..+.+. +|   +.++++   
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            46899999999999999999998886  899999986  333444554311   12345554321 22   222333   


Q ss_pred             ----CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424          109 ----GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (390)
Q Consensus       109 ----dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP  160 (390)
                          ..|+||..+|.....   ..+.   ...+..|+.-...+.+.+...   ...+.+++++-.
T Consensus        96 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  160 (303)
T 1yxm_A           96 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  160 (303)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence                589999999864321   1222   234566766555555554432   124667766543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.27  E-value=0.0045  Score=57.08  Aligned_cols=111  Identities=19%  Similarity=0.310  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      +.+++.|.||+|++|..++..|+..+.  ++++.|.++  ......++...     ...+.. -+|   .++++      
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~d~~~v~~~~~~~~~~   80 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDN-----GKGMALNVTNPESIEAVLKAITDE   80 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc-----ceEEEEeCCCHHHHHHHHHHHHHH
Confidence            345788889999999999999999886  899999986  23333344321     111111 122   22223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          108 -TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                       -..|++|..+|......   .+..   ..+..|+.-.    +.+.+.+.+. ..+.|++++
T Consensus        81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~is  141 (248)
T 3op4_A           81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVG  141 (248)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEc
Confidence             37899999999754321   2222   3455565443    4444444443 346677665

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.27  E-value=0.0042  Score=60.68  Aligned_cols=62  Identities=16%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+.....           .+..   ..++.+.+++||+|+++.
T Consensus       162 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-----------g~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          162 FSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-----------NYTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-----------CSEE---ESCHHHHHHTCSEEEECS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-----------Ccee---cCCHHHHHhcCCEEEEec
Confidence            34579999999 9999999999988776  8999998762110           1122   246788899999999986

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.26  E-value=0.0013  Score=61.92  Aligned_cols=64  Identities=11%  Similarity=0.154  Sum_probs=37.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEE-EEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL-~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +|||+|||+ |.+|..++..|... .  ++ .+||.+...  +..+.... ..   .   ++++.+++++||+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~--~~~~~~~~-g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDR--ARNLAEVY-GG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHH--HHHHHHHT-CC---C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHH--HHHHHHHc-CC---c---cCCHHHHHhcCCEEEEeC
Confidence            369999999 99999999877665 3  77 589987621  11222111 11   1   235567789999999986

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.26  E-value=0.046  Score=49.77  Aligned_cols=110  Identities=13%  Similarity=0.114  Sum_probs=65.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~  108 (390)
                      +++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++..     .+..+.. -+|   .++++       .
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999886  899999986  2333344421     2333321 122   22222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      ..|++|..+|.....   ..+..   ..+..|+.-...+++.+...-  ..+.|++++
T Consensus        77 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~is  134 (235)
T 3l6e_A           77 LPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVL  134 (235)
T ss_dssp             SCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            679999999874321   22322   345667665555555544331  234666664

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.25  E-value=0.0073  Score=55.47  Aligned_cols=110  Identities=18%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .+++.|+||+|++|..++..|+..+.  ++++.|.+..  .....++.       +..+.. -+|   ..++++      
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~~~~   75 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVG-------AHPVVMDVADPASVERGFAEALAHL   75 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTT-------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-------CEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  8999998752  22222221       122111 122   222232      


Q ss_pred             -CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                       ..|++|..+|......   .+.   ...+..|+.-...+++.+..+   ...+.|++++-
T Consensus        76 g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence             4799999999754221   222   234566766555555555443   23466777763

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.25  E-value=0.0056  Score=57.76  Aligned_cols=99  Identities=13%  Similarity=0.120  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~ag  118 (390)
                      +|||.|+||+|.+|+.++..|...+.  ++++++.+..    .|+.+            ..++.++++  ++|+||-+++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d------------~~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLD------------SRAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTC------------HHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccC------------HHHHHHHHHhcCCCEEEEcCe
Confidence            46999999999999999999988775  7777775420    12211            123456677  8999999998


Q ss_pred             CCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~---g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .....   ..+..+.+..|+.....+.+.+.+.... .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  106 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLG  106 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc
Confidence            65311   1233456778998889999988876533 455554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.25  E-value=0.037  Score=51.77  Aligned_cols=115  Identities=12%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      ++++.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++....  .++..+... +|.   .+++       
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999886  899999986  344455554432  344444321 232   1222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHH-----hCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAK-----CCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~-----~~p~a~iiv~tN  159 (390)
                      ...|++|..+|......   .+.   ...+..|+.-...+++.+..     ....+.||+++-
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS  162 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAS  162 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECC
Confidence            36799999998754221   222   23455676555555555433     123566777753

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.25  E-value=0.006  Score=59.44  Aligned_cols=67  Identities=24%  Similarity=0.344  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+.....+.++     .  ++.    .++.+.+++||+|+++..
T Consensus       148 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~-----g--~~~----~~l~~~l~~aDvVil~vp  213 (334)
T 2dbq_A          148 VYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL-----N--AEF----KPLEDLLRESDFVVLAVP  213 (334)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH-----C--CEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc-----C--ccc----CCHHHHHhhCCEEEECCC
Confidence            44679999999 9999999999988776  89999998633222221     1  121    267788999999999864


Q ss_pred             C
Q 016424          119 V  119 (390)
Q Consensus       119 ~  119 (390)
                      .
T Consensus       214 ~  214 (334)
T 2dbq_A          214 L  214 (334)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.25  E-value=0.017  Score=54.09  Aligned_cols=114  Identities=11%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.. -+|   ..++++      
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45788899999999999999999886  899999986  344455554422  23333321 122   222233      


Q ss_pred             -CCcEEEEcCCCCCCCC---CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g---~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ..|++|..+|......   .+..   ..+..|+.-    .+...+.+.+.. .+.||+++-
T Consensus       102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS  162 (271)
T 4ibo_A          102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGS  162 (271)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             7899999999753221   2332   235556544    344445444443 466776653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.23  E-value=0.0046  Score=58.39  Aligned_cols=71  Identities=11%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +.+||+|||+ |++|..++..|...+.  +|.++|.+..  .+.++.+..   .++.   .+++.++++++|+||++...
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~--~~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKE--KAIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHH--HHHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHH--HHHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCCC
Confidence            4579999999 9999999999888775  8999998752  223343321   2333   23677889999999998754


Q ss_pred             CC
Q 016424          120 PR  121 (390)
Q Consensus       120 p~  121 (390)
                      +.
T Consensus       197 ~~  198 (275)
T 2hk9_A          197 GL  198 (275)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.23  E-value=0.018  Score=52.99  Aligned_cols=112  Identities=7%  Similarity=0.021  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhC-------CCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALT-------GMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-------dADiV  113 (390)
                      +++.|+||+|++|..++..|+..+.  +|++.|.+.. .....++....  .++..+ ...+..++++       ..|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4688899999999999999999886  8999998762 11222243221  122221 2334444443       78999


Q ss_pred             EEcCCCC-C-CC--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          114 IIPAGVP-R-KP--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       114 Ii~ag~p-~-k~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |..+|.. . .+  ..+..   ..+..|+.-    .+.+.+.+.+.. .+.||+++-
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  132 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITS  132 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence            9999975 3 22  12222   345556543    344444444433 466777653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.22  E-value=0.042  Score=51.32  Aligned_cols=114  Identities=20%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCC-CCh---hhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQ-PQL---ENA-------  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a-------  106 (390)
                      .+++.|.||+|++|..++..|+..+.  ++++.|.+..   .....++....  .++..+... +|.   .++       
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45889999999999999999999886  8999998762   22333443322  234333221 221   112       


Q ss_pred             hCCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t  158 (390)
                      +...|++|..+|......   .+.   ...+..|+.-...+.+.+..+ ...+.||+++
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            236899999999754221   222   345677877777777776665 2456777775

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.20  E-value=0.016  Score=56.71  Aligned_cols=90  Identities=16%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  +|..||.+....           .....   ..++.+.+++||+|++...
T Consensus       169 l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----------~~~~~---~~sl~ell~~aDvVil~vP  231 (340)
T 4dgs_A          169 PKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG-----------VDWIA---HQSPVDLARDSDVLAVCVA  231 (340)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT-----------SCCEE---CSSHHHHHHTCSEEEECC-
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc-----------cCcee---cCCHHHHHhcCCEEEEeCC
Confidence            44679999999 9999999999987776  899999875220           01121   2478899999999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..  +         .+..++.  .+.+....|++++|+++
T Consensus       232 ~t--~---------~t~~li~--~~~l~~mk~gailIN~a  258 (340)
T 4dgs_A          232 AS--A---------ATQNIVD--ASLLQALGPEGIVVNVA  258 (340)
T ss_dssp             --------------------C--HHHHHHTTTTCEEEECS
T ss_pred             CC--H---------HHHHHhh--HHHHhcCCCCCEEEECC
Confidence            11  0         1111110  12334456899999986

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.20  E-value=0.018  Score=53.05  Aligned_cols=110  Identities=16%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-HHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+... ....++.      . ..+.+ -+|   .++++       .
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~------~-~~~~~D~~~~~~~~~~~~~~~~~~g   76 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIG------G-AFFQVDLEDERERVRFVEEAAYALG   76 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHT------C-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhh------C-CEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999886  89999998632 2222332      1 11111 122   22222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      ..|++|..+|.....   ..+.   ...+..|+.-...+.+.+..+   ...+.|++++-
T Consensus        77 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS  136 (256)
T 2d1y_A           77 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS  136 (256)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            689999999865321   1222   234566665555555444332   23467777753

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.20  E-value=0.058  Score=50.09  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.+ -+|.   .+++       
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45889999999999999999999886  899999986  233344441111 123333322 1232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      ...|++|..+|......   .+.   ...+..|+.-...+++.+..+   ...+.||+++-
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  158 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  158 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            37899999999754221   222   234556655444444443322   23456666653

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.20  E-value=0.047  Score=50.17  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+.+. +|   +.+++      
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998886  899999876  23333444332  2234443321 22   22222      


Q ss_pred             --CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tN  159 (390)
                        ...|+||..+|.....   ..+.   ...+..|+.-...+.+.+    .+.. .+.|++++-
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS  151 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSS  151 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              5789999999864321   1222   234556665555554444    4443 456666654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.20  E-value=0.0064  Score=56.41  Aligned_cols=111  Identities=17%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++..     .+..+.+ -+|   ..++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  899999986  2223333322     1222221 122   233444      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       +.|++|..+|.....   ..+..   ..+..|+.-.    +.+.+.+.+.. .+.|++++-
T Consensus        80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence             799999999875421   12222   3455565444    45555555543 466777653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.18  E-value=0.035  Score=50.71  Aligned_cols=113  Identities=17%  Similarity=0.251  Sum_probs=68.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC-Cc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di-~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      .++|.|+||+|++|..++..|+..+.  ++++.|. +.  ....+.++...  ..++..+.+ -+|   ..++++     
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999886  8999998 54  23334444332  123443322 123   222232     


Q ss_pred             --CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k~---g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                        ..|++|..+|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|++++
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  140 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIA  140 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence              799999999975432   12222   345556544    445555555443 46677665

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.18  E-value=0.058  Score=49.53  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-C--CCh---hhhh-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-Q--PQL---ENAL-----  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t--~dl---~~al-----  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++..... ..+..+.. -  +|.   .+.+     
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHH
Confidence            45889999999999999999999886  899999987  3334444543221 12222221 1  121   1222     


Q ss_pred             --CCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tN  159 (390)
                        ...|++|..+|...  .+  ..+..   ..+..|+.-...+.+.+    .+ ...+.||+++-
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~-~~~g~iv~isS  152 (252)
T 3f1l_A           89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLK-SDAGSLVFTSS  152 (252)
T ss_dssp             HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-SSSCEEEEECC
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH-CCCCEEEEECC
Confidence              37899999999632  22  22332   34556655444444443    33 34566776653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.18  E-value=0.013  Score=55.66  Aligned_cols=97  Identities=21%  Similarity=0.199  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|.|||+ |.+|..++..+...+.  ++..+|.+....  ..+...  ....  .. ..++.+.+++||+|+++..
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~--g~~~--~~-~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLL--ARIAEM--GMEP--FH-ISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHT--TSEE--EE-GGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHC--CCee--cC-hhhHHHHhcCCCEEEECCC
Confidence            45679999999 9999999999988776  899999975221  112111  1222  11 2467788999999999873


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCcc
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  163 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPvd~  163 (390)
                      .    ++-       |.       ..+....|++++++++ +|.++
T Consensus       223 ~----~~i-------~~-------~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LVV-------TA-------NVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CCB-------CH-------HHHHHSCTTCEEEECSSTTCSB
T ss_pred             h----HHh-------CH-------HHHHhcCCCCEEEEecCCCCCC
Confidence            2    221       11       1233446889999997 77765

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.17  E-value=0.0052  Score=56.61  Aligned_cols=113  Identities=16%  Similarity=0.257  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.     .++..+.. -+|   .+++++     
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIG-----DAALAVAADISKEADVDAAVEAALSK   80 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999886  899999986  233333332     12332221 122   222333     


Q ss_pred             --CCcEEEEcCCCCCCCC----CCHH---HHHHHHH----HHHHHHHHHHHHhC---CCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKPG----MTRD---DLFNINA----GIVRTLCEGIAKCC---PNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g----~~r~---~l~~~N~----~ii~~ia~~I~~~~---p~a~iiv~tN  159 (390)
                        ..|++|..+|....++    .+..   ..+..|+    .+.+.+.+.+.+..   ..+.|++++-
T Consensus        81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS  147 (261)
T 3n74_A           81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAS  147 (261)
T ss_dssp             HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCc
Confidence              6799999999754322    1322   2344454    34555555555442   2556777653

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.17  E-value=0.064  Score=50.29  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=68.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------  107 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.+.   ......++.... ..++..+.+. +|   ..+++      
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999886  899999854   233444454332 2344444321 22   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          108 -TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                       ...|++|..+|......   .+..   ..+..|+.-    .+.+.+.+.+.. .+.||+++
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  162 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIA  162 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEC
Confidence             37899999999754322   2322   335556544    444444444443 46666665

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.036  Score=52.31  Aligned_cols=139  Identities=20%  Similarity=0.153  Sum_probs=73.6

Q ss_pred             HhccCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCc--hHHHHHHHhcccCC
Q 016424           15 SAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN--TPGVTADISHMDTG   91 (390)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~--~~g~a~DL~~~~~~   91 (390)
                      |..|-|-..+|+-.+.....    -+.+++.|+||+|++|..++..|+..+. ...|++.|.+.  ....+.++......
T Consensus        11 ~~~~~~~~~~m~~~~~~~~~----l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~   86 (287)
T 3rku_A           11 SSFLVPRGSHMSQGRKAAER----LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPN   86 (287)
T ss_dssp             ---------CCTTCHHHHHH----HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTT
T ss_pred             cceeeecCcccccCccchhh----cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCC
Confidence            33456666666654422111    1235899999999999999998887652 34899999986  34444555432222


Q ss_pred             CeEEEEeCC-CC---hhhhh-------CCCcEEEEcCCCCCCC----CCCHH---HHHHHHHHH----HHHHHHHHHHhC
Q 016424           92 AVVRGFLGQ-PQ---LENAL-------TGMDLVIIPAGVPRKP----GMTRD---DLFNINAGI----VRTLCEGIAKCC  149 (390)
Q Consensus        92 ~~v~~~~~t-~d---l~~al-------~dADiVIi~ag~p~k~----g~~r~---~l~~~N~~i----i~~ia~~I~~~~  149 (390)
                      .++..+... +|   ..+++       ...|++|..+|.....    ..+..   ..+..|+.-    .+.+.+.+.+..
T Consensus        87 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~  166 (287)
T 3rku_A           87 AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN  166 (287)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344443321 22   22223       3689999999965321    12322   345556544    444444444443


Q ss_pred             CCcEEEEec
Q 016424          150 PNATVNLIS  158 (390)
Q Consensus       150 p~a~iiv~t  158 (390)
                       .+.||+++
T Consensus       167 -~g~IV~is  174 (287)
T 3rku_A          167 -SGDIVNLG  174 (287)
T ss_dssp             -CCEEEEEC
T ss_pred             -CCeEEEEC
Confidence             46666665

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.16  E-value=0.048  Score=49.16  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=66.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEE-EeC-CCCh---hhh-------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRG-FLG-QPQL---ENA-------  106 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~-~~~-t~dl---~~a-------  106 (390)
                      ++|.|+||+|++|..++..|+..+.  ++++. +.+.  ......++....  .++.. +.+ -+|.   .++       
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRG--SPLVAVLGANLLEAEAATALVHQAAEV   77 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTT--CSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEeccCCCHHHHHHHHHHHHHh
Confidence            5799999999999999999998885  78887 7765  233334443321  12222 221 1232   222       


Q ss_pred             hCCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +.+.|+||..+|.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.++++|-
T Consensus        78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            34789999999875421   1222   2345566555    555555555443 456777653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.16  E-value=0.11  Score=48.54  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=69.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCChhhhh------CCCcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQLENAL------TGMDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl~~al------~dADiVI  114 (390)
                      +.+.|.||++++|..++..|+..+.  .|++.|++..+..+..+....  .++..+.. -+|. +++      -.-|++|
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g--~~~~~~~~Dv~d~-~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDG--GNASALLIDFADP-LAAKDSFTDAGFDILV   84 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTST-TTTTTSSTTTCCCEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhC--CcEEEEEccCCCH-HHHHHHHHhCCCCEEE
Confidence            3556669999999999999999987  899999986433333344322  22332221 1221 222      2469999


Q ss_pred             EcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRK-P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k-~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..+|.... +  .++..   ..+..|+    -..+..++.+.+....+.||+++
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnis  138 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIA  138 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            99987543 2  12332   2345554    44556666776666677788875

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=96.16  E-value=0.0075  Score=61.48  Aligned_cols=113  Identities=12%  Similarity=0.077  Sum_probs=69.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-----HHHHHHhcc-------cCCCeEEEEeCCCChhh-
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHM-------DTGAVVRGFLGQPQLEN-  105 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-----g~a~DL~~~-------~~~~~v~~~~~t~dl~~-  105 (390)
                      ..+++|.|+||+|.+|+.++..|...+  .+|++++.+...     .....+...       ....+++.+.+  |+.+ 
T Consensus       148 ~~~~~VLVTGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~--Dl~d~  223 (508)
T 4f6l_B          148 RPLGNTLLTGATGFLGAYLIEALQGYS--HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG--DFECM  223 (508)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHTBTTE--EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEE--BTTBC
T ss_pred             CCCCeEEEECCccchHHHHHHHHHhcC--CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEec--CCccc
Confidence            446899999999999999999885444  488988887621     111122111       01245565543  2222 


Q ss_pred             ----hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          106 ----ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       106 ----al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                          +..++|+||-+++... ......++...|+...+.+++.+.+ . ...++.+|
T Consensus       224 ~~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~-~~~~v~iS  277 (508)
T 4f6l_B          224 DDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  277 (508)
T ss_dssp             SSCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T-TCEEEEEE
T ss_pred             ccCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C-CCcEEEeC
Confidence                5679999999988653 1223344567799999999998887 3 34455443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.15  E-value=0.094  Score=48.23  Aligned_cols=114  Identities=13%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+... +|   ..++++     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            346889999999999999999999886  899999987  34455555443  2345544321 23   222333     


Q ss_pred             -CCcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                       .-|++|..+|.....   ..+..   ..+..|+.    +.+.+.+.+.+.. .+.|++++
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  141 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTG  141 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence             569999999975421   12222   33455543    4444555555443 46666664

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.15  E-value=0.0085  Score=58.78  Aligned_cols=67  Identities=19%  Similarity=0.193  Sum_probs=49.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      -..++|+|||. |.+|+.++..+. ..+.  ++..||.+. ....+.++       .++.   .+++.+.+++||+|+++
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKAL-------GAER---VDSLEELARRSDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHH-------TCEE---CSSHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhc-------CcEE---eCCHHHHhccCCEEEEe
Confidence            45679999999 999999999998 7776  899999976 22222222       1222   23677889999999998


Q ss_pred             CC
Q 016424          117 AG  118 (390)
Q Consensus       117 ag  118 (390)
                      ..
T Consensus       228 vp  229 (348)
T 2w2k_A          228 VP  229 (348)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.15  E-value=0.0043  Score=57.57  Aligned_cols=102  Identities=13%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~a  117 (390)
                      |||.|+||+|.+|+.++..|.......+++.+|.+....  .++...    .++.+.+.    .++.++++++|+||..+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~~l~~~----~~~~~~~D~~d~~~l~~~~~~~d~vi~~a   74 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA--STLADQ----GVEVRHGDYNQPESLQKAFAGVSKLLFIS   74 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT--HHHHHT----TCEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH--hHHhhc----CCeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence            479999999999999999888771123889999875211  112211    12222221    24567889999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +..  ++  .    ..|+.....+.+.+.+.... .++.+|
T Consensus        75 ~~~--~~--~----~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           75 GPH--YD--N----TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CCC--SC--H----HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CCC--cC--c----hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            753  11  1    34777777888888776543 444444

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.15  E-value=0.0077  Score=60.16  Aligned_cols=76  Identities=22%  Similarity=0.148  Sum_probs=52.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCC-cEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC----CCChhhhhCC--Cc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~-~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d--AD  111 (390)
                      |+||.|+|| |++|+.++..|...+.+ .++++.|.+.  +...+.++.... ..++.....    ..++.+.+++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            469999999 99999999999988744 6899999987  344455554321 112322221    1245566776  89


Q ss_pred             EEEEcCC
Q 016424          112 LVIIPAG  118 (390)
Q Consensus       112 iVIi~ag  118 (390)
                      +||.++|
T Consensus        79 vVin~ag   85 (405)
T 4ina_A           79 IVLNIAL   85 (405)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999986

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.15  E-value=0.044  Score=49.82  Aligned_cols=111  Identities=16%  Similarity=0.240  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeE-EEEeC-CCC---hhhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVV-RGFLG-QPQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v-~~~~~-t~d---l~~al------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.     .++ ..+.+ -+|   +.+++      
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEAV   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHhh
Confidence            45899999999999999999998886  899999976  223333331     122 22221 122   22222      


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .+.|+||..+|......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.+++++-
T Consensus        84 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS  144 (254)
T 2wsb_A           84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS  144 (254)
T ss_dssp             SCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            47899999998754321   222   2345556554    444444444443 466666653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.15  E-value=0.03  Score=51.79  Aligned_cols=69  Identities=12%  Similarity=0.027  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl~~al~dADiVIi~ag~  119 (390)
                      +|||.|+|| |.+|+.++..|...+.  +++.++.+....  ..+..    ..++.+.+ -+|+ + ++++|+||.+++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~----~~~~~~~~D~~d~-~-~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQM--EAIRA----SGAEPLLWPGEEP-S-LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGH--HHHHH----TTEEEEESSSSCC-C-CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhh--hhHhh----CCCeEEEeccccc-c-cCCCCEEEECCCc
Confidence            479999998 9999999999988876  899999876221  11221    12343332 2344 3 8899999999875


Q ss_pred             C
Q 016424          120 P  120 (390)
Q Consensus       120 p  120 (390)
                      .
T Consensus        74 ~   74 (286)
T 3ius_A           74 D   74 (286)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.13  E-value=0.035  Score=51.93  Aligned_cols=114  Identities=18%  Similarity=0.307  Sum_probs=68.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+.+. +|.   .+++       
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999988875  888988765  33344455432  2344443321 232   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .+.|+||..+|.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|-
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS  180 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  180 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            4689999999875322   1222   2345556554    444444443333 466666653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.13  E-value=0.038  Score=49.79  Aligned_cols=110  Identities=17%  Similarity=0.156  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .++|.|+||+|++|..++..|...+.  +|++.|.+.  ......++.      ++..+.+ -+|   +.+++       
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAF   76 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999998886  899999876  222222222      1222211 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~----~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .+.|+||..+|......   .+.   ...+..|+.-..    .+.+.+.+. ..+.|++++-
T Consensus        77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS  137 (234)
T 2ehd_A           77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGS  137 (234)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECC
Confidence            37899999998653211   122   234555654443    444444433 3466777653

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.12  E-value=0.021  Score=53.41  Aligned_cols=113  Identities=17%  Similarity=0.248  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .+.+.|.||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.. -+|   ..+++       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAG--LEGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45788889999999999999999887  899999986  334444454322  12222221 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHH----HHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia----~~I~~~~p~a~iiv~t  158 (390)
                      ...|++|..+|.....   ..+..   ..+..|+.-...+.    +.+.+. ..+.||+++
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~is  163 (270)
T 3ftp_A          104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNIT  163 (270)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEC
Confidence            3789999999975432   12322   34555654444444    444333 356677765

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.12  E-value=0.069  Score=51.01  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--------------hHHHHHHHhcccCCCeEEEEeC-CCC---
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQ---  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--------------~~g~a~DL~~~~~~~~v~~~~~-t~d---  102 (390)
                      .+++.|+||+|+||..++..|+..+.  +++++|.+.              +.....++...  ..++..+.. -+|   
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            35788889999999999999999886  899999861              12222223222  234444332 122   


Q ss_pred             hhhhh-------CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          103 LENAL-------TGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       103 l~~al-------~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..+.+       ...|++|..+|.....   ..+..   ..+..|+.    +.+.+.+.+.+....+.||+++-
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS  195 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSS  195 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECc
Confidence            22222       3789999999975421   22332   33555643    44455555555555677777764

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.10  E-value=0.072  Score=49.19  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEe-CCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhhC------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT------  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~D-i~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al~------  108 (390)
                      ++|.|+||+|++|..++..|+..+.  ++++.+ .+.  ......++....  .++..+.. -+|.   .++++      
T Consensus        27 k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999886  676655 443  233344444322  34444332 1232   22232      


Q ss_pred             -CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k~g---~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ..|+||..+|......   .+.   ...+..|+.-    ++.....+.+....+.|++++-
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A          103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence             7899999998754321   222   2345556443    3333444444556777877763

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.10  E-value=0.016  Score=58.57  Aligned_cols=94  Identities=16%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ....++|+|+|. |.||..++..+...+.  ++..+|++.... .+.+.     ..  +.    .++.+++++||+|+.+
T Consensus       208 ~L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~~-----G~--~~----~sL~eal~~ADVVilt  273 (436)
T 3h9u_A          208 MIAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAME-----GY--QV----LLVEDVVEEAHIFVTT  273 (436)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT-----TC--EE----CCHHHHTTTCSEEEEC
T ss_pred             cccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHHh-----CC--ee----cCHHHHHhhCCEEEEC
Confidence            345679999999 9999999999988776  899999986222 22211     11  21    2678999999999987


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      .+...--+.                 +.+....|++++++++++..
T Consensus       274 ~gt~~iI~~-----------------e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          274 TGNDDIITS-----------------EHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             SSCSCSBCT-----------------TTGGGCCTTEEEEECSSSGG
T ss_pred             CCCcCccCH-----------------HHHhhcCCCcEEEEeCCCCC
Confidence            654322111                 12444568999999998754

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.10  E-value=0.0049  Score=58.35  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-H-HHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P-GVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~-g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi  115 (390)
                      +||.|+||+|++|+.++..|...+.  +++.++.+.. . ....++...    .++.+.+.    .++.++++++|+||.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~----~v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSL----GAIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHT----TCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcC----CCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            3899999999999999999988875  7888888752 1 122233221    12222221    246688999999999


Q ss_pred             cCCCC
Q 016424          116 PAGVP  120 (390)
Q Consensus       116 ~ag~p  120 (390)
                      +++..
T Consensus        86 ~a~~~   90 (318)
T 2r6j_A           86 ALAFP   90 (318)
T ss_dssp             CCCGG
T ss_pred             CCchh
Confidence            98754

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.10  E-value=0.0066  Score=57.01  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~  108 (390)
                      +.+.|+||+|++|..++..|+..+.  +|++.|.+.  +...+.++.     .++..+.. -+|   ..+++       .
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  101 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIG-----DDALCVPTDVTDPDSVRALFTATVEKFG  101 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHT-----SCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhC-----CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4677789999999999999999886  899999986  333344442     12222221 122   22223       3


Q ss_pred             CCcEEEEcCCCCCC--C--CCCHH---HHHHHHHHH----HHHHHHHHHHhCC-CcEEEEecC
Q 016424          109 GMDLVIIPAGVPRK--P--GMTRD---DLFNINAGI----VRTLCEGIAKCCP-NATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k--~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p-~a~iiv~tN  159 (390)
                      ..|++|..+|....  +  ..+..   ..+..|+.-    .+.+.+.+.+..+ .+.||+++-
T Consensus       102 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  164 (272)
T 4dyv_A          102 RVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGS  164 (272)
T ss_dssp             CCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECc
Confidence            79999999997432  2  12322   345556544    5555555555442 577777754

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.09  E-value=0.031  Score=51.08  Aligned_cols=116  Identities=14%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.+. +|.   .+++       
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999998885  899999864  222333443211 2334443321 222   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tN  159 (390)
                      ...|+||..+|......   .+..   ..+..|+.-...+.+.    +.+....+.|+++|-
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            24899999998754221   2222   3355565444444444    444344466776653

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.07  E-value=0.0074  Score=56.72  Aligned_cols=112  Identities=16%  Similarity=0.181  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .+++.|.||+|++|..++..|+..+.  ++++.|.+.  +.....++.     .++..+.. -+|   ..+++       
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAKW   99 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999886  899999986  222333321     22322221 122   22223       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      ...|++|..+|.....   ..+.   ...+..|+.-...+.+.+..+   ...+.|++++-
T Consensus       100 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS  160 (277)
T 4dqx_A          100 GRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTS  160 (277)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence            3789999999965321   1222   234556655544444444332   23567777753

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.07  E-value=0.00099  Score=60.30  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..|||+|||+ |.+|+.++..|...+.  ++.++|.+..   ...+..    ..++.   . ++.++++++|+||++...
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~----~g~~~---~-~~~~~~~~aDvVilav~~   83 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLP----RGAEV---L-CYSEAASRSDVIVLAVHR   83 (201)
Confidence            3468999999 9999999998887765  7889998652   122211    11221   2 446788999999998631


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                          ...+ +       ++ +    +....++.++|.++|...
T Consensus        84 ----~~~~-~-------v~-~----l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           84 ----EHYD-F-------LA-E----LADSLKGRVLIDVSNNQK  109 (201)
Confidence                1111 1       11 2    222335778888888774

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.07  E-value=0.015  Score=52.69  Aligned_cols=112  Identities=19%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCC---hhhhhC---CCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENALT---GMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~d---l~~al~---dADi  112 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++.    ...+.. ..-+|   +.++++   ..|+
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~-~D~~~~~~~~~~~~~~~~id~   79 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP----GIEPVC-VDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEE-CCTTCHHHHHHHHTTCCCCCE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC----CCCEEE-EeCCCHHHHHHHHHHcCCCCE
Confidence            46899999999999999999998886  8999998752  22222221    111111 11122   233343   5799


Q ss_pred             EEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 016424          113 VIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (390)
Q Consensus       113 VIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tN  159 (390)
                      ||..+|......   .+.   ...+..|+.-...+.+.+    .+....+.|++++-
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 3d3w_A           80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS  136 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCc
Confidence            999998654211   122   234556655544444444    33343566777764

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=96.07  E-value=0.014  Score=56.52  Aligned_cols=71  Identities=11%  Similarity=0.073  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...+|+|||+ |.+|...+..+.....+.++.+||++.  +...+.++....  ..+. +   +++++++ ++|+|+++.
T Consensus       124 ~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~--~~~~-~---~~~~e~v-~aDvVi~aT  195 (322)
T 1omo_A          124 NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISAS-V---QPAEEAS-RCDVLVTTT  195 (322)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEE-E---CCHHHHT-SSSEEEECC
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC--ceEE-E---CCHHHHh-CCCEEEEee
Confidence            4569999999 999999998777644467999999986  344555554321  2333 3   3678899 999999975


Q ss_pred             C
Q 016424          118 G  118 (390)
Q Consensus       118 g  118 (390)
                      .
T Consensus       196 p  196 (322)
T 1omo_A          196 P  196 (322)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.07  E-value=0.0033  Score=55.46  Aligned_cols=102  Identities=15%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC---CCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~---dADiVIi~a  117 (390)
                      +|||.|+||+|++|+.++..|. .+.  ++++.|.+.. ....|+.+            ..++.++++   ..|+||..+
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            4689999999999999999888 765  8999998752 00011111            012223333   479999999


Q ss_pred             CCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhCC-CcEEEEec
Q 016424          118 GVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  158 (390)
Q Consensus       118 g~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~t  158 (390)
                      |......   .+.   ...+..|+.-...+.+.+.++-. .+.+++++
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s  114 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTT  114 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEEC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEc
Confidence            8653221   222   23456677766777776665522 25666665

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.06  E-value=0.13  Score=47.43  Aligned_cols=113  Identities=16%  Similarity=0.106  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-------  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+.. -+|.   .+++       
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45889999999999999999999886  899999986  344445554432  33443332 1232   2222       


Q ss_pred             CCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPR--KP--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      -..|++|..+|...  .+  ..+..   ..+..|+.    +.+.+.+.+.+..  +.||+++-
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  147 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS  147 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence            36799999998632  22  12322   23445544    3444444444432  66776653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.05  E-value=0.0041  Score=57.36  Aligned_cols=107  Identities=14%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEE-EeCCCChhhhh-------CCCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~-~~~t~dl~~al-------~dADiV  113 (390)
                      ++|.|+||+|++|..++..|+..+.  +|++.|.+.....     ..    .+.. .+...+..+++       ...|+|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~-----~~----~~~~d~~d~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNA-----DH----SFTIKDSGEEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTS-----SE----EEECSCSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccc-----cc----ceEEEeCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4789999999999999999999886  8999999862110     00    0110 00011222222       356999


Q ss_pred             EEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          114 IIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       114 Ii~ag~p~k~----g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                      |..+|.....    ..+.   ...+..|+.-...+.+.+..+- +.+.||+++-
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGA  145 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEec
Confidence            9999864321    1111   2345667776666776666553 3567777753

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.05  E-value=0.015  Score=54.11  Aligned_cols=111  Identities=12%  Similarity=0.057  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LTG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~d  109 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.... ..++....    +..+.+ -+|   ..++       +..
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~----~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAG----AVALYGDFSCETGIMAFIDLLKTQTSS   99 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHT----CEEEECCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcC----CeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            45788999999999999999998886  799999987221 12222211    111111 122   1122       236


Q ss_pred             CcEEEEcCCCCCCCC--CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          110 MDLVIIPAGVPRKPG--MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~g--~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                      .|++|..+|......  .+..   ..+..|+.-...+.+.+..+   ...+.||+++
T Consensus       100 iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~is  156 (260)
T 3gem_A          100 LRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHIS  156 (260)
T ss_dssp             CSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred             CCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            899999998654322  2222   34555654444444443332   2346677775

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.05  E-value=0.069  Score=49.65  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al------  107 (390)
                      +.+++.|.||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+.+. +|.   .+++      
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999886  899999986  23333444332  2234433321 222   2222      


Q ss_pred             --CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~i----a~~I~~~~p~a~iiv~tN  159 (390)
                        ...|++|..+|.....   ..+..   ..+..|+.-...+    .+.+.+. ..+.||+++-
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  158 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSS  158 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECC
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence              5789999999975321   12222   3344565444444    4444443 3466777764

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.05  E-value=0.024  Score=51.77  Aligned_cols=108  Identities=12%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-e--CCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhh-------CC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVN--TPGVTADISHMDTGAVVRGFLGQPQLENAL-------TG  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-D--i~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-------~d  109 (390)
                      +++.|+||+|++|..++..|+..+.  +|++. |  .+.  ......++    ...++.   ...+..+++       ..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~----~~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN----PGTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS----TTEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh----CCCccc---CHHHHHHHHHHHHHHcCC
Confidence            4788999999999999999999886  88998 5  765  22233333    111221   123333333       36


Q ss_pred             CcEEEEcCCCCCC----C--CCCHH---HHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 016424          110 MDLVIIPAGVPRK----P--GMTRD---DLFNINAGIVRT----LCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       110 ADiVIi~ag~p~k----~--g~~r~---~l~~~N~~ii~~----ia~~I~~~~p~a~iiv~tN  159 (390)
                      .|++|..+|....    +  ..+..   ..+..|+.-...    +.+.+.+. ..+.||+++-
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  134 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITS  134 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            8999999997543    2  12222   345556544444    44444333 3566777753

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.05  E-value=0.0087  Score=54.18  Aligned_cols=110  Identities=20%  Similarity=0.140  Sum_probs=63.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CC---ChhhhhCCC----c
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENALTGM----D  111 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~---dl~~al~dA----D  111 (390)
                      ++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.     .++..+.. -+   +..++++..    |
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~d   74 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLS-----NNVGYRARDLASHQEVEQLFEQLDSIPS   74 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCS-----SCCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh-----hccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence            4689999999999999999999886  799999986  222333331     12222111 12   223333333    8


Q ss_pred             EEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHhC-C-CcEEEEec
Q 016424          112 LVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKCC-P-NATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~~-p-~a~iiv~t  158 (390)
                      +||..+|......   .+..   ..+..|+.-...+.+.+..+- . .+.+++++
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~is  129 (230)
T 3guy_A           75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIM  129 (230)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEC
T ss_pred             EEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence            9999998654221   2322   345666665555555554432 1 23566665

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.04  E-value=0.043  Score=51.12  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--------------hHHHHHHHhcccCCCeEEEEeC-CCC---
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQ---  102 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--------------~~g~a~DL~~~~~~~~v~~~~~-t~d---  102 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.++              .......+...  ..++..+.. -+|   
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   85 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKDRAA   85 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHH
Confidence            45889999999999999999999886  899999862              12222223322  234443332 123   


Q ss_pred             hhhhh-------CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 016424          103 LENAL-------TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (390)
Q Consensus       103 l~~al-------~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tN  159 (390)
                      .++++       ...|++|..+|.....   ..+..   ..+..|+.-...+.+.    +.+. ..+.||+++-
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  158 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSS  158 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence            22223       3789999999875421   22332   3455565444444444    4443 3566777753

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.03  E-value=0.06  Score=50.46  Aligned_cols=114  Identities=15%  Similarity=0.182  Sum_probs=72.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  .|++.|+++  +...+.++....  .++..+... +|          ..+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            34566669999999999999999987  899999987  344555565432  233322211 12          12234


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..||......   .+..   ..+..|+    -..+..++.+.+....+.||+++
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnis  145 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIG  145 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEe
Confidence            46899999998754321   2332   2344554    45566777776666678888886

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.03  E-value=0.01  Score=57.61  Aligned_cols=67  Identities=21%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+. ......   ..    .++.   . ++.+.+++||+|+++.
T Consensus       153 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~---~~----g~~~---~-~l~e~l~~aDvVi~~v  218 (330)
T 2gcg_A          153 LTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEEAA---EF----QAEF---V-STPELAAQSDFIVVAC  218 (330)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHHHH---TT----TCEE---C-CHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhHHH---hc----Ccee---C-CHHHHHhhCCEEEEeC
Confidence            44679999999 9999999999887776  899999875 221111   11    1222   2 5778899999999986


Q ss_pred             CC
Q 016424          118 GV  119 (390)
Q Consensus       118 g~  119 (390)
                      ..
T Consensus       219 p~  220 (330)
T 2gcg_A          219 SL  220 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.00  E-value=0.071  Score=48.78  Aligned_cols=113  Identities=20%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------hC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l~  108 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+. .... .++...  ..++..+.. -+|.   .++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAE-AAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHH-HHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHH-HHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45799999999999999999999886  899999976 3221 233322  133443332 1232   122       34


Q ss_pred             CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~k~---g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..|++|..+|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|++++-
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence            789999999875321   12222   345566554    444444455443 466776653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.00  E-value=0.06  Score=49.99  Aligned_cols=115  Identities=15%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      .+++.|+||+|++|..++..|+..+.  ++++.|.+.   ......++....  .++..+.. -+|.   .+++      
T Consensus        18 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           18 GKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45788899999999999999999886  888888765   233444454422  34444332 1232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                       ...|++|..+|......   .+..   ..+..|+.-...+.+.+..+- ..+.|++++-
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence             26799999999753221   2332   346677766666666666654 3566777654

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=95.98  E-value=0.037  Score=51.20  Aligned_cols=114  Identities=16%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al~-----  108 (390)
                      .+++.|.||+|++|..++..|+..+.  ++++. +.+.  ......++....  .++..+.+. +|.   +++++     
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999886  77775 6665  334444554432  344444321 232   22232     


Q ss_pred             --CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                        .-|++|..+|.....   ..+..   ..+..|+.-...+.+.+..+   ...+.|++++
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~is  140 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSIS  140 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence              459999999864322   12222   23555654444444443322   2356677765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.98  E-value=0.066  Score=49.93  Aligned_cols=116  Identities=11%  Similarity=0.015  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ....+.++.... ..++..+.. -+|.   .+++      
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346889999999999999999999886  899999986  333444453321 233444332 1222   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424          108 -TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t  158 (390)
                       ...|++|..+|......   .+..   ..+..|+.-...+.+.+...   ...+.|++++
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~is  163 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNIT  163 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEEC
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence             37899999998643211   2322   34556655555555444322   2356677775

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=95.98  E-value=0.0046  Score=58.24  Aligned_cols=108  Identities=19%  Similarity=0.076  Sum_probs=68.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC--CCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~--dADiVIi  115 (390)
                      |||.|+||+|++|+.++..|...+.  +++++|..... ....+.     ..+..+.+. +   ++.++++  ++|+||.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   72 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVP-----KGVPFFRVDLRDKEGVERAFREFRPTHVSH   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSC-----TTCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhcc-----cCeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999998876  88999874310 001111     112222111 1   2445666  8999999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .++.....  .......+..|+.-...+.+.+.+.... .+|++|
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~S  116 (311)
T 2p5y_A           73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFAS  116 (311)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            98754311  1123456677888888888888776543 444443

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=95.98  E-value=0.0033  Score=57.81  Aligned_cols=101  Identities=21%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCC--CcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTG--MDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~d--ADiVIi~ag  118 (390)
                      |||.|+||+|++|+.++..|.. +  .++++.|.+....     .    .  +..- +...++.+++++  .|+||.++|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g--~~V~~~~r~~~~~-----~----~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-R--HEVIKVYNSSEIQ-----G----G--YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-T--SCEEEEESSSCCT-----T----C--EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-C--CeEEEecCCCcCC-----C----C--ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999998884 5  4899999875210     0    1  2110 001234455665  999999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .....  .......+..|+.....+.+.+.+..  +.++++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            65321  12344567788888888888887754  3566554

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=95.97  E-value=0.0088  Score=55.62  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC--CcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d--ADiVIi~  116 (390)
                      -++|||.|+||+|.+|+.++..|...+.........+.   ....|+.+            ..++.+++++  +|+||-+
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~---~~~~D~~d------------~~~~~~~~~~~~~d~Vih~   68 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVS---SKDADLTD------------TAQTRALFEKVQPTHVIHL   68 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECC---TTTCCTTS------------HHHHHHHHHHSCCSEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccC---ceecccCC------------HHHHHHHHhhcCCCEEEEC
Confidence            35789999999999999999999887740000000000   00111111            1234566666  9999999


Q ss_pred             CCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRK---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k---~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++....   ......+.+..|+.-...+.+.+.+.... .+|.+|
T Consensus        69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~S  112 (319)
T 4b8w_A           69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCL  112 (319)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEc
Confidence            886421   12344567888999999999998887644 344443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.97  E-value=0.06  Score=50.28  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++..+.+. +|   ..+++       
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  899999986  233333333221 1244444321 23   22222       


Q ss_pred             CCCcEEEEc-CCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          108 TGMDLVIIP-AGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~-ag~p~k~--g~~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      .+.|+||.. +|....+  ..+.   ...+..|+.-...+.+.+..+-  ..+.|++++
T Consensus       105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~is  163 (286)
T 1xu9_A          105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVS  163 (286)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEEC
Confidence            378999998 6765332  1222   2335555544333333332220  135566664

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.96  E-value=0.038  Score=51.27  Aligned_cols=115  Identities=14%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT-----  108 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~-----  108 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  .......+...  ..++..+.+. +|   +.++++     
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~  108 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQEKD  108 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHHHH
Confidence            446899999999999999999988775  899999876  23333333221  1234433321 22   223333     


Q ss_pred             --CCcEEEEcCCCCCC--C---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRK--P---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k--~---g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                        ..|+||..+|....  +   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.+++++-
T Consensus       109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS  172 (279)
T 3ctm_A          109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSS  172 (279)
T ss_dssp             HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECc
Confidence              48999999886432  1   1111   1234555544    556666666544 455666653

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.95  E-value=0.069  Score=50.52  Aligned_cols=116  Identities=14%  Similarity=0.234  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCC-CCh---hhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQL---ENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t-~dl---~~al~-----  108 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++..... ..++..+.+. +|.   .++++     
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            45788999999999999999998886  899999986  2333444433211 0144443321 232   22232     


Q ss_pred             --CCcEEEEcCCCCCC-C----CCCHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRK-P----GMTRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k-~----g~~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                        ..|++|..+|.... +    ..+..   ..+..|+.-...+.+.+..+-  ..+.||+++
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~is  165 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVS  165 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence              78999999986432 2    12222   345556544444444333321  126777775

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.95  E-value=0.16  Score=47.47  Aligned_cols=113  Identities=16%  Similarity=0.239  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  .|+++|+++  +...+.++....  .++..+.. -+|.          .+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45677779999999999999999886  899999987  455566665432  23333322 1221          2334


Q ss_pred             CCCcEEEEcCCCC--CCC--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVP--RKP--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p--~k~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..||..  .+|  ..+..   ..+..|+    -..+...+.+.+.. .+.||+++
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis  143 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTA  143 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEe
Confidence            5789999999863  333  23332   2344453    45566677666655 56677775

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.95  E-value=0.055  Score=49.68  Aligned_cols=117  Identities=17%  Similarity=0.146  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh---CCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhhC---
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT---  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~---~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al~---  108 (390)
                      .+++.|+||+|++|..++..|+.   .+.  +|++.|.+.  ......++.......++..+... +|.   .++++   
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            34688889999999999999998   565  899999986  33344445432112344444321 232   11111   


Q ss_pred             ------CCc--EEEEcCCCCCCCC------CCHH---HHHHHHHHHHHHHHHHHHHhC-----CCcEEEEecC
Q 016424          109 ------GMD--LVIIPAGVPRKPG------MTRD---DLFNINAGIVRTLCEGIAKCC-----PNATVNLISN  159 (390)
Q Consensus       109 ------dAD--iVIi~ag~p~k~g------~~r~---~l~~~N~~ii~~ia~~I~~~~-----p~a~iiv~tN  159 (390)
                            .-|  ++|..+|.....+      .+..   ..+..|+.-...+.+.+..+-     ..+.||+++-
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS  156 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcC
Confidence                  347  9999998743211      2322   346677766666666665543     2366777753

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.94  E-value=0.029  Score=51.61  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCChh---hhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQLE---NALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~al~dADiVI  114 (390)
                      -+.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ....++.      .+..+.. ..+..   +.+.+.|+||
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~--~~~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~lv   86 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE--ELLKRSG------HRYVVCDLRKDLDLLFEKVKEVDILV   86 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH--HHHHHTC------SEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH--HHHHhhC------CeEEEeeHHHHHHHHHHHhcCCCEEE
Confidence            4456899999999999999999998886  899999875  1122221      1222110 12332   3344899999


Q ss_pred             EcCCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          115 IPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       115 i~ag~p~k~g---~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..+|......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.|++++-
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           87 LNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            9999754321   222   2334455433    445555555543 466776653

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.93  E-value=0.0043  Score=57.81  Aligned_cols=101  Identities=14%  Similarity=0.131  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCC-CcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTG-MDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d-ADiVIi  115 (390)
                      +|||.|+|| |.+|+.++..|...+.  +|+.++.+...     +.     ..++.+.+    ..++.+++++ +|+||.
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~-----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih   69 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MP-----AGVQTLIADVTRPDTLASIVHLRPEILVY   69 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CC-----TTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----cc-----cCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence            579999996 9999999999988876  88999987521     10     11222111    1234456677 999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +++...   ....+....|+.....+.+.+.+.... .+|.+|
T Consensus        70 ~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           70 CVAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             CHHHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             eCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            886432   122334456777788888887764433 455444

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.92  E-value=0.076  Score=51.15  Aligned_cols=69  Identities=19%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~a  117 (390)
                      +++||+|||+ |.+|..++..+...+-+.-+.++|.+...  +..+.... .  ++.+   +|+++.++  ++|+|+++.
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~--~~~~a~~~-g--~~~~---~~~~~~l~~~~~D~V~i~t   73 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFIEG--AQRLAEAN-G--AEAV---ASPDEVFARDDIDGIVIGS   73 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHH--HHHHHHTT-T--CEEE---SSHHHHTTCSCCCEEEECS
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCHHH--HHHHHHHc-C--Ccee---CCHHHHhcCCCCCEEEEeC
Confidence            4679999999 99999999888876543334589998622  12222211 1  3443   47888888  899999986

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=95.92  E-value=0.039  Score=51.81  Aligned_cols=112  Identities=17%  Similarity=0.087  Sum_probs=72.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeCC-CC---hhhhhC---CC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ-PQ---LENALT---GM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~---dA  110 (390)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+...  ....++     ..++..+... +|   ..++++   ..
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~i   87 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGA   87 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCC
Confidence            456899999999999999999999886  89999998622  222222     2345544321 23   223333   56


Q ss_pred             cEEEEcCCCCCCCC-C---CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          111 DLVIIPAGVPRKPG-M---TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       111 DiVIi~ag~p~k~g-~---~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |++|..+|....+. .   .-...+..|..-...+.+.+...-.. .|++++-
T Consensus        88 D~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS  139 (291)
T 3rd5_A           88 DVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS  139 (291)
T ss_dssp             EEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred             CEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence            99999999753221 1   22346778887777777777666543 4666553

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.88  E-value=0.014  Score=55.44  Aligned_cols=151  Identities=16%  Similarity=0.132  Sum_probs=84.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEE-EEeCCchHHHHHHHhccc--CCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~-L~Di~~~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ++|||+|+|++|.+|+.++..+...+-. +|+ .+|.+.......|+....  ....+..+   +|+.+.++++|+||-.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~-elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~---~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQ---SSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEE---SCSTTTTTSCSEEEEC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCchhhhhhhHHHHcCCCcCCceec---CCHHHHhcCCCEEEEc
Confidence            4689999999999999999887765522 555 788765211122332221  11233332   4677888899999944


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-ccc---HH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLD---VV  192 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Ld---s~  192 (390)
                      . .|               ....+++..+.+.+.+   +++.+| .....-. +.+.+...-- ..++... .+-   ..
T Consensus        80 t-~p---------------~~~~~~~~~a~~~G~~---vVigTt-G~~~e~~-~~L~~~a~~~-~vv~a~N~siGvn~~~  137 (273)
T 1dih_A           80 T-RP---------------EGTLNHLAFCRQHGKG---MVIGTT-GFDEAGK-QAIRDAAADI-AIVFAANFSVGVNVML  137 (273)
T ss_dssp             S-CH---------------HHHHHHHHHHHHTTCE---EEECCC-CCCHHHH-HHHHHHTTTS-CEEECSCCCHHHHHHH
T ss_pred             C-Ch---------------HHHHHHHHHHHhCCCC---EEEECC-CCCHHHH-HHHHHhcCCC-CEEEEecCcHHHHHHH
Confidence            3 11               1345566666665533   445555 3332222 2333332211 1233221 111   35


Q ss_pred             HHHHHHHHHhCCCCCCCceEEeecccC
Q 016424          193 RANTFVAEVLGLDPRDVDVPVVGGHAG  219 (390)
Q Consensus       193 R~~~~la~~l~v~p~~V~~~ViG~Hg~  219 (390)
                      ++-+..|+.|+   .+-++-++--|+.
T Consensus       138 ~l~~~aa~~~~---~~~dieiiE~Hh~  161 (273)
T 1dih_A          138 KLLEKAAKVMG---DYTDIEIIEAHHR  161 (273)
T ss_dssp             HHHHHHHHHHT---TTSEEEEEEEECT
T ss_pred             HHHHHHHHhcC---CCCCEEEEEeecC
Confidence            66778888886   4677888888886

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.86  E-value=0.019  Score=54.24  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC--CChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ--PQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t--~dl~~al~dADiVIi  115 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|+++|.+.  ....+.++.... ...+....-+  .++.++++++|+||.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcC-CcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence            456899999779999999999998885  699999986  333444443211 1111111111  234577889999999


Q ss_pred             cCCCC
Q 016424          116 PAGVP  120 (390)
Q Consensus       116 ~ag~p  120 (390)
                      ++|..
T Consensus       195 ~ag~g  199 (287)
T 1lu9_A          195 AGAIG  199 (287)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            98754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.86  E-value=0.053  Score=50.31  Aligned_cols=106  Identities=13%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~d  109 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+...           ..++..+.+ -+|   ..+++       ..
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~-----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   74 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPG-----------EAKYDHIECDVTNPDQVKASIDHIFKEYGS   74 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCC-----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCccc-----------CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999886  89999987522           011121111 112   22222       37


Q ss_pred             CcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (390)
Q Consensus       110 ADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN  159 (390)
                      .|++|..+|.....   ..+.   ...+..|+.-...+.+.+..+   ...+.||+++-
T Consensus        75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  133 (264)
T 2dtx_A           75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISS  133 (264)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            89999999875421   1232   234566665544455544433   23466777753

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.85  E-value=0.076  Score=50.10  Aligned_cols=116  Identities=18%  Similarity=0.189  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCC-CCh---hhh-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQ-PQL---ENA-----  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a-----  106 (390)
                      +.+++.|+||+|++|..++..|+..+.  ++++.|.+.    .......+...  ..++..+.+. +|.   +++     
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            346899999999999999999999886  899999873    12222233322  2344433221 221   111     


Q ss_pred             --hCCCcEEEEcCCCCCCCC----CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          107 --LTGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       107 --l~dADiVIi~ag~p~k~g----~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                        +...|++|..+|.....+    .+.   ...+..|+.-...+.+.+...- ..+.||+++-
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence              247899999999743221    232   3456778777777777776654 3567777753

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.84  E-value=0.048  Score=50.84  Aligned_cols=115  Identities=14%  Similarity=0.174  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCC-CCh---hhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQL---ENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t-~dl---~~al------  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++..... ..++..+.+. +|.   .+++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            35788899999999999999999886  899999986  2333444443211 0144444321 232   2222      


Q ss_pred             -CCCcEEEEcCCCCCC-C------CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRK-P------GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k-~------g~~r---~~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tN  159 (390)
                       ...|++|..+|.... +      ..+.   ...+..|+.-...+.+.    +.+..  +.||+++-
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  148 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSS  148 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecC
Confidence             268999999986532 2      1222   23355565444444444    33333  66777753

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.84  E-value=0.033  Score=50.87  Aligned_cols=111  Identities=14%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCChh------hhhCCCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQLE------NALTGMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl~------~al~dADiV  113 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+...  ..++.+.   .++..+.+ -+|..      +.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKY---PGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGS---TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHhc---cCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            45889999999999999999999886  89999987521  1112211   12333322 12321      124578999


Q ss_pred             EEcCCCCCCC---CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424          114 IIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       114 Ii~ag~p~k~---g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |..+|.....   ..+..   ..+..|+.-.    +.+.+.+.+. ..+.|++++-
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS  133 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSS  133 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence            9999875421   12222   3345555444    4444444333 3566777754

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=95.83  E-value=0.041  Score=53.86  Aligned_cols=74  Identities=18%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|||+ |++|+.++..|+..+ +.+|.|+|-+.                     +...+..|........++.+...
T Consensus        37 ~~VlivG~-GGlG~~ia~~La~~G-vg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~  114 (346)
T 1y8q_A           37 SRVLLVGL-KGLGAEIAKNLILAG-VKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED  114 (346)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHT-CSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcC-CCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence            39999999 999999999999887 57899999763                     11223345554434566665321


Q ss_pred             --CChhhhhCCCcEEEEcC
Q 016424          101 --PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 --~dl~~al~dADiVIi~a  117 (390)
                        ....+-+++.|+||.+.
T Consensus       115 ~~~~~~~~~~~~dvVv~~~  133 (346)
T 1y8q_A          115 IEKKPESFFTQFDAVCLTC  133 (346)
T ss_dssp             GGGCCHHHHTTCSEEEEES
T ss_pred             cCcchHHHhcCCCEEEEcC
Confidence              11246689999999875

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.83  E-value=0.09  Score=48.27  Aligned_cols=114  Identities=12%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH----HHHHHHhcccCCCeEEEEeC-CCCh---hhhhC-----
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFLG-QPQL---ENALT-----  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~----g~a~DL~~~~~~~~v~~~~~-t~dl---~~al~-----  108 (390)
                      +++.|+||+|++|..++..|+..+.  +|++.|.+...    ....++...  ..++..+.. -+|.   .++++     
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999988876  89999987622    223334332  234444332 1232   22232     


Q ss_pred             --CCcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          109 --GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 --dADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                        ..|++|..+|.....   ..+..   ..+..|+.    +.+.+.+.+.+....+.|++++-
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence              789999999875321   12222   34555654    34444444544444366777653

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.82  E-value=0.094  Score=48.55  Aligned_cols=115  Identities=16%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------  107 (390)
                      +++|.|+||+|++|..++..|+..+.  ++++. +.+.  ......++...  ..++..+.+. +|   ..+++      
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            45788889999999999999999886  77666 5443  23333444332  2345444321 22   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCC----CCHH---HHHHHHHHH----HHHHHHHHHHh--CCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKPG----MTRD---DLFNINAGI----VRTLCEGIAKC--CPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g----~~r~---~l~~~N~~i----i~~ia~~I~~~--~p~a~iiv~tN  159 (390)
                       ...|+||..+|....++    .+..   ..+..|+.-    .+.+.+.+.+.  ...+.||++|-
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A          102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence             36799999999754322    2322   345555443    34444444442  23566777653

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.81  E-value=0.027  Score=55.44  Aligned_cols=94  Identities=22%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|.|||. |.||+.++..+...+.  +|..||.+. ....+.++.       ++.   ..++++.++.||+|+++.
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEECS
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEECC
Confidence            45679999999 9999999999987776  899999875 222332221       122   246889999999999986


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          118 GV-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       118 g~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .. |.-.++-       |       .+.+....|++++|+++.
T Consensus       229 Plt~~t~~li-------~-------~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          229 PLTEKTRGMF-------N-------KELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             CCCTTTTTCB-------S-------HHHHHHSCTTEEEEECSC
T ss_pred             CCCHHHHHhh-------c-------HHHHhcCCCCCEEEECcC
Confidence            32 2222221       1       122344568999999964

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=95.81  E-value=0.06  Score=49.44  Aligned_cols=110  Identities=14%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~  108 (390)
                      +++.|.||+|++|..++..|+..+.  +|++.|.+.  ......++.     .++..+.. -+|   ..+++       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3688889999999999999999886  899999986  222333332     12332221 122   22222       2


Q ss_pred             CCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          109 GMDLVIIPAGVPR--KP--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       109 dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..|++|..+|...  .+  ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|++++-
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence            6899999999753  22  12322   345556443    444444444443 466777653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.80  E-value=0.045  Score=55.26  Aligned_cols=94  Identities=16%  Similarity=0.182  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .....+|+|+|. |.||..++..+...+.  ++..+|++.... .+...     .  .+.    .++.+++++||+|+.+
T Consensus       217 ~L~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~~~-----G--~~v----~~Leeal~~ADIVi~a  282 (435)
T 3gvp_A          217 MFGGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQACMD-----G--FRL----VKLNEVIRQVDIVITC  282 (435)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT-----T--CEE----CCHHHHTTTCSEEEEC
T ss_pred             eecCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHHHc-----C--CEe----ccHHHHHhcCCEEEEC
Confidence            345679999999 9999999999988776  899999986221 22211     1  111    2578999999999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      .|.+.   .-.              .+.+....|++++++++.+-.
T Consensus       283 tgt~~---lI~--------------~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          283 TGNKN---VVT--------------REHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             SSCSC---SBC--------------HHHHHHSCTTEEEEECSSTTT
T ss_pred             CCCcc---cCC--------------HHHHHhcCCCcEEEEecCCCc
Confidence            54332   110              123344578999999987743

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.79  E-value=0.047  Score=50.46  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LTG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~d  109 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+...     +..      +..+.+ -+|   ..++       +..
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~-----~~~------~~~~~~Dl~d~~~v~~~~~~~~~~~g~   87 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEP-----PEG------FLAVKCDITDTEQVEQAYKEIEETHGP   87 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCC-----CTT------SEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHh-----hcc------ceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999998886  89999987511     000      111111 112   1222       234


Q ss_pred             CcEEEEcCCCCCCC------CCCHHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCC
Q 016424          110 MDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPV  161 (390)
Q Consensus       110 ADiVIi~ag~p~k~------g~~r~~l~~~N~~ii~~ia~----~I~~~~p~a~iiv~tNPv  161 (390)
                      .|++|..+|.....      .......+..|+.-...+.+    .+.+. ..+.||+++--.
T Consensus        88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~  148 (253)
T 2nm0_A           88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVV  148 (253)
T ss_dssp             CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchh
Confidence            69999999875321      12234456666654444444    44333 356677776443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=95.79  E-value=0.048  Score=51.23  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------  107 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.  +.....++...  ..++..+.+. +|   ..+++       
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35788889999999999999999886  899999986  34444555432  2334433211 22   22222       


Q ss_pred             CCCcEEEEcCCCCCCC----CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP----GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~----g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ...|++|..+|.....    ..+..   ..+..|+.-.    +.+.+.+.+. ..+.|++++-
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  145 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSS  145 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcC
Confidence            3789999999964222    12322   3345554433    3344444433 3566777653

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.78  E-value=0.087  Score=48.80  Aligned_cols=114  Identities=19%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-----  107 (390)
                      +.++|.|+||+|++|..++..|+..+.  ++++.|.+.   ......++....  .++..+... +|   ..+++     
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~  103 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQ  103 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999886  899999854   223333343322  344443321 22   22223     


Q ss_pred             --CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          108 --TGMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                        ...|++|..+|......   .+..   ..+..|+.    +.+.+.+.+.+.. .+.|++++
T Consensus       104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~is  165 (271)
T 4iin_A          104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVA  165 (271)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEe
Confidence              37899999999754321   2222   33455544    3344444444443 45666665

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.78  E-value=0.11  Score=48.37  Aligned_cols=112  Identities=23%  Similarity=0.361  Sum_probs=66.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------  106 (390)
                      +.++|.|+||+|++|..++..|+..+.  .+++.|.+.  +.....++.     .++..+.+ -+|.   .++       
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAERE   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence            346888999999999999999999886  899999876  233333331     23333322 1232   122       


Q ss_pred             hCCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424          107 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +...|++|..+|......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++-
T Consensus        99 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS  160 (266)
T 3grp_A           99 MEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITS  160 (266)
T ss_dssp             HTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence            237899999999754221   121   2345566555    555555555443 466776653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=95.77  E-value=0.078  Score=49.88  Aligned_cols=44  Identities=16%  Similarity=0.147  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEe-CCc--hHHHHHHHh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADIS   86 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~D-i~~--~~g~a~DL~   86 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.| .+.  ....+.++.
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~~~~~~~~~~l~   55 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLN   55 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHh
Confidence            35788889999999999999999886  899999 875  233444453

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.75  E-value=0.02  Score=56.24  Aligned_cols=93  Identities=20%  Similarity=0.278  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|+|||. |.+|+.++..+...+.  +|..||.+.....+.++.       ++.   ..++.+.++.||+|++...
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Cee---cCCHHHHHhcCCEEEEcCC
Confidence            45679999999 9999999999987776  899999875322222221       121   2367888999999999863


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      . +.-.++     +  |       ...+....|++++|+++
T Consensus       233 ~t~~t~~l-----i--~-------~~~l~~mk~gailIN~a  259 (347)
T 1mx3_A          233 LNEHNHHL-----I--N-------DFTVKQMRQGAFLVNTA  259 (347)
T ss_dssp             CCTTCTTS-----B--S-------HHHHTTSCTTEEEEECS
T ss_pred             CCHHHHHH-----h--H-------HHHHhcCCCCCEEEECC
Confidence            2 211121     0  0       12333445889999986

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.75  E-value=0.027  Score=53.54  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc----------------------CCCeE-EE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------------TGAVV-RG   96 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~----------------------~~~~v-~~   96 (390)
                      +.++|.|||+ |.+|...+..|...+.  +++++|.+.......++.+..                      ....+ +.
T Consensus        12 ~~k~VLVVGg-G~va~rka~~Ll~~Ga--~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~   88 (274)
T 1kyq_A           12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEY   88 (274)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--EEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEE
Confidence            5679999999 9999999999988886  899999764222211222221                      12344 54


Q ss_pred             EeCCCChhhhhC------CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424           97 FLGQPQLENALT------GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus        97 ~~~t~dl~~al~------dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      ..+.-+ .+.+.      ++|+||.+.+.+           ..|..+... |+.  .++..-++-++.+|-
T Consensus        89 i~~~~~-~~dL~~l~~~~~adlViaat~d~-----------~~n~~I~~~-Ar~--~f~~~i~VNvvd~pe  144 (274)
T 1kyq_A           89 IRSDFK-DEYLDLENENDAWYIIMTCIPDH-----------PESARIYHL-CKE--RFGKQQLVNVADKPD  144 (274)
T ss_dssp             ECSSCC-GGGGCCSSTTCCEEEEEECCSCH-----------HHHHHHHHH-HHH--HHCTTSEEEETTCGG
T ss_pred             EcCCCC-HHHHhhcccCCCeEEEEEcCCCh-----------HHHHHHHHH-HHH--hcCCCcEEEECCCcc
Confidence            443322 35577      999999986533           234433322 222  244455566677883

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=95.74  E-value=0.17  Score=47.43  Aligned_cols=118  Identities=16%  Similarity=0.188  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---------HHHHHHHhcccCCCeEEEEeC-CCC---hhhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG-QPQ---LENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---------~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a  106 (390)
                      +.+.+.|+||+|++|..++..|+..+.  +|++.|.+..         ...+.++...  ..++..+.. -+|   ..++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~   83 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAAA   83 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence            345889999999999999999999886  8999998751         2233444332  234444432 122   2222


Q ss_pred             h-------CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 016424          107 L-------TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISNPV  161 (390)
Q Consensus       107 l-------~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~tNPv  161 (390)
                      +       -..|++|..+|.....   ..+..   ..+..|+.-...+.+.+...-   ..+.|++++-..
T Consensus        84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  154 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPI  154 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChh
Confidence            3       3789999999975321   22322   345678777777777766553   456788876543

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.71  E-value=0.063  Score=49.04  Aligned_cols=112  Identities=15%  Similarity=0.227  Sum_probs=66.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------  108 (390)
                      +++.|.||+|++|..++..|+..+.  ++++.|...   ......++....  .++..+.+ -+|   ..++++      
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4788889999999999999999886  888888754   233444454332  33443332 123   222233      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                       ..|++|..+|.....   ..+..   ..+..|+.-.    +...+.+.+.. .+.|++++
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~is  140 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLS  140 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence             789999999875422   12322   3455565444    44444444443 45666665

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.68  E-value=0.0033  Score=59.05  Aligned_cols=109  Identities=14%  Similarity=0.061  Sum_probs=68.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhC--CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhC--CCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALT--GMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~--~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~--dADiVIi~  116 (390)
                      |||.|+||+|.+|+.++..|...  +.  +++++|.+......  ....   ..+..= ....++.++++  ++|+||-+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDV--VNSG---PFEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHH--HHSS---CEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCccccc--cCCC---ceEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999888776  44  78889987522111  1111   011110 00123445677  89999999


Q ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g-~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|...... ....+.+..|+.-...+.+.+.+.... .++++|
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  117 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPS  117 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCE
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            98642211 234456778888888998888875433 455443

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.67  E-value=0.088  Score=48.94  Aligned_cols=110  Identities=19%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++..      +..+.+ -+|   ..+++       
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  8999999762  222223221      222221 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC----CCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g----~~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      ...|++|..+|.....+    .+.   ...+..|+.-...+.+.+..+-  ..+.||+++
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~is  140 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINIS  140 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            37899999998743211    222   2345556544444444433210  146677665

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.66  E-value=0.017  Score=55.32  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +.++|.|||+ |++|..++..|...+ +.+|.++|.+.  +...+.++... . ..+.  . ..++.++++++|+||.+.
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G-~~~V~v~nR~~~ka~~la~~~~~~-~-~~~~--~-~~~~~~~~~~aDivIn~t  212 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTA-AERIDMANRTVEKAERLVREGDER-R-SAYF--S-LAEAETRLAEYDIIINTT  212 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHSCSS-S-CCEE--C-HHHHHHTGGGCSEEEECS
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHhhhc-c-Ccee--e-HHHHHhhhccCCEEEECC
Confidence            4579999999 999999999998876 35899999975  23344433221 1 1221  1 125667889999999998


Q ss_pred             CCCCC
Q 016424          118 GVPRK  122 (390)
Q Consensus       118 g~p~k  122 (390)
                      +.+..
T Consensus       213 ~~~~~  217 (297)
T 2egg_A          213 SVGMH  217 (297)
T ss_dssp             CTTCS
T ss_pred             CCCCC
Confidence            76543

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=95.65  E-value=0.057  Score=49.70  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+..   .....++.... ..++..+.+ -+|   ..+++      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35788999999999999999999886  8999998762   22233333210 123443322 122   22223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                       ...|++|..+|......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++-
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence             37899999999754211   222   234555655    4444555554443 466777753

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=95.65  E-value=0.043  Score=49.87  Aligned_cols=106  Identities=13%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC---CCChhh-------hhCCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLEN-------ALTGMD  111 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~---t~dl~~-------al~dAD  111 (390)
                      ++|.|+||+|++|..++..|+..+.  +|++.|.+... ...++.       +..+..   ..+..+       .+.+.|
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~~~g~id   72 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-------AVPLPTDLEKDDPKGLVKRALEALGGLH   72 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-------CEEEECCTTTSCHHHHHHHHHHHHTSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-------cEEEecCCchHHHHHHHHHHHHHcCCCC
Confidence            5799999999999999999999886  89999998632 223331       111111   012222       345799


Q ss_pred             EEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~---g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++|..+|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|++++
T Consensus        73 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~is  128 (239)
T 2ekp_A           73 VLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIG  128 (239)
T ss_dssp             EEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence            999999865321   12322   334555444    344444444433 46677765

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.65  E-value=0.037  Score=53.58  Aligned_cols=77  Identities=17%  Similarity=0.258  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC---c--hHHHHHHHhcccCCCeEEEEeCC--CChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---N--TPGVTADISHMDTGAVVRGFLGQ--PQLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~---~--~~g~a~DL~~~~~~~~v~~~~~t--~dl~~al~dAD  111 (390)
                      .+.+++.|+|| |++|..++..|+..+ +.+|.+++++   .  +...+.++.... ...++...-.  .++.+++.++|
T Consensus       152 l~gk~~lVlGa-GG~g~aia~~L~~~G-a~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          152 IIGKKMTICGA-GGAATAICIQAALDG-VKEISIFNRKDDFYANAEKTVEKINSKT-DCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHHTCS
T ss_pred             ccCCEEEEECC-ChHHHHHHHHHHHCC-CCEEEEEECCCchHHHHHHHHHHhhhhc-CCceEEeccchHHHHHhhhcCCC
Confidence            45679999999 999999999998876 4689999998   4  333444554322 2345544311  13556788999


Q ss_pred             EEEEcCC
Q 016424          112 LVIIPAG  118 (390)
Q Consensus       112 iVIi~ag  118 (390)
                      +||.+..
T Consensus       229 iIINaTp  235 (315)
T 3tnl_A          229 IFTNATG  235 (315)
T ss_dssp             EEEECSS
T ss_pred             EEEECcc
Confidence            9999754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=95.65  E-value=0.057  Score=49.86  Aligned_cols=114  Identities=12%  Similarity=0.111  Sum_probs=70.7

Q ss_pred             CEEEEEcCC--CCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEe-CCCC---hhhhhC------
Q 016424           42 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (390)
Q Consensus        42 ~KI~VIGa~--G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~al~------  108 (390)
                      ++|.|+||+  |++|..++..|+..+.  +|++.|.+. ......++.......  ..+. .-+|   ..++++      
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~--~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSD--IVLQCDVAEDASIDTMFAELGKVW   85 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCC--CEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCc--EEEEccCCCHHHHHHHHHHHHHHc
Confidence            578999998  8999999999999886  899999876 223334443221111  1111 1122   222232      


Q ss_pred             -CCcEEEEcCCCCCC-----C--C-CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          109 -GMDLVIIPAGVPRK-----P--G-MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       109 -dADiVIi~ag~p~k-----~--g-~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                       ..|++|..+|....     +  . .+.   ...+..|+.-...+.+.+..+- +.+.||+++-
T Consensus        86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence             67999999997542     1  1 222   2356778777777777776653 2467777763

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.64  E-value=0.14  Score=47.60  Aligned_cols=121  Identities=17%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---------HHHHHHHhcccCCCeEEEEeC-CCCh---hhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG-QPQL---ENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---------~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a  106 (390)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+..         ...+.++...  ..++..+.. -+|.   .+.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHH
Confidence            346889999999999999999999886  8999998751         2233333322  234444332 1222   122


Q ss_pred             -------hCCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCccc
Q 016424          107 -------LTGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNST  164 (390)
Q Consensus       107 -------l~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNPvd~~  164 (390)
                             +-..|++|..+|......   .+..   ..+..|+.-...+.+.+..+   ...+.|++++-.....
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  154 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLN  154 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence                   237899999999753321   2222   34556665554454444332   3457788777554443

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.64  E-value=0.036  Score=57.18  Aligned_cols=133  Identities=18%  Similarity=0.184  Sum_probs=80.2

Q ss_pred             CCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh-CCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-~dADiVIi~ag  118 (390)
                      .+||-|||. |+.|.+ +|..|...+.  ++...|..........|...    .++++.|. +. +.+ .++|+||.+.|
T Consensus        19 ~~~i~~iGi-Gg~Gms~lA~~l~~~G~--~V~~sD~~~~~~~~~~L~~~----gi~~~~G~-~~-~~~~~~~d~vV~Spg   89 (524)
T 3hn7_A           19 GMHIHILGI-CGTFMGSLALLARALGH--TVTGSDANIYPPMSTQLEQA----GVTIEEGY-LI-AHLQPAPDLVVVGNA   89 (524)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESCCCTTHHHHHHHT----TCEEEESC-CG-GGGCSCCSEEEECTT
T ss_pred             CCEEEEEEe-cHhhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHC----CCEEECCC-CH-HHcCCCCCEEEECCC
Confidence            469999999 999986 6788888887  89999997522222334432    23333443 32 445 68999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC--cccHHHHHHHHHHhCCCCCCceee
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV--NSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPv--d~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      +|...-+ ......++++++.+. +.+.++ .++..+|-+|=-.  .++|.+++.+++.. ++++.-++|
T Consensus        90 i~~~~p~-l~~a~~~gi~v~~~~-e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~-G~~~~~~iG  156 (524)
T 3hn7_A           90 MKRGMDV-IEYMLDTGLRYTSGP-QFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYA-GIDAGFLIG  156 (524)
T ss_dssp             CCTTSHH-HHHHHHHTCCEEEHH-HHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHT-TCCCEEECS
T ss_pred             cCCCCHH-HHHHHHCCCcEEEHH-HHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHc-CCCceEEEC
Confidence            8853221 112234556666554 223332 3444555565444  46677777877765 555544444

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.62  E-value=0.047  Score=54.36  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=75.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHH--------HHHHHhcccCCCeEEEEeCCCChhhhh
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--------VTADISHMDTGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g--------~a~DL~~~~~~~~v~~~~~t~dl~~al  107 (390)
                      .....||+|+|| |.+|..++..|...+ ..+++++|.+.  ..+        ....+.+.. .. ..   ...++.+++
T Consensus       189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G-~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~~-~~---~~~~L~eav  261 (388)
T 1vl6_A          189 KIEEVKVVVNGI-GAAGYNIVKFLLDLG-VKNVVAVDRKGILNENDPETCLNEYHLEIARIT-NP-ER---LSGDLETAL  261 (388)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHT-CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CT-TC---CCSCHHHHH
T ss_pred             CCCCcEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEECCCcccCCCcccccCHHHHHHHHhh-hc-cC---chhhHHHHH
Confidence            346689999999 999999998887766 47899999983  111        112233221 11 11   135799999


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  187 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t  187 (390)
                      ++||++|-+.+ |   +.-           -+++.+.|   +++.+|+=.+||.--+++   +-.++. |   +.||++.
T Consensus       262 ~~ADVlIG~Sa-p---~l~-----------t~emVk~M---a~~pIIfalSNPt~E~~p---~~a~~~-g---~~i~atG  316 (388)
T 1vl6_A          262 EGADFFIGVSR-G---NIL-----------KPEWIKKM---SRKPVIFALANPVPEIDP---ELAREA-G---AFIVATG  316 (388)
T ss_dssp             TTCSEEEECSC-S---SCS-----------CHHHHTTS---CSSCEEEECCSSSCSSCH---HHHHHT-T---CSEEEES
T ss_pred             ccCCEEEEeCC-C---Ccc-----------CHHHHHhc---CCCCEEEEcCCCCCCCCH---HHHHHh-c---CeEEEeC
Confidence            99999998865 4   321           11333332   367788888999866655   223443 2   4788765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.62  E-value=0.037  Score=51.00  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|.|||+ |.+|...+..|...+.  ++.++|.+.... ..++...   ..++.....-+ ++.+.++|+||.+.+
T Consensus        29 L~gk~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~~~-l~~l~~~---~~i~~i~~~~~-~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           29 LKGRSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVSAE-INEWEAK---GQLRVKRKKVG-EEDLLNVFFIVVATN  100 (223)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCCHH-HHHHHHT---TSCEEECSCCC-GGGSSSCSEEEECCC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCCHH-HHHHHHc---CCcEEEECCCC-HhHhCCCCEEEECCC
Confidence            34569999999 9999999998888775  789999764222 2334332   23443333323 467999999999865


Q ss_pred             CC
Q 016424          119 VP  120 (390)
Q Consensus       119 ~p  120 (390)
                      .+
T Consensus       101 d~  102 (223)
T 3dfz_A          101 DQ  102 (223)
T ss_dssp             CT
T ss_pred             CH
Confidence            55

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.59  E-value=0.0084  Score=55.44  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEcCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIPAG  118 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~ag  118 (390)
                      ||.|+||+|++|+.++..|.......+++++|.+.....  ++.+.    .++.+.+.    .++.++++++|+||..++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ--ALAAQ----GITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH--HHHHT----TCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh--hhhcC----CCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            589999999999999998887711237899998752111  12111    12222221    245678899999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+.          ..|+...+.+.+.+.+.... .++.+|
T Consensus        75 ~~~----------~~~~~~~~~l~~a~~~~~~~-~~v~~S  103 (286)
T 2zcu_A           75 SEV----------GQRAPQHRNVINAAKAAGVK-FIAYTS  103 (286)
T ss_dssp             -----------------CHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             CCc----------hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            531          13555666777777766533 344443

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.59  E-value=0.01  Score=54.12  Aligned_cols=112  Identities=13%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh---------CCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL---------TGM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al---------~dA  110 (390)
                      ++++|.|+||+|++|..++..|+..+.  +|++.|.+..... ... + ....++.-   ..+..+++         ...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~-~~~-~-~~~~D~~~---~~~v~~~~~~~~~~~~~g~i   77 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEA-SAS-V-IVKMTDSF---TEQADQVTAEVGKLLGDQKV   77 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTS-SEE-E-ECCCCSCH---HHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhcc-CCc-E-EEEcCCCC---HHHHHHHHHHHHHHhCCCCC
Confidence            456899999999999999999999886  8999998762110 000 0 00111110   01122222         378


Q ss_pred             cEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          111 DLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       111 DiVIi~ag~p~k~----g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                      |++|..+|.....    ..+.   ...+..|+.-...+.+.+..+- ..+.|++++-
T Consensus        78 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           78 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            9999999864321    1111   2345667666666666665542 2467777753

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.58  E-value=0.15  Score=47.59  Aligned_cols=78  Identities=12%  Similarity=0.089  Sum_probs=50.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h--HHHHHHHhcccCCCeEEEEeC-CCC----h---hhh---
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTGAVVRGFLG-QPQ----L---ENA---  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~--~g~a~DL~~~~~~~~v~~~~~-t~d----l---~~a---  106 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+. .  .....++.... ..++..+.+ -+|    .   .++   
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKER-SNTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhc-CCceEEEEeecCCccCCHHHHHHHHHH
Confidence            35788999999999999999998876  899999986 2  23334443111 233443322 123    1   112   


Q ss_pred             ----hCCCcEEEEcCCCCC
Q 016424          107 ----LTGMDLVIIPAGVPR  121 (390)
Q Consensus       107 ----l~dADiVIi~ag~p~  121 (390)
                          +...|++|..+|...
T Consensus       100 ~~~~~g~iD~lvnnAG~~~  118 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASAFY  118 (288)
T ss_dssp             HHHHHSCCCEEEECCCCCC
T ss_pred             HHHhcCCCCEEEECCCCCC
Confidence                237899999998643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.57  E-value=0.054  Score=50.04  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      .+++.|.||+|++|..++..|+..+.  ++++. +.+.  ......++....  .++..+.+ -+|   .+++++     
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45889999999999999999999886  78887 5544  233344454332  23333322 123   222232     


Q ss_pred             --CCcEEEEcCCCC--CCC--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          109 --GMDLVIIPAGVP--RKP--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p--~k~--g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                        ..|++|..+|..  ..+  ..+.   ...+..|+.-...+.+.+..+- +.+.|++++
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence              789999998854  222  2233   2346677777777777766553 245677665

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.56  E-value=0.22  Score=48.43  Aligned_cols=120  Identities=19%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---------HHHHHHHhcccCCCeEEEEeC-CCCh---hhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG-QPQL---ENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---------~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a  106 (390)
                      +.+.|.|+||+|+||..++..|+..+.  +|++.|.+..         ...+.++....  .++..+.. -+|.   .++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHH
Confidence            346789999999999999999999886  8999998762         13344444322  34444322 1222   222


Q ss_pred             h-------CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCcc
Q 016424          107 L-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNS  163 (390)
Q Consensus       107 l-------~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNPvd~  163 (390)
                      +       -..|++|..+|.....   ..+.   ...+..|+.-...+.+.+..+   ...+.||+++-+...
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~  192 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNL  192 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHc
Confidence            2       3789999999864322   1222   234666766555555555433   345778888765543

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.55  E-value=0.071  Score=49.35  Aligned_cols=115  Identities=13%  Similarity=0.196  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-----
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-----  107 (390)
                      +.+.+.|+||+|++|..++..|+..+.  .+++.|.+.   ......++...  ..++..+.. -+|.   .+++     
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDVADFESCERCAEKVLA   99 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            345678889999999999999999886  889998654   22223333322  233444332 1232   2222     


Q ss_pred             --CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tN  159 (390)
                        ..-|++|..+|.....   ..+..   ..+..|+.-...+.+.    +.+. ..+.|++++-
T Consensus       100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS  162 (269)
T 3gk3_A          100 DFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGS  162 (269)
T ss_dssp             HHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence              2789999999875422   12332   3355565444444443    3333 3566777653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.54  E-value=0.13  Score=47.66  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.+.
T Consensus        30 ~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           30 GASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            35788999999999999999999886  899999986

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.50  E-value=0.023  Score=53.82  Aligned_cols=76  Identities=20%  Similarity=0.298  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc---CCCeEEEEeCCCChhhhhCCCcEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~---~~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      +.+++.|+|| |++|..++..|+..+   +|+++|.+.  +...+.++....   ....+...    ++.+.+.++|+||
T Consensus       127 ~~k~vlV~Ga-GgiG~aia~~L~~~G---~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~----~~~~~~~~~DilV  198 (287)
T 1nvt_A          127 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS----GLDVDLDGVDIII  198 (287)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE----CTTCCCTTCCEEE
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe----eHHHhhCCCCEEE
Confidence            4568999999 899999999998887   899999976  334444443210   00123321    2356788999999


Q ss_pred             EcCCCCCCC
Q 016424          115 IPAGVPRKP  123 (390)
Q Consensus       115 i~ag~p~k~  123 (390)
                      .++|.+..+
T Consensus       199 n~ag~~~~~  207 (287)
T 1nvt_A          199 NATPIGMYP  207 (287)
T ss_dssp             ECSCTTCTT
T ss_pred             ECCCCCCCC
Confidence            999876543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.49  E-value=0.089  Score=50.59  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEe-CCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~D-i~~   77 (390)
                      +++.|.||+|++|..++..|+..+.  +|++.| .+.
T Consensus        47 k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           47 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4788889999999999999999886  899999 775

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.48  E-value=0.067  Score=49.10  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------  108 (390)
                      ++++.|+||+|++|..++..|+..+.  ++++.+.+..  .....++.... ..++..+... +|   ..++++      
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999886  8888877652  22222222211 2344444321 23   222333      


Q ss_pred             -CCcEEEEcCCC--CC-CC--CCCHH---HHHHHHHHHHHHHHHH----HHHhCCCcEEEEec
Q 016424          109 -GMDLVIIPAGV--PR-KP--GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLIS  158 (390)
Q Consensus       109 -dADiVIi~ag~--p~-k~--g~~r~---~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~t  158 (390)
                       ..|+||..+|.  .. .+  ..+..   ..+..|+.-...+.+.    +.+.. .+.|++++
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~is  145 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYG  145 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEe
Confidence             78999999983  22 11  12322   3455565444444444    44443 46666665

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=95.48  E-value=0.017  Score=55.97  Aligned_cols=93  Identities=20%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+...     .      ..+..+.+..++++.+++||+|++..-
T Consensus       137 l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~-----~------~~~~~~~~~~~l~ell~~aDiV~l~~P  202 (315)
T 3pp8_A          137 REEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKS-----W------PGVESYVGREELRAFLNQTRVLINLLP  202 (315)
T ss_dssp             STTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCC-----C------TTCEEEESHHHHHHHHHTCSEEEECCC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchh-----h------hhhhhhcccCCHHHHHhhCCEEEEecC
Confidence            34679999999 9999999999987776  89999987521     0      011111223478899999999999853


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          119 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       119 ~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      . +.-.++     +  |       .+.+....|++++|+++.
T Consensus       203 lt~~t~~l-----i--~-------~~~l~~mk~gailIN~aR  230 (315)
T 3pp8_A          203 NTAQTVGI-----I--N-------SELLDQLPDGAYVLNLAR  230 (315)
T ss_dssp             CCGGGTTC-----B--S-------HHHHTTSCTTEEEEECSC
T ss_pred             Cchhhhhh-----c--c-------HHHHhhCCCCCEEEECCC
Confidence            1 211121     1  0       123444568999999974

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.47  E-value=0.04  Score=54.12  Aligned_cols=74  Identities=22%  Similarity=0.353  Sum_probs=50.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLG   99 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~   99 (390)
                      ..||.|||+ |++|+.++..|+..+ +.+|.|+|.+.                     +...+..|.......+++.+..
T Consensus       118 ~~~VlvvG~-GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  195 (353)
T 3h5n_A          118 NAKVVILGC-GGIGNHVSVILATSG-IGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL  195 (353)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHT-CSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCC-CCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeec
Confidence            459999999 999999999999887 57899999874                     1122333444433345555432


Q ss_pred             C---C-ChhhhhCCCcEEEEcC
Q 016424          100 Q---P-QLENALTGMDLVIIPA  117 (390)
Q Consensus       100 t---~-dl~~al~dADiVIi~a  117 (390)
                      .   . ++.+ ++++|+||.+.
T Consensus       196 ~i~~~~~~~~-~~~~DlVvd~~  216 (353)
T 3h5n_A          196 NINDYTDLHK-VPEADIWVVSA  216 (353)
T ss_dssp             CCCSGGGGGG-SCCCSEEEECC
T ss_pred             ccCchhhhhH-hccCCEEEEec
Confidence            1   1 1445 89999999875

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.44  E-value=0.021  Score=55.78  Aligned_cols=94  Identities=24%  Similarity=0.341  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-..++|+|||. |.+|+.++..+...+.  ++..||.+.....+.++     ..  +.    .++++.+++||+|++..
T Consensus       162 ~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-----g~--~~----~~l~ell~~aDvV~l~~  227 (335)
T 2g76_A          162 ELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF-----GV--QQ----LPLEEIWPLCDFITVHT  227 (335)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT-----TC--EE----CCHHHHGGGCSEEEECC
T ss_pred             CCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-----Cc--ee----CCHHHHHhcCCEEEEec
Confidence            345679999999 9999999999887665  89999987633222221     11  21    25778999999999985


Q ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          118 GVP-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       118 g~p-~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ... .-.++     +  |       .+.+....|++++|+++-
T Consensus       228 P~t~~t~~l-----i--~-------~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          228 PLLPSTTGL-----L--N-------DNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCCTTTTTS-----B--C-------HHHHTTSCTTEEEEECSC
T ss_pred             CCCHHHHHh-----h--C-------HHHHhhCCCCcEEEECCC
Confidence            322 11111     1  0       123444568899999864

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.43  E-value=0.018  Score=60.42  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~   76 (390)
                      ..||.|||+ |++|+.++..|+..| +.+|.|+|-|
T Consensus       327 ~~kVLIVGa-GGLGs~va~~La~aG-VG~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGA-GTLGCYVSRALIAWG-VRKITFVDNG  360 (598)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTT-CCEEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcC-CCEEEEECCC
Confidence            349999999 999999999999888 5799999987

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.43  E-value=0.014  Score=55.90  Aligned_cols=94  Identities=24%  Similarity=0.285  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+.....           .++.   .+++++.+++||+|++...
T Consensus       120 l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----------~~~~---~~~l~ell~~aDiV~l~~P  182 (290)
T 3gvx_A          120 LYGKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQN-----------VDVI---SESPADLFRQSDFVLIAIP  182 (290)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTT-----------CSEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eecchheeecc-CchhHHHHHHHHhhCc--EEEEEeccccccc-----------cccc---cCChHHHhhccCeEEEEee
Confidence            44579999999 9999999999987776  9999998752100           0222   3478899999999999863


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 016424          119 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  163 (390)
Q Consensus       119 ~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~  163 (390)
                      . |.-.++-       |       ...+....|++++|+++  .++|.
T Consensus       183 ~t~~t~~li-------~-------~~~l~~mk~gailIN~aRG~~vd~  216 (290)
T 3gvx_A          183 LTDKTRGMV-------N-------SRLLANARKNLTIVNVARADVVSK  216 (290)
T ss_dssp             CCTTTTTCB-------S-------HHHHTTCCTTCEEEECSCGGGBCH
T ss_pred             ccccchhhh-------h-------HHHHhhhhcCceEEEeehhcccCC
Confidence            2 2222221       0       12234456899999996  44443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.41  E-value=0.025  Score=55.11  Aligned_cols=66  Identities=26%  Similarity=0.334  Sum_probs=49.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+.....+.++       .++.   . ++.+.+++||+|+++..
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~---~-~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KARY---M-DIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee---c-CHHHHHhhCCEEEEcCC
Confidence            45679999999 9999999999887776  89999998633222222       1222   2 67788999999999864

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.39  E-value=0.025  Score=55.56  Aligned_cols=93  Identities=25%  Similarity=0.297  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.||+.++..+...+.  ++..||.........   .     ..+.   ..++.+.+++||+|++...
T Consensus       171 l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~---~-----g~~~---~~~l~ell~~sDvV~l~~P  236 (345)
T 4g2n_A          171 LTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALE---E-----GAIY---HDTLDSLLGASDIFLIAAP  236 (345)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH---T-----TCEE---CSSHHHHHHTCSEEEECSC
T ss_pred             cCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhh---c-----CCeE---eCCHHHHHhhCCEEEEecC
Confidence            44579999999 9999999999987776  899999875211111   1     1121   2478899999999999863


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          119 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       119 ~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      . |.-.++     +  |       .+.+....|++++|+++-
T Consensus       237 lt~~T~~l-----i--~-------~~~l~~mk~gailIN~aR  264 (345)
T 4g2n_A          237 GRPELKGF-----L--D-------HDRIAKIPEGAVVINISR  264 (345)
T ss_dssp             CCGGGTTC-----B--C-------HHHHHHSCTTEEEEECSC
T ss_pred             CCHHHHHH-----h--C-------HHHHhhCCCCcEEEECCC
Confidence            2 211121     0  1       123444568999999963

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.39  E-value=0.019  Score=55.24  Aligned_cols=93  Identities=22%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+.....+.++   .    ++.    .++.+.+++||+|++...
T Consensus       140 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~p  205 (307)
T 1wwk_A          140 LEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIHVP  205 (307)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEECCC
T ss_pred             cCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEecC
Confidence            45679999999 9999999999987775  89999997633222221   1    121    157788999999999853


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          119 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       119 ~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      . +.-.+.     +  |       ...+....|++++++++-
T Consensus       206 ~~~~t~~l-----i--~-------~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          206 LVESTYHL-----I--N-------EERLKLMKKTAILINTSR  233 (307)
T ss_dssp             CSTTTTTC-----B--C-------HHHHHHSCTTCEEEECSC
T ss_pred             CChHHhhh-----c--C-------HHHHhcCCCCeEEEECCC
Confidence            2 211111     1  1       122334468899999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.37  E-value=0.014  Score=57.13  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .||.|||+ |++|+.++..|+..+ +.+|.|+|.+.
T Consensus        35 ~~VlIvGa-GGlGs~va~~La~aG-Vg~ItlvD~D~   68 (340)
T 3rui_A           35 TKVLLLGA-GTLGCYVSRALIAWG-VRKITFVDNGT   68 (340)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCB
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcC-CCEEEEecCCE
Confidence            49999999 999999999999988 47899999864

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.36  E-value=0.036  Score=53.71  Aligned_cols=68  Identities=18%  Similarity=0.314  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLV  113 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiV  113 (390)
                      .+++||+|||+ |.+|...+..+... +-+.-+.++|.+..  ...+..+       .++.+   +|+++.++  ++|+|
T Consensus        11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-------~~~~~---~~~~~ll~~~~~D~V   79 (354)
T 3q2i_A           11 DRKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-------GARGH---ASLTDMLAQTDADIV   79 (354)
T ss_dssp             SSCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-------CCEEE---SCHHHHHHHCCCSEE
T ss_pred             CCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-------CCcee---CCHHHHhcCCCCCEE
Confidence            45689999999 99999999888876 43333558999862  2222222       13443   47778776  89999


Q ss_pred             EEcC
Q 016424          114 IIPA  117 (390)
Q Consensus       114 Ii~a  117 (390)
                      +++.
T Consensus        80 ~i~t   83 (354)
T 3q2i_A           80 ILTT   83 (354)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9975

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.36  E-value=0.018  Score=51.83  Aligned_cols=94  Identities=16%  Similarity=0.127  Sum_probs=57.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-C---CChhhhhC------CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALT------GM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t---~dl~~al~------dA  110 (390)
                      .++|.|+||+|++|..++..|+..+.  ++++.|.+..      +.+.      ..+.+ -   .++.++++      +.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~------~~~~------~~~~~D~~~~~~~~~~~~~~~~~~~~   67 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE------GEDL------IYVEGDVTREEDVRRAVARAQEEAPL   67 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC------SSSS------EEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc------ccce------EEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence            35899999999999999999988876  8999998752      1110      11111 1   12233343      78


Q ss_pred             cEEEEcCCCCCCCC---C-------CHHHHHHHHHHHHHHHHHHHHHh
Q 016424          111 DLVIIPAGVPRKPG---M-------TRDDLFNINAGIVRTLCEGIAKC  148 (390)
Q Consensus       111 DiVIi~ag~p~k~g---~-------~r~~l~~~N~~ii~~ia~~I~~~  148 (390)
                      |+||..+|......   .       .-...+..|+.-...+.+.+.+.
T Consensus        68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  115 (242)
T 1uay_A           68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWA  115 (242)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999988654221   1       12344566665555555555443

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=95.32  E-value=0.023  Score=53.39  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC--CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhC--CCcEEE
Q 016424           43 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALT--GMDLVI  114 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~--~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~--dADiVI  114 (390)
                      ||.|+||+|++|+.++..|...  +.  ++++.|.......     .      +..+.+.    .++.++++  ++|+||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~------~~~~~~D~~d~~~~~~~~~~~~~d~vi   67 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----G------IKFITLDVSNRDEIDRAVEKYSIDAIF   67 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----T------CCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----C------ceEEEecCCCHHHHHHHHhhcCCcEEE
Confidence            5899999999999999888776  43  7888887651110     0      1111111    23445666  899999


Q ss_pred             EcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~g-~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -+++...... ....+.+..|+.-...+.+.+.+.... .++++|
T Consensus        68 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  111 (317)
T 3ajr_A           68 HLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPS  111 (317)
T ss_dssp             ECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             ECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEec
Confidence            9998642111 233456778888888888888876543 444443

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.32  E-value=0.056  Score=49.59  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEcCC--CCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC--
Q 016424           38 GAAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~--G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~--  108 (390)
                      ..+.++|.|+||+  |++|..++..|+..+.  +|++.|.++ ......++.....  .+..+.. -+|   ..+.++  
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~   86 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASL   86 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHH
Confidence            4456799999998  8999999999999886  899999886 2333333432111  1222221 122   222232  


Q ss_pred             -----CCcEEEEcCCCCCC-----C--C-CCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          109 -----GMDLVIIPAGVPRK-----P--G-MTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       109 -----dADiVIi~ag~p~k-----~--g-~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                           .-|++|..+|....     +  . .+..   ..+..|+.-...+.+.+..+- +.+.|++++
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           87 KTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence                 56999999986532     1  1 2322   345667666666666665543 356677665

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.31  E-value=0.081  Score=54.08  Aligned_cols=129  Identities=12%  Similarity=0.197  Sum_probs=74.9

Q ss_pred             CCCCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .+.+||.|||. |+.|.+ +|..|...+.  ++..+|..+.. ....|...    .++++.|. + .+.+.++|+||++.
T Consensus        20 ~~~~~v~viGi-G~sG~s~~A~~l~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~g~-~-~~~~~~~d~vV~Sp   89 (494)
T 4hv4_A           20 RRVRHIHFVGI-GGAGMGGIAEVLANEGY--QISGSDLAPNS-VTQHLTAL----GAQIYFHH-R-PENVLDASVVVVST   89 (494)
T ss_dssp             --CCEEEEETT-TSTTHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHT----TCEEESSC-C-GGGGTTCSEEEECT
T ss_pred             ccCCEEEEEEE-cHhhHHHHHHHHHhCCC--eEEEEECCCCH-HHHHHHHC----CCEEECCC-C-HHHcCCCCEEEECC
Confidence            34579999999 999986 8999998887  89999987622 12234432    23344442 3 35689999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcccHHHHHHHHHHhCCCCC
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      |+|...-+ -.....++++++.++ +.+.+......+|-+|  |==.++|.+++.+++.. ++++
T Consensus        90 gi~~~~p~-~~~a~~~gi~v~~~~-e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~-g~~~  151 (494)
T 4hv4_A           90 AISADNPE-IVAAREARIPVIRRA-EMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEA-GLDP  151 (494)
T ss_dssp             TSCTTCHH-HHHHHHTTCCEEEHH-HHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHT-TCCC
T ss_pred             CCCCCCHH-HHHHHHCCCCEEcHH-HHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhc-CCCC
Confidence            98863211 111122334443221 1112222233344454  44446677777777665 4543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.31  E-value=0.026  Score=52.60  Aligned_cols=67  Identities=21%  Similarity=0.328  Sum_probs=48.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+. ||+|||+ |++|..++..|...+.  ++.++|.+..  ...+.++.     ..   +   +++.++ +++|+||++
T Consensus       115 l~~-~v~iiG~-G~~g~~~a~~l~~~g~--~v~v~~r~~~~~~~l~~~~~-----~~---~---~~~~~~-~~~Divi~~  178 (263)
T 2d5c_A          115 LKG-PALVLGA-GGAGRAVAFALREAGL--EVWVWNRTPQRALALAEEFG-----LR---A---VPLEKA-REARLLVNA  178 (263)
T ss_dssp             CCS-CEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHT-----CE---E---CCGGGG-GGCSEEEEC
T ss_pred             CCC-eEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cc---h---hhHhhc-cCCCEEEEc
Confidence            345 8999999 9999999999988885  8999999752  22332222     11   2   256677 999999998


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      .+.+.
T Consensus       179 tp~~~  183 (263)
T 2d5c_A          179 TRVGL  183 (263)
T ss_dssp             SSTTT
T ss_pred             cCCCC
Confidence            76543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.30  E-value=0.15  Score=47.97  Aligned_cols=116  Identities=10%  Similarity=0.074  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCCCC--cHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-----
Q 016424           40 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~--vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-----  107 (390)
                      +.+++.|+||+|+  +|..++..|+..+.  +|++.|.++ ......++....  ..+..+.. -+|   .++++     
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHHH
Confidence            3458899999866  99999999999886  799999886 222233333211  12333221 122   22222     


Q ss_pred             --CCCcEEEEcCCCCC-----CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          108 --TGMDLVIIPAGVPR-----KP--GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       108 --~dADiVIi~ag~p~-----k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                        -..|++|..+|...     .+  ..+..   ..+..|+.-...+.+.+..+- ..+.||+++-
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence              37899999999753     11  12322   346677766666666665543 3577777763

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.26  E-value=0.057  Score=49.35  Aligned_cols=118  Identities=16%  Similarity=0.169  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEe-CCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh---
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL---  107 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~D-i~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al---  107 (390)
                      ..++++|.|+||+|++|..++..|+..+.  ++++.| .+.  ......++....  .++..+.+ -+|   .++++   
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~   85 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFDKV   85 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHHHH
Confidence            44567889999999999999999999886  788887 433  333444444332  23333221 122   22223   


Q ss_pred             ----CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 016424          108 ----TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       108 ----~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                          ...|++|..+|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|++++-.
T Consensus        86 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~  151 (256)
T 3ezl_A           86 KAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSV  151 (256)
T ss_dssp             HHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred             HHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcch
Confidence                3679999999875422   12322   345556554    444445455444 4667777643

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=95.26  E-value=0.14  Score=47.26  Aligned_cols=116  Identities=17%  Similarity=0.189  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh---
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL---  107 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al---  107 (390)
                      +.+.+.|.||+|++|..++..|+..+.  ++++.|...     +.....++...  ..++..+... +|.   .+.+   
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   85 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFA   85 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            345789999999999999999999886  889988753     22334444432  2345444321 232   2222   


Q ss_pred             ----CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          108 ----TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       108 ----~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                          ...|++|..+|......   .+..   ..+..|+.-...+.+.+..+- +.+.|++++-
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence                36899999999754322   2222   345677777667777666542 4566777754

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.26  E-value=0.011  Score=53.71  Aligned_cols=110  Identities=15%  Similarity=0.065  Sum_probs=65.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh---------CCCcE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL---------TGMDL  112 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al---------~dADi  112 (390)
                      ++|.|+||+|++|..++..|+..+.  +|++.|.+..... ... + ....++.-   ..+..+++         .+.|+
T Consensus         4 k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~-~~~-~-~~~~D~~~---~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQA-DSN-I-LVDGNKNW---TEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTS-SEE-E-ECCTTSCH---HHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccc-ccc-E-EEeCCCCC---HHHHHHHHHHHHHHhCCCCCCE
Confidence            5799999999999999999999885  8999998762110 000 0 00011110   01112222         37899


Q ss_pred             EEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          113 VIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       113 VIi~ag~p~k~----g~~---r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                      ||..+|.....    ..+   -...+..|+.-...+.+.+..+- ..+.|++++-
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  130 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  130 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECc
Confidence            99999864321    111   12346677777666666666553 2467777753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.26  E-value=0.054  Score=52.35  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC---c--hHHHHHHHhcccCCCeEEEEeCCCCh---hhhhCCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---N--TPGVTADISHMDTGAVVRGFLGQPQL---ENALTGM  110 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~---~--~~g~a~DL~~~~~~~~v~~~~~t~dl---~~al~dA  110 (390)
                      .+..++.|+|| |++|..++..|...+ +.+|.+++++   .  +...+.++... ....+.... ..++   .+.+.++
T Consensus       146 l~gk~~lVlGA-GGaaraia~~L~~~G-~~~v~v~nRt~~~~~~a~~la~~~~~~-~~~~v~~~~-~~~l~~~~~~l~~~  221 (312)
T 3t4e_A          146 MRGKTMVLLGA-GGAATAIGAQAAIEG-IKEIKLFNRKDDFFEKAVAFAKRVNEN-TDCVVTVTD-LADQHAFTEALASA  221 (312)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEECSSTHHHHHHHHHHHHHHH-SSCEEEEEE-TTCHHHHHHHHHHC
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHcC-CCEEEEEECCCchHHHHHHHHHHhhhc-cCcceEEec-hHhhhhhHhhccCc
Confidence            45679999999 999999999998876 4689999998   3  23344445432 224455443 2343   5678899


Q ss_pred             cEEEEcCC
Q 016424          111 DLVIIPAG  118 (390)
Q Consensus       111 DiVIi~ag  118 (390)
                      |+||.+..
T Consensus       222 DiIINaTp  229 (312)
T 3t4e_A          222 DILTNGTK  229 (312)
T ss_dssp             SEEEECSS
T ss_pred             eEEEECCc
Confidence            99999753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.24  E-value=0.029  Score=55.45  Aligned_cols=78  Identities=23%  Similarity=0.189  Sum_probs=53.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ..++.+|.|+|+ |.+|..++..++..+.  ++..+|.+.. ...+.+..  .....+. .....++.+.++++|+||.+
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~--g~~~~~~-~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEF--CGRIHTR-YSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--TTSSEEE-ECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhc--CCeeEec-cCCHHHHHHHHcCCCEEEEC
Confidence            345689999999 9999999999988886  8999999862 22222211  1111111 11123567788999999999


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      .+.|.
T Consensus       239 ~~~p~  243 (377)
T 2vhw_A          239 VLVPG  243 (377)
T ss_dssp             CCCTT
T ss_pred             CCcCC
Confidence            88775

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.22  E-value=0.045  Score=52.06  Aligned_cols=98  Identities=20%  Similarity=0.255  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ..+.++|.|||+ |.+|..++..+...+.  ++..||.+....  ..+...  ...+  +. ..++.+.+++||+|+++.
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~d~~~~~~--~~~~~~--g~~~--~~-~~~l~~~l~~aDvVi~~~  223 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGA--NVKVGARSSAHL--ARITEM--GLVP--FH-TDELKEHVKDIDICINTI  223 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHT--TCEE--EE-GGGHHHHSTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHC--CCeE--Ec-hhhHHHHhhCCCEEEECC
Confidence            345689999999 9999999999988776  899999975211  112111  1222  11 246788899999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCcc
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  163 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPvd~  163 (390)
                      ..    ++-       |.       ..+....|++++++++ .|.++
T Consensus       224 p~----~~i-------~~-------~~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          224 PS----MIL-------NQ-------TVLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             SS----CCB-------CH-------HHHTTSCTTCEEEECSSTTCSB
T ss_pred             Ch----hhh-------CH-------HHHHhCCCCCEEEEEeCCCCCc
Confidence            53    221       10       1233445889999886 67664

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.21  E-value=0.041  Score=52.73  Aligned_cols=35  Identities=34%  Similarity=0.559  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..||.|||+ |++|+.++..|+..+ +.+|.|+|-|.
T Consensus        36 ~~~VlVvGa-GGlGs~va~~La~aG-VG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGV-GGVGSVTAEMLTRCG-IGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHHT-CSEEEEECCCB
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHcC-CCEEEEECCCc
Confidence            459999999 999999999998877 46899999875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.20  E-value=0.0057  Score=57.19  Aligned_cols=111  Identities=19%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH--H---HHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--V---TADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g--~---a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      .++|.|.||+|++|..++..|+..+.  +|++.|.+....  .   ..|+.+..   .+...  -....+.+...|++|.
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEEE
Confidence            45788889999999999999999886  899999875110  0   01111100   00000  0011233457899999


Q ss_pred             cCCCCCCCC---CCHH---HHHHHHHHHHHHHH----HHHHHhCCCcEEEEecC
Q 016424          116 PAGVPRKPG---MTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLISN  159 (390)
Q Consensus       116 ~ag~p~k~g---~~r~---~l~~~N~~ii~~ia----~~I~~~~p~a~iiv~tN  159 (390)
                      .+|......   .+..   ..+..|+.-...++    +.+.+.. .+.||+++-
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS  153 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVAS  153 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence            999754221   2222   33555654444444    4444443 566777654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.16  E-value=0.012  Score=56.85  Aligned_cols=88  Identities=17%  Similarity=0.154  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ...++|+|||. |.+|..++..+...+.  ++..||.+.....            +.    ..++.+.++.||+|+++..
T Consensus       142 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------------~~----~~~l~ell~~aDvV~l~~p  202 (311)
T 2cuk_A          142 LQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------------YP----FLSLEELLKEADVVSLHTP  202 (311)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------------SC----BCCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------------cc----cCCHHHHHhhCCEEEEeCC
Confidence            45679999999 9999999999987776  8999998752110            11    1367788999999999753


Q ss_pred             CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          119 VP-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       119 ~p-~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .. .-.+.            +.  ...+....|++++++++.
T Consensus       203 ~~~~t~~l------------i~--~~~l~~mk~ga~lin~sr  230 (311)
T 2cuk_A          203 LTPETHRL------------LN--RERLFAMKRGAILLNTAR  230 (311)
T ss_dssp             CCTTTTTC------------BC--HHHHTTSCTTCEEEECSC
T ss_pred             CChHHHhh------------cC--HHHHhhCCCCcEEEECCC
Confidence            21 11111            10  022333458899998874

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.15  E-value=0.09  Score=53.36  Aligned_cols=93  Identities=18%  Similarity=0.151  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ....++|+|+|. |.||..++..+...+.  ++..+|++.... .+..  +   .  .+.    .+++++++.||+|+.+
T Consensus       244 ~L~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A~~--~---G--~~v----v~LeElL~~ADIVv~a  309 (464)
T 3n58_A          244 MMAGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQAAM--D---G--FEV----VTLDDAASTADIVVTT  309 (464)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHH--T---T--CEE----CCHHHHGGGCSEEEEC
T ss_pred             cccCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHHHh--c---C--cee----ccHHHHHhhCCEEEEC
Confidence            455679999999 9999999999988776  899999986221 1111  1   1  121    2578999999999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      .|.+   ++-.              .+.+...-|+++++|++...
T Consensus       310 tgt~---~lI~--------------~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          310 TGNK---DVIT--------------IDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             CSSS---SSBC--------------HHHHHHSCTTEEEEECSSST
T ss_pred             CCCc---cccC--------------HHHHhcCCCCeEEEEcCCCC
Confidence            6532   1100              23344557899999998654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.11  E-value=0.026  Score=56.59  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCe---------EEEEeC--------
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAV---------VRGFLG--------   99 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~---------v~~~~~--------   99 (390)
                      ..++.||+|||+ |.+|...+..+...+.  ++..+|++. ....+.++.-......         ...++.        
T Consensus       187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~  263 (405)
T 4dio_A          187 TVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV  263 (405)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhh
Confidence            356789999999 9999999998887776  899999987 3334444321000000         011110        


Q ss_pred             --CCChhhhhCCCcEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          100 --QPQLENALTGMDLVIIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       100 --t~dl~~al~dADiVIi~ag~p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                        ..++.+++++||+||.++..|-+  |..-.              .+.++...|+++|+.++
T Consensus       264 ~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt--------------~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          264 KQAALVAEHIAKQDIVITTALIPGRPAPRLVT--------------REMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCCSSSCCCCCBC--------------HHHHTTSCTTCEEEETT
T ss_pred             hhHhHHHHHhcCCCEEEECCcCCCCCCCEEec--------------HHHHhcCCCCCEEEEEe
Confidence              02567889999999999877642  22110              13344456888888776

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.11  E-value=0.031  Score=54.98  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~  116 (390)
                      .++++|.|+|+ |.+|..++..+...+.  ++.++|.+.. ...+.+.  ..  ..+... ....++.+.++++|+||.+
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~--~g--~~~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDV--FG--GRVITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TT--TSEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHh--cC--ceEEEecCCHHHHHHHHhCCCEEEEC
Confidence            45689999999 9999999999988886  8999999862 2222221  11  122211 1123566788999999999


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      +|.+.
T Consensus       237 ~g~~~  241 (369)
T 2eez_A          237 VLVPG  241 (369)
T ss_dssp             CC---
T ss_pred             CCCCc
Confidence            88763

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.10  E-value=0.014  Score=61.25  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..||.|||+ |++|+.++..|+..| +.+|.|+|-+.
T Consensus       326 ~arVLIVGa-GGLGs~vA~~La~aG-VG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGA-GTLGCYVSRALIAWG-VRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCB
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCC
Confidence            359999999 999999999999988 47999999874

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.08  E-value=0.039  Score=52.39  Aligned_cols=67  Identities=12%  Similarity=0.227  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      +++||+|||+ |.+|.. ++..+...+-+.-+.++|.+..  ...+....     ...     .+|+++.++++|+|+++
T Consensus         5 ~~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----~~~-----~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            5 KNIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR-----IMP-----FDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CCCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT-----CCB-----CSCHHHHHTTCSEEEEC
T ss_pred             ccCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC-----CCC-----cCCHHHHHhcCCEEEEe
Confidence            3579999999 999996 7777766554333448999862  22332221     111     24788888999999998


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      .
T Consensus        74 t   74 (308)
T 3uuw_A           74 S   74 (308)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.08  E-value=0.12  Score=48.14  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=67.2

Q ss_pred             CCEEEEEcCC--CCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424           41 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (390)
Q Consensus        41 ~~KI~VIGa~--G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------  107 (390)
                      .++|.|+||+  +++|..++..|+..+.  +|++.|.+.......++.....  .+..+.. -+|   ..+++       
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHHHHc
Confidence            4688999998  4599999999999886  8999999863334444533221  2222221 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---C-----CCHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKP---G-----MTRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~---g-----~~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~tN  159 (390)
                      ..-|++|..+|.....   +     .+..   ..+..|+.-...+.+.+..+-  ..+.|++++-
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS  166 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTY  166 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            3569999999975421   1     2222   345566555555555544331  2566777653

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.08  E-value=0.04  Score=51.14  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di   75 (390)
                      ..|||+|||+ |.+|.+++..|...+.  +|+.||.
T Consensus         5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~--~V~~~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDD-GSSTVNMAEKLDSVGH--YVTVLHA   37 (232)
T ss_dssp             CCCEEEEECC-SCCCSCHHHHHHHTTC--EEEECSS
T ss_pred             CCcEEEEEee-CHHHHHHHHHHHHCCC--EEEEecC
Confidence            4579999999 9999999999999887  8999987

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.06  E-value=0.0065  Score=57.75  Aligned_cols=152  Identities=16%  Similarity=0.190  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +++||+|+||+|.+|+.++..+...+-+.=+..+|.+.......|+..... ...+..   ++|+++.++++|+||-...
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v---~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL---TDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC---BCCHHHHHHHCSEEEECSC
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCcee---cCCHHHHhcCCCEEEEcCC
Confidence            368999999879999999998888764433445787642111223332211 123332   3588888999999988641


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-cccc---HHHH
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD---VVRA  194 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Ld---s~R~  194 (390)
                       |               ....+.++.+.++.-+  +++-|..  ....-. +.++++..-- .-+++- -.+-   -.+|
T Consensus        83 -p---------------~a~~~~~~~al~~G~~--vVigTTG--~s~~~~-~~L~~aa~~~-~vv~a~N~s~Gv~l~~~~  140 (272)
T 4f3y_A           83 -P---------------EGTLVHLDAALRHDVK--LVIGTTG--FSEPQK-AQLRAAGEKI-ALVFSANMSVGVNVTMKL  140 (272)
T ss_dssp             -H---------------HHHHHHHHHHHHHTCE--EEECCCC--CCHHHH-HHHHHHTTTS-EEEECSCCCHHHHHHHHH
T ss_pred             -H---------------HHHHHHHHHHHHcCCC--EEEECCC--CCHHHH-HHHHHHhccC-CEEEECCCCHHHHHHHHH
Confidence             1               1234555555555533  3333322  111111 1223332210 112222 1122   2456


Q ss_pred             HHHHHHHhCCCCCCCceEEeecccC
Q 016424          195 NTFVAEVLGLDPRDVDVPVVGGHAG  219 (390)
Q Consensus       195 ~~~la~~l~v~p~~V~~~ViG~Hg~  219 (390)
                      .+..|+.|+   .+-++-|+=-|+.
T Consensus       141 ~~~aa~~l~---~~~diei~E~HH~  162 (272)
T 4f3y_A          141 LEFAAKQFA---QGYDIEIIEAHHR  162 (272)
T ss_dssp             HHHHHHHTS---SSCEEEEEEEECT
T ss_pred             HHHHHHhcC---cCCCEEEEEecCC
Confidence            677778876   4677888888886

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.03  E-value=0.074  Score=49.02  Aligned_cols=114  Identities=12%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             CCEEEEEcCC--CCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424           41 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  108 (390)
Q Consensus        41 ~~KI~VIGa~--G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-----  108 (390)
                      .++|.|+||+  |++|..++..|+..+.  +|++.|.+. ......++.....  .+..+.+ -+|   ..++++     
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            4589999998  8999999999988876  899999876 2223334432111  1222221 123   222333     


Q ss_pred             --CCcEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          109 --GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       109 --dADiVIi~ag~p~k-----~--g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                        ..|+||..+|....     +  ..+.   ...+..|+.-...+.+.+..+- ..+.||+++
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  146 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence              67999999997542     1  1232   2346677777777777665542 235677775

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.00  E-value=0.2  Score=47.13  Aligned_cols=115  Identities=12%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCC--CcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-----
Q 016424           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-----  107 (390)
Q Consensus        40 ~~~KI~VIGa~G--~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-----  107 (390)
                      +.+++.|+||+|  ++|..++..|+..+.  +|++.|.++ ......++.....  .+..+.. -+|   .++++     
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            346889999976  999999999999886  899999986 2222223322111  1122211 122   22222     


Q ss_pred             --CCCcEEEEcCCCCCC-----C--CCCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 --TGMDLVIIPAGVPRK-----P--GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 --~dADiVIi~ag~p~k-----~--g~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                        -..|++|..+|....     +  ..+..   ..+..|+.-...+.+.+..+- ..+.|++++
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence              367999999997642     1  22332   346677777777777776654 356777775

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=94.99  E-value=0.06  Score=51.41  Aligned_cols=59  Identities=22%  Similarity=0.364  Sum_probs=46.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-...+++|||+++-+|.+++.+|...+.  ++.+.+..                       |.++++.++.||+||.+.
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA--tVtv~h~~-----------------------t~~L~~~~~~ADIVI~Av  211 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGA--TVSVCHIK-----------------------TKDLSLYTRQADLIIVAA  211 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSCHHHHHTTCSEEEECS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHhhcCCEEEECC
Confidence            34668999999945589999999998875  67666531                       357889999999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus       212 g~p~  215 (285)
T 3p2o_A          212 GCVN  215 (285)
T ss_dssp             SCTT
T ss_pred             CCCC
Confidence            8663

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.99  E-value=0.067  Score=50.25  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=49.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhh-C-CCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENAL-T-GMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-~-dADiVI  114 (390)
                      .+.++|.|+|+ |++|.+++..|...+  .+|+++|++.  +...+.++...   ..+...    ++ +++ + ++|+||
T Consensus       117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G--~~v~v~~R~~~~a~~l~~~~~~~---~~~~~~----~~-~~~~~~~~DivI  185 (272)
T 1p77_A          117 RPNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAV----SM-DSIPLQTYDLVI  185 (272)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEE----EG-GGCCCSCCSEEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHcccc---CCeEEe----eH-HHhccCCCCEEE
Confidence            34579999999 999999999998887  4999999986  33444444321   133332    23 345 4 899999


Q ss_pred             EcCCCCC
Q 016424          115 IPAGVPR  121 (390)
Q Consensus       115 i~ag~p~  121 (390)
                      .+.+.+.
T Consensus       186 n~t~~~~  192 (272)
T 1p77_A          186 NATSAGL  192 (272)
T ss_dssp             ECCCC--
T ss_pred             ECCCCCC
Confidence            9987654

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=94.98  E-value=0.16  Score=48.70  Aligned_cols=113  Identities=17%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC---------c--hHHHHHHHhcccCCCeEEE-EeCCCChhh---
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---------N--TPGVTADISHMDTGAVVRG-FLGQPQLEN---  105 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~---------~--~~g~a~DL~~~~~~~~v~~-~~~t~dl~~---  105 (390)
                      .++|.|.||+|++|..++..|+..+.  +|++.|..         .  ....+.++....  ..+.. .+...+..+   
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhC--CeEEEeCCCHHHHHHHHH
Confidence            45788889999999999999999886  89998863         2  233344454321  12211 110111112   


Q ss_pred             ----hhCCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424          106 ----ALTGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       106 ----al~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t  158 (390)
                          .+...|++|..+|+.....   .+..   ..+..|..-.    +.+.+.+.+.. .+.||+++
T Consensus        85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vs  150 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTA  150 (319)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEC
Confidence                2347899999999765331   2332   2355565443    44444444443 46677665

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=94.97  E-value=0.066  Score=49.26  Aligned_cols=74  Identities=16%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhh--------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENA--------  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a--------  106 (390)
                      .+++.|.||+|++|..++..|+..+.  +|++.|.+.  ......++...  ..++..+.+. +|.   .++        
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            35788899999999999999999886  899999886  23334444332  1344443321 222   122        


Q ss_pred             hCCCcEEEEcCC
Q 016424          107 LTGMDLVIIPAG  118 (390)
Q Consensus       107 l~dADiVIi~ag  118 (390)
                      +-.-|++|..+|
T Consensus        81 ~g~id~lvnnAg   92 (260)
T 2qq5_A           81 QGRLDVLVNNAY   92 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            234699999984

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=94.95  E-value=0.026  Score=58.46  Aligned_cols=66  Identities=23%  Similarity=0.318  Sum_probs=49.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  +++.||.+.....+.++.       +..   . ++.+.+++||+|+++..
T Consensus       140 l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~---~-~l~e~~~~aDvV~l~~P  205 (529)
T 1ygy_A          140 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL---L-SLDDLLARADFISVHLP  205 (529)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE---C-CHHHHHHHCSEEEECCC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE---c-CHHHHHhcCCEEEECCC
Confidence            44679999999 9999999999988776  899999876322233221       121   1 56788999999999863

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=94.94  E-value=0.019  Score=55.18  Aligned_cols=89  Identities=20%  Similarity=0.242  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.+|+.++..+...+.  ++..||.+.. .   +    ..    .   ...++.+.++.||+|+++..
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~----~~----~---~~~~l~ell~~aDvV~l~~P  183 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G----PW----R---FTNSLEEALREARAAVCALP  183 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S----SS----C---CBSCSHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c----Cc----c---cCCCHHHHHhhCCEEEEeCc
Confidence            45679999999 9999999999987776  8999998753 0   1    10    1   12356789999999999863


Q ss_pred             CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          119 VP-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       119 ~p-~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .. .-.++            +.  ...+....|++++|+++.
T Consensus       184 ~~~~t~~~------------i~--~~~l~~mk~gailin~sr  211 (303)
T 1qp8_A          184 LNKHTRGL------------VK--YQHLALMAEDAVFVNVGR  211 (303)
T ss_dssp             CSTTTTTC------------BC--HHHHTTSCTTCEEEECSC
T ss_pred             CchHHHHH------------hC--HHHHhhCCCCCEEEECCC
Confidence            21 11111            10  123344458899999974

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.94  E-value=0.077  Score=53.48  Aligned_cols=125  Identities=16%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCC-CcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d-ADiVIi~  116 (390)
                      +++||.|||. |..|.+.|..|...+.  ++..+|.+..  ......|...  ...  ++.|. +..+-+.+ +|+||++
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l~~~G~--~V~~~D~~~~~~~~~~~~L~~~--gi~--~~~g~-~~~~~~~~~~d~vv~s   79 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLLAKLGA--IVTVNDGKPFDENPTAQSLLEE--GIK--VVCGS-HPLELLDEDFCYMIKN   79 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHHHHTTC--EEEEEESSCGGGCHHHHHHHHT--TCE--EEESC-CCGGGGGSCEEEEEEC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEeCCcccCChHHHHHHhC--CCE--EEECC-ChHHhhcCCCCEEEEC
Confidence            4569999999 9999999999998887  9999999651  1223344432  223  33343 22334566 9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC--cccHHHHHHHHHHh
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV--NSTVPIAAEVFKKA  175 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv--d~~t~i~ae~~~~~  175 (390)
                      .|+|...-+ ......++++++.++-- ..+..+ ..+|-+|=-.  .+++.+++.+++..
T Consensus        80 pgi~~~~p~-~~~a~~~gi~v~~~~e~-~~~~~~-~~~IaVTGTnGKTTTt~ml~~iL~~~  137 (451)
T 3lk7_A           80 PGIPYNNPM-VKKALEKQIPVLTEVEL-AYLVSE-SQLIGITGSNGKTTTTTMIAEVLNAG  137 (451)
T ss_dssp             TTSCTTSHH-HHHHHHTTCCEECHHHH-HHHHCC-SEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             CcCCCCChh-HHHHHHCCCcEEeHHHH-HHHhcC-CCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            998764221 11112334444433221 223333 3555565443  46667777777665

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=94.94  E-value=0.2  Score=46.57  Aligned_cols=114  Identities=14%  Similarity=0.127  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------  107 (390)
                      .+.+.|.||+|++|..++..|+..+.  ++++.+...   ......++....  .++..+.. -+|.   ++++      
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999998886  777775443   233444444322  23333322 1232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                       ...|++|..+|......   .+.   ...+..|+.-...+.+.+...- ..+.|++++
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence             37899999998753221   222   2345677766666666555442 356777775

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.94  E-value=0.16  Score=47.31  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=70.1

Q ss_pred             CCEEEEEcCC--CCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           41 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~--G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      .++|.|+||+  |++|..++..|+..+.  +|++.|.+. ......++.....  .+..+.+ -+|   ..+++      
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3578999998  8999999999998886  899999876 2223334432111  1122211 122   22223      


Q ss_pred             -CCCcEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 016424          108 -TGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (390)
Q Consensus       108 -~dADiVIi~ag~p~k-----~--g~~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~tN  159 (390)
                       ...|++|..+|....     +  ..+.   ...+..|+.-...+++.+..+-  ..+.||++|-
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence             267999999997532     1  2232   2356677777777777666553  2467777753

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.93  E-value=0.064  Score=51.59  Aligned_cols=58  Identities=19%  Similarity=0.377  Sum_probs=47.1

Q ss_pred             CCCCCEEEEEcCCC-CcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G-~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .....+++|||+ | -||.+++.+|...+-  ++.+.+..                       |.|+.+.++.||+||.+
T Consensus       162 ~l~gk~vvVIG~-s~iVG~p~A~lL~~~gA--tVtv~hs~-----------------------t~~L~~~~~~ADIVI~A  215 (301)
T 1a4i_A          162 PIAGRHAVVVGR-SKIVGAPMHDLLLWNNA--TVTTCHSK-----------------------TAHLDEEVNKGDILVVA  215 (301)
T ss_dssp             CCTTCEEEEECC-CTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEECC-CchHHHHHHHHHHhCCC--eEEEEECC-----------------------cccHHHHhccCCEEEEC
Confidence            456789999999 6 589999999988774  67777521                       45889999999999999


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      .|.|.
T Consensus       216 vg~p~  220 (301)
T 1a4i_A          216 TGQPE  220 (301)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            98874

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=94.93  E-value=0.06  Score=52.31  Aligned_cols=92  Identities=20%  Similarity=0.249  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..++|+|||. |.+|+.++..+...+.  ++..||.+.... +.++   .     +.   ..++.+.+++||+|++....
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~---~-----~~---~~~l~ell~~aDvV~l~~p~  209 (333)
T 1j4a_A          145 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK---G-----YY---VDSLDDLYKQADVISLHVPD  209 (333)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT---T-----CB---CSCHHHHHHHCSEEEECSCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh---C-----ee---cCCHHHHHhhCCEEEEcCCC
Confidence            3579999999 9999999999887776  899999876322 2221   1     11   12577889999999998632


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .  +. ++        .++.  ...+....|++++|+++-
T Consensus       210 ~--~~-t~--------~li~--~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          210 V--PA-NV--------HMIN--DESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             C--GG-GT--------TCBS--HHHHHHSCTTEEEEECSC
T ss_pred             c--HH-HH--------HHHh--HHHHhhCCCCcEEEECCC
Confidence            1  11 11        0110  122333467899999863

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=94.93  E-value=0.13  Score=47.12  Aligned_cols=113  Identities=15%  Similarity=0.097  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------CCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------TGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------~dA  110 (390)
                      .+.+.|+||+|++|..++..|+..+.  ++++.|.+. .....++.     .++..+.. -+|   ..+++      ...
T Consensus         9 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~-~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            9 DAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG-EDVVADLG-----DRARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC-HHHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch-HHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            45788999999999999999998886  899999864 22222221     22333221 122   22222      388


Q ss_pred             cEEEEcCCCCCCC-------CCCH---HHHHHHHHHHHHHHHHHHHHh-----------CCCcEEEEecCCC
Q 016424          111 DLVIIPAGVPRKP-------GMTR---DDLFNINAGIVRTLCEGIAKC-----------CPNATVNLISNPV  161 (390)
Q Consensus       111 DiVIi~ag~p~k~-------g~~r---~~l~~~N~~ii~~ia~~I~~~-----------~p~a~iiv~tNPv  161 (390)
                      |++|..+|.....       ..+.   ...+..|+.-...+.+.+..+           ...+.||+++--.
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  152 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVA  152 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchh
Confidence            9999999864210       1222   234556665444444444332           3356777776443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=94.92  E-value=0.033  Score=55.57  Aligned_cols=94  Identities=18%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|.|||. |.||+.++..+...+.  +++.||... ....+.++.       ++.   ..++++.++.||+|++..
T Consensus       189 l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~~  255 (393)
T 2nac_A          189 LEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNC  255 (393)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECS
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEec
Confidence            45679999999 9999999998887675  899999875 222222221       111   135788899999999985


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          118 GV-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       118 g~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .. |.-.++     +  |       ...+....|++++|+++-
T Consensus       256 Plt~~t~~l-----i--~-------~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          256 PLHPETEHM-----I--N-------DETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             CCCTTTTTC-----B--S-------HHHHTTSCTTEEEEECSC
T ss_pred             CCchHHHHH-----h--h-------HHHHhhCCCCCEEEECCC
Confidence            32 221121     1  0       123344468899999963

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.92  E-value=0.016  Score=56.38  Aligned_cols=100  Identities=17%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCCC-cHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC--CChhhhhCCCcEE
Q 016424           39 AAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ--PQLENALTGMDLV  113 (390)
Q Consensus        39 ~~~~KI~VIGa~G~-vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t--~dl~~al~dADiV  113 (390)
                      ....+++|||+ |. ||.+++..|...+.  ++.+.|++.  ....+..+...  ....+.+..+  .++++++++||+|
T Consensus       175 l~gk~vvVIG~-G~iVG~~~A~~L~~~gA--tVtv~nR~~~~l~~ra~~la~~--~~~~t~~~~t~~~~L~e~l~~ADIV  249 (320)
T 1edz_A          175 LYGKKCIVINR-SEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLN--KHHVEDLGEYSEDLLKKCSLDSDVV  249 (320)
T ss_dssp             TTTCEEEEECC-CTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCC--CCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCCCEEEEECC-CcchHHHHHHHHHHCCC--EEEEEeCchHHHHhHHHHHhhh--cccccccccccHhHHHHHhccCCEE
Confidence            45679999999 75 69999999988774  788888874  11111112111  0111111112  5789999999999


Q ss_pred             EEcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          114 IIPAGVPRK-PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       114 Ii~ag~p~k-~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                      |.+.|.|.- -..   ++                 ..|.+++|-++-|-|+
T Consensus       250 IsAtg~p~~vI~~---e~-----------------vk~GavVIDVgi~rD~  280 (320)
T 1edz_A          250 ITGVPSENYKFPT---EY-----------------IKEGAVCINFACTKNF  280 (320)
T ss_dssp             EECCCCTTCCBCT---TT-----------------SCTTEEEEECSSSCCB
T ss_pred             EECCCCCcceeCH---HH-----------------cCCCeEEEEcCCCccc
Confidence            999987642 110   00                 1356788888877665

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=94.91  E-value=0.035  Score=54.93  Aligned_cols=97  Identities=22%  Similarity=0.321  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -..++|+|||. |.||+.++..+...+.  ++..||.......+.+.   .    ++ .   .++.+.++.||+|++..-
T Consensus       174 l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~ell~~aDvV~l~~P  239 (365)
T 4hy3_A          174 IAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN---G----VE-P---ASLEDVLTKSDFIFVVAA  239 (365)
T ss_dssp             SSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT---T----CE-E---CCHHHHHHSCSEEEECSC
T ss_pred             cCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc---C----ee-e---CCHHHHHhcCCEEEEcCc
Confidence            34579999999 9999999998876666  89999987522222221   1    11 1   267899999999999753


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 016424          119 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  163 (390)
Q Consensus       119 ~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~  163 (390)
                      . |.-.++     +  |       .+.+....|++++|+++  .++|.
T Consensus       240 lt~~T~~l-----i--~-------~~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          240 VTSENKRF-----L--G-------AEAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             SSCC---C-----C--C-------HHHHHTSCTTCEEEECSCGGGSCH
T ss_pred             CCHHHHhh-----c--C-------HHHHhcCCCCcEEEECcCCchhCH
Confidence            2 221111     1  1       12344556899999996  44543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.90  E-value=0.041  Score=52.93  Aligned_cols=68  Identities=10%  Similarity=0.163  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi  115 (390)
                      +++||+|||+ |.+|..++..+...+-+.-+.++|.+..  ...+..+. .   +  +.   .+|+++.+.  ++|+|++
T Consensus         4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~-~---~--~~---~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA-I---P--VA---YGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT-C---C--CC---BSSHHHHHHCTTCSEEEE
T ss_pred             CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC-C---C--ce---eCCHHHHhcCCCCCEEEE
Confidence            5679999999 9999999988887654333458899862  22222221 1   1  12   257778777  8999999


Q ss_pred             cC
Q 016424          116 PA  117 (390)
Q Consensus       116 ~a  117 (390)
                      +.
T Consensus        74 ~t   75 (330)
T 3e9m_A           74 PT   75 (330)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.88  E-value=0.052  Score=53.21  Aligned_cols=77  Identities=21%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .++.+|.|+|+ |++|...+..++..+.  ++..+|.+.. ...+.++...  ...+.. ....++.+.++++|+||.+.
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~DvVI~~~  238 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELLY-SNSAEIETAVAEADLLIGAV  238 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEEE-CCHHHHHHHHHTCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCc--eeEeee-CCHHHHHHHHcCCCEEEECC
Confidence            34579999999 9999999999998886  8999999862 2222222211  111111 11235667788999999998


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      +.|.
T Consensus       239 ~~~~  242 (361)
T 1pjc_A          239 LVPG  242 (361)
T ss_dssp             CCTT
T ss_pred             CcCC
Confidence            8764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.87  E-value=0.062  Score=50.41  Aligned_cols=71  Identities=14%  Similarity=0.321  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhh--CCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al--~dADiVIi  115 (390)
                      +.++|.|+|+ |++|..++..|...+  .+|+++|++.  +...+.++...   ..+...    ++ +++  .++|+||.
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G--~~V~v~~R~~~~~~~la~~~~~~---~~~~~~----~~-~~~~~~~~DivVn  186 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAHT---GSIQAL----SM-DELEGHEFDLIIN  186 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGGG---SSEEEC----CS-GGGTTCCCSEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHhhcc---CCeeEe----cH-HHhccCCCCEEEE
Confidence            4579999999 999999999999888  4899999976  23344444321   123321    22 233  48999999


Q ss_pred             cCCCCC
Q 016424          116 PAGVPR  121 (390)
Q Consensus       116 ~ag~p~  121 (390)
                      ++|.+.
T Consensus       187 ~t~~~~  192 (271)
T 1nyt_A          187 ATSSGI  192 (271)
T ss_dssp             CCSCGG
T ss_pred             CCCCCC
Confidence            987654

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=94.87  E-value=0.059  Score=53.11  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcE-EEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~e-L~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      .-..++|+|||. |.||+.++..+...+.  + +..||.+. ....+.++       .+..   ..++.+.++.||+|++
T Consensus       161 ~l~g~tvgIIG~-G~IG~~vA~~l~~~G~--~~V~~~d~~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l  227 (364)
T 2j6i_A          161 DIEGKTIATIGA-GRIGYRVLERLVPFNP--KELLYYDYQALPKDAEEKV-------GARR---VENIEELVAQADIVTV  227 (364)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGCC--SEEEEECSSCCCHHHHHHT-------TEEE---CSSHHHHHHTCSEEEE
T ss_pred             cCCCCEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCCccchhHHHhc-------CcEe---cCCHHHHHhcCCEEEE
Confidence            345679999999 9999999998876664  5 89999875 22222221       1222   2367888999999999


Q ss_pred             cCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          116 PAGV-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       116 ~ag~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .... +.-.++     +  |       ...+....|++++|+++.
T Consensus       228 ~~P~t~~t~~l-----i--~-------~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          228 NAPLHAGTKGL-----I--N-------KELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             CCCCSTTTTTC-----B--C-------HHHHTTSCTTEEEEECSC
T ss_pred             CCCCChHHHHH-----h--C-------HHHHhhCCCCCEEEECCC
Confidence            8632 211121     0  0       122344568899999974

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.86  E-value=0.13  Score=47.66  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------CC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-------TG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-------~d  109 (390)
                      .++|.|.||+|++|..++..|+..+.  +|++.|.+....     .    ...+..+.+. +|   ..+++       ..
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-----~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   96 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPS-----A----DPDIHTVAGDISKPETADRIVREGIERFGR   96 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCC-----S----STTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhc-----c----cCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence            35788999999999999999999886  899999875110     0    0122222211 12   22222       37


Q ss_pred             CcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHH----HHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia----~~I~~~~p~a~iiv~t  158 (390)
                      .|++|..+|......   .+..   ..+..|+.-...+.    +.+.+. ..+.+++++
T Consensus        97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~is  154 (260)
T 3un1_A           97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSIT  154 (260)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEe
Confidence            999999999754221   2222   34555654444444    444443 356666664

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.84  E-value=0.075  Score=50.29  Aligned_cols=137  Identities=20%  Similarity=0.172  Sum_probs=78.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .+.+++.|+|+ |++|..++..|...+ +.+|++++++.  +...+.++..    ..+.... .+++.+  .++|+||.+
T Consensus       118 l~~k~~lvlGa-Gg~~~aia~~L~~~G-~~~v~i~~R~~~~a~~la~~~~~----~~~~~~~-~~~l~~--~~~DivIna  188 (272)
T 3pwz_A          118 LRNRRVLLLGA-GGAVRGALLPFLQAG-PSELVIANRDMAKALALRNELDH----SRLRISR-YEALEG--QSFDIVVNA  188 (272)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHCC----TTEEEEC-SGGGTT--CCCSEEEEC
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhcc----CCeeEee-HHHhcc--cCCCEEEEC
Confidence            35679999999 999999999998876 35899999976  3444455543    2344432 233322  799999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCcee-ecccccHHHH
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTMLDVVRA  194 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~Lds~R~  194 (390)
                      ......++..-.+               .....|+++++=+ .||..  |+++.+ .++.+.   .+++ |+.+| ..+.
T Consensus       189 Tp~gm~~~~~~i~---------------~~~l~~~~~V~DlvY~P~~--T~ll~~-A~~~G~---~~~~~Gl~ML-~~Qa  246 (272)
T 3pwz_A          189 TSASLTADLPPLP---------------ADVLGEAALAYELAYGKGL--TPFLRL-AREQGQ---ARLADGVGML-VEQA  246 (272)
T ss_dssp             SSGGGGTCCCCCC---------------GGGGTTCSEEEESSCSCCS--CHHHHH-HHHHSC---CEEECTHHHH-HHHH
T ss_pred             CCCCCCCCCCCCC---------------HHHhCcCCEEEEeecCCCC--CHHHHH-HHHCCC---CEEECCHHHH-HHHH
Confidence            5432211110000               0123567776543 68864  445433 244432   2233 66776 3444


Q ss_pred             HHHHHHHhCCCC
Q 016424          195 NTFVAEVLGLDP  206 (390)
Q Consensus       195 ~~~la~~l~v~p  206 (390)
                      ....--..|..|
T Consensus       247 ~~~f~lwtg~~~  258 (272)
T 3pwz_A          247 AEAFAWWRGVRP  258 (272)
T ss_dssp             HHHHHHHHSCCC
T ss_pred             HHHHHHHhCCCC
Confidence            444445556554

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=94.84  E-value=0.025  Score=58.81  Aligned_cols=124  Identities=15%  Similarity=0.129  Sum_probs=82.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHHHHHHhccc-CCCeEEEEeCCCChhhhhC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~a~DL~~~~-~~~~v~~~~~t~dl~~al~  108 (390)
                      ..||++.|| |..|..++.+|..    .++     ...++++|...  ..+. .||.+.. ...+-+.  ...+|.++++
T Consensus       320 d~riv~~GA-GaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r-~~l~~~k~~~A~~~~--~~~~L~eav~  395 (605)
T 1o0s_A          320 QEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR-KEMNPRHVQFAKDMP--ETTSILEVIR  395 (605)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC-SSCCGGGTTTCBSSC--CCCCHHHHHH
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCC-CCchHHHHHHHhhcC--CCCCHHHHHh
Confidence            469999999 9999999987765    565     47899999987  2221 1344321 1111110  1246999999


Q ss_pred             C--CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCCCcee
Q 016424          109 G--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYDPKKLL  184 (390)
Q Consensus       109 d--ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s~~p~~kvi  184 (390)
                      +  +|+.|=+.+.|   |.           +-.++.+.|.++|++.+|+-.+||..  -+++   +-..+.+  ..+.||
T Consensus       396 ~vkpdVlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~p---e~a~~~t--~G~aiv  456 (605)
T 1o0s_A          396 AARPGALIGASTVR---GA-----------FNEEVIRAMAEINERPIIFALSNPTSKAECTA---EEAYTFT--NGAALY  456 (605)
T ss_dssp             HHCCSEEEECSSCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGCSSCH---HHHHHTT--TSCCEE
T ss_pred             hcCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCH---HHHHhhc--cCCEEE
Confidence            5  99999876544   21           12478889999999999999999986  5554   2223322  125788


Q ss_pred             ecc
Q 016424          185 GVT  187 (390)
Q Consensus       185 G~t  187 (390)
                      ++.
T Consensus       457 ATG  459 (605)
T 1o0s_A          457 ASG  459 (605)
T ss_dssp             EES
T ss_pred             EEC
Confidence            774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.83  E-value=0.5  Score=43.53  Aligned_cols=115  Identities=10%  Similarity=0.050  Sum_probs=69.0

Q ss_pred             CCEEEEEcCCC--CcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hh
Q 016424           41 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------EN  105 (390)
Q Consensus        41 ~~KI~VIGa~G--~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~  105 (390)
                      .+.+.|.||+|  +||..++..|+..+.  +|++.|+++  ....+..+.... ..++..+.. -+|.          .+
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45677889866  899999999999986  899999987  333444444432 223333321 1222          12


Q ss_pred             hhCCCcEEEEcCCCCCC-----C--CCCHHHH---HHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          106 ALTGMDLVIIPAGVPRK-----P--GMTRDDL---FNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       106 al~dADiVIi~ag~p~k-----~--g~~r~~l---~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      .+-..|++|..+|....     +  ..++.++   +.-|.......++....+. ..+.||+++
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            34578999999886421     1  1233332   3445554555555555544 356777775

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=94.82  E-value=0.025  Score=58.41  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=81.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~  108 (390)
                      ..||++.|| |..|..++.+|..    .++     ...++++|...  ..+. .||.+... ..+-+.  ...+|.++++
T Consensus       282 d~riv~~GA-GaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r-~~l~~~k~~~A~~~~--~~~~L~eav~  357 (555)
T 1gq2_A          282 DHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGR-ASLTPEKEHFAHEHC--EMKNLEDIVK  357 (555)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTC-SSCCTTGGGGCBSCC--CCCCHHHHHH
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCC-CCchHHHHHHHhhcC--CCCCHHHHHh
Confidence            469999999 9999999987765    454     47899999977  2221 13433210 111110  1246999999


Q ss_pred             C--CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCCCcee
Q 016424          109 G--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYDPKKLL  184 (390)
Q Consensus       109 d--ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s~~p~~kvi  184 (390)
                      +  +|+.|=+.+.|   |-           +-.++.+.|.+++++.+|+-.+||..  -+++   |-..+.+  ..+.||
T Consensus       358 ~vkp~vlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~p---e~a~~~t--~G~aiv  418 (555)
T 1gq2_A          358 DIKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTSKAECTA---EQLYKYT--EGRGIF  418 (555)
T ss_dssp             HHCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGCSSCH---HHHHHHT--TTCCEE
T ss_pred             hcCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCccCcCH---HHHHHhc--cCCEEE
Confidence            5  99999876544   21           12478889999999999999999986  5554   2223322  125788


Q ss_pred             ecc
Q 016424          185 GVT  187 (390)
Q Consensus       185 G~t  187 (390)
                      ++.
T Consensus       419 ATG  421 (555)
T 1gq2_A          419 ASG  421 (555)
T ss_dssp             EES
T ss_pred             EeC
Confidence            874

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.81  E-value=0.079  Score=50.16  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=45.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ..+|.|+|+ |++|.+++..|...+  .+|.+++++.  +...+ ++.       ++... -    +.+.++|+||.+..
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G--~~v~V~nRt~~ka~~la-~~~-------~~~~~-~----~~l~~~DiVInaTp  181 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQG--LQVSVLNRSSRGLDFFQ-RLG-------CDCFM-E----PPKSAFDLIINATS  181 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTT--CEEEEECSSCTTHHHHH-HHT-------CEEES-S----CCSSCCSEEEECCT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH-HCC-------CeEec-H----HHhccCCEEEEccc
Confidence            569999999 999999999999887  5999999987  33344 433       22221 1    23459999998754


Q ss_pred             C
Q 016424          119 V  119 (390)
Q Consensus       119 ~  119 (390)
                      .
T Consensus       182 ~  182 (269)
T 3phh_A          182 A  182 (269)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.80  E-value=0.04  Score=51.62  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +. ||.|||+ |++|.+++..|...+ +.+|.++|++.  ..+.+|.+..   ..  .. ..++.++++++|+||.+...
T Consensus       108 ~~-~vliiGa-Gg~a~ai~~~L~~~G-~~~I~v~nR~~--~ka~~la~~~---~~--~~-~~~~~~~~~~aDiVInatp~  176 (253)
T 3u62_A          108 KE-PVVVVGA-GGAARAVIYALLQMG-VKDIWVVNRTI--ERAKALDFPV---KI--FS-LDQLDEVVKKAKSLFNTTSV  176 (253)
T ss_dssp             CS-SEEEECC-SHHHHHHHHHHHHTT-CCCEEEEESCH--HHHHTCCSSC---EE--EE-GGGHHHHHHTCSEEEECSST
T ss_pred             CC-eEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCH--HHHHHHHHHc---cc--CC-HHHHHhhhcCCCEEEECCCC
Confidence            45 9999999 999999999998877 36899999975  2233343321   11  11 24677889999999997543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.80  E-value=0.12  Score=47.84  Aligned_cols=114  Identities=14%  Similarity=0.092  Sum_probs=70.6

Q ss_pred             CCEEEEEcCC--CCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424           41 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (390)
Q Consensus        41 ~~KI~VIGa~--G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------  107 (390)
                      .++|.|+||+  |++|..++..|+..+.  +|++.|.+. ......++.....  .+..+.. -+|   ..+++      
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4589999998  8999999999999886  899999876 2223334432111  1222211 122   22222      


Q ss_pred             -CCCcEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 -TGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 -~dADiVIi~ag~p~k-----~--g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                       ...|++|..+|....     +  ..+.   ...+..|+.-...+.+.+..+- +.+.||+++
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS  144 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence             267999999997542     1  2232   2456678777777777776553 236677775

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.79  E-value=0.056  Score=53.96  Aligned_cols=102  Identities=15%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEE-----e-C-----CC-----
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGF-----L-G-----QP-----  101 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~-----~-~-----t~-----  101 (390)
                      .++.||.|||+ |.+|...+..+...+.  ++..+|++. ....+.++.. .. ..+...     . +     +.     
T Consensus       170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga--~V~v~D~~~~~~~~~~~lGa-~~-~~~~~~~~~~~~~g~~~~~~~~~~~~  244 (401)
T 1x13_A          170 VPPAKVMVIGA-GVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQSMGA-EF-LELDFKEEAGSGDGYAKVMSDAFIKA  244 (401)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCGGGHHHHHHTTC-EE-CCC--------CCHHHHHHSHHHHHH
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCC-EE-EEecccccccccccchhhccHHHHHH
Confidence            35679999999 9999999998888775  799999987 2233344321 00 000000     0 0     00     


Q ss_pred             ---ChhhhhCCCcEEEEcCCCCC--CCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          102 ---QLENALTGMDLVIIPAGVPR--KPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       102 ---dl~~al~dADiVIi~ag~p~--k~g~-~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                         ++.+.++++|+||.+++.|-  .|.. ++               ..+....|+++|+.+++|
T Consensus       245 ~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~---------------~~l~~mk~g~vIVdva~~  294 (401)
T 1x13_A          245 EMELFAAQAKEVDIIVTTALIPGKPAPKLITR---------------EMVDSMKAGSVIVDLAAQ  294 (401)
T ss_dssp             HHHHHHHHHHHCSEEEECCCCTTSCCCCCBCH---------------HHHHTSCTTCEEEETTGG
T ss_pred             HHHHHHHHhCCCCEEEECCccCCCCCCeeeCH---------------HHHhcCCCCcEEEEEcCC
Confidence               25677889999999977662  2221 11               223334588999999876

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.78  E-value=0.083  Score=50.44  Aligned_cols=59  Identities=20%  Similarity=0.385  Sum_probs=46.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-...+++|||+++-+|.+++.+|...+.  ++.+.+..                       |.++++.+++||+||.+.
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA--tVtv~hs~-----------------------t~~L~~~~~~ADIVI~Av  212 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA--TVTTCHRF-----------------------TTDLKSHTTKADILIVAV  212 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHhcccCCEEEECC
Confidence            34667999999944489999999998875  56666421                       357889999999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus       213 g~p~  216 (285)
T 3l07_A          213 GKPN  216 (285)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            8663

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.78  E-value=0.031  Score=57.12  Aligned_cols=72  Identities=21%  Similarity=0.127  Sum_probs=45.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC----hhhhhCCCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d----l~~al~dADiV  113 (390)
                      .+||.|||+ |+||+.++..|++++-  +.++++.|.+.......+..    ..++....-+ .+    +.+.+++.|+|
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~----g~~~~~~~Vdadnv~~~l~aLl~~~DvV   87 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQY----GVSFKLQQITPQNYLEVIGSTLEENDFL   87 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHH----TCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhc----CCceeEEeccchhHHHHHHHHhcCCCEE
Confidence            469999999 9999999999998763  47899999876221111111    1122222111 22    33466677999


Q ss_pred             EEcC
Q 016424          114 IIPA  117 (390)
Q Consensus       114 Ii~a  117 (390)
                      |.++
T Consensus        88 IN~s   91 (480)
T 2ph5_A           88 IDVS   91 (480)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9754

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=94.77  E-value=0.28  Score=41.40  Aligned_cols=86  Identities=9%  Similarity=0.078  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcCC---CCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~---G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      -++.+|+|||+|   |.+|..++..|...+.  +  +|+++...   ..+      ..++.+   .++.+...++|+|++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~--V~~vnp~~---~~i------~G~~~~---~s~~el~~~vDlvii   75 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGF--E--VLPVNPNY---DEI------EGLKCY---RSVRELPKDVDVIVF   75 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTC---SEE------TTEECB---SSGGGSCTTCCEEEE
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCC--E--EEEeCCCC---CeE------CCeeec---CCHHHhCCCCCEEEE
Confidence            356799999997   7889999998888887  5  45554411   001      123333   345565668999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv  156 (390)
                      +..                .+.+.++++.+.+....++++.
T Consensus        76 ~vp----------------~~~v~~v~~~~~~~g~~~i~~~  100 (138)
T 1y81_A           76 VVP----------------PKVGLQVAKEAVEAGFKKLWFQ  100 (138)
T ss_dssp             CSC----------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EeC----------------HHHHHHHHHHHHHcCCCEEEEc
Confidence            852                2345566666666667764443

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=94.76  E-value=0.091  Score=48.95  Aligned_cols=58  Identities=16%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEE-EEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~-L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      |+||+|+|+ |.+|+.++..+...+.  +|+ .+|.+...       +    ..+..   ++|+++.+ ++|+||-.
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~--eLva~~d~~~~~-------~----~gv~v---~~dl~~l~-~~DVvIDf   61 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH--EIVGVIENTPKA-------T----TPYQQ---YQHIADVK-GADVAIDF   61 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC-------------CCSCB---CSCTTTCT-TCSEEEEC
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC--EEEEEEecCccc-------c----CCCce---eCCHHHHh-CCCEEEEe
Confidence            689999999 9999999999988876  655 48987531       1    12222   34666666 99998844

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=94.76  E-value=0.041  Score=57.01  Aligned_cols=127  Identities=19%  Similarity=0.201  Sum_probs=81.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~  108 (390)
                      ..||++.|| |..|..++.+|..    .++     ...++++|...  ..+...||.+... ..+-+--..+.+|.++++
T Consensus       284 d~riv~~GA-GaAgigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav~  362 (564)
T 1pj3_A          284 EHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN  362 (564)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             HcEEEEeCC-CHHHHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHHh
Confidence            469999999 9999999987764    554     36899999977  2222113443210 011000000247999999


Q ss_pred             --CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCCCCcee
Q 016424          109 --GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYDPKKLL  184 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s~~p~~kvi  184 (390)
                        ++|+.|=+.+.|   |-           +-.++.+.|.++|++.+|+-.+||..  -+++-  ++ .+.+  +-+.||
T Consensus       363 ~vkp~vlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe--~a-~~~t--~G~aiv  423 (564)
T 1pj3_A          363 ILKPSTIIGVAGAG---RL-----------FTPDVIRAMASINERPVIFALSNPTAQAECTAE--EA-YTLT--EGRCLF  423 (564)
T ss_dssp             HHCCSEEEECCCSS---CC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHH--HH-HHHT--TTCCEE
T ss_pred             hcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCccCcCHH--HH-Hhhc--cCCEEE
Confidence              699999876544   31           12478889999999999999999986  55542  22 3321  125688


Q ss_pred             ecc
Q 016424          185 GVT  187 (390)
Q Consensus       185 G~t  187 (390)
                      ++.
T Consensus       424 ATG  426 (564)
T 1pj3_A          424 ASG  426 (564)
T ss_dssp             EES
T ss_pred             EeC
Confidence            774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-44
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	2e-40
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	3e-38
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	9e-37
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	1e-31
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	8e-31
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	8e-31
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	5e-30
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	6e-30
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	6e-30
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	7e-30
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	2e-29
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	2e-29
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	2e-29
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	6e-28
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	1e-26
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	6e-26
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	2e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	3e-25
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	4e-25
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	1e-24
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	6e-24
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	3e-23
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	5e-23
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	8e-22
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	5e-20
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	1e-19
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	2e-19
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	4e-19
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	7e-19
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	1e-18
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-18
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-18
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	3e-18
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	3e-18
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	4e-18
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	5e-18
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	9e-18
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	1e-17
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	2e-17
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	2e-17
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	4e-17
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	3e-16
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	2e-15
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	3e-15
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	4e-15
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	9e-10

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  148 bits (376), Expect = 2e-44
 Identities = 92/143 (64%), Positives = 115/143 (80%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
           ST+PI AEVFKK G Y+P K+ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  139 bits (350), Expect = 2e-40
 Identities = 79/148 (53%), Positives = 105/148 (70%)

Query: 186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 245
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P   F Q++   LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 246 RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFF 305
           RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  + G  GVVEC+FV SQ T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 306 ASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           ++ + LG++G E+   +G ++ +E  + 
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMI 148

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (335), Expect = 3e-38
 Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 1/148 (0%)

Query: 186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 245
           VT LD++R+NTFVAE+ G  P +V+VPV+GGH+GVTILPLLSQV     FT++E   LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 246 RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFF 305
           RIQN GTEVVEAKAG GSATLSM  AA +F  + +R L+G+ GVVECA+V        FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 306 ASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           +  + LG+ G EE   +G L+ +E    
Sbjct: 120 SQPLLLGKNGVEERKSIGTLSAFEQNAL 147

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (323), Expect = 9e-37
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 3/145 (2%)

Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 62  -DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           VN+TV IAAEV KKAG YD  KL G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  115 bits (290), Expect = 1e-31
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGA---VV 94
            +A+ GAAG I   L   +    +        L L     +      ++     +   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 95  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 153
           R              +D  ++    PR PGM R  L +IN  I     + +      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 154 VNLISNPVNSTVPIAAE 170
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  113 bits (283), Expect = 8e-31
 Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHL--YDVVNTPGVTAD------ISHMDTGAVV 94
           +VA+ GAAG IG  L   +    ++         ++  P                   ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 95  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 153
            G       + A    D  ++    PRK GM R DL  +N  I       +A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKK 182
           V ++ NP N+   IA   +K A   +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  112 bits (282), Expect = 8e-31
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+  +GA G +G   A    +N  V  + L D+      G   D++H   G      +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
               + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGV 186
           ++    I      K       ++ G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  110 bits (277), Expect = 5e-30
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVAI+GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
               +     +K       K++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  110 bits (276), Expect = 6e-30
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL 98
           KV+++GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 99  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
            +        G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +      S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 159 NPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           NPV+    +      +AG    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  110 bits (276), Expect = 6e-30
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
              E      D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NP
Sbjct: 62  DDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    IA  V +K       ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  110 bits (275), Expect = 7e-30
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           K+ I+G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
               L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
               +    F K    DP+K+ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  109 bits (273), Expect = 2e-29
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                     D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGV 186
           ++    +A            ++++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  109 bits (273), Expect = 2e-29
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 43  KVAILGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV--- 94
           +V + GAAG I   L        +       +L L D+    GV   +        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 95  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K    +  
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 155 NL-ISNPVNSTVPIAAEVFKK 174
            + + NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  108 bits (272), Expect = 2e-29
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQP 101
           K++I+GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161
                    D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 162 NSTVPIAAEVFKKAGTYDPKKLLG 185
           ++   +AAEV      +  ++++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  105 bits (262), Expect = 6e-28
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 39  AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 97
           A   K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 152
           +      + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186
            + +++NPV+  V +      +       K++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  102 bits (254), Expect = 1e-26
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----FTQEETEYL 243
           +LD  R  +F+A  LG+  +D++  V+GGH    +  +                E  + L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 244 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP 303
             R +NGG E+VE     GSA  + A + V+  ++     R                +  
Sbjct: 63  VERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESI-VLDRKRVLPCAVGLEGQYGIDKT 120

Query: 304 FFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           F    V+LGR G E+I+++  L++ +  L 
Sbjct: 121 FVGVPVKLGRNGVEQIYEI-NLDQADLDLL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 99.7 bits (248), Expect = 6e-26
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
               I      K   +  ++++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 98.6 bits (245), Expect = 2e-25
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQP 101
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +   
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 102 -QLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP   + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 97.8 bits (243), Expect = 3e-25
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 41  GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFL 98
           G +V ++GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 99  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
                +      DLV+I AG  +KPG TR DL + N  I R++ E +          + +
Sbjct: 65  WHGDYD-DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 159 NPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           NPV+    I      K      ++++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 97.9 bits (243), Expect = 4e-25
 Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY----L 243
           +LD  R  TF+A   G+  +DV   ++GGH    +             ++         +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 244 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP 303
             R + GG E+V      GSA  + A A  +  +A L+  +    V         + ++ 
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIY 121

Query: 304 FFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           F    V LG  G E+I +L PLNE E  L 
Sbjct: 122 FG-VPVILGAGGVEKILEL-PLNEEEMALL 149

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.6 bits (240), Expect = 1e-24
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L D       G   D+ H     +    +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL-FLSTPKIVF 78

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
            +  N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + +++NP
Sbjct: 79  GKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    +      K   +   +++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 6e-24
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ +    L   L L DV+     G   D+ H          +  
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                      +V++ AGV ++ G +R +L   N  + + +   I K  P+  + ++SNP
Sbjct: 81  KDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    +      K       +++G
Sbjct: 140 VDILTYVT----WKLSGLPKHRVIG 160

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 92.1 bits (228), Expect = 3e-23
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD----VVNTPGVTADISHMDTGAVV--RG 96
           KV I+GA+G +G   A+L+   P +  L L      +    G+  DI     G       
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
           ++   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK-IFV 120

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 91.7 bits (227), Expect = 5e-23
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           K+ I+G  G +G  +A  +    +       D          I   D  A +        
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 103 LEN-ALTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
            +  AL   D+VI   G  +     P   R       + +V+++   + +   +  + +I
Sbjct: 62  NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           SNPV+    +   +F+    +   K++G
Sbjct: 122 SNPVD----VITALFQHVTGFPAHKVIG 145

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 89.4 bits (221), Expect = 8e-22
 Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 13/159 (8%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
           T LD  RA   +A  LG+   DV   ++ G+   T  P ++  K      +         
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 247 IQNGGTEVVEAKAGAG---------SATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 297
                 E +      G         S+ +S A A          G      V        
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120

Query: 298 Q---VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
               V +   ++  V +  +  + +  L P+N++     
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKM 158

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 84.0 bits (207), Expect = 5e-20
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 32/167 (19%)

Query: 43  KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 97
           ++A++G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA----------- 146
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISD-TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 147 --------KCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
                   +   NAT+   +NP         E  +     + +K +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 83.4 bits (205), Expect = 1e-19
 Identities = 20/152 (13%), Positives = 40/152 (26%), Gaps = 6/152 (3%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ-----EETE 241
             LD  R    + E LG+        V+G H                         ++ +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 242 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTE 301
                 ++      E     G  + ++  +    A+  ++ L     V         + +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKD 122

Query: 302 LPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
             F +    L   G   I ++  L   E    
Sbjct: 123 NVFLSLPCVLNDHGISNIVKM-KLKPNEEQQL 153

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.0 bits (204), Expect = 2e-19
 Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 9/155 (5%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------E 238
             LD  R    + E LG++P      V+G H   ++           +           +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 239 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 298
             ++  N  +       E     G  + ++  +    A + L+ L+    V         
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 299 VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           + E  F +    LG  G  +  ++  +   E GL 
Sbjct: 123 IKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLL 156

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 4e-19
 Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 17/159 (10%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 237
             LD  R    +AE LG+ P      ++G H G + + + S V       Q         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 238 ---EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF 294
              E  + +   +     EV++ K     A   +  +     ++ L+ L     V     
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWA---IGLSVADLIESMLKNLSRIHPVSTMVK 118

Query: 295 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
               +    F +    L  +G   +     L + E    
Sbjct: 119 GMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQL 156

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 81.0 bits (199), Expect = 7e-19
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 17/159 (10%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------ 234
           T LD  R    +A+  G++ ++V   + G H    +    S                   
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 235 FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF 294
              ++ E +   ++N   +++  K     A   +  + V   +A L        V     
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYA---IGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 295 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
               ++++        L RQG        P+++ E    
Sbjct: 118 DFHGISDICMS-VPTLLNRQGVNNTINT-PVSDKELAAL 154

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 80.7 bits (198), Expect = 1e-18
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 6/151 (3%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
           T LD +R    +A+  G+   +V   ++G H G +++PLLS         Q+   +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 247 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ----VTEL 302
           I     +V               +         +R +  +   +                
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 303 PFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
                 V++GR G EE+  +  L++ E   F
Sbjct: 122 VCIGVPVKIGRDGIEEVVSI-ELDKDEIIAF 151

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 80.3 bits (197), Expect = 1e-18
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
             LD  R    ++E      ++V+  ++G H G   +P+ S+V    +  +   +     
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 247 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 306
           + +     ++     G+     A       +A L                    +   F 
Sbjct: 62  LGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-TAFG 120

Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLF 333
             V LG  G EEI +   L++YE  L 
Sbjct: 121 VPVSLGSNGVEEIVEW-DLDDYEQDLM 146

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 80.6 bits (198), Expect = 1e-18
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILP----------LLSQVKPPCSFT 236
           T LD  R    +AE++ +D R V   ++G H                 +   VK      
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 237 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 296
           +++   +   +++   E+++ K   G+    +A A  + + A L        +    ++ 
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKAILNDENAV--LPLSVYMD 115

Query: 297 SQVTEL-PFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
            Q      +  +   + R G + I ++ PL ++E    
Sbjct: 116 GQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM 152

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 79.5 bits (195), Expect = 3e-18
 Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 15/157 (9%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----------CSFT 236
           T+LD  R  T +A+  G  PR V V V+G H    +      +                 
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 237 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 296
            +  E    + +    E++E K     A        V+      + +   +  +E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 297 SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
             +      +  V LG+ G E I +L  LNE E   F
Sbjct: 122 KDL----CISVPVTLGKHGVERILEL-NLNEEELEAF 153

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 79.5 bits (195), Expect = 3e-18
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 14/155 (9%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL---------LSQVKPPCSFTQE 238
           +LD  R   ++++ L + PRDV+  +VG H    +L           L +       +  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 239 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 298
           E E + +R  N   E+V   A    A  +      +     L+ +   + ++E  +  S 
Sbjct: 62  ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSD 121

Query: 299 VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           +    F  + V LG  G E++ +L  LN  E   F
Sbjct: 122 I----FGGTPVVLGANGVEQVIEL-QLNSEEKAKF 151

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 79.1 bits (194), Expect = 4e-18
 Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 8/153 (5%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYL 243
           T LD  R    + +   +DPR VD  ++G H G +     S       P     +E    
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 244 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT--- 300
            + +      V        +   +  Y          + +  D   V             
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL 119

Query: 301 ELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
              +  +   +G  G ++I +  PL+  E    
Sbjct: 120 NDIYIGTPAIIGGTGLKQIIES-PLSADELKKM 151

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 78.7 bits (193), Expect = 5e-18
 Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 3/147 (2%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
           T+LD  R    V E   LDPR V    +G H G +     S V+          +     
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 247 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 306
           +     E  +      +     +Y     A    + +  DA                + +
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-MYLS 119

Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLF 333
               +GR G      L  L   E    
Sbjct: 120 YPAIIGRDGVLAETTL-DLTTDEQEKL 145

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 78.0 bits (191), Expect = 9e-18
 Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 16/158 (10%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 237
           T+LD +R    ++E LG+D ++V   ++G H    +           +  +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 238 --EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV 295
             E+ + +   ++  G  +++ K              V+        +R    V+   + 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 296 ASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
                     +    +  +G +E+ Q   L   E    
Sbjct: 121 IED----VAISLPSIVNSEGVQEVLQF-NLTPEEEEAL 153

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 36/172 (20%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTGAV 93
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI-------- 145
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 146 ------------AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
                        + CP+A +   +NP      +  E   +      +K++G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 30/162 (18%)

Query: 42  FKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTGAV 93
           F + I G  G    P   L +L  +    +  L LYD      +      D+   +    
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPD 62

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA------- 146
           +         E A T +D V+    V +      D+   +  G+V     G         
Sbjct: 63  IEFA-ATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 147 -------------KCCPNATVNLISNPVNSTVPIAAEVFKKA 175
                        K  P+A +   SNP          +   +
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 12/157 (7%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET------ 240
           T LD  RA   +A   G+    V    + G+   T +P     K      +E        
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 241 -EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ- 298
            E  T  +Q  G  +++      S+  S A +      + +             +     
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 299 --VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
             + E   F+   R    G  E+      +++     
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERI 155

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 76.4 bits (187), Expect = 4e-17
 Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 15/157 (9%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 237
           T+LD  R    + E   + P++V   ++G H    +              +         
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 238 -EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 296
            ++ E +   +++   +++E K               +        +   +  ++  +  
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 297 SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
             V    +      + R G  E+ ++  LN+ E   F
Sbjct: 121 RDV----YIGVPAVINRNGIREVIEI-ELNDDEKNRF 152

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 74.0 bits (181), Expect = 3e-16
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 7/153 (4%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK----PPCSFTQEETEY 242
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P       E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 243 LTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ--VT 300
                          +A   S+  S A AA++       G      V        +  + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 301 ELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           E   ++  V   + GA  + +   +NE+     
Sbjct: 122 EGIVYSFPV-TAKDGAYRVVEGLEINEFARKRM 153

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 71.8 bits (175), Expect = 2e-15
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFT---------QE 238
           MLD  R   +VA+ L + PRDV   V+G H    +  +                    ++
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 239 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 298
           + E +    +  G E+V    G GSA  + A +AV  A + L   +              
Sbjct: 63  QLEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYG 121

Query: 299 VTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
           + +  F      +G  G E + +L  LNE E   F
Sbjct: 122 LKD-MFIGLPAVIGGAGIERVIEL-ELNEEEKKQF 154

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 71.0 bits (173), Expect = 3e-15
 Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 7/151 (4%)

Query: 189 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYL 243
           LD  RA + +A   G     ++   V G+   T+       +   +        +     
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 244 TNRIQNGGTEVVEAKAGAGSATLSM-AYAAVKFADACLRGLRGDAGVVECAFVASQVTEL 302
           T     G        A   S+  S    A     D  L        +   +  +  + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 303 PFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333
             F   V       + +  L  ++ +     
Sbjct: 123 VIFGFPVTTENGEYKIVQGL-SIDAFSQERI 152

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 70.6 bits (172), Expect = 4e-15
 Identities = 25/166 (15%), Positives = 41/166 (24%), Gaps = 34/166 (20%)

Query: 41  GFKVAILGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTGAV 93
             K+ I+GA G     L +   L K   L  S + L D+       +        +    
Sbjct: 2   SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 60

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI-------------------- 133
              F     L++ +   D VI  A V     + +                          
Sbjct: 61  DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 120

Query: 134 ------NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK 173
                        +   I K  P A     +NP+     +      
Sbjct: 121 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.6 bits (131), Expect = 9e-10
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 12/147 (8%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
             LD  R    +      + R     ++G H G ++    S          E  E   N 
Sbjct: 2   NQLDSQRLKERLYNAGARNIRRA--WIIGEH-GDSMFVAKSLADFDGEVDWEAVE---ND 55

Query: 247 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 306
           ++    EV++     G+     A A  +   A +                  +  +    
Sbjct: 56  VRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV-AVG 111

Query: 307 SKVRLGRQGAEEIFQLGPLNEYESGLF 333
              +LG+ GA E+  +  L++ E    
Sbjct: 112 VPAKLGKNGA-EVADI-KLSDEEIEKL 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.96
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.96
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.96
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.96
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.96
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.96
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.96
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.95
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.95
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.95
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.95
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.95
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.95
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.95
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.95
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.94
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.94
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.93
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.93
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.93
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.92
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.91
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.58
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.7
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.67
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.57
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.4
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.33
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.24
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.23
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.1
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.02
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.87
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.81
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.76
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.65
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.61
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.52
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.49
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.41
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	97.3
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.28
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.23
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	97.23
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	97.22
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.14
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	97.13
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	97.11
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.06
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.04
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.01
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.99
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.92
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	96.91
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.91
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.84
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.82
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.78
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.78
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.74
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.72
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.65
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.63
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.61
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	96.58
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.55
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.55
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	96.53
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.53
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.51
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.48
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.45
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.44
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.43
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	96.4
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	96.37
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.36
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.36
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.34
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.32
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.31
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.26
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.22
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.13
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.12
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.11
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.09
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.08
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.08
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.02
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.0
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.96
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.95
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.93
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.9
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.84
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.83
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.82
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.79
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.76
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.72
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.72
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.69
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.69
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.67
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.67
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.64
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.61
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.6
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.55
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.54
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.52
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.51
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.48
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.46
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.45
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.39
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.37
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.36
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.35
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.32
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	95.32
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.32
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.29
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.29
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.28
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.26
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.25
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.24
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.23
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.21
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.2
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.15
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.1
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.08
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.07
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.06
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.06
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.03
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.0
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.97
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.96
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.93
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.9
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.9
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.89
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.85
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.85
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.75
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.72
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.62
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.59
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.57
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.57
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.55
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.4
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.29
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.29
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.28
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.22
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	94.18
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.18
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.16
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.12
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.06
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.89
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.87
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.86
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.78
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.76
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.74
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	93.72
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.66
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.63
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	93.62
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.56
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.53
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.49
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.36
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.28
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.26
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.23
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	93.18
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.95
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.9
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.84
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.56
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	92.44
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.39
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	92.37
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.35
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	92.3
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.21
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.21
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.18
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	92.13
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.09
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.06
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.92
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	91.91
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	91.89
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.85
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	91.83
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.58
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	91.56
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.55
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	91.52
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.26
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	91.25
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	91.23
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	91.19
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.17
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	91.13
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.1
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.96
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	90.9
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	90.49
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.34
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.31
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.25
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	90.24
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	89.99
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.89
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	89.84
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	89.76
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.59
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.58
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	89.52
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.5
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.39
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	89.22
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.13
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.02
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.97
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	88.84
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	88.5
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.46
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.43
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	88.22
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.16
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.07
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.04
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	87.94
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.73
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	87.22
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	87.02
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	86.95
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	86.79
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.41
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	85.94
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.93
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.65
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	85.45
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	85.26
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.75
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.73
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.72
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.71
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	84.6
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	84.45
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.84
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.75
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	83.07
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	82.83
d1j8yf2	211	GTPase domain of the signal sequence recognition p	82.66
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	82.09
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	81.67
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	81.56
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	81.23
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	81.18
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	81.17
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.93

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8e-36  Score=259.30  Aligned_cols=143  Identities=64%  Similarity=1.084  Sum_probs=135.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  122 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k  122 (390)
                      ||+||||+|.||++++++|+++++++||+|+|+++.+++++|++|.......+.+..+++.+++++|||+||+++|.||+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            99999977999999999999999999999999998999999999988666666655566778999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       123 ~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      |||+|.+++..|+++++++++.|.++||+++++++|||+|++++++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-35  Score=256.71  Aligned_cols=143  Identities=59%  Similarity=0.968  Sum_probs=133.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |||+||||+|+||++++++|+.+ ++++||+|+|+++ +.|+++||+|+.+......+.+++++ ++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            79999997799999999988754 7899999999988 78999999999877777777666665 789999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      ||+|||+|.|++..|++++++++++|.++||+++++++|||+|++++++++++++.++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=1.1e-34  Score=251.89  Aligned_cols=139  Identities=26%  Similarity=0.390  Sum_probs=124.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |.||+|||| |+||+++++.++++++++||+|+|+++  ++|+++||+|... ....+... ++++ ++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~-~~~~-~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG-SDDP-EICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE-ESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeec-CCCH-HHhhCCcEEEEec
Confidence            469999999 999999999999999999999999998  7899999999753 22223322 3564 7899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      |.||+|||+|+|++..|+++++++++.|.++||+++++++|||+|++|+++    ++.++||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~----~~~sg~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH----HHHHCCChhhccCC
Confidence            999999999999999999999999999999999999999999999998765    78899999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.8e-34  Score=248.93  Aligned_cols=138  Identities=27%  Similarity=0.474  Sum_probs=124.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||| |+||+++++.++++++++||+|+|+++  ++|+++||+|+..  ....+... ++|+ ++++|||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~-~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-ESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc-CCCH-HHhccccEEEEec
Confidence            79999998 999999999999999999999999998  7899999999742  22223322 4575 7899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      |.||+||++|.+++.+|+++++++++.|.++||+|+++++|||+|++|+++    ++.++||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH----HHHHCCChhcEecC
Confidence            999999999999999999999999999999999999999999999999765    78899999999996

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.3e-34  Score=246.07  Aligned_cols=137  Identities=29%  Similarity=0.497  Sum_probs=124.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |||+|||| |+||+++++.++++++++||+|+|+++  ++|+++|+.|... ....+..+  +| +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccC--Cc-HHHhcCCCEEEEecc
Confidence            79999999 999999999999999999999999998  7899999999652 34445443  35 578999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      .||++|++|.|++.+|+++++++++.|.++||+||++++|||+|++|+++    ++.++||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~----~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999998765    77889999999995

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9.8e-34  Score=245.41  Aligned_cols=137  Identities=28%  Similarity=0.368  Sum_probs=122.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhccc-CCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~-~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .||+||||+|+||+++++.++++++++||+|+|++.    ++|+++||+|.. .....++.+  .+ +++++|||+||++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~--~~-~~~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEee--CC-HHHhhhcCEEEEe
Confidence            399999966999999999999999999999999864    578999999953 233444443  35 4789999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      +|.||+|||+|++++..|+++++++++.|.++||+++++++|||+|++|+++    ++.++||++||||
T Consensus        78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~----~k~sg~~~~rViG  142 (142)
T d1o6za1          78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL----YEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH----HHHSSSCGGGEEE
T ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999998754    8899999999998

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=4e-34  Score=249.57  Aligned_cols=140  Identities=24%  Similarity=0.329  Sum_probs=126.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      ....||+|||| |+||+++++.|+++++++||+|||+++  ++|+++||+|+..  ...++..+  +| +++++|||+||
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~d-~~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEE
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEE--CC-HHHhccceeEE
Confidence            34569999999 999999999999999999999999998  7899999999753  23455543  45 48899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      +++|.|++||++|+|++.+|+++++++++.|.++||+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~----~k~sg~p~~rViG~  147 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGS  147 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEEC
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH----HHHHCcChhheecC
Confidence            999999999999999999999999999999999999999999999999998765    77889999999997

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=1.4e-33  Score=244.29  Aligned_cols=138  Identities=31%  Similarity=0.478  Sum_probs=123.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||| |+||+++++.|+.+++++||+|||+++  +.+.++|+.|...  ....+... ++| +++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~-~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe-cCC-HHHhcCCeEEEEEE
Confidence            79999998 999999999999999999999999998  6889999998752  23333332 345 58899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      |.|++||++|.+++.+|+++++++++.|.++||+||++++|||+|++|+++    ++.++||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~----~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH----HHHhCCChHhEeeC
Confidence            999999999999999999999999999999999999999999999998765    77789999999996

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=1.9e-33  Score=243.69  Aligned_cols=137  Identities=29%  Similarity=0.388  Sum_probs=117.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .||+|||| |+||+++++.++++++++||+|||+++  ++|+++||+|... ....+.++  .+ +++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee--Cc-HHHhCCCceEEEecc
Confidence            49999999 999999999999999999999999998  6899999999753 34555543  35 578999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      .|+++|++|++++.+|++++++++++|.++||+|+++++|||+|++|+++    ++.++||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~----~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH----HHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999998754    78889999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=247.60  Aligned_cols=140  Identities=21%  Similarity=0.336  Sum_probs=125.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      ..+..||+|||+ |+||+++++.|+++++++||+|||+++  ++|+++||+|...  +......  ..| +++++|||+|
T Consensus        17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~--~~d-~~~~~~adiV   92 (160)
T d1i0za1          17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVA--DKD-YSVTANSKIV   92 (160)
T ss_dssp             CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEE--CSS-GGGGTTCSEE
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEe--ccc-hhhcccccEE
Confidence            455679999999 999999999999999999999999997  7899999999753  2233322  456 4789999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      |+++|.||+||++|++++.+|+++++++++.|.+++|+++++++|||+|++|+++    ++.++||++||||
T Consensus        93 VitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~----~k~sglp~~rViG  160 (160)
T d1i0za1          93 VVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGLPKHRVIG  160 (160)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             EEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999865    7788999999998

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.9e-33  Score=241.84  Aligned_cols=137  Identities=31%  Similarity=0.466  Sum_probs=121.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhccc--CCC--eEEEEeCCCChhhhhCCCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMD--TGA--VVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~--~~~--~v~~~~~t~dl~~al~dADiV  113 (390)
                      |||+||||+|+||++++++|+++++++||+|+|+++    ++|+++||.|+.  ...  +++... ++| +++++|||+|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~-~~d-~~~l~~aDvV   78 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES-DEN-LRIIDESDVV   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE-TTC-GGGGTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCC-cch-HHHhccceEE
Confidence            799999977999999999999999999999999986    468899999964  223  444332 445 5899999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      |+|+|.||+|||+|.|++.+|+++++++++.|.++||++++ ++|||+|++++++    ++.++||++||||
T Consensus        79 VitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~----~k~sg~p~~rViG  145 (145)
T d1hyea1          79 IITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA----LVDSKFERNQVFG  145 (145)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH----HHHHCCCTTSEEE
T ss_pred             EEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999864 6899999998765    7888999999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=9.7e-34  Score=246.60  Aligned_cols=137  Identities=18%  Similarity=0.252  Sum_probs=117.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||+|||| |+||+++++.|+++++++||+|||+++  ++|+++||+|...  ....+..+  +| +++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~--~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--ND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SC-GGGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceec--cC-HHHhccccEEEEec
Confidence            59999998 999999999999999999999999998  6899999999752  23445443  45 47899999999999


Q ss_pred             CCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          118 GVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       118 g~p~----k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      |.||    +||++|.+++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH----HHHhCCCccceeCc
Confidence            9988    78999999999999999999999999999999999999999998765    78889999999995

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=2.9e-33  Score=243.59  Aligned_cols=140  Identities=25%  Similarity=0.392  Sum_probs=116.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      .+.+||+|||+ |+||+++++.|+++++++||+|||+++  ++|+++||+|... ......++  +|+ ++++|||+||+
T Consensus         3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~--~d~-~~~~~adivvi   78 (146)
T d1ez4a1           3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GEY-SDCKDADLVVI   78 (146)
T ss_dssp             TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CCG-GGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEee--ccH-HHhccccEEEE
Confidence            45689999998 999999999999999999999999998  7899999999753 23334443  465 77999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      ++|.|++||++|++++.+|+++++++++.|.++||+++++++|||+|++++++    ++.++||++||||+
T Consensus        79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~----~k~sg~p~~rViG~  145 (146)
T d1ez4a1          79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGS  145 (146)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH----HHHHCcCccceecC
Confidence            99999999999999999999999999999999999999999999999998765    78889999999997

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.6e-33  Score=243.68  Aligned_cols=139  Identities=24%  Similarity=0.379  Sum_probs=124.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      .+..||+|||| |+||+++++.|+.+++++||+|||+++  ++|+++||+|+...  ......  ++| +++++|||+||
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~--~~d-~~~~~~adivv   92 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF--GKD-YNVSANSKLVI   92 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEE--ESS-GGGGTTEEEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEe--ccc-hhhhccccEEE
Confidence            34469999998 999999999999999999999999997  78999999997632  222222  346 47899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      +++|.||+|||+|++++..|+++++++++.|.+++|+++++++|||+|++|+++    ++.+|||++||||
T Consensus        93 itag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~----~k~sg~p~~rV~G  159 (159)
T d2ldxa1          93 ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV----WKISGFPVGRVIG  159 (159)
T ss_dssp             ECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH----HHHHCSCTTTEEE
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999999865    7888999999998

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=4.9e-32  Score=240.54  Aligned_cols=169  Identities=50%  Similarity=0.787  Sum_probs=148.2

Q ss_pred             cccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       186 ~t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      +|+||++||+++||++||++|++|+++|+||||+.+++|+||++.++..+..++++++.+++++++.+|++.|.+.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            47899999999999999999999999999999887899999999888888999999999999999999999997778888


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG  345 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~  345 (390)
                      +++++++++++.+++.+.++...+.++++......+++|||+||+||++|+++++++++|+++|+++|+.++    +.|+
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~----~~lk  156 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAI----PELK  156 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHH----HHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHH----HHHH
Confidence            999999999999999877655556555543322346899999999999999999997689999999999999    5666


Q ss_pred             hhhhhcccchhcchHhHHHh
Q 016424          346 ESEERVSWKHSKGHLLQQEM  365 (390)
Q Consensus       346 ~~~~~v~~~~~~~~~~~~~~  365 (390)
                      +.       |++|++|.+++
T Consensus       157 ~~-------I~~g~~fi~~~  169 (169)
T d1mlda2         157 AS-------IKKGEEFVKNM  169 (169)
T ss_dssp             HH-------HHHHHHHHTTC
T ss_pred             HH-------HHHHHHHHhcC
Confidence            66       78999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=5.3e-32  Score=237.55  Aligned_cols=141  Identities=34%  Similarity=0.568  Sum_probs=125.8

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCC
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dA  110 (390)
                      ..+|.+||+|||| |+||+++++.++++++ .||+|+|+++  ++|+++||.|..    ....+..   +++++++++||
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~a   77 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGA   77 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTC
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEec---cCchhhhhcCC
Confidence            3577899999999 9999999999998885 5899999998  789999999964    2233333   45778999999


Q ss_pred             cEEEEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          111 DLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       111 DiVIi~ag~p~k~g~-----~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      |+||+++|.||+||+     +|++++.+|+++++++++.|.++||+|+++++|||+|++|+++    ++.++||++||||
T Consensus        78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~----~~~sg~p~~rViG  153 (154)
T d1pzga1          78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICG  153 (154)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHhCcChhcEec
Confidence            999999999999995     9999999999999999999999999999999999999999865    7788999999999


Q ss_pred             c
Q 016424          186 V  186 (390)
Q Consensus       186 ~  186 (390)
                      +
T Consensus       154 ~  154 (154)
T d1pzga1         154 M  154 (154)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=2.2e-32  Score=239.00  Aligned_cols=138  Identities=30%  Similarity=0.507  Sum_probs=121.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ..||+|||+ |+||++++++++++++ +||+|||+++  ++|+++||+|...  ..+.+... +++ +++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~-~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNT-YDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECC-GGGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-ccc-ccccCCCcEEEEe
Confidence            469999998 9999999999998885 7999999988  7999999999752  23333332 234 5889999999999


Q ss_pred             CCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          117 AGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       117 ag~p~k~g~~-----r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      +|.|++||++     |++++..|+++++++++.|.++||+|+++++|||+|++|+++    ++.++||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH----HHHHCCCchheecc
Confidence            9999999976     999999999999999999999999999999999999998765    78899999999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=2.2e-31  Score=230.54  Aligned_cols=134  Identities=28%  Similarity=0.539  Sum_probs=111.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +||+|||+ |+||++++++|+++++ .||+|+|+++  +.+.++|++|...    ...++.   ++|+ ++++|||+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l-~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d~-~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCc-ceEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCcH-HHhcCCCEEEE
Confidence            59999998 9999999999999886 4799999988  6899999999752    234443   3565 67999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      ++|.|++||++|.+++..|+++++++++.|.++||+|+++++|||+|++|+++    ++.++||++||||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~----~~~sglp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999876    7788999999998

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1e-30  Score=231.27  Aligned_cols=166  Identities=51%  Similarity=0.758  Sum_probs=145.3

Q ss_pred             cccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       186 ~t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      +|+||++||+++||+++|++|++|+++|+||||+.+++|++|++.. ..+++.+++++.+++++++.++++.+.|+|++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            4789999999999999999999999999999999778887776654 457888999999999999999999988889999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG  345 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~  345 (390)
                      +|+|.++++++.+|+.+.++...+..+++.....++++|||+||++|++|+++++++++|+++|+++|+.++    +.|+
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~----~~lk  155 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGML----DTLK  155 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHH----HHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHH----HHHH
Confidence            999999999999999988776656555555555567899999999999999999997679999999999999    5666


Q ss_pred             hhhhhcccchhcchHhHH
Q 016424          346 ESEERVSWKHSKGHLLQQ  363 (390)
Q Consensus       346 ~~~~~v~~~~~~~~~~~~  363 (390)
                      ++       |++|++|++
T Consensus       156 ~~-------I~~~~~fi~  166 (167)
T d2cmda2         156 KD-------IALGQEFVN  166 (167)
T ss_dssp             HH-------HHHHHHHHH
T ss_pred             HH-------HHHHHHHhc
Confidence            66       788888875

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=7e-30  Score=228.40  Aligned_cols=145  Identities=22%  Similarity=0.295  Sum_probs=125.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----cEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~-----~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~  108 (390)
                      .+++.||+|+||+|+||+++++.|++++++     .+|+|+|+++    ++|+++|+.|+.... ++....+++.+++++
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~~~~   99 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYEVFE   99 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTT
T ss_pred             cCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccccccchhhcc
Confidence            567789999999899999999999987653     3899999987    578999999987533 332222457789999


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~  186 (390)
                      |||+||+++|.||+|||+|.|++.+|++++++++++|.+||| +++|+++|||+|++|+++   .+.++++|++||+|+
T Consensus       100 ~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         100 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             CCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            999999999999999999999999999999999999999996 899999999999999875   244799999999986

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.96  E-value=3.3e-30  Score=227.84  Aligned_cols=153  Identities=29%  Similarity=0.427  Sum_probs=137.3

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----CCCHHHHHHHHHhhccchhhhHhhhccCC
Q 016424          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (390)
Q Consensus       188 ~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----~~~~~~~~~l~~~v~~~~~eIi~~k~gkg  262 (390)
                      +||++||+++||++||++|++|+++||||||+ +++|+||++.+++     .+++..++++.++++++|++|++.+ ++|
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999999 9999999998864     2466778999999999999999876 679


Q ss_pred             chhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHH
Q 016424          263 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCF  340 (390)
Q Consensus       263 ~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i  340 (390)
                      ++.|++|.++++++++|+++.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +||++|+++|++++..|
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  156 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAV  156 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999765   367665 789999 56899999999999999999996 99999999999999766


Q ss_pred             HHHHHh
Q 016424          341 QDWLGE  346 (390)
Q Consensus       341 ~~~l~~  346 (390)
                      +..++.
T Consensus       157 k~~i~~  162 (164)
T d1uxja2         157 RATLDT  162 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666644

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=6.2e-30  Score=224.02  Aligned_cols=143  Identities=26%  Similarity=0.460  Sum_probs=121.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcE-----EEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG  109 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~e-----L~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d  109 (390)
                      ++++||+||||+|+||+++++.|++++++++     +.|+|.+.    ..+.++|+.|+.. +.++.+..+++.+++++|
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhccc
Confidence            5789999999889999999999999987654     56677665    4678888888764 333333334556799999


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      ||+||+++|.||+|||+|++++.+|+++++++++.|.++|| +++++++|||+|++|+++   ++++++||++|||.
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            99999999999999999999999999999999999999995 899999999999999875   35579999999984

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=9.1e-30  Score=222.42  Aligned_cols=145  Identities=18%  Similarity=0.236  Sum_probs=126.3

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~  265 (390)
                      |.|||+|||++|++.+.   .++ +++|+||||+ +++|+||.+++.+..   +++++.+++++++++|++.|   |+|+
T Consensus         2 t~LDsaR~r~~l~~~~~---~~v~~a~ViGeHGd-s~vp~~S~~~i~g~~---~~~~i~~~v~~~g~eIi~~k---G~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAGA---RNIRRAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKRK---GATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC---BSCCCCCEEBCSST-TCEECGGGCCCBSCC---CHHHHHHHHHTTHHHHHHHH---SSCC
T ss_pred             CccHHHHHHHHHHccCC---CCcceeEEEecCCC-ccccccccccccCcc---chhHhHHHHHHHHHHhhhhc---ccee
Confidence            57999999999987654   445 8999999998 999999999986533   45688899999999999965   8999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424          266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW  343 (390)
Q Consensus       266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~  343 (390)
                      |++|.++++++++|++|.+   .++|++ +++|+| .+++|+|+||+||++|++ ++++ +|+++|+++|++++..|++.
T Consensus        72 ~gia~a~~~iv~aIl~d~~---~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~l-~L~~~E~~~l~~Sa~~ik~~  146 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRER  146 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCC---CceeeeEEeccccCCCCEEEEeEEEECCCceE-EEcC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999865   489997 789999 569999999999999985 8886 99999999999999777666


Q ss_pred             HHh
Q 016424          344 LGE  346 (390)
Q Consensus       344 l~~  346 (390)
                      +++
T Consensus       147 i~~  149 (152)
T d1ojua2         147 LEE  149 (152)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            654

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.96  E-value=5.7e-30  Score=226.20  Aligned_cols=152  Identities=27%  Similarity=0.454  Sum_probs=135.8

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----CCHHHHHHHHHhhccchhhhHhhhccCC
Q 016424          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (390)
Q Consensus       188 ~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~~~~l~~~v~~~~~eIi~~k~gkg  262 (390)
                      +||++||+++||+++|++|++|+++||||||+ +++|+||++++.+.     ++++.++++.++++++|.+|++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            69999999999999999999999999999999 89999999998642     567778899999999999999865 789


Q ss_pred             chhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHH
Q 016424          263 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCF  340 (390)
Q Consensus       263 ~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i  340 (390)
                      ++++++|.++++++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +||++|+++|++++..|
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l  156 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIV  156 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999998765   477776 679988 67999999999999999999996 89999999999999666


Q ss_pred             HHHHH
Q 016424          341 QDWLG  345 (390)
Q Consensus       341 ~~~l~  345 (390)
                      ++.++
T Consensus       157 ~~~i~  161 (163)
T d1guza2         157 DENCK  161 (163)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=6.9e-30  Score=223.71  Aligned_cols=143  Identities=22%  Similarity=0.377  Sum_probs=119.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----cEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG  109 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~-----~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d  109 (390)
                      ++++||+||||+|+||+++++.|++++++     .+|+|+|+++    +++.++|+.|+.... ...+..+++.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCcccccccCC
Confidence            46899999998899999999999876643     5899999988    345566667765432 2222223566899999


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEecCCCcccHHHHHHHHHHhC-CCCCCceeec
Q 016424          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  186 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a-~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG~  186 (390)
                      ||+||+++|.||+|||+|+|++.+|+++++++++.|.++||++ ++|++|||+|++|+++    ++.+ ++|++||+|+
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~----~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH----HHHcCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999999865 6888999999999865    6666 9999999985

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.96  E-value=1e-29  Score=225.59  Aligned_cols=150  Identities=15%  Similarity=0.278  Sum_probs=132.3

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-------------CCCHHHHHHHHHhhccchhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------------SFTQEETEYLTNRIQNGGTE  253 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-------------~~~~~~~~~l~~~v~~~~~e  253 (390)
                      |+||++||+.+||+++|+++++|+++|||+||+ +++|+||++++.+             .++...++++.+++++++.+
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            689999999999999999999999999999999 9999999987732             24556778999999999999


Q ss_pred             hHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 016424          254 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESG  331 (390)
Q Consensus       254 Ii~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~  331 (390)
                      |++.   ||++.|++|.++++++++++.+..   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|++
T Consensus        80 i~~~---kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~  152 (170)
T d1llda2          80 IING---KGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELA  152 (170)
T ss_dssp             HHTS---CCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHH
T ss_pred             HHhh---hccchhhhHHHHHHHHHHHHcCCC---ceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHH
Confidence            9984   588999999999999999999764   466665 789988 67999999999999999999996 99999999


Q ss_pred             HHHHhHHHHHHHH
Q 016424          332 LFCLLHLCFQDWL  344 (390)
Q Consensus       332 ~L~~~~~~i~~~l  344 (390)
                      +|++++..|++.+
T Consensus       153 ~l~~sa~~lk~~~  165 (170)
T d1llda2         153 ALKRSAETLKETA  165 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999996555443

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=2.1e-29  Score=224.43  Aligned_cols=153  Identities=27%  Similarity=0.391  Sum_probs=131.7

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  256 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~  256 (390)
                      |+||++||+++||+++|++|++|+++||||||+ +++|+||++++.+          .....++.+.....+.++.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999998 9999999998853          13445566777777778888887


Q ss_pred             hhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424          257 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC  334 (390)
Q Consensus       257 ~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~  334 (390)
                      .+ ++|+++|++|.++++++++++++.+   .+++++ +.+|+| .+++|||+||+||++|+++++++ +|+++|+++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~---~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~  155 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  155 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC---ceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            65 6899999999999999999999764   477777 678999 45899999999999999999996 89999999999


Q ss_pred             HhHHHHHHHHH
Q 016424          335 LLHLCFQDWLG  345 (390)
Q Consensus       335 ~~~~~i~~~l~  345 (390)
                      +++..|+.+.+
T Consensus       156 ~s~~~l~~~~~  166 (174)
T d1pzga2         156 KSVDDVMALNK  166 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99965555443

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.96  E-value=1.5e-29  Score=224.49  Aligned_cols=150  Identities=19%  Similarity=0.316  Sum_probs=133.0

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  256 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~  256 (390)
                      |+||++||+++||+++|++|++|+++|||+||+ +++|+||++++.+          .+..+++.++.+++++++.++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            689999999999999999999999999999998 9999999998853          35667788999999999999988


Q ss_pred             hhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424          257 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC  334 (390)
Q Consensus       257 ~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~  334 (390)
                      .|   |++.|++|.++++++++++.+.+   .+++++ +++++| .+++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        80 ~k---~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~  152 (171)
T d1ez4a2          80 LK---GATFYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQ  152 (171)
T ss_dssp             HH---SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             hh---hhHhHHHHHHHHHHHHHHhccCC---ceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            54   79999999999999999999765   366665 789998 67999999999999999999996 89999999999


Q ss_pred             HhHHHHHHHH
Q 016424          335 LLHLCFQDWL  344 (390)
Q Consensus       335 ~~~~~i~~~l  344 (390)
                      +++..|+..+
T Consensus       153 ~s~~~l~~~i  162 (171)
T d1ez4a2         153 DSAATLKKVL  162 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9996554444

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=3e-29  Score=226.70  Aligned_cols=169  Identities=17%  Similarity=0.117  Sum_probs=137.0

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCCCC-----CCHHH--HHHHHHhhccchhhhHhhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVEAK  258 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~--~~~l~~~v~~~~~eIi~~k  258 (390)
                      |.||++|||.+||+++||+|++|+ ++||||||+ +++|+||++++.+.     ..++.  .+++.+++++++++|++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            679999999999999999999997 568899999 99999999998541     33333  4789999999999999976


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCC-C--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424          259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC  334 (390)
Q Consensus       259 ~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~  334 (390)
                        ++++.+|+|.|+++++++|+++.+... +++++ +++|+ |  ++++|||+||++|++|+++++...+|+++|+++|+
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~~-~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~  156 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEGD-WFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK  156 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTTC-CEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCCc-eEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence              256777899999999999999986543 55665 67885 8  47999999999999999999753499999999999


Q ss_pred             HhHHHHHHHHHhhhhhcccchhcchHhHHHhhhhh
Q 016424          335 LLHLCFQDWLGESEERVSWKHSKGHLLQQEMKRCQ  369 (390)
Q Consensus       335 ~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~  369 (390)
                      .++..++++.+.+    .      .+..+++++|+
T Consensus       157 ~S~~eL~~e~~~v----~------~Llg~~~~~~~  181 (188)
T d7mdha2         157 KSEAELLAEKKCV----A------HLTGEGNAYCD  181 (188)
T ss_dssp             HHHHHHHHHHHHT----H------HHHTSSSCCCC
T ss_pred             HHHHHHHHHHHHH----H------HhhccccccCC
Confidence            9996554443322    1      24555667786

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.96  E-value=8.7e-30  Score=225.98  Aligned_cols=153  Identities=20%  Similarity=0.323  Sum_probs=132.6

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----C--------CCHHHHHHHHHhhccchhhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEV  254 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~--------~~~~~~~~l~~~v~~~~~eI  254 (390)
                      |+||++||+++||+++|++|++|+++||||||+ +++|+||++++++    .        ++.++++++.+++++.+.++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            689999999999999999999999999999999 9999999998743    1        23344578999999999999


Q ss_pred             HhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 016424          255 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGL  332 (390)
Q Consensus       255 i~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~  332 (390)
                      ++.   +|++.|++|.++++++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +||++|+++
T Consensus        80 ~~~---~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~  152 (169)
T d1y6ja2          80 IKN---KGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEA  152 (169)
T ss_dssp             HHH---TSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHH
T ss_pred             hhh---hhhhhhHHHHHHHHHHHHhccCCC---CceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHH
Confidence            884   489999999999999999999865   377776 789999 56999999999999999999996 899999999


Q ss_pred             HHHhHHHHHHHHHhh
Q 016424          333 FCLLHLCFQDWLGES  347 (390)
Q Consensus       333 L~~~~~~i~~~l~~~  347 (390)
                      |+.++..|+..+++.
T Consensus       153 l~~s~~~lk~~~~~v  167 (169)
T d1y6ja2         153 LRFSAEQVKKVLNEV  167 (169)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999997776666554

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=6.2e-29  Score=220.66  Aligned_cols=153  Identities=24%  Similarity=0.373  Sum_probs=135.9

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----------CCCHHHHHHHHHhhccchhhhH
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVV  255 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~eIi  255 (390)
                      |+||++||+++||+++|++|++|+++|||+||+ +++|+||++++.+           .++.+.++++.++++..+.+++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            679999999999999999999999999999998 9999999998742           2566778899999999999999


Q ss_pred             hhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 016424          256 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF  333 (390)
Q Consensus       256 ~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L  333 (390)
                      +.+   |++.+++|.++++++.+++.+.+   .+.+++ +++|+| .+++|||+||++|++|+++++++ +||++|+++|
T Consensus        81 ~~~---~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l  153 (172)
T d1a5za2          81 ERK---GATHYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAF  153 (172)
T ss_dssp             HHH---SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             ecc---ccchhhHHHHHHHHHHHHHhhcc---cceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHH
Confidence            854   78999999999999999998754   466665 678888 67999999999999999999997 8999999999


Q ss_pred             HHhHHHHHHHHHhh
Q 016424          334 CLLHLCFQDWLGES  347 (390)
Q Consensus       334 ~~~~~~i~~~l~~~  347 (390)
                      +.++..|+..+++.
T Consensus       154 ~~sa~~lk~~i~~l  167 (172)
T d1a5za2         154 RKSASILKNAINEI  167 (172)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998777777665

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=1.2e-28  Score=217.88  Aligned_cols=148  Identities=26%  Similarity=0.372  Sum_probs=131.1

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhh
Q 016424          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  257 (390)
Q Consensus       188 ~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~  257 (390)
                      +||++||+++||+++|++|++|+++|||+||+ +++|+||++++.+          ...+++++++.+++++++.++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            68999999999999999999999999999998 9999999987742          355677889999999999999984


Q ss_pred             hccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424          258 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL  335 (390)
Q Consensus       258 k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~  335 (390)
                         +|++.|++|.++++++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +||++|+++|++
T Consensus        81 ---~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~  153 (165)
T d1t2da2          81 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  153 (165)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             ---ccceeechhHHHHHHHHHHhhccc---cceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHH
Confidence               578999999999999999999865   366665 889999 67999999999999999999996 899999999999


Q ss_pred             hHHHHHHH
Q 016424          336 LHLCFQDW  343 (390)
Q Consensus       336 ~~~~i~~~  343 (390)
                      ++..|+++
T Consensus       154 s~~~lk~~  161 (165)
T d1t2da2         154 AIAETKRM  161 (165)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99655543

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.95  E-value=2.1e-28  Score=214.19  Aligned_cols=155  Identities=24%  Similarity=0.366  Sum_probs=135.4

Q ss_pred             eecccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC---CCCHHHHHHHHHhhccchhhhHhhhcc
Q 016424          184 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC---SFTQEETEYLTNRIQNGGTEVVEAKAG  260 (390)
Q Consensus       184 iG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~---~~~~~~~~~l~~~v~~~~~eIi~~k~g  260 (390)
                      || |+||++||+++||+++|++|++|+++|||+||+ +++|+||++.+.+   ....++++++.++++..+.++.+.   
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHh---
Confidence            46 899999999999999999999999999999999 9999999998743   356677888999999999998874   


Q ss_pred             CCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHH
Q 016424          261 AGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHL  338 (390)
Q Consensus       261 kg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~  338 (390)
                      +|++.+++|.++++++.+++.+.+.   +++++ ++.++| .+++|||+||++|++|+++++++ +|+++|+++|++++.
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~  151 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTGE---VLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE  151 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCCC---EEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhHhhhHhhhhcccc---ceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHH
Confidence            5789999999999999999987653   55555 778888 67999999999999999999996 999999999999997


Q ss_pred             HHHHHHHhh
Q 016424          339 CFQDWLGES  347 (390)
Q Consensus       339 ~i~~~l~~~  347 (390)
                      .|++.++++
T Consensus       152 ~L~~~~~~i  160 (161)
T d1o6za2         152 KLSDQYDKI  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            777766553

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=1.8e-28  Score=219.59  Aligned_cols=156  Identities=19%  Similarity=0.197  Sum_probs=130.0

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEe-ecccCceeeeccccCCCCCC-----------CCHHHHHHHHHhhccchhhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVV-GGHAGVTILPLLSQVKPPCS-----------FTQEETEYLTNRIQNGGTEV  254 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~Vi-G~Hg~~t~vp~~S~~~v~~~-----------~~~~~~~~l~~~v~~~~~eI  254 (390)
                      |+||++|||++||++|||+|++|+++|+ |+||+ +++|+||++++.+.           ++....+++.+++++++.+|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999987555 99999 99999999998531           22334578889999999999


Q ss_pred             HhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEE-eeeeC-CC--CCccEEEEeEEEcCCceEEEccCCCCCHHHH
Q 016424          255 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYES  330 (390)
Q Consensus       255 i~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~-s~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~  330 (390)
                      ++.|  ++++.|++|.|+++++++|+++.++.. ++++ .+.+| +|  ++++|||+||++|++|++++.++ +||++|+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~~-~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~  155 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEGE-FVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSR  155 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccCC-ceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHH
Confidence            9876  367889999999999999999887654 4444 36676 57  58999999999999999999997 8999999


Q ss_pred             HHHHHhHHHHHHHHHhh
Q 016424          331 GLFCLLHLCFQDWLGES  347 (390)
Q Consensus       331 ~~L~~~~~~i~~~l~~~  347 (390)
                      ++|+.++..|++.++..
T Consensus       156 ~~l~~Sa~~L~~~~~~~  172 (179)
T d5mdha2         156 EKMDLTAKELAEEKETA  172 (179)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999996554444433

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=218.97  Aligned_cols=151  Identities=17%  Similarity=0.227  Sum_probs=131.3

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEV  254 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eI  254 (390)
                      |.||++||+++||+++|+++++|+++|||+||+ +++|+||++++++            ....+.++++.+++++++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            689999999999999999999999999999999 9999999998853            122345678899999999999


Q ss_pred             HhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 016424          255 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESG  331 (390)
Q Consensus       255 i~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~  331 (390)
                      ++.+   +++.+++|.++++++++++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +||++|++
T Consensus        82 ~~~~---~~s~~a~a~~~~~~~~~~~~~~~---~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~  154 (172)
T d1i0za2          82 IKLK---GYTNWAIGLSVADLIESMLKNLS---RIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVA  154 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHH
T ss_pred             eecc---cccchHHHHHHHHHHHHHhcCCC---cccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHH
Confidence            9855   78999999999999999998754   588887 679999  46899999999999999999996 99999999


Q ss_pred             HHHHhHHHHHHHHH
Q 016424          332 LFCLLHLCFQDWLG  345 (390)
Q Consensus       332 ~L~~~~~~i~~~l~  345 (390)
                      +|++++..|+++.+
T Consensus       155 ~l~~Sa~~l~~~~~  168 (172)
T d1i0za2         155 QLKKSADTLWDIQK  168 (172)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999965555443

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=1.2e-28  Score=217.92  Aligned_cols=153  Identities=20%  Similarity=0.339  Sum_probs=125.7

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC----C---CHHHHHHHHHhhccchhhhHhhhc
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----F---TQEETEYLTNRIQNGGTEVVEAKA  259 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~----~---~~~~~~~l~~~v~~~~~eIi~~k~  259 (390)
                      |+||++||+++||++||++|++|+++|||+||+ +++|+||++++.+.    +   ....++++.+++++++.++++.  
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL--   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHh--
Confidence            789999999999999999999999999999999 99999999987531    1   1223567888888888888874  


Q ss_pred             cCCchhHHHHHHHHHHHHHHHcccCCCCceEEE-eeeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHh
Q 016424          260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLL  336 (390)
Q Consensus       260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~-s~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~  336 (390)
                       +|++.++.|.+++.++++++++.+   .++++ +++.++|  ++++|||+||++|++|+++++++ +||++|+++|+++
T Consensus        80 -k~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~S  154 (168)
T d1hyea2          80 -KGGSEFGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKS  154 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             -ccCccccchhhhhHHHHhhhccCC---CeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHH
Confidence             477889999999999999998765   35555 4777776  67999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHhh
Q 016424          337 HLCFQDWLGES  347 (390)
Q Consensus       337 ~~~i~~~l~~~  347 (390)
                      +..|++.+++.
T Consensus       155 a~~lk~~~~~~  165 (168)
T d1hyea2         155 AEIIKKYCEEV  165 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            97777766655

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=4.1e-28  Score=214.05  Aligned_cols=152  Identities=20%  Similarity=0.343  Sum_probs=131.1

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----------CCHHHHHHHHHhhccchhhhH
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----------FTQEETEYLTNRIQNGGTEVV  255 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----------~~~~~~~~l~~~v~~~~~eIi  255 (390)
                      |+||++||+.+||++||+++++|+++|||+||+ +++|+||++++++.           .....++++.++++..+.++.
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999998 99999999987431           123345788888888888888


Q ss_pred             hhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 016424          256 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF  333 (390)
Q Consensus       256 ~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L  333 (390)
                      ..|   |++.++++.++.+++.+++.+.+   .+++++ +++++| ++++|||+||++|++|+++++++ +||++|+++|
T Consensus        80 ~~~---~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L  152 (168)
T d1ldna2          80 EKK---GATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRF  152 (168)
T ss_dssp             HHH---SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             Hhh---ccccchHHHHHhhHHHhhhcccc---eeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHH
Confidence            754   78999999999999999998754   467765 678888 67999999999999999999997 9999999999


Q ss_pred             HHhHHHHHHHHHh
Q 016424          334 CLLHLCFQDWLGE  346 (390)
Q Consensus       334 ~~~~~~i~~~l~~  346 (390)
                      ++++..|+..+.+
T Consensus       153 ~~s~~~lk~~i~~  165 (168)
T d1ldna2         153 HHSAATLKSVLAR  165 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999777766654

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.95  E-value=2.2e-28  Score=216.17  Aligned_cols=155  Identities=16%  Similarity=0.234  Sum_probs=127.7

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC---------CCHHHHHHHHHhhccchhhhHhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS---------FTQEETEYLTNRIQNGGTEVVEA  257 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~---------~~~~~~~~l~~~v~~~~~eIi~~  257 (390)
                      |+||++||+++||++||++|++|+++||||||+ +++|+||++.+...         .....+.++..+.+.++.++...
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            689999999999999999999999999999998 89999999987531         12223345556666677777664


Q ss_pred             hccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424          258 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC  334 (390)
Q Consensus       258 k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~  334 (390)
                         +|++.+++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        82 ---~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~  154 (169)
T d1ldma2          82 ---KGYTSWAIGLSVADLAETIMKNLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQ  154 (169)
T ss_dssp             ---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ---ccchhhHHHHHHhhhhheecCCCC---ceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHH
Confidence               478999999999999999999765   477776 679998  46899999999999999999996 89999999999


Q ss_pred             HhHHHHHHHHHhhhhhccc
Q 016424          335 LLHLCFQDWLGESEERVSW  353 (390)
Q Consensus       335 ~~~~~i~~~l~~~~~~v~~  353 (390)
                      .++.    .|++..++++|
T Consensus       155 ~s~~----~l~~~~k~lkf  169 (169)
T d1ldma2         155 KSAT----TLWDIQKDLKF  169 (169)
T ss_dssp             HHHH----HHHHHHHTCCC
T ss_pred             HHHH----HHHHHHHhcCC
Confidence            9995    44555444443

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.95  E-value=8.8e-28  Score=211.50  Aligned_cols=152  Identities=21%  Similarity=0.245  Sum_probs=129.4

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----C--CHHHHHHHHHhhccchhhhHhhhc
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----F--TQEETEYLTNRIQNGGTEVVEAKA  259 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----~--~~~~~~~l~~~v~~~~~eIi~~k~  259 (390)
                      |.||++||+++||+++|++|++|+++|||+||+ +++|+||++++++.     .  .+..++++.+++++++.+|++.| 
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k-   79 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK-   79 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH-
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHH-
Confidence            679999999999999999999999999999999 99999999988531     1  22345799999999999999865 


Q ss_pred             cCCchhHHHHHHHHHHHHHHHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHH
Q 016424          260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLC  339 (390)
Q Consensus       260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~  339 (390)
                        |++.|++|.++.+++.++..+.+   .+.+++...+  .+++|||+||++|++|+++++++ +|+++|+++|++++..
T Consensus        80 --g~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~~~--~~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~  151 (163)
T d1hyha2          80 --GYTSYGVATSAIRIAKAVMADAH---AELVVSNRRD--DMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDY  151 (163)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECT--TTCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             --HhHHHhHHHHhhHHHHHhcCCcc---ceeeeceecC--CcceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHH
Confidence              78999999999999999998764   3555553212  35799999999999999999996 8999999999999988


Q ss_pred             HHHHHHhhh
Q 016424          340 FQDWLGESE  348 (390)
Q Consensus       340 i~~~l~~~~  348 (390)
                      |++.+++..
T Consensus       152 l~~~~~~~~  160 (163)
T d1hyha2         152 IQQRFDEIV  160 (163)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887777663

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=6.8e-28  Score=214.16  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=113.6

Q ss_pred             CCEEEEEcCCCCcHHHHH--HHHHhCCC--CcEEEEEeCCc--hHHHHHHHhccc----CCCeEEEEeCCCChhhhhCCC
Q 016424           41 GFKVAILGAAGGIGQPLA--MLMKINPL--VSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a--~~l~~~~~--~~eL~L~Di~~--~~g~a~DL~~~~----~~~~v~~~~~t~dl~~al~dA  110 (390)
                      .+||+|||| |++|.+.+  .++...+.  .+||+|+|+++  .++.++|+.|..    ....++... ++|++++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~-~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL-TLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee-cCCchhhcCCC
Confidence            379999999 98886544  45555543  47999999998  578888887642    234444433 56888999999


Q ss_pred             cEEEEcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 016424          111 DLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  170 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l--------------------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae  170 (390)
                      |+||+++|.++++|++|+++                    +.+|+++++++++.|+++|||||++++|||+|++|+++  
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~--  156 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV--  156 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH--
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH--
Confidence            99999999999988888766                    46999999999999999999999999999999998755  


Q ss_pred             HHHHhCCCCCCceeecc
Q 016424          171 VFKKAGTYDPKKLLGVT  187 (390)
Q Consensus       171 ~~~~~s~~p~~kviG~t  187 (390)
                        ++.  +|++||||+|
T Consensus       157 --~k~--~p~~kviGlC  169 (169)
T d1s6ya1         157 --LRY--TKQEKVVGLC  169 (169)
T ss_dssp             --HHH--CCCCCEEECC
T ss_pred             --HHH--CCCCCEEeeC
Confidence              565  5789999998

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.7e-27  Score=209.34  Aligned_cols=148  Identities=22%  Similarity=0.343  Sum_probs=125.7

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC------------CCHHHHHHHHHhhccchhhh
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEV  254 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~------------~~~~~~~~l~~~v~~~~~eI  254 (390)
                      |+||++||+++||+++|++|++|+++|||+||+ +++|+||++.+++.            ......+.+....+..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            679999999999999999999999999999999 89999999987531            11223457778888888888


Q ss_pred             HhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 016424          255 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESG  331 (390)
Q Consensus       255 i~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~  331 (390)
                      ...|   +++.+++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~k---~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~  154 (172)
T d2ldxa2          82 LDMK---GYTSWAIGLSVTDLARSILKNLK---RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEG  154 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHH
T ss_pred             hhcc---cchhHHHHHHHhHHHHhhcCCCc---cceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHH
Confidence            8754   78899999999999999998754   467776 678998  57999999999999999999996 99999999


Q ss_pred             HHHHhHHHHHH
Q 016424          332 LFCLLHLCFQD  342 (390)
Q Consensus       332 ~L~~~~~~i~~  342 (390)
                      +|++++..|+.
T Consensus       155 ~l~~s~~~lk~  165 (172)
T d2ldxa2         155 LLKKSADTLWN  165 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999954433

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.94  E-value=8.5e-29  Score=219.91  Aligned_cols=148  Identities=19%  Similarity=0.321  Sum_probs=127.7

Q ss_pred             ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----------CCHHHHHHHHHhhccchhhhH
Q 016424          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----------FTQEETEYLTNRIQNGGTEVV  255 (390)
Q Consensus       187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----------~~~~~~~~l~~~v~~~~~eIi  255 (390)
                      |+||++||+++||+++|+++++|+++||||||+ +++|+||++++.+.           +....++++.+++++++.+++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            689999999999999999999999999999999 99999999877431           222334677888899999998


Q ss_pred             hhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 016424          256 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF  333 (390)
Q Consensus       256 ~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L  333 (390)
                      +   ++|++.|++|.++++++.+++.+.+.   +++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~~~~---~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l  152 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILNDENA---VLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM  152 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHTCCC---CEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHH
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcCCCC---ccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHH
Confidence            7   56899999999999999999998653   66665 789999 56899999999999999999996 8999999999


Q ss_pred             HHhHHHHHH
Q 016424          334 CLLHLCFQD  342 (390)
Q Consensus       334 ~~~~~~i~~  342 (390)
                      ++++..|+.
T Consensus       153 ~~s~~~lk~  161 (172)
T d1llca2         153 QKSASQLKK  161 (172)
T ss_dssp             HTTTTTTTT
T ss_pred             HHHHHHHHH
Confidence            999954433

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=5.4e-27  Score=207.94  Aligned_cols=139  Identities=19%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHH--HHHhCC--CCcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhhhCCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGM  110 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~--~l~~~~--~~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dA  110 (390)
                      +|..||+|||| |++|.+.+.  ++...+  ..+||+|+|+++  +++.+.|+.+..  .....+... ++|+++|++||
T Consensus         1 ~k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~eal~~A   78 (167)
T d1u8xx1           1 KKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-TTDPEEAFTDV   78 (167)
T ss_dssp             CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-ESCHHHHHSSC
T ss_pred             CCCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-cCChhhccCCC
Confidence            46789999999 999987653  333333  258999999998  566777777643  223333322 46889999999


Q ss_pred             cEEEEcCCCCCCCCCCHHHHH--------------------HHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 016424          111 DLVIIPAGVPRKPGMTRDDLF--------------------NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  170 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~--------------------~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae  170 (390)
                      |+||+++|.++++|++|++++                    .+|+++++++++.|+++||+||++++|||+|++|+++  
T Consensus        79 D~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~--  156 (167)
T d1u8xx1          79 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT--  156 (167)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH--
T ss_pred             CEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH--
Confidence            999999999999999998875                    4679999999999999999999999999999998755  


Q ss_pred             HHHHhCCCCCCceee
Q 016424          171 VFKKAGTYDPKKLLG  185 (390)
Q Consensus       171 ~~~~~s~~p~~kviG  185 (390)
                        ++.  +|+.|||.
T Consensus       157 --~k~--~P~~rVI~  167 (167)
T d1u8xx1         157 --RRL--RPNSKILN  167 (167)
T ss_dssp             --HHH--STTCCEEE
T ss_pred             --HHH--CCcccccC
Confidence              565  68999974

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=5.4e-26  Score=201.84  Aligned_cols=157  Identities=19%  Similarity=0.185  Sum_probs=125.1

Q ss_pred             cccccHHHHHHHHHHHhCCCCCCCceE-EeecccCceeeeccccCCCCC----CC-CHH-HHHHHHHhhccchhhhHhhh
Q 016424          186 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPC----SF-TQE-ETEYLTNRIQNGGTEVVEAK  258 (390)
Q Consensus       186 ~t~Lds~R~~~~la~~l~v~p~~V~~~-ViG~Hg~~t~vp~~S~~~v~~----~~-~~~-~~~~l~~~v~~~~~eIi~~k  258 (390)
                      +|.||++|||++||++||++|++|+++ |||+||+ +++|+||++++.+    .+ .+. ...+..++....+.+++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999875 6799999 9999999999853    12 222 22344444455555666543


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424          259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL  335 (390)
Q Consensus       259 ~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~  335 (390)
                        ++++.+++|.++++++++++.+.++. .+++++ +++|+|  ++++|||+||+++++|++.+.++ +||++|+++|+.
T Consensus        80 --~~~s~~~~a~a~~~~~~~~~~~~~~~-~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~  155 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIRDWALGTPEG-DWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI  155 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHTBCCTT-CCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHH
T ss_pred             --ccCchhhHHHHHHHHHHHHhcccCCC-CceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHH
Confidence              47889999999999999999986544 478887 679998  67999999999987777777776 899999999999


Q ss_pred             hHHHHHHHHHhh
Q 016424          336 LHLCFQDWLGES  347 (390)
Q Consensus       336 ~~~~i~~~l~~~  347 (390)
                      ++..+++..+..
T Consensus       156 s~~~L~~~~e~v  167 (173)
T d1y7ta2         156 TAQELLDEMEQV  167 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            997666665544

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=2.1e-26  Score=203.11  Aligned_cols=137  Identities=16%  Similarity=0.233  Sum_probs=108.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHh--C--CCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKI--N--PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~--~--~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      |||+|||| |++|.+.++....  .  ..++||+|+|+++ ..+.+.|+.|.......+... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999999 9999999864332  2  2478999999998 445677887754332333333 45678999999999999


Q ss_pred             CCCCCCCCCCHHHHH--------------------HHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhC
Q 016424          117 AGVPRKPGMTRDDLF--------------------NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  176 (390)
Q Consensus       117 ag~p~k~g~~r~~l~--------------------~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s  176 (390)
                      +|.|++++++|++++                    .|+++++.++.+ +.++||+||++++|||+|++|+++    ++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~----~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV----RNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH----HHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH----HHh-
Confidence            999999988887653                    567788888866 778899999999999999998754    665 


Q ss_pred             CCCCCceeecc
Q 016424          177 TYDPKKLLGVT  187 (390)
Q Consensus       177 ~~p~~kviG~t  187 (390)
                       +|++|+||+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5788999998

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.92  E-value=7.9e-25  Score=193.73  Aligned_cols=153  Identities=15%  Similarity=0.095  Sum_probs=114.9

Q ss_pred             cccHHHHHHHHHHHhCCCCCCCce-EEeecccCceeeeccccCCCCCC------CC-HHHHHHHHHhhccchhhhHhhhc
Q 016424          188 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPCS------FT-QEETEYLTNRIQNGGTEVVEAKA  259 (390)
Q Consensus       188 ~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~t~vp~~S~~~v~~~------~~-~~~~~~l~~~v~~~~~eIi~~k~  259 (390)
                      .||++|||++||++||++|++|+. +|||+||+ +++|+||++++.+.      .+ ....+++.+.++..+.++.+.+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            389999999999999999999986 77799999 99999999998542      11 1122455666666667776655 


Q ss_pred             cCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHh
Q 016424          260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLL  336 (390)
Q Consensus       260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~  336 (390)
                      +++++.++.+.++..+..++.. ..+  .+++++ +++|+|  ++++|||+||++|++|++.+.++ +|+++|+++|+.+
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~~-~~~--~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s  155 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVLG-TAG--KWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVT  155 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHC-CTT--CCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHhC-CCc--cceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence            4444444544444445555544 333  367776 679998  68999999999999999999997 8999999999999


Q ss_pred             HHHHHHHHHh
Q 016424          337 HLCFQDWLGE  346 (390)
Q Consensus       337 ~~~i~~~l~~  346 (390)
                      +..++++.+.
T Consensus       156 ~~~L~~e~~~  165 (171)
T d1b8pa2         156 LNELLEEQNG  165 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9655555433

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.2e-25  Score=195.27  Aligned_cols=137  Identities=20%  Similarity=0.189  Sum_probs=108.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHH--HHHhCC-C-CcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhhhCCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~--~l~~~~-~-~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      +.|||+|||| |++|++.+.  .++..+ + .+||+|+|+++  +++.+.|+.|..  .....++.. ++|+++|++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~-~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK-TMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE-eCChhhcccCCC
Confidence            3689999999 999998654  344443 2 47999999998  678888888853  233444432 578999999999


Q ss_pred             EEEEcCC------------------CCCCCCCCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 016424          112 LVIIPAG------------------VPRKPGMTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (390)
Q Consensus       112 iVIi~ag------------------~p~k~g~~r~~l--------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t  165 (390)
                      +||++++                  .+++++++|.++        +.+|+++++++++.|+++||+||++++|||+|++|
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t  158 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT  158 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHH
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHH
Confidence            9998755                  466777777664        57999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhCCCCCCceee
Q 016424          166 PIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       166 ~i~ae~~~~~s~~p~~kviG  185 (390)
                      +++    ++.++   .|+||
T Consensus       159 ~~~----~k~~~---~k~iG  171 (171)
T d1obba1         159 TLV----TRTVP---IKAVG  171 (171)
T ss_dssp             HHH----HHHSC---SEEEE
T ss_pred             HHH----HHhcC---CCccC
Confidence            754    67665   48887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4e-08  Score=86.96  Aligned_cols=120  Identities=15%  Similarity=0.194  Sum_probs=84.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHH-----HHhcc---cC--------------CCeEEEEe
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA-----DISHM---DT--------------GAVVRGFL   98 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~-----DL~~~---~~--------------~~~v~~~~   98 (390)
                      +||+|||| |.+|+.+|..++..++  +++|||+++ ....+.     .+.+.   ..              ..+++.  
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~--   79 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT--   79 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE--
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc--
Confidence            49999999 9999999999999998  999999997 111111     11110   00              124554  


Q ss_pred             CCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCC
Q 016424           99 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  178 (390)
Q Consensus        99 ~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~  178 (390)
                       ++|+.++++|||+|+-+.              .+|.++-+++...+++++|.. .|+.||-..+...-++    ... -
T Consensus        80 -~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~i~~la----~~~-~  138 (192)
T d1f0ya2          80 -STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEH-TIFASNTSSLQITSIA----NAT-T  138 (192)
T ss_dssp             -ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTT-CEEEECCSSSCHHHHH----TTS-S
T ss_pred             -cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccC-ceeeccCcccccchhh----hhc-c
Confidence             358889999999999997              567889999999999999544 2347887765543221    222 2


Q ss_pred             CCCceeecc
Q 016424          179 DPKKLLGVT  187 (390)
Q Consensus       179 p~~kviG~t  187 (390)
                      .|.|++|+.
T Consensus       139 ~p~r~ig~H  147 (192)
T d1f0ya2         139 RQDRFAGLH  147 (192)
T ss_dssp             CGGGEEEEE
T ss_pred             CHhHEEeec
Confidence            467888774

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.67  E-value=5.5e-08  Score=86.38  Aligned_cols=129  Identities=16%  Similarity=0.159  Sum_probs=83.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHH------------HHHhcccCCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT------------ADISHMDTGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a------------~DL~~~~~~~~v~~~~~t~dl~~al  107 (390)
                      |||+|||+ |.||.++|..|+..+.  +++.||+|+.  ..+-            ..|.+......+..   ++|+.+++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~~i   74 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKKAV   74 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHHHH
Confidence            89999999 9999999999999987  9999999861  1111            11111111234554   36889999


Q ss_pred             CCCcEEEEcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHhCCCC
Q 016424          108 TGMDLVIIPAGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYD  179 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g-~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~p  179 (390)
                      ++||+++++.+.|.... ......+   ..+..++...+....++..+++- |-|.+.+..+...++.+.++..
T Consensus        75 ~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~  145 (202)
T d1mv8a2          75 LDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKK  145 (202)
T ss_dssp             HTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCC
T ss_pred             hhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccc
Confidence            99999999999986543 2211211   23444555555555677766654 6777777665555555544443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.57  E-value=3.8e-08  Score=86.64  Aligned_cols=121  Identities=18%  Similarity=0.200  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHH----HHH-HHhcc---c---------CCCeEEEEeCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG----VTA-DISHM---D---------TGAVVRGFLGQP  101 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g----~a~-DL~~~---~---------~~~~v~~~~~t~  101 (390)
                      +..||+|||| |.+|+.+|..++..+.  +++|||+++ ...    .+. .+.+.   .         ...+++..   +
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~---~   76 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT---L   76 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE---S
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc---c
Confidence            4568999999 9999999999999997  899999987 111    111 11111   0         01345542   3


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      ++ +++.+||+||.+.              .+|..+-+++.++|++++| +++  ++||-..+...-++   ...  -.|
T Consensus        77 ~~-~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~I--iaSnTS~l~i~~la---~~~--~~p  134 (186)
T d1wdka3          77 SY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAI--LASNTSTISISLLA---KAL--KRP  134 (186)
T ss_dssp             SS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCE--EEECCSSSCHHHHG---GGC--SCG
T ss_pred             cc-ccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCee--EEeccccccHHHHH---Hhc--cCc
Confidence            54 6799999999987              4678899999999999995 553  47888776653222   222  236


Q ss_pred             Cceeeccc
Q 016424          181 KKLLGVTM  188 (390)
Q Consensus       181 ~kviG~t~  188 (390)
                      .|++|+-.
T Consensus       135 ~r~~g~Hf  142 (186)
T d1wdka3         135 ENFVGMHF  142 (186)
T ss_dssp             GGEEEEEC
T ss_pred             hheEeecc
Confidence            77887643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.40  E-value=4.7e-07  Score=77.59  Aligned_cols=99  Identities=15%  Similarity=0.169  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcc--cC-C-----CeEEEEeCCCChhhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM--DT-G-----AVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~--~~-~-----~~v~~~~~t~dl~~al~dAD  111 (390)
                      .+||+|||| |.+|+.++..|..++.  ++.+||+++. .....+....  .. .     .....   ++|+.+++++||
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~aD   74 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL---TSDIGLAVKDAD   74 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEE---ESCHHHHHTTCS
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhh---hhhhHhHhcCCC
Confidence            369999999 9999999999999997  9999999862 2222222111  00 0     11111   357889999999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv  161 (390)
                      +||++...+                ...++++++..+- ++.+|+...|..
T Consensus        75 ~iii~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          75 VILIVVPAI----------------HHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             EEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEEEEEchh----------------HHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            999986322                2456777777775 677665554443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.33  E-value=1.1e-06  Score=76.28  Aligned_cols=97  Identities=24%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc----C---CCeEEEEeCCCChhhhhCCCcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----T---GAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~----~---~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      |||+|||| |..|+++|..|..++.  ++.||..+.....+..+....    .   ....... .++|+.+++++||+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF-WPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE-CGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccc-ccccHHHHHhccchhh
Confidence            89999999 9999999999998876  899998754333444453211    1   1222333 3678999999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++..                ...++++.+++..+-++..+++.|
T Consensus        77 ~avp----------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGVS----------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECSC----------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccc----------------hhhhHHHHHhhccccccceecccc
Confidence            9752                123667777777777666555554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.24  E-value=1e-06  Score=77.53  Aligned_cols=71  Identities=14%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh--cc--------cCCCeEEEEeCCCChhhhhC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HM--------DTGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~--~~--------~~~~~v~~~~~t~dl~~al~  108 (390)
                      ..|.||+|||| |..|+++|..|..++.  ++.||++++.  .+..+.  +.        ..+.+++.   ++|++++++
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~--~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~   76 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEE--EVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYN   76 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHH--HHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHT
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHH--HHHHHhhccccccccccccccccccc---chhhhhccC
Confidence            34568999999 9999999999999876  8999999862  222232  21        12345665   468999999


Q ss_pred             CCcEEEEcC
Q 016424          109 GMDLVIIPA  117 (390)
Q Consensus       109 dADiVIi~a  117 (390)
                      +||+||++.
T Consensus        77 ~ad~iiiav   85 (189)
T d1n1ea2          77 GAEIILFVI   85 (189)
T ss_dssp             TCSCEEECS
T ss_pred             CCCEEEEcC
Confidence            999999975

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.23  E-value=2.9e-06  Score=72.08  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=61.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      |||+|||+ |.+|+.++..|...+.  +|+.||+++ ....+.++.-    .. ..   .++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~----~~-~~---~~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQL----VD-EA---GQD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTS----CS-EE---ESC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhc----cc-ee---eee-cccccccccccccC--c
Confidence            79999999 9999999999998887  999999986 2222222211    11 11   134 47899999999975  2


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN  159 (390)
                                    ...+.++.+.+..+- |+.+++..++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          223556666666664 6776665543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.4e-06  Score=73.42  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      |||+|||+ |.+|+.++..|...+.  ++.++|+++.............. ......   .+..+++.++|+||++...+
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~iii~vka~   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT---ANDPDFLATSDLLLVTLKAW   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE---ESCHHHHHTCSEEEECSCGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc---cchhhhhcccceEEEeeccc
Confidence            89999999 9999999999999887  99999998721111111111111 112221   23358899999999987332


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST  164 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~  164 (390)
                      .                ..+..+.+..+ .++..|+.+.|=++..
T Consensus        75 ~----------------~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 Q----------------VSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             G----------------HHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             c----------------hHHHHHhhccccCcccEEeeccCcccHH
Confidence            1                34556666655 4788888888877654

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=3.9e-05  Score=70.14  Aligned_cols=70  Identities=9%  Similarity=0.033  Sum_probs=55.3

Q ss_pred             CchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          262 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       262 g~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                      +...++  ..++++++||.+|.+.   ++.++ .++|.+   |+++++++||+|+++|+.++-- ++|++...+++..-.
T Consensus       128 ~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~~  201 (253)
T d1up7a2         128 GGSMYS--TAAAHLIRDLETDEGK---IHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAVK  201 (253)
T ss_dssp             TTTTHH--HHHHHHHHHHHSSSCE---EEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHHH
T ss_pred             cCcchH--HHHHHHHHHHHcCCCc---EEEEeCCCcCcCCCCChhhheEEEEEecCCccccccc-CCCcHHHHHHHHHHH
Confidence            344454  7889999999998763   44455 567775   7899999999999999999765 799999888877544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.87  E-value=1.5e-05  Score=69.47  Aligned_cols=109  Identities=18%  Similarity=0.257  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc------------cc--CCCeEEEEeCCCChhhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH------------MD--TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~------------~~--~~~~v~~~~~t~dl~~al  107 (390)
                      |||+|||. |.||.++|..++ .+.  +++.||+++.  ....|..            ..  .....+.   +++...++
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~--~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~---~~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHH--HHHHHhhcccccchhhHHHHhhhhhhhhhc---cchhhhhh
Confidence            89999999 999999997665 465  9999999971  1111111            00  1223333   24557889


Q ss_pred             CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCccc
Q 016424          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNST  164 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPvd~~  164 (390)
                      .++|+|+++.+.|........     ....+....+.+....++..+++-| -|.+..
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~  124 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIKSTIPIGFI  124 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEECSCCCTTHH
T ss_pred             hccccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEeeeecCceee
Confidence            999999999877754322111     1234455556666667777655543 444443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.8e-05  Score=65.22  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~  116 (390)
                      ++||+|+||+|.+|+.++..|..++.  ++.+++.+..+     +.... ...++.+.+.    +++.++++++|+||.+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~-----~~~~~-~~~~~~~~gD~~d~~~l~~al~~~d~vi~~   74 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhh-----ccccc-ccccccccccccchhhHHHHhcCCCEEEEE
Confidence            57999999999999999998888886  89999987521     11111 1233333332    4567889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~  149 (390)
                      .|.........     .+....+.+.+.+.+.+
T Consensus        75 ~g~~~~~~~~~-----~~~~~~~~l~~aa~~~~  102 (205)
T d1hdoa_          75 LGTRNDLSPTT-----VMSEGARNIVAAMKAHG  102 (205)
T ss_dssp             CCCTTCCSCCC-----HHHHHHHHHHHHHHHHT
T ss_pred             eccCCchhhhh-----hhHHHHHHHHHHHHhcC
Confidence            87643222221     22334455666666665

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.76  E-value=4.2e-05  Score=64.63  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||. |.+|++++..|...+.  +|..||++..  .+.++....  .  ..   ..+..+++++||+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~--~--~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAG--A--ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT--C--EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhh--h--hh---cccHHHHHhCCCeEEEEc
Confidence            79999999 9999999999999887  8999999862  222333221  1  11   246789999999999985

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.74  E-value=0.00013  Score=61.49  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |+||+|||+ |.+|.+++..|+..+...+|+.||.+. ....+.++.-.    . ...  +........++|+||++.- 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~----~-~~~--~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII----D-EGT--TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC----S-EEE--SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc----h-hhh--hhhhhhhccccccccccCC-
Confidence            457999999 999999999999988777899999986 33333333221    1 111  2222345579999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  160 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNP  160 (390)
                                     ...+.++.+.+..+ .++.+++-++.-
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------chhhhhhhhhhhccccccccccccccc
Confidence                           12244455555554 467777666543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.65  E-value=0.00017  Score=60.78  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |+||+|||. |.+|++++..|...+.  ++..||++..  ...++....   ...    ..++.++++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            579999999 9999999999999987  9999999752  223343322   122    235689999999999985

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=9.9e-05  Score=68.85  Aligned_cols=113  Identities=17%  Similarity=0.150  Sum_probs=75.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC--CCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~--dADiV  113 (390)
                      |||.|+||+|.||+.++..|...+.  +++.+|...  .......+.+.. ...++.+.+. +   .+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            8999999999999999999988886  899999743  222222232222 1233333321 2   3445566  78999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          114 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       114 Ii~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      |-+|+.+..+-  +...+.+..|+.-.+.+.+.+.++...-+|..-
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~S  123 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecC
Confidence            99887542111  234567888999999999999998766544433

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3.7e-05  Score=68.38  Aligned_cols=107  Identities=18%  Similarity=0.067  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE----eCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~----~~t~dl~~al~dADiVIi~  116 (390)
                      ++||.|+||+|.+|+.++..|..++.+.+|.+++.+.........      ..+...    ....++.++++++|+|+.+
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~------~~i~~~~~D~~~~~~~~~~~~~~d~vi~~   87 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAY------KNVNQEVVDFEKLDDYASAFQGHDVGFCC   87 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGG------GGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccc------ceeeeeeeccccccccccccccccccccc
Confidence            358999999999999999988888877899999986511000000      111111    1124677889999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~i  154 (390)
                      +|... ......++...|......+++...+...+-++
T Consensus        88 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi  124 (232)
T d2bkaa1          88 LGTTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN  124 (232)
T ss_dssp             CCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccc-cccchhhhhhhcccccceeeecccccCccccc
Confidence            87542 12233455667888888888888776655433

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.49  E-value=8e-05  Score=62.44  Aligned_cols=63  Identities=17%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||+ |.+|++++..|...+.  ++.++|.+.  ....+..+.       +..   +++..+++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~~~~l~~~~g-------~~~---~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERSKEIAEQLA-------LPY---AMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHHHHHHHHHT-------CCB---CSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHhHHhhccccc-------eee---echhhhhhhccceeeeec
Confidence            79999999 9999999998887765  899999875  222222221       111   246788999999999986

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00038  Score=58.23  Aligned_cols=95  Identities=11%  Similarity=0.012  Sum_probs=60.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      |+||+|+||+|.||+-+...|..++  ...+|+++..+...+..-....    ..+.... ..+ .++++++|+||++.+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~----~~~~~~~-~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGG----TTGTLQD-AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGT----CCCBCEE-TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccC----Cceeeec-ccc-hhhhhcCcEEEEecC
Confidence            5699999999999999997666554  4678998877652221111111    1111111 233 367899999999873


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                                      ..+.+++++.+.+...+++||-.
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~VID~   97 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYWIDA   97 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             ----------------chHHHHhhHHHHhcCCCeecccC
Confidence                            34566777777776666655443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=97.30  E-value=0.00029  Score=64.41  Aligned_cols=114  Identities=21%  Similarity=0.220  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCC--cEEEEc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGM--DLVIIP  116 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dA--DiVIi~  116 (390)
                      ||.|+||+|.||+.++..|..++.  +|+.+|.-...+....+.......+++.+.+.    .++.++++++  |+||-+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            899999999999999999988886  88888853311111112111112345554432    2345566655  999998


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |+....+.  .+-.+....|+.-.+.+.+...+....-.++..|
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            86543222  2335667789999999999999888666565554

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.28  E-value=0.00027  Score=60.12  Aligned_cols=74  Identities=12%  Similarity=0.201  Sum_probs=47.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .|||.|||. |.+|++++..|...+.  +++.||++..  .....+..+....+.........++...+.+++.+++..
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            489999999 9999999999999987  8999999862  223333222222234443221123445556666666654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.23  E-value=0.00039  Score=60.02  Aligned_cols=81  Identities=15%  Similarity=0.161  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEE-EeCCCChhhhhCCCcEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVI  114 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~-~~~t~dl~~al~dADiVI  114 (390)
                      .-+.++|.|+||+|++|..++..|++.+.  ++++.|++.  ....+..+........... .+..+++++++.++|+||
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            45667999999999999999999999986  899999987  3334444433211111111 111246778899999999


Q ss_pred             EcCCCC
Q 016424          115 IPAGVP  120 (390)
Q Consensus       115 i~ag~p  120 (390)
                      ..+|.+
T Consensus        98 n~Ag~g  103 (191)
T d1luaa1          98 TAGAIG  103 (191)
T ss_dssp             ECCCTT
T ss_pred             ecCccc
Confidence            998864

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.23  E-value=0.00044  Score=63.74  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=77.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCC----CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINP----LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~----~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiV  113 (390)
                      |||.|+||+|.||+.++..|..++    ..+++..+|.....+....+........++.+.+.    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            799999999999999999888765    25688888876422222223332223455554432    1334567899999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          114 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       114 Ii~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      +..|+.+..+.  ....+.+..|+.....+.+.+.++...- +|..
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~  125 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHV  125 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEE
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEe
Confidence            99987654322  2334567789999999999999887544 4434

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00068  Score=62.43  Aligned_cols=110  Identities=15%  Similarity=0.070  Sum_probs=73.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~  121 (390)
                      +||.|+||+|.+|+.++..|...+.  +|+.+|.... +....+.+......+..... +.++.++.++|+||-+|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELINH-DVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEEC-CTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEeh-HHHHHHHcCCCEEEECcccCC
Confidence            5999999999999999999888876  8888886321 00011222222234444432 344567789999998887543


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          122 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       122 k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      -+  .....+.+..|+.....+.+.+.+...  .+|.+
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~  113 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLA  113 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEE
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEE
Confidence            11  134556778899999999999888764  45544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.14  E-value=0.00024  Score=59.13  Aligned_cols=65  Identities=15%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||++||+ |.+|++++..|...+ ..++.++|.+..  ...++....   .++..   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~-~~~i~v~~r~~~--~~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQG-GYRIYIANRGAE--KRERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHC-SCEEEEECSSHH--HHHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCC-CCcEEEEeCChh--HHHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            79999999 999999998665544 248999999862  112232211   23332   233 5689999999986

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.0013  Score=60.22  Aligned_cols=65  Identities=14%  Similarity=0.141  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          269 AYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       269 A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                      +..++++++||.+|.+.   ++.++ .++|.+   |+|++++|||+|+++|+.++-. ++|++...+++....
T Consensus       145 ~e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~~  213 (270)
T d1s6ya2         145 SDAACSLISSIYNDKRD---IQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQQIK  213 (270)
T ss_dssp             HHHHHHHHHHHHHTCCC---EEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEECCceEeeec-CCCcHHHHHHHHHHH
Confidence            37889999999998763   44555 567765   7899999999999999999865 799999998887544

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.00034  Score=65.45  Aligned_cols=108  Identities=17%  Similarity=0.033  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEe--CCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~--~t~dl~~al~dADiVIi  115 (390)
                      ..++|||.|+||+|.||+.++..|..++.  +++.+|.........++.    ..+.....  ...++.+++++.|.||.
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~Vih   85 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFN   85 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcc----cCcEEEeechhHHHHHHHhhcCCeEee
Confidence            45789999999999999999999998887  888899765211111111    11222110  01244567889999999


Q ss_pred             cCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016424          116 PAGVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPN  151 (390)
Q Consensus       116 ~ag~p~k~---g~~r~~l~~~N~~ii~~ia~~I~~~~p~  151 (390)
                      +++.....   ...-......|......+.....+.+-.
T Consensus        86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk  124 (363)
T d2c5aa1          86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK  124 (363)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             cccccccccccccccccccccccchhhHHHHhHHhhCcc
Confidence            87654321   2234455677888888888888877644

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00092  Score=61.73  Aligned_cols=105  Identities=16%  Similarity=0.113  Sum_probs=71.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC----hhhhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d----l~~al~dADiVIi~  116 (390)
                      |||.|+||+|.||+.++..|+.++. .+|+.+|.... +    ..+.....+++.+.+. ++    .+.+.+++|+||-.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~-~~V~~ld~~~~-~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSD-A----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCG-G----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCc-c----hhhhccCCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            7999999999999999988877662 27888898641 1    1111112455555432 12    23478899999999


Q ss_pred             CCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 016424          117 AGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNA  152 (390)
Q Consensus       117 ag~p~k~g~--~r~~l~~~N~~ii~~ia~~I~~~~p~a  152 (390)
                      |+....++.  .-...+..|+.....+.+.+.+....-
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~  112 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI  112 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE
T ss_pred             cccccccccccCCccccccccccccccccccccccccc
Confidence            876543221  223567889999999999988876543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.04  E-value=0.0004  Score=57.68  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=46.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |||+|||. |.+|+.++..|..+++  ++..+|.+..... .......   .+..     +..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~-~~~~~~~---~~~~-----~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPST-IERARTV---GVTE-----TSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHH-HHHHHHH---TCEE-----CCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHH-HHhhhcc---cccc-----cHHHHHhhcCeEEEEe
Confidence            79999999 9999999999999987  8899997762111 1111111   1221     2368899999999985

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.01  E-value=0.002  Score=54.64  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag~p  120 (390)
                      ..|+|||. |.+|++++..|...+.  +++.||++..  .+.++..... ...........++.+++.++|.+++.... 
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~-   76 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVS--KVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKA-   76 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTH--HHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCT-
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHH--HHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCc-
Confidence            37999999 9999999999999987  8999999862  2233332211 12222221124566889999999997521 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                                    .+.+.++...+.... |+.++|..|
T Consensus        77 --------------~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          77 --------------GQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             --------------THHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             --------------hHHHHHHHHHHHhccccCcEEEecC
Confidence                          223445555565555 556666554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.01  Score=53.15  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~al  107 (390)
                      .+.+.|.||+++||..++..|++.+.  .|++.|+++  +...+.++.......++..+... +|          ..+.+
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34678889999999999999999987  899999987  45566667655433455544321 22          22335


Q ss_pred             CCCcEEEEcCCCCC-CC--CCCHH---HHHHHH----HHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 TGMDLVIIPAGVPR-KP--GMTRD---DLFNIN----AGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~-k~--g~~r~---~l~~~N----~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      ..-|++|..+|... .+  ..+..   ..+..|    ....+.+.+.+.+.. .++.|++++
T Consensus        88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~is  149 (257)
T d1xg5a_          88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININ  149 (257)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred             CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence            67899999988643 22  12222   223334    455667777776665 467777775

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.92  E-value=0.00054  Score=55.45  Aligned_cols=98  Identities=21%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hh-hhhCCCcEEEEc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LE-NALTGMDLVIIP  116 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~-~al~dADiVIi~  116 (390)
                      |||.|+|+ |.+|+.++..|...+.  +++++|.|+.  .+.++.... ...  .+.|. +|   +. ..+++||.++.+
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~--~~~~~~~~~-~~~--vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKD--ICKKASAEI-DAL--VINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHHHHC-SSE--EEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChh--hhhhhhhhh-hhh--hccCcccchhhhhhcChhhhhhhccc
Confidence            89999999 9999999999998887  8999999872  112222111 111  12221 22   22 236899999987


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      ....           ..|+- +   +...++++++-++..+.||..
T Consensus        73 t~~d-----------~~N~~-~---~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          73 TGKE-----------EVNLM-S---SLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             CSCH-----------HHHHH-H---HHHHHHTTCCCEEEECSSTTH
T ss_pred             CCcH-----------HHHHH-H---HHHHHHcCCceEEEEecCHHH
Confidence            4221           34542 2   223345777766666667653

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=96.91  E-value=0.00098  Score=61.89  Aligned_cols=111  Identities=17%  Similarity=0.126  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVII  115 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi  115 (390)
                      .||||.|+||+|.||+.++..|...+.--.++..|.....+.-..+.... ..+++.+.+.    ..+.+++++.|.|+.
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~-~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhh-cCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            47999999999999999999888776533566666432111111112211 2455554432    345677899999999


Q ss_pred             cCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016424          116 PAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN  151 (390)
Q Consensus       116 ~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~  151 (390)
                      .++....+.  .+..+.+..|+.....+...+.+....
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k  117 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR  117 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCE
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhcccccc
Confidence            886654332  123456778999999999888888753

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.91  E-value=0.0016  Score=54.32  Aligned_cols=94  Identities=12%  Similarity=0.039  Sum_probs=60.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      |||+||||+|.+|+-+...|...+  ...+|.++.-....|...+   .. ........ ..| .+.++++|+|+.+.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~---~~-~~~~~~~~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN---FG-KDAGMLHD-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC---SS-SCCCBCEE-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc---cC-Ccceeeec-ccc-hhhhccccEEEEecC-
Confidence            799999999999999997665433  4668887766542222111   11 11111111 234 467899999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                                     -.+.+++++.+.+.+.+++||=.
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~VIDl   96 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYWIDA   96 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEEEES
T ss_pred             ---------------chHHHHHhHHHHHcCCceEEEeC
Confidence                           23466888888888877766533

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.84  E-value=0.00061  Score=56.67  Aligned_cols=46  Identities=20%  Similarity=0.319  Sum_probs=37.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD   89 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~   89 (390)
                      |||+||||+|++|.+++..|+..+.  +|+++++++  +...+.++....
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~~~~   48 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIA   48 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            8999996669999999999999998  999999987  344555555443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.84  E-value=0.0094  Score=54.97  Aligned_cols=108  Identities=13%  Similarity=0.023  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhccc-CCCeEEEEeC----CCChhhhhCCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMD-TGAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~-~~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      .+..||.|+||+|.||+.++..|...+.  +|+....+. .......+-+.. .......+.+    ...+.++++++|.
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            4467999999999999999998888886  766555544 111111111111 1112222211    2345578999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~  149 (390)
                      |+-.++... ...+.......|+.-...+.+.+.++.
T Consensus        87 v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          87 VAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             EEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhhhccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence            999876543 344555666778888888888888764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0014  Score=58.79  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      +.+++.|.||++++|..++..|+..+.  +|++.|+++  +...+.++..... ..++.-...-+...+.+..-|++|..
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            346888999999999999999999987  899999987  3334444432210 01111000001122345688999999


Q ss_pred             CCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          117 AGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       117 ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|......   .+..   ..+..|+    ...+.+++.+.+....+.|++++
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~is  135 (244)
T d1pr9a_          84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVS  135 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             cccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecc
Confidence            88754221   2332   2344443    35566666665556667777775

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.0015  Score=58.45  Aligned_cols=110  Identities=14%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCCh------hhhhCCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL------ENALTGMD  111 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~dl------~~al~dAD  111 (390)
                      .+++.|.||++++|..++..|+..+.  +|++.|.++  +...+.++....      .+. .-+|.      -+.+..-|
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~------~~~~Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE------PVCVDLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE------EEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe------EEEEeCCCHHHHHHHHHHcCCCe
Confidence            46888889999999999999999987  899999986  333444443221      111 11121      12345789


Q ss_pred             EEEEcCCCCCC-C--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRK-P--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k-~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ++|..+|.... +  .++..+   .+..|+    .+.+...+.+.+....+.+|+++
T Consensus        77 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~is  133 (242)
T d1cyda_          77 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS  133 (242)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             EEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccc
Confidence            99999987542 2  123332   344443    44455566655556667777765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.78  E-value=0.0012  Score=56.24  Aligned_cols=80  Identities=21%  Similarity=0.250  Sum_probs=55.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ..++-||+|||| |-+|...+...+..+-  ++..+|.+. ......+....  ..... ......+++++++||+||-+
T Consensus        29 gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--~~~~~-~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          29 GVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELL-YSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEE-ECCHHHHHHHHHTCSEEEEC
T ss_pred             CCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--cceee-hhhhhhHHHhhccCcEEEEe
Confidence            678899999999 9999998888777664  899999987 22222222111  11222 22234678999999999999


Q ss_pred             CCCCCCC
Q 016424          117 AGVPRKP  123 (390)
Q Consensus       117 ag~p~k~  123 (390)
                      +-+|-++
T Consensus       103 alipG~~  109 (168)
T d1pjca1         103 VLVPGRR  109 (168)
T ss_dssp             CCCTTSS
T ss_pred             eecCCcc
Confidence            8776543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.74  E-value=0.0017  Score=61.29  Aligned_cols=115  Identities=15%  Similarity=0.124  Sum_probs=74.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH------------------HHHHhcccCCCeEEEEeCC-C
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------------------TADISHMDTGAVVRGFLGQ-P  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~------------------a~DL~~~~~~~~v~~~~~t-~  101 (390)
                      .|||.|+||+|.+|+.++..|.+.+.  +|+.+|.-.....                  ...+... ...+++.+.+. +
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCC
Confidence            47999999999999999999999887  8999983211000                  0011111 12345554432 1


Q ss_pred             ---ChhhhhCC--CcEEEEcCCCCCCCC--CCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          102 ---QLENALTG--MDLVIIPAGVPRKPG--MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       102 ---dl~~al~d--ADiVIi~ag~p~k~g--~~r---~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                         .+.+++++  .|+|+=.|+...-+.  .++   .+....|+.-...+.+.+.+++.+..++..|
T Consensus        78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~s  144 (393)
T d1i24a_          78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG  144 (393)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecc
Confidence               23445554  489998887543221  222   3456789999999999999999888776665

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.72  E-value=0.012  Score=52.50  Aligned_cols=113  Identities=22%  Similarity=0.336  Sum_probs=73.3

Q ss_pred             CEEE-EEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           42 FKVA-ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        42 ~KI~-VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      +||+ |.||++++|..++..|+..+.  .|++.|+++  ++..+.++.+..  .++..+.. -+|.          .+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            4775 559999999999999999987  899999987  455566666532  23443322 1221          2234


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|.... +  .++..   ..+..|+    ...+...+.+.+....+.|++++
T Consensus        77 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~is  137 (255)
T d1gega_          77 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINAC  137 (255)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             CCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcccccccccc
Confidence            579999999886432 2  12332   2344453    44556666677777778777775

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.0034  Score=57.43  Aligned_cols=65  Identities=17%  Similarity=0.151  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424          269 AYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH  337 (390)
Q Consensus       269 A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~  337 (390)
                      +..++++++||.+|.+.   ++.++ .++|.+   |+|+++++||+|+++|+.++-- ++|++...++++...
T Consensus       152 ~e~av~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~k  220 (276)
T d1u8xx2         152 ASYIVDLARAIAYNTGE---RMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLMEQQV  220 (276)
T ss_dssp             THHHHHHHHHHHHTCCE---EEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCc---EEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeec-CCCcHHHHHHHHHHH
Confidence            36778999999998753   44444 567765   7899999999999999999765 799999988887444

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.63  E-value=0.0067  Score=51.28  Aligned_cols=138  Identities=18%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ..+.++|.|+|+ |+.+.++++.|...+  .+|++++.+.  ++..+.++...   ..+....  .+ ...+.++|+||.
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~~~~~~diiIN   85 (171)
T d1p77a1          15 LRPNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SIPLQTYDLVIN   85 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GCCCSCCSEEEE
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cccccccceeee
Confidence            345679999999 999999999988754  5899999986  34455555432   2344332  12 245789999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc--EEEEecCCCcccHHHHHHHHHHhCCCCCCcee-ecccccHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA--TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTMLDVV  192 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a--~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~Lds~  192 (390)
                      +......+...         +...+   .+   .++.  +=++|+||..+.  ++. ..++.+   ..+++ |+.+| ..
T Consensus        86 ~tp~g~~~~~~---------~~~~~---~~---~~~~~~~D~vy~~p~~T~--~l~-~A~~~g---~~~v~~Gl~Ml-~~  143 (171)
T d1p77a1          86 ATSAGLSGGTA---------SVDAE---IL---KLGSAFYDMQYAKGTDTP--FIA-LCKSLG---LTNVSDGFGML-VA  143 (171)
T ss_dssp             CCCC----------------CCCHH---HH---HHCSCEEESCCCTTSCCH--HHH-HHHHTT---CCCEECSHHHH-HH
T ss_pred             ccccccccccc---------chhhh---hh---cccceeeeeeccCcccHH--HHH-HHHHcC---CCcccCcHHHH-HH
Confidence            85332211110         00001   11   1233  335678986532  221 123332   24687 99876 34


Q ss_pred             HHHHHHHHHhCCCC
Q 016424          193 RANTFVAEVLGLDP  206 (390)
Q Consensus       193 R~~~~la~~l~v~p  206 (390)
                      +.....--..|+.|
T Consensus       144 Qa~~~f~iwtg~~~  157 (171)
T d1p77a1         144 QAAHSFHLWRGVMP  157 (171)
T ss_dssp             HHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHCCCC
Confidence            44444445556544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.0044  Score=50.81  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=55.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ..++||+|||+.|.+|..++..|...++  ++..||++...                      +..+.+.++|+++++.-
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~~   62 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVP   62 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhccccccccc
Confidence            4567999999449999999999999998  99999987521                      12356788899988752


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      ..                .+.++...+..+. ++++++-.+
T Consensus        63 ~~----------------~~~~v~~~~~~~~~~~~iiiD~~   87 (152)
T d2pv7a2          63 IN----------------LTLETIERLKPYLTENMLLADLT   87 (152)
T ss_dssp             GG----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             hh----------------hheeeeecccccccCCceEEEec
Confidence            21                2334444555554 566666554

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.58  E-value=0.0069  Score=55.66  Aligned_cols=170  Identities=15%  Similarity=0.029  Sum_probs=98.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hH--HHHHHHhcccCCCeEEEEeCC-C---ChhhhhCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TP--GVTADISHMDTGAVVRGFLGQ-P---QLENALTGM  110 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~--g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~dA  110 (390)
                      ++++|.|+||+|.+|+.++..|...+.  ++..+|...   ..  .....+........++...+. .   .......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            456899999999999999999999887  899998643   11  111222211112344444332 1   223467788


Q ss_pred             cEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------cccHHHHHHHHHHhCCCCCCc
Q 016424          111 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDPKK  182 (390)
Q Consensus       111 DiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv------d~~t~i~ae~~~~~s~~p~~k  182 (390)
                      |+|+..+....-+  ..+....+..|+.....+.+.+.+.....+|..-|.-+      ...+        ......|..
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~~~p~~  164 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV--------EDTIGKPLS  164 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC--------TTCCCCCCS
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCcc--------CCCCCCCCC
Confidence            8888876544322  23445677889999999999998887655554444211      1111        011122333


Q ss_pred             eeecccccHHHHHHHHHHHhCCCCCCCc-eEEeecccC
Q 016424          183 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (390)
Q Consensus       183 viG~t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~  219 (390)
                      .-|.+=+...++-...++..+++.--++ ..|.|.+++
T Consensus       165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            3344323334444555666677665556 347776543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.55  E-value=0.018  Score=51.50  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=70.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|++.  ++..+.++..     ++..+.. -+|.          .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            34677889999999999999999986  899999986  4445555532     2222211 1221          1223


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|.... +  ..+..   ..+..|+    ...+.+++.+.+....+.|++++
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~is  138 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMA  138 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCcccccc
Confidence            478999999986542 2  12332   3355554    44556667666666677787775

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.014  Score=52.18  Aligned_cols=114  Identities=15%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh----------hhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL----------ENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~a  106 (390)
                      +.+.+.|.||++++|..++..|+..+.  .|++.|+++  +...+.++.+.. ..++..+... +|.          .+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788889999999999999999997  899999987  344455564432 2334333221 121          123


Q ss_pred             hCCCcEEEEcCCCCCCCC---CCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEe
Q 016424          107 LTGMDLVIIPAGVPRKPG---MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLI  157 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g---~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~  157 (390)
                      +-.-|++|..+|......   .+..+   .+..|+    .+.+.+.+.+.+.. .+.+|++
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i  140 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINI  140 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEE
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-ccccccc
Confidence            457899999998754321   23332   344454    44555555554443 4555555

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0039  Score=58.15  Aligned_cols=114  Identities=18%  Similarity=0.086  Sum_probs=69.8

Q ss_pred             EEE-EEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcc--cCCCeEEEEeCC----CChhhhhCCC--
Q 016424           43 KVA-ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTGAVVRGFLGQ----PQLENALTGM--  110 (390)
Q Consensus        43 KI~-VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~--~~~~~v~~~~~t----~dl~~al~dA--  110 (390)
                      ||+ |+||+|.||+.++..|...+.  +|+.+|....   ......+.+.  ....+++.+.+.    .++.+.+++.  
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCC
Confidence            555 889999999999999988886  8999997531   1111111111  112455554321    2334555655  


Q ss_pred             cEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424          111 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       111 DiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      |+|+-+++.+..+  ..+....+..|+.-...+.+++.+++  +...+|.+|
T Consensus        80 d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S  131 (357)
T d1db3a_          80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (357)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            9999998865432  24455667889988999999888876  334566544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.53  E-value=0.003  Score=50.67  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC--CChhhh-hCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENA-LTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t--~dl~~a-l~dADiVIi~ag  118 (390)
                      +|++|+|+ |.+|+.++..|...+.  +++++|.|+  ..+.++.+..  ..+-.-.++  .-++++ +.+||.||++.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~--~~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINE--EKVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCH--HHHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcH--HHHHHHHHhC--CcceeeecccchhhhccCCccccEEEEEcC
Confidence            37899999 9999999999998887  899999986  2223343322  122111111  123333 789999888753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0011  Score=50.49  Aligned_cols=74  Identities=19%  Similarity=0.264  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +.+||.|+|. |..|.+++..|..++.  ++.++|.+.......++.+   ...+..  +..+ .+.+.+.|+||++.|+
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGI   74 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCC
Confidence            4568999999 9999999999988886  8899998652111112221   123322  2222 4678899999999998


Q ss_pred             CCC
Q 016424          120 PRK  122 (390)
Q Consensus       120 p~k  122 (390)
                      |..
T Consensus        75 ~~~   77 (93)
T d2jfga1          75 ALA   77 (93)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            853

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.48  E-value=0.021  Score=50.79  Aligned_cols=114  Identities=17%  Similarity=0.133  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  .|++.|+++  ++..+.++..   ..++..+.. -+|.          .+.+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34666779999999999999999987  899999986  3444444532   224444332 1221          2334


Q ss_pred             CCCcEEEEcCCCCC-CC--CCCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPR-KP--GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~-k~--g~~r~~---l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      -.-|++|..+|... ++  .++..+   .+..|    ....+...+.+.+....+.||+++-
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS  142 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSS  142 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeec
Confidence            56899999988643 22  233333   34444    4456666677766666677777763

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.45  E-value=0.0018  Score=54.48  Aligned_cols=104  Identities=18%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      -+..||.|||+ |.+|..++..|...+ +.++.++....  +...+..+.     .....   -+++.+++.++|+||.+
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g-~~~i~v~nRt~~ka~~l~~~~~-----~~~~~---~~~~~~~l~~~Divi~a   91 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRG-VRAVLVANRTYERAVELARDLG-----GEAVR---FDELVDHLARSDVVVSA   91 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHHHHT-----CEECC---GGGHHHHHHTCSEEEEC
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcC-CcEEEEEcCcHHHHHHHHHhhh-----ccccc---chhHHHHhccCCEEEEe
Confidence            45679999999 999999998888766 46899999875  233333332     22222   24788999999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCccc
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNST  164 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~tNPvd~~  164 (390)
                      .+.|.. -.++.           .+-..+..-.  ..-+++=++.|-|+=
T Consensus        92 tss~~~-ii~~~-----------~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          92 TAAPHP-VIHVD-----------DVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             CSSSSC-CBCHH-----------HHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             cCCCCc-cccHh-----------hhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            776532 11211           1112333322  234677779997765

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.44  E-value=0.001  Score=55.22  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC---CChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t---~dl~~al~dADiVIi~a  117 (390)
                      +||.|||| |.+|.+++..|..++.  +|+++|++..  .+.++..... .......+.   ..+.+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQ-HSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCT-TEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhccc-ccccccccccchhhhHhhhhccceeEeec
Confidence            59999999 9999999999999987  8999999862  3334443221 111111111   23456688999888764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.43  E-value=0.026  Score=50.51  Aligned_cols=115  Identities=18%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  .|++.|++.  +.....++.......++..+.. -+|.          .+.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            34677779999999999999999997  899999987  3444445544332334444332 1232          1224


Q ss_pred             CCCcEEEEcCCCCC--CC--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPR--KP--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~--k~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|...  .+  .++..+   .+..|+    ...+.+.+.+.+.. .+.||+++
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~is  142 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTA  142 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccc
Confidence            57899999998532  22  233332   344453    44445555555544 55566664

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.40  E-value=0.0015  Score=56.19  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CCh-hhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQL-ENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~dl-~~al~dADiVIi~ag  118 (390)
                      ++||.|+||+|.+|+.++..|...+...+++..-.+...          ...++...... .+. .....+.|.|+..+|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------hcccccccccchhhhhhccccchheeeeeee
Confidence            469999999999999999998888865566655443311          01122211100 011 222345799999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~i  154 (390)
                      ...........+...|......+++...+....-++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          72 TTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeccccccccccccchhhhhhhcccccccccccccc
Confidence            664433445566777888888888887776545443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.37  E-value=0.0072  Score=54.69  Aligned_cols=115  Identities=15%  Similarity=0.003  Sum_probs=72.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CChh---hhhC--CCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQLE---NALT--GMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~dl~---~al~--dADiVIi  115 (390)
                      +||.|+||+|.||+.++..|..++.  +|+.+|..........+.+.....+++.+.+. .|..   +.+.  ..++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            4899999999999999998888886  88888876511111223333323456655432 2221   1111  3556666


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .++.....  .......+..|+.-...+...+.++.+...++..|
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~S  123 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  123 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCccccccc
Confidence            65443221  13345667889988999999999998877766654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.36  E-value=0.014  Score=52.36  Aligned_cols=113  Identities=18%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CCh----------hhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQL----------ENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~al  107 (390)
                      +.+.|.||++++|..++..|+..+.  +|++.|.+.   ++..+.++....  .++..+... +|.          .+.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4667779999999999999999987  899999875   344455555432  344433221 221          1223


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~~---l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..-|++|..+|......   .+..+   .+..|    ....+.+.+.+.+....+.|++++
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~is  144 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMS  144 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccc
Confidence            46799999998754221   33333   34445    455667777777766667677665

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.0061  Score=56.29  Aligned_cols=113  Identities=19%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC--CCcEEE
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMDLVI  114 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~--dADiVI  114 (390)
                      .|.|+||+|.||+.++..|..++.  +++.+|...  ............ ...++.+.+. +   +++++++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            577999999999999999988886  899998643  111111111111 1233333221 2   2333444  789999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -+|+.+..+  .+........|......+.+...+.....++..-|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            998765322  23445667789999999999999887666554444

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.035  Score=49.31  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~a  106 (390)
                      +.+.+.|.||++++|..++..|+..+.  .|++.|++.  +...+.++.......++..+.. -+|.+          +.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            345677779999999999999999986  899999987  3445556654322234444332 12321          23


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHhC--CCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKCC--PNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~----~ii~~ia~~I~~~~--p~a~iiv~t  158 (390)
                      +-.-|++|..+|.....  +..+.+..|.    ...+...+.+.+..  ..+.|++++
T Consensus        80 ~G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~is  135 (254)
T d2gdza1          80 FGRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS  135 (254)
T ss_dssp             HSCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             cCCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeec
Confidence            34789999999876432  3334444443    45555666665543  346777775

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0052  Score=54.32  Aligned_cols=112  Identities=18%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +.+++.|.||++++|..++..|+..+.  +|++.|+++.  ...+..+....++++-  .-+...+.+..-|++|..+|.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~l~~~~~~~~~~Dv~~--~~~~~~~~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGHRYVVCDLRK--DLDLLFEKVKEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCSEEEECCTTT--CHHHHHHHSCCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--HHHhcCCcEEEcchHH--HHHHHHHHhCCCcEEEecccc
Confidence            457899999999999999999999997  8999999861  1111111100011110  001245667889999999997


Q ss_pred             CCCCC---CCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRKPG---MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k~g---~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +....   .+..+   .+..|.    .+.+.+.+.+.+.. .+.+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~  124 (234)
T d1o5ia_          77 PKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT  124 (234)
T ss_dssp             CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccc
Confidence            65322   23332   244444    34556666665544 45555554

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.00095  Score=57.02  Aligned_cols=111  Identities=16%  Similarity=0.043  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~ag  118 (390)
                      .+++|.|+||+|.+|+.++..|+..+.--.++..+.+..  ...++....  ..+..- ....++.++++++|.||..++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~--~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--GKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH--HHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH--HHHhccCCc--EEEEeeeccccccccccccceeeEEEEe
Confidence            467999999999999999999988875224444444431  122222211  111110 011345678999999999876


Q ss_pred             CCCCC---------C------CCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 016424          119 VPRKP---------G------MTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (390)
Q Consensus       119 ~p~k~---------g------~~r~~l~~~N~~ii~~ia~~I~~~~p~a~i  154 (390)
                      ....+         .      .........|..-.+.++......+..-..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T d2q46a1          78 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIV  128 (252)
T ss_dssp             CCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEE
T ss_pred             eccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccc
Confidence            43210         0      111223445556666666666666644433

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.0059  Score=56.62  Aligned_cols=60  Identities=12%  Similarity=0.051  Sum_probs=46.5

Q ss_pred             HHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHH-HHH
Q 016424          272 AVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESG-LFC  334 (390)
Q Consensus       272 ~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~-~L~  334 (390)
                      ++++++||.+|.+.   ++.++ .++|.+   |+|.+++|||+|+++|+.++.--++|++.-++ +++
T Consensus       184 a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~  248 (308)
T d1obba2         184 HIPFIDALLNDNKA---RFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLR  248 (308)
T ss_dssp             HHHHHHHHHHCCCE---EEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHH
T ss_pred             HHHHHHHHHcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHHHHHH
Confidence            78999999999763   44454 567775   78999999999999999997521578886644 444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.22  E-value=0.036  Score=49.46  Aligned_cols=113  Identities=16%  Similarity=0.259  Sum_probs=71.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  .|++.|+++  +...+.++....  .++..+... +|.          .+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45777889999999999999999987  899999987  445556665432  344443321 221          2334


Q ss_pred             CCCcEEEEcCCCCCC--C--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK--P--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k--~--g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|....  +  .++..   ..+..|+.    ..+...+.+.+. ..+.||+++
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~is  141 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTA  141 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeee
Confidence            579999999886432  2  13333   23444543    445555555543 466777765

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.13  E-value=0.019  Score=53.45  Aligned_cols=114  Identities=13%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCC----------c-hHHHHHHHhccc------CCCeEEEEeCC-C
Q 016424           41 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVV----------N-TPGVTADISHMD------TGAVVRGFLGQ-P  101 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~----------~-~~g~a~DL~~~~------~~~~v~~~~~t-~  101 (390)
                      -|||.|+||+|.||+.++..|. ..+.  +|+.+|.-          + .......+.+..      ....+..+.+. +
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            3799999999999999998665 4666  89999841          1 122333333221      12344444332 2


Q ss_pred             C---hhhhh---CCCcEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 016424          102 Q---LENAL---TGMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (390)
Q Consensus       102 d---l~~al---~dADiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv  156 (390)
                      |   +.+++   +++|+|+-+|+....+.  .........|......+.....+..+...+..
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~  142 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFS  142 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccc
Confidence            2   23333   57899999987543222  12344567899999999999998887665543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.12  E-value=0.011  Score=55.65  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ...++|||+ |..+..-+..+...-.+.+|.+||++.  ....+.++.... ...+..   .+++++|+++||+|+.+.
T Consensus       128 a~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         128 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYS-GLTIRR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCT-TCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             CceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhcc-CCCcee---cCCHHHHHhcCCceeecc
Confidence            458999999 988887776655433478999999987  455666775432 345554   357899999999999754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.11  E-value=0.009  Score=54.77  Aligned_cols=114  Identities=17%  Similarity=0.160  Sum_probs=72.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC--CCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT--GMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~--dAD  111 (390)
                      +++||.|+||+|.||+.++..|...+.  +|..+|.+.  ........ ..  ...++...+. +|   +.++++  ..|
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~-~~--~~~i~~~~~Dl~d~~~l~~~~~~~~~~   81 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETA-RV--ADGMQSEIGDIRDQNKLLESIREFQPE   81 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHT-TT--TTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhh-hc--ccCCeEEEeeccChHhhhhhhhhchhh
Confidence            457999999999999999999999887  899999876  22222211 11  1233333321 22   234444  347


Q ss_pred             EEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       112 iVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +|+..++.+-...  ..-......|+.....+...+.+......++..|
T Consensus        82 ~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          82 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            8887776542111  1223456778888999999999888666555443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.09  E-value=0.047  Score=48.54  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|+++  +...+.++.... ..++..+... +|.          .+.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45677779999999999999999987  899999987  344445554322 2233333221 222          1234


Q ss_pred             CCCcEEEEcCCCCC-CC--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPR-KP--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~-k~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|... ++  ..+..+   .+..|+    ...+.+.+.+.+....+.+++.+
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~  146 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTS  146 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEee
Confidence            57899999988643 22  123332   344453    45566777777777777776654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.046  Score=48.48  Aligned_cols=118  Identities=22%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~al  107 (390)
                      .+-+.|.||++++|..++..|++.+.  .|++.|+++  +...+.++...  ..++..+.+ -+|.+          +.+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            44677779999999999999999997  899999987  45566666542  234444332 13321          245


Q ss_pred             CCCcEEEEcCCCCCCCC--CCHH----HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424          108 TGMDLVIIPAGVPRKPG--MTRD----DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g--~~r~----~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tNPvd~  163 (390)
                      -.-|++|..+|......  ....    +.+..|    ....+.+.+.+.+. ..+.|++++-....
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGH  147 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-C
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhc
Confidence            57999999998754332  1221    233333    45566666666654 46777777655443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.08  E-value=0.0089  Score=51.70  Aligned_cols=96  Identities=20%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-+.++|.|||. |.||+.++..+...+.  ++..||.........+.       .+..   ..++++.++.||+|++..
T Consensus        46 eL~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~-------~~~~---~~~l~~ll~~sD~i~~~~  112 (193)
T d1mx3a1          46 RIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERAL-------GLQR---VSTLQDLLFHSDCVTLHC  112 (193)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHH-------TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             eeeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhh-------cccc---ccchhhccccCCEEEEee
Confidence            345679999999 9999999999987776  99999986522221111       1121   247889999999999975


Q ss_pred             C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          118 G-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       118 g-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      . .+.-.++-..              +.+....|++++||++=-
T Consensus       113 plt~~T~~li~~--------------~~l~~mk~~a~lIN~sRG  142 (193)
T d1mx3a1         113 GLNEHNHHLIND--------------FTVKQMRQGAFLVNTARG  142 (193)
T ss_dssp             CCCTTCTTSBSH--------------HHHTTSCTTEEEEECSCT
T ss_pred             cccccchhhhhH--------------HHHhccCCCCeEEecCCc
Confidence            3 2332333111              224445689999999743

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.02  E-value=0.0047  Score=55.06  Aligned_cols=77  Identities=16%  Similarity=0.060  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  112 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADi  112 (390)
                      +.+||.|+||+|.+|+.++..|...+.  +++.++.+.  . ......+.... ...++...+    ..++.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            567999999999999999998888885  788888765  1 11222222211 122333322    1245678999999


Q ss_pred             EEEcCCC
Q 016424          113 VIIPAGV  119 (390)
Q Consensus       113 VIi~ag~  119 (390)
                      ++..++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9987653

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.057  Score=48.05  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  .|++.|+++  +...+.++....  .++..+.. -+|.          .+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35777779999999999999999987  899999987  344555665432  23333332 1232          2334


Q ss_pred             CCCcEEEEcCCCCCC-C-CCCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK-P-GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~-g~~r~~---l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|.... + .++..+   .+..|    ....+.+.+.+.+.. .+.||+++
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~is  145 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTIT  145 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-cccccccc
Confidence            689999999886442 2 234333   24444    345556666666655 45555554

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.96  E-value=0.0031  Score=59.18  Aligned_cols=106  Identities=17%  Similarity=0.082  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CCh---hhhhC--CCcEEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT--GMDLVII  115 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al~--dADiVIi  115 (390)
                      |||.|+||+|.+|+.++..|+..+. ..++++|.....+....+.+......++.+.+. +|.   .+.++  +.|+||-
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            7999999999999999998887764 246778865422222234444334566665432 232   23333  5799999


Q ss_pred             cCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHh
Q 016424          116 PAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKC  148 (390)
Q Consensus       116 ~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~  148 (390)
                      +|+.+..+.  ..-.+.+..|+.....+...+.++
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~  114 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKY  114 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            887543111  122345677777777777666655

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.95  E-value=0.047  Score=49.01  Aligned_cols=115  Identities=17%  Similarity=0.259  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCC-CCh----------hhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQL----------ENA  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t-~dl----------~~a  106 (390)
                      .+.+.|.||+++||..++..|+..+.  .|++.|+++  ++..+.++..... ..++..+.+. +|.          .+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            35677889999999999999999987  899999987  4556666665432 1345444321 221          112


Q ss_pred             hCCCcEEEEcCCCCCCCC-----CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRKPG-----MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g-----~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +-.-|++|..+|.....+     ++..   ..+..|+.    ..+...+.+.+ ...+.+++.+
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            346799999988643222     2332   23444543    44455555543 4566666654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.93  E-value=0.015  Score=49.78  Aligned_cols=95  Identities=17%  Similarity=0.172  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      -..++|.|||. |.||..++..+...+.  ++..||... ......+..       +..   ..++++.+++||+|++..
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~~  108 (188)
T d2naca1          42 LEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNC  108 (188)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECS
T ss_pred             ccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhcc
Confidence            45679999999 9999999998887666  899999865 222222221       121   246889999999999975


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          118 GV-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       118 g~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      .. +.-.++-.              .+.+....|++++||++--
T Consensus       109 plt~~T~~li~--------------~~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1         109 PLHPETEHMIN--------------DETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             CCCTTTTTCBS--------------HHHHTTSCTTEEEEECSCG
T ss_pred             cccccchhhhH--------------HHHHHhCCCCCEEEecCch
Confidence            32 22223211              1233445688999999744

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.90  E-value=0.013  Score=50.43  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=53.1

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhccc--C--C--CeEEE---Ee--------
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMD--T--G--AVVRG---FL--------   98 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~--~--~--~~v~~---~~--------   98 (390)
                      ...++-||.|||| |-+|...+...+.-+-  .+..+|++. ......++....  .  .  .....   +.        
T Consensus        25 g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~  101 (183)
T d1l7da1          25 GTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFR  101 (183)
T ss_dssp             EEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC-----------------------
T ss_pred             CCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHH
Confidence            3567889999999 9999988877776664  899999987 444545443210  0  0  00000   00        


Q ss_pred             --CCCChhhhhCCCcEEEEcCCCCCC
Q 016424           99 --GQPQLENALTGMDLVIIPAGVPRK  122 (390)
Q Consensus        99 --~t~dl~~al~dADiVIi~ag~p~k  122 (390)
                        -...+.+.+++||+||.++-+|-+
T Consensus       102 ~~~~~~l~~~l~~aDlVI~talipG~  127 (183)
T d1l7da1         102 KKQAEAVLKELVKTDIAITTALIPGK  127 (183)
T ss_dssp             CCHHHHHHHHHTTCSEEEECCCCTTS
T ss_pred             HHHHHHHHHHHHhhhhheeeeecCCc
Confidence              001244669999999999877644

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.84  E-value=0.0051  Score=52.65  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=44.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH-HHHHh-cccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADIS-HMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~-a~DL~-~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |+||+|+||||.+|+-+..+|...|.+.-..|.- +...|. ..++. +......+.    ..+.++..+++|+|+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s-~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS-RTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC-STTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec-cccCCCcccccCchhhcccccc----ccCHhHhccccceEEEcc
Confidence            6899999999999999999999888654334432 222221 12222 211112222    234455567899999875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.83  E-value=0.039  Score=49.49  Aligned_cols=115  Identities=16%  Similarity=0.194  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCC-CCh----------hhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQL----------ENA  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t-~dl----------~~a  106 (390)
                      .+.+.|+||++++|..++..|+..+.  +|++.|+++  +...+.++..... ..++..+... +|.          .+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34677779999999999999999987  899999987  4556666765432 2345544321 221          123


Q ss_pred             hCCCcEEEEcCCCCCCC--C-----CCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRKP--G-----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~--g-----~~r---~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +-.-|++|..+|.....  .     ++.   ...+..|+.    ..+...+.+.+. +.++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            34689999999875421  1     222   123444543    445555555443 456555554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.82  E-value=0.088  Score=47.22  Aligned_cols=116  Identities=15%  Similarity=0.089  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      .+.+.|.||+|++|..++..|+..+.  +|++.|++.  +...+.++.... ..++..+.. -+|.          .+.+
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhc
Confidence            35677889999999999999999986  899999987  344555665432 123333321 1222          2224


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..-|++|..+|......   .+..   ..+..|.    ......+...........+++.+.
T Consensus       102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss  163 (294)
T d1w6ua_         102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  163 (294)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccccccccccccc
Confidence            57899999988644322   2222   2233332    223444455554555666665553

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.79  E-value=0.06  Score=47.73  Aligned_cols=111  Identities=19%  Similarity=0.270  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhhCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALTG  109 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al~d  109 (390)
                      .+.|.||++++|..++..|+..+.  +|+++|+++  +...+.++....  .++..+.. -+|.          .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            444559999999999999998886  899999987  455666676532  34444332 1231          123458


Q ss_pred             CcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -|++|..+|......   .+..   ..+..|+    ...+...+.+.+.. .+.||+++
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnis  145 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINIS  145 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEEC
Confidence            999999988644322   2222   2344443    44555666666554 56677775

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.04  Score=45.63  Aligned_cols=100  Identities=18%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhh--------C
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL--------T  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al--------~  108 (390)
                      .++..+|.|+|+ |.+|...+..+...+ ...++..|.++ ....+.++.     ........+.+..+..        .
T Consensus        24 ~~~gd~VlI~G~-G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          24 VTLGHKVLVCGA-GPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIG-----ADLVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT-----CSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECC-CccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhC-----CcccccccccccccccccccccCCC
Confidence            345569999999 999999998888776 45899999987 334444442     2222222233433322        3


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                      ++|+||-+.|.+.                  .+-..+.-..|.+.+++++.|.+
T Consensus        97 g~Dvvid~~G~~~------------------~~~~a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          97 KPEVTIECTGAEA------------------SIQAGIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             CCSEEEECSCCHH------------------HHHHHHHHSCTTCEEEECSCCCS
T ss_pred             CceEEEeccCCch------------------hHHHHHHHhcCCCEEEEEecCCC
Confidence            7899999987541                  12223333458899888876654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.72  E-value=0.013  Score=45.82  Aligned_cols=71  Identities=18%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      +.+||.|||+ |.+|..-+..|...+.  ++.+++........ .+.+.   ..++.....-+ .+.+.++++|+.+.+
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~-~~~~~---~~i~~~~~~~~-~~dl~~~~lv~~at~   81 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQFT-VWANE---GMLTLVEGPFD-ETLLDSCWLAIAATD   81 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHHH-HHHTT---TSCEEEESSCC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHHH-HHHhc---CCceeeccCCC-HHHhCCCcEEeecCC
Confidence            4569999999 9999999999998886  88999986533222 23222   23333332222 467999999998863

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.72  E-value=0.0086  Score=50.80  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=44.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC--CchHHH-HHHH-hccc--CCCeEEEEeCCCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGV-TADI-SHMD--TGAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di--~~~~g~-a~DL-~~~~--~~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      |+||+|+||+|.+|+-+..+|...|.+.-..|.=.  ....|. ..+. .+..  ....+...   .+......++|+|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvvf   77 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVVF   77 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccc---hhhhhhhcccceee
Confidence            68999999999999999999999985432233321  111121 1111 1111  12233332   24445578999999


Q ss_pred             EcC
Q 016424          115 IPA  117 (390)
Q Consensus       115 i~a  117 (390)
                      .+.
T Consensus        78 ~al   80 (179)
T d2g17a1          78 LAT   80 (179)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            985

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.69  E-value=0.011  Score=52.64  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI  114 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVI  114 (390)
                      .+++.|.||++++|..++..|+..+.  +|++.|+++  ++..+.++.......++.-...    -....+.+..-|++|
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            45788889999999999999999987  899999987  2333333321100011110000    001123345789999


Q ss_pred             EcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~---g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..+|.....   ..+..   ..+..|+.-    .+.+.+.+.+. ..+.+++.+
T Consensus        83 nnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~s  135 (242)
T d1ulsa_          83 HYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTA  135 (242)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEEC
T ss_pred             ECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeec
Confidence            999875432   13332   234555444    44444444433 344455443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.69  E-value=0.0041  Score=53.29  Aligned_cols=76  Identities=17%  Similarity=0.294  Sum_probs=46.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH-HHHHh-cccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADIS-HMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~-a~DL~-~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      +.++.||+|+||+|.+|+-+..+|...|.+ ||..+--+...|. ..+.. +... .......  ....+.++++|+|+.
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~Dvvf~   77 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLIT-QDLPNLV--AVKDADFSNVDAVFC   77 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTT-SCCCCCB--CGGGCCGGGCSEEEE
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccc-cccccch--hhhhhhhcccceeee
Confidence            456789999999999999999999998855 5555544332221 12221 1111 1111111  112355789999998


Q ss_pred             cC
Q 016424          116 PA  117 (390)
Q Consensus       116 ~a  117 (390)
                      +.
T Consensus        78 al   79 (183)
T d2cvoa1          78 CL   79 (183)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.089  Score=46.64  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC----------hhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|+++  ++..+.++.+.      ..+.. -+|          ..+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~------~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGA------VFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTE------EEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCC------eEEEccCCCHHHHHHHHHHHHHhc
Confidence            45788889999999999999999987  899999987  33344444332      11111 111          22344


Q ss_pred             CCCcEEEEcCCCCCCCC----CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG----MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g----~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|....++    .+..   ..+..|    ..+.+...+.+.+.  .+.||+++
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~is  137 (250)
T d1ydea1          78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINIS  137 (250)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEC
T ss_pred             CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccc
Confidence            57899999998543222    2332   224444    45566666666654  36677765

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.67  E-value=0.15  Score=44.87  Aligned_cols=113  Identities=20%  Similarity=0.294  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CCh----------hhhhCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQL----------ENALTG  109 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~al~d  109 (390)
                      .+.+.|.||++++|..++..|+..+.  .|++.|+++.......+....  .++..+... +|.          .+.+-.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            34667779999999999999999997  899999987322222233222  233333221 222          122457


Q ss_pred             CcEEEEcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRK-P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k-~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -|++|..+|.... +  ..+..   ..+..|+    ...+.+.+.+.+.. .+.||+++
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~is  138 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLT  138 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccc
Confidence            8999999986432 2  12332   2344453    45555666666554 56677775

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.64  E-value=0.0031  Score=52.15  Aligned_cols=71  Identities=21%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ++|||+|+||+|.+|+-+...|.+.+ ...+|.++--....|..  +..  ....+....  .+ .+.+.++|+++.+.
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~--i~~--~~~~~~~~~--~~-~~~~~~~d~vf~a~   72 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR--MGF--AESSLRVGD--VD-SFDFSSVGLAFFAA   72 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE--EEE--TTEEEECEE--GG-GCCGGGCSEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc--eee--ccccchhcc--ch-hhhhccceEEEecC
Confidence            36899999999999999999887543 45678887665422211  111  123344322  12 35688999999886

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.0091  Score=53.28  Aligned_cols=111  Identities=16%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC----------hhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|+++  ++..+.++...     ...+.. -+|          ..+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCc-----ceEEEeecCCHHHHHHHHHHHHHHh
Confidence            34667779999999999999999987  899999987  44555555432     111111 112          12334


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      ..-|++|..+|.... +  .++..   ..+..|+    .+.+...+.+.+. +.+.||+++-
T Consensus        79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS  139 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISS  139 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccc
Confidence            578999999986432 2  22332   2344443    3444555555554 4567777753

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.60  E-value=0.018  Score=49.57  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|.|||. |.||+.++..+...+.  ++..||............      ....   ..++.+.++.||+|++...
T Consensus        45 l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~------~~~~---~~~l~~ll~~sD~v~l~~p  112 (191)
T d1gdha1          45 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASY------QATF---HDSLDSLLSVSQFFSLNAP  112 (191)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHH------TCEE---CSSHHHHHHHCSEEEECCC
T ss_pred             ecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcc------cccc---cCCHHHHHhhCCeEEecCC
Confidence            34679999999 9999999998887776  899999865211111111      1111   2468899999999999752


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          119 -VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       119 -~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                       .|.-.++--              .+.+....|++++||++=-
T Consensus       113 lt~~T~~li~--------------~~~l~~mk~~a~lIN~sRG  141 (191)
T d1gdha1         113 STPETRYFFN--------------KATIKSLPQGAIVVNTARG  141 (191)
T ss_dssp             CCTTTTTCBS--------------HHHHTTSCTTEEEEECSCG
T ss_pred             CCchHhheec--------------HHHhhCcCCccEEEecCCc
Confidence             333333311              1233345689999999743

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.054  Score=48.31  Aligned_cols=113  Identities=16%  Similarity=0.192  Sum_probs=66.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~al  107 (390)
                      .+++.|.||++++|..++..|+..+.  +|++.|+++  +...+.++.... ...+..+... ++          ..+.+
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            45788889999999999999999986  899999987  344444544332 2333333221 11          12234


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...|+++..+|.... +  ..+..   ..+..|.    ...+.+.+.+.+.  ++.+++++
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~is  149 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVS  149 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEec
Confidence            468899988775322 1  12322   2344443    4455555555433  46666664

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.54  E-value=0.011  Score=52.08  Aligned_cols=77  Identities=19%  Similarity=0.169  Sum_probs=50.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch----HHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDL  112 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~----~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADi  112 (390)
                      .+||.|+||+|.+|+.++..|...+.  ++..++.+..    ......+.+.. ...+....+.    .+..++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhhhcee
Confidence            35999999999999999999988886  8899998651    11222222211 1222322211    234577899999


Q ss_pred             EEEcCCCC
Q 016424          113 VIIPAGVP  120 (390)
Q Consensus       113 VIi~ag~p  120 (390)
                      |+..++..
T Consensus        80 vi~~~~~~   87 (307)
T d1qyca_          80 VISTVGSL   87 (307)
T ss_dssp             EEECCCGG
T ss_pred             eeeccccc
Confidence            99887543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.52  E-value=0.011  Score=50.56  Aligned_cols=89  Identities=22%  Similarity=0.239  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..++|.|||. |.||..++..+...+.  ++.-||.....        .    ..+.   ..++++.+++||+|++..  
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~--------~----~~~~---~~~l~ell~~sDiv~~~~--  100 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKE--------G----PWRF---TNSLEEALREARAAVCAL--  100 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCC--------S----SSCC---BSCSHHHHTTCSEEEECC--
T ss_pred             cCceEEEecc-ccccccceeeeecccc--ccccccccccc--------c----ceee---eechhhhhhccchhhccc--
Confidence            4579999999 9999999999887776  89999986421        0    1111   136789999999999964  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |..+. ++ .++  |       .+.+....|++++|+++=
T Consensus       101 pl~~~-t~-~li--~-------~~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         101 PLNKH-TR-GLV--K-------YQHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             CCSTT-TT-TCB--C-------HHHHTTSCTTCEEEECSC
T ss_pred             ccccc-cc-ccc--c-------cceeeeccccceEEeccc
Confidence            33221 11 011  1       134445568999999873

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.51  E-value=0.0065  Score=54.46  Aligned_cols=114  Identities=12%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeC----CCChhhhhCCCcEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLG----QPQLENALTGMDLV  113 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~----t~dl~~al~dADiV  113 (390)
                      +.+.|.||++++|..++..|+..+.  +|++.|+++  ++..+.++.....  ..++.-...    -....+.+-.-|++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            4666679999999999999999987  899999987  3445555543110  111110000    01122344578999


Q ss_pred             EEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          114 IIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       114 Ii~ag~p~k~---g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |..+|.....   ..+..   ..+..|+    ...+...+.+.+  ..+.||+++-
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS  138 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMAS  138 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECC
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccc
Confidence            9999865421   12332   2344453    445566666643  3477777763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.011  Score=50.06  Aligned_cols=77  Identities=17%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h----HHHHHHHhcccCCCeEEEEeCC--CChhhhhCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T----PGVTADISHMDTGAVVRGFLGQ--PQLENALTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~----~g~a~DL~~~~~~~~v~~~~~t--~dl~~al~dAD  111 (390)
                      .+..+|.|+|+ |+.|.++++.|...+ +.+|++++.+. .    ...+.++.... ...++...-.  .++.+.+.++|
T Consensus        16 l~~k~vlIlGa-GGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          16 IKGKTMVLLGA-GGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHHTCS
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhhcccc
Confidence            35579999999 999999999888876 57999999986 1    22233343322 2334433211  23456678999


Q ss_pred             EEEEcCC
Q 016424          112 LVIIPAG  118 (390)
Q Consensus       112 iVIi~ag  118 (390)
                      +||.+..
T Consensus        93 iiIN~Tp   99 (182)
T d1vi2a1          93 ILTNGTK   99 (182)
T ss_dssp             EEEECSS
T ss_pred             eeccccC
Confidence            9999853

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.042  Score=45.41  Aligned_cols=133  Identities=14%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCC-CChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ-PQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t-~dl~~al~dADiVIi  115 (390)
                      .++..+|.|+|+ |++|...+..++..+.  +.+..|.++ ....+.++.-     ....-..+ .+.....++.|+||.
T Consensus        28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGa-----d~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          28 AGPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGA-----DEVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTC-----SEEEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCC-----cEEEECchhhHHHHhcCCCceeee
Confidence            566789999998 9999999988888775  556788776 3334444431     11111111 112234468999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeeccc---ccHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM---LDVV  192 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~---Lds~  192 (390)
                      +.|.+.-                  +...+.-..|.+.+++++-|.+....+....+.    +...+++|+..   -|..
T Consensus       100 ~~g~~~~------------------~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~----~k~~~i~Gs~~~~~~d~~  157 (168)
T d1uufa2         100 TVAAPHN------------------LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLI----MKRRAIAGSMIGGIPETQ  157 (168)
T ss_dssp             CCSSCCC------------------HHHHHTTEEEEEEEEECCCC-------CHHHHH----TTTCEEEECCSCCHHHHH
T ss_pred             eeecchh------------------HHHHHHHHhcCCEEEEeccCCCCcccccHHHHH----HCCcEEEEEeecCHHHHH
Confidence            9876531                  223344556899999987665433211111111    22468888832   3444


Q ss_pred             HHHHHHHH
Q 016424          193 RANTFVAE  200 (390)
Q Consensus       193 R~~~~la~  200 (390)
                      ++-.++++
T Consensus       158 e~l~l~a~  165 (168)
T d1uufa2         158 EMLDFCAE  165 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44455544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.45  E-value=0.099  Score=46.52  Aligned_cols=113  Identities=18%  Similarity=0.233  Sum_probs=68.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---h-------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l-------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|+++  ++..+.++....   .+..+.. -+|   .       .+.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35677779999999999999999986  899999987  445555665422   2332221 122   1       1234


Q ss_pred             CCCcEEEEcCCCCC-CC----CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          108 TGMDLVIIPAGVPR-KP----GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       108 ~dADiVIi~ag~p~-k~----g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      -.-|++|..+|... .+    .++..   ..+..|+    -..+...+.+.+.. .+.+++++.
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss  143 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTAS  143 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECC
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccc
Confidence            57899999988632 22    22322   2344454    44455555555444 455666643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.39  E-value=0.053  Score=41.30  Aligned_cols=74  Identities=19%  Similarity=0.365  Sum_probs=53.9

Q ss_pred             CCCCCEEEEEcCCCCcH-HHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG-~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ..+.+||=+||- |++| +++|..|...+.  +|.-.|... .....+|.+.  ...+.  .+. + .+.++++|+||.+
T Consensus         5 ~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~-~~~~~~L~~~--Gi~v~--~g~-~-~~~i~~~d~vV~S   74 (96)
T d1p3da1           5 MRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIAD-GVVTQRLAQA--GAKIY--IGH-A-EEHIEGASVVVVS   74 (96)
T ss_dssp             CTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCC-SHHHHHHHHT--TCEEE--ESC-C-GGGGTTCSEEEEC
T ss_pred             chhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCC-ChhhhHHHHC--CCeEE--ECC-c-cccCCCCCEEEEC
Confidence            566789999999 9898 556888898888  999999875 2233445543  23443  332 3 4668999999999


Q ss_pred             CCCCC
Q 016424          117 AGVPR  121 (390)
Q Consensus       117 ag~p~  121 (390)
                      .++|.
T Consensus        75 ~AI~~   79 (96)
T d1p3da1          75 SAIKD   79 (96)
T ss_dssp             TTSCT
T ss_pred             CCcCC
Confidence            98885

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.37  E-value=0.14  Score=45.36  Aligned_cols=111  Identities=18%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~a  106 (390)
                      +.+.+.|.||++++|..++..|+..+.  +|++.|+++  +...+.++..     ++..+.. -+|.          .+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHH
Confidence            346889999999999999999999987  899999986  3334444432     2222221 1121          223


Q ss_pred             hCCCcEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~---g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +-.-|++|..+|.....   .++..   ..+..|+    -..+.+.+.+.+.. .+.||+++
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~is  137 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNIS  137 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccc
Confidence            45789999999864322   12322   3344454    44555555555544 56777775

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.36  E-value=0.028  Score=47.89  Aligned_cols=94  Identities=22%  Similarity=0.319  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ...++|.|+|. |.+|+.++..+...+.  ++..||.........+..       ++.    .++++.++.||+|++...
T Consensus        42 l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv~~~~P  107 (184)
T d1ygya1          42 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLP  107 (184)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCC
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEEEEcCC
Confidence            45679999999 9999999998876665  899999865333322221       221    257899999999999752


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          119 -VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       119 -~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                       .+.-.++-.              .+.+....|++++||++--
T Consensus       108 lt~~T~~lin--------------~~~l~~mk~~a~lIN~sRG  136 (184)
T d1ygya1         108 KTPETAGLID--------------KEALAKTKPGVIIVNAARG  136 (184)
T ss_dssp             CSTTTTTCBC--------------HHHHTTSCTTEEEEECSCT
T ss_pred             CCchhhhhhh--------------HHHHhhhCCCceEEEecch
Confidence             233333211              1233445689999999744

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.35  E-value=0.069  Score=47.38  Aligned_cols=113  Identities=14%  Similarity=0.136  Sum_probs=67.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---h-------hhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l-------~~al  107 (390)
                      +.+.|.||++++|..++..|+..+.  +|++.|+++   ++....++.... ..++..+.. -+|   .       .+.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4566779999999999999999987  899999975   233444443221 123333221 112   1       2223


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -.-|++|..+|......   .+..   ..+..|    ....+...+.+.+.. .+.||+++
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~is  141 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIA  141 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeecc
Confidence            56899999998754321   2322   234445    445566666666554 56677664

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.35  E-value=0.049  Score=48.32  Aligned_cols=112  Identities=17%  Similarity=0.204  Sum_probs=70.1

Q ss_pred             EEE-EEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh----------hhhhC
Q 016424           43 KVA-ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL----------ENALT  108 (390)
Q Consensus        43 KI~-VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~al~  108 (390)
                      ||+ |.||++++|..++..|+..+.  +|++.|.++  ++..+.++....  .++..+... +|.          .+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            664 559999999999999999997  899999987  455566665432  334433321 221          22345


Q ss_pred             CCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh-----CCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC-----CPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~-----~p~a~iiv~t  158 (390)
                      .-|++|..||......   .+..   +.+..|+.-...+++.+..+     ...+.|++++
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~  139 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIA  139 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEEC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccc
Confidence            6899999998754321   2332   34666766665566555432     2345566653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.32  E-value=0.14  Score=45.46  Aligned_cols=114  Identities=17%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh----------hhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL----------ENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~a  106 (390)
                      +.+.+.|.||++++|..++..|+..+.  .|++.|+++  +...+.++....  .++..+... +|.          .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            456788889999999999999999987  899999987  444555565432  234433321 221          122


Q ss_pred             hCC-CcEEEEcCCCCCC-C--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          107 LTG-MDLVIIPAGVPRK-P--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       107 l~d-ADiVIi~ag~p~k-~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      +.+ -|++|..+|.... +  ..+..+   .+..|+    ...+.+.+.+.+.. .+.|++++
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~is  144 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMS  144 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccc
Confidence            323 7999999886432 2  233332   344454    34455555555444 55666665

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=95.32  E-value=0.0034  Score=55.77  Aligned_cols=99  Identities=17%  Similarity=0.165  Sum_probs=62.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC--CcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d--ADiVIi~ag~  119 (390)
                      |||.|+||+|.||+.++..|...+   +++-.|..... ...|+.+            ..++++.+++  .|+||-+||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~------------~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCC------------HHHHHHHHHHcCCCEEEEeccc
Confidence            899999999999999998887766   45556665410 0011111            1123445553  4999999875


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          120 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       120 p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ...  ...........|......+.....+.+  .++++++
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence            421  123445566778888888888877664  3444443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.018  Score=51.17  Aligned_cols=109  Identities=15%  Similarity=0.242  Sum_probs=66.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC----------hhhhhC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENALT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~al~  108 (390)
                      +.+.|.||++++|..++..|+..+.  .|++.|+++  ++..+.++..     +...+.. -+|          ..+.+-
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGA-----NGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCC-----CCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            4566669999999999999999987  899999987  3445555532     1111111 112          122345


Q ss_pred             CCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .-|++|..+|......   .+..   ..+..|+    ...+.+.+.+.+.. .+.||+++
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~is  136 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIG  136 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeec
Confidence            7999999988654322   2322   2344454    45555555555543 57777775

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.29  E-value=0.061  Score=49.11  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC----hhhhhCCCcEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLVI  114 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d----l~~al~dADiVI  114 (390)
                      +.++|+|+||+|.+|+.++..|...+.  +++.+-.+........+...   ..++.+.+. .|    +.++++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            456999999999999999999988876  67777555422222233221   234444332 22    456889999988


Q ss_pred             EcC
Q 016424          115 IPA  117 (390)
Q Consensus       115 i~a  117 (390)
                      +..
T Consensus        77 ~~~   79 (350)
T d1xgka_          77 INT   79 (350)
T ss_dssp             ECC
T ss_pred             eec
Confidence            864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.29  E-value=0.0072  Score=51.09  Aligned_cols=76  Identities=17%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC---CeEEEEeCCCChhhhhCCCcE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~---~~v~~~~~t~dl~~al~dADi  112 (390)
                      ..+.++|.|+|+ |+++.++++.|...+   +|++++++.  +...+.++......   ..+..    .++...+.++|+
T Consensus        15 ~~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dl   86 (177)
T d1nvta1          15 RVKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDI   86 (177)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhh
Confidence            356779999999 999999998885433   899999986  45556666543211   23333    244566889999


Q ss_pred             EEEcCCCCC
Q 016424          113 VIIPAGVPR  121 (390)
Q Consensus       113 VIi~ag~p~  121 (390)
                      ||.+...+.
T Consensus        87 iIn~tp~g~   95 (177)
T d1nvta1          87 IINATPIGM   95 (177)
T ss_dssp             EEECSCTTC
T ss_pred             hccCCcccc
Confidence            999855443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.089  Score=46.46  Aligned_cols=116  Identities=20%  Similarity=0.142  Sum_probs=67.3

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHhC-CCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CChh---hhh-------
Q 016424           43 KVAIL-GAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQLE---NAL-------  107 (390)
Q Consensus        43 KI~VI-Ga~G~vG~~~a~~l~~~-~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl~---~al-------  107 (390)
                      ||+|| ||++++|..++..|+.. .-...|++.|+++  +...+.+|.......++..+... +|.+   +.+       
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~~~   86 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELP   86 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHhh
Confidence            77777 99999999999999852 1223899999987  45566667554333466655432 2321   111       


Q ss_pred             ----CCCcEEEEcCCCCC--CCC----CCHH---HHHHHHHHHHHHHHHHHHHhC-----CCcEEEEec
Q 016424          108 ----TGMDLVIIPAGVPR--KPG----MTRD---DLFNINAGIVRTLCEGIAKCC-----PNATVNLIS  158 (390)
Q Consensus       108 ----~dADiVIi~ag~p~--k~g----~~r~---~l~~~N~~ii~~ia~~I~~~~-----p~a~iiv~t  158 (390)
                          -+-|++|..+|...  ..+    .+..   ..+..|+.-...+++.+..+-     +.+.|++++
T Consensus        87 ~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~is  155 (259)
T d1oaaa_          87 RPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNIS  155 (259)
T ss_dssp             CCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEEC
T ss_pred             hhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccc
Confidence                13456777777532  111    2322   345666665555555555442     235666664

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=95.26  E-value=0.03  Score=50.77  Aligned_cols=49  Identities=10%  Similarity=-0.055  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEcc
Q 016424          270 YAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQ  321 (390)
Q Consensus       270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~  321 (390)
                      ..++++++||.+|.+.   ++.++ .++|.+   |+|.+++|||+|+++|+.++--
T Consensus       153 e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~v  205 (278)
T d1vjta2         153 EQHIPFINAIANNKRV---RLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKV  205 (278)
T ss_dssp             CSHHHHHHHHHHCCCE---EEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCC
T ss_pred             HHHHHHHHHHhCCCCe---EEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeec
Confidence            4567999999999763   44454 567876   7899999999999999999753

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0074  Score=53.76  Aligned_cols=111  Identities=15%  Similarity=0.194  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-------CChhhhhCCCcEEE
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-------PQLENALTGMDLVI  114 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-------~dl~~al~dADiVI  114 (390)
                      +.+.|.||++++|..++..|+..+.  +|++.|+++..  ..++.+..   .++.....       +...+.+..-|++|
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~id~lV   79 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVLF   79 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhcc---CCceeeeeccccccccccccccccceeEE
Confidence            4566779999999999999999987  99999998611  11222211   11111111       12233456889999


Q ss_pred             EcCCCCCCC---CCCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          115 IPAGVPRKP---GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       115 i~ag~p~k~---g~~r~~---l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      ..+|.+..-   .++..+   .+..|    ....+.+.+.+.+. +.+.|++++-.
T Consensus        80 n~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~  134 (245)
T d2ag5a1          80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSV  134 (245)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCS
T ss_pred             ecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeech
Confidence            999875432   123332   23333    34445555555544 45667777543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.24  E-value=0.11  Score=46.08  Aligned_cols=113  Identities=13%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh----------hhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL----------ENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl----------~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|+++  +...+.++....  .++..+... +|.          .+.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45778889999999999999999986  899999987  344555555432  233333221 221          1223


Q ss_pred             C-CCcEEEEcCCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          108 T-GMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~-dADiVIi~ag~p~k~g---~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      . .-|++|..+|......   ++..   ..+..|+.    +.+...+.+.+ ...+.||+++
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~G~Ii~is  144 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-SERGNVVFIS  144 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TSSEEEEEEC
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh-hccccccccc
Confidence            3 3799999998644322   3333   34555543    33444444443 4466676665

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0032  Score=53.74  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch----HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~----~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      .-+.++|+|||.|.-||.+++.+|.+.+.  .+.+.|++..    ......+.|... ..+..++ .+++++..+.||+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHHV-EDLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCEE-EEEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeecc-ccccccc-hhHHhhccccCCEE
Confidence            34567999999967789999999998875  7788887641    111122222221 2233221 23477888899999


Q ss_pred             EEcCCCCC
Q 016424          114 IIPAGVPR  121 (390)
Q Consensus       114 Ii~ag~p~  121 (390)
                      |...|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99998875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.21  E-value=0.018  Score=47.73  Aligned_cols=66  Identities=23%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             CCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhC-CCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-dADiVIi~  116 (390)
                      .+||+|||+ |++|+. ....+...+. .+++++|.+.  ....+.++..    .  ..   .+|+++.++ +.|+|+++
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~----~--~~---~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRV----S--AT---CTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTC----C--CC---CSSTTGGGGGCCSEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhccc----c--cc---cccHHHhcccccceeccc
Confidence            479999999 999976 4556655543 3788999886  2223332221    1  11   134555554 78999987


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      .
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.016  Score=49.51  Aligned_cols=79  Identities=20%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHH---H---------HHH----hcccCCCeEEEEeCC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV---T---------ADI----SHMDTGAVVRGFLGQ  100 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~---a---------~DL----~~~~~~~~v~~~~~t  100 (390)
                      ..+++||+|||| |-.|.+.|..|++.++  ++.|+|.+. .-|.   +         .++    .+......++++.++
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~  116 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNH  116 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESC
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCC
Confidence            455689999999 9999999999999998  999999875 1111   1         111    111001223333333


Q ss_pred             CChhhhhCCCcEEEEcCCC
Q 016424          101 PQLENALTGMDLVIIPAGV  119 (390)
Q Consensus       101 ~dl~~al~dADiVIi~ag~  119 (390)
                      +--.+...+.|.||++.|.
T Consensus       117 ~Vt~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         117 TVTADQLQAFDETILASGI  135 (179)
T ss_dssp             CCCSSSSCCSSEEEECCCE
T ss_pred             EEcccccccceeEEEeecC
Confidence            2113457899999998775

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.15  E-value=0.17  Score=44.89  Aligned_cols=115  Identities=19%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC----------hhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ----------LEN  105 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~  105 (390)
                      +.+++.|.||++++|..++..|+..+.  +|++.|.+.   ++..+.++....  .++..+.. .+|          ..+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHH
Confidence            345888889999999999999999987  899999875   233444444322  23333321 122          233


Q ss_pred             hhCCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          106 ALTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       106 al~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      .+-.-|++|..+|.....   ..+.   ...+..|+.-...+.+.+..+- ..+.+++++
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            455779999998865432   1222   2345566666666666666554 455555554

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.058  Score=44.35  Aligned_cols=65  Identities=12%  Similarity=0.219  Sum_probs=44.9

Q ss_pred             CEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      +||+|||+ |.+|.. ....+...+-+.-+.++|.+.  +...+.++.       +..   .+++++.+++.|+|+++.
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-------~~~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-------IPY---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-------CCB---CSSHHHHHTTCSEEEECS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-------ccc---cccchhhhhhcccccccc
Confidence            69999999 999986 566777666555567999987  233333321       112   246677789999999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.08  E-value=0.1  Score=46.35  Aligned_cols=113  Identities=15%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCC-CCh----------hhhhC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQL----------ENALT  108 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t-~dl----------~~al~  108 (390)
                      .+.|.||++++|..++..|+..+.  +|++.|+++  +...+.++..... ..++..+... +|.          .+.+-
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            445559999999999999999987  899999987  4556666765432 2345544321 221          12234


Q ss_pred             CCcEEEEcCCCCCC-----C--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          109 GMDLVIIPAGVPRK-----P--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k-----~--g~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .-|++|..+|....     +  .++..   ..+..|+    ...+.+.+.+.+. ..++|++.|
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            78999999886321     1  12322   2344454    3455556655443 355555544

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.07  E-value=0.0042  Score=50.87  Aligned_cols=62  Identities=10%  Similarity=0.065  Sum_probs=35.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      |.+||+ |.+|++++..|.....  ...+|+.+.  ..+.+|.+... ..  .    .+..++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~-~~--~----~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYG-GK--A----ATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTC-CC--C----CSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhccc-cc--c----cchhhhhccCcEEEEec
Confidence            689999 9999999987765443  234688764  23333443221 11  1    12357899999999986

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.06  E-value=0.19  Score=44.34  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCchHHHHHHHhcccCCCeEEEEeCC--CCh----------hhh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQ--PQL----------ENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~~~g~a~DL~~~~~~~~v~~~~~t--~dl----------~~a  106 (390)
                      +.+.|.|.||+++||..++..|+..+.  .+++. |.++....+.++........+..+...  .+.          .+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            356788999999999999999999885  45444 554422222333322222344433311  121          122


Q ss_pred             hCCCcEEEEcCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHh--CCCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKC--CPNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~----~ii~~ia~~I~~~--~p~a~iiv~t  158 (390)
                      +..-|++|..||....  .+-...+..|+    ...+.+.+.+.+.  .+.+.|++++
T Consensus        82 ~g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is  137 (254)
T d1sbya1          82 LKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC  137 (254)
T ss_dssp             HSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             cCCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence            4678999999986543  23334455554    4666677777554  3567777774

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.06  E-value=0.24  Score=43.79  Aligned_cols=114  Identities=13%  Similarity=0.095  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hh
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~a  106 (390)
                      +.+++.|+||++++|..++..|+..+.  +|++.|.++  +...+.++....  ..+..+.. -++.+          +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            567899999999999999999999997  899999987  344444554432  23333221 12221          22


Q ss_pred             h-CCCcEEEEcCCCCCCCC---CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          107 L-TGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       107 l-~dADiVIi~ag~p~k~g---~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      + ..-|++|..+|......   .+..   ..+..|    ....+.+.+.+.+. +.+.+++++
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~is  142 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLS  142 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-ccccccccc
Confidence            2 23788888888654321   2322   233334    34445555555554 455566665

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.032  Score=51.01  Aligned_cols=110  Identities=19%  Similarity=0.129  Sum_probs=67.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--------hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALTG  109 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--------~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~d  109 (390)
                      .||.|+||+|.||+.++..|...+.  +++.+|...        .......+.... ..+++.+.+. +|   +++++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            3899999999999999998888876  888888421        111111122221 2344444332 23   3455666


Q ss_pred             CcE--EEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 016424          110 MDL--VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (390)
Q Consensus       110 ADi--VIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~i  154 (390)
                      .|.  |+-.|+.+.-..  ....+....|+.-...+...+.+++..-++
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence            665  444566542111  134456788998888999998888765433

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.00  E-value=0.028  Score=48.62  Aligned_cols=92  Identities=23%  Similarity=0.301  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC-
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG-  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag-  118 (390)
                      +.++|+|||. |.||+.++..+...+.  ++..||.........   +.     ..    ..++.+.++.||+|++... 
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~~-----~~----~~~l~~~l~~sDii~~~~pl  106 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---KG-----YY----VDSLDDLYKQADVISLHVPD  106 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---TT-----CB----CSCHHHHHHHCSEEEECSCC
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---ce-----ee----eccccccccccccccccCCc
Confidence            4579999999 9999999999987776  899999865221111   11     11    2367899999999999752 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      .+...++-       |.       +.+....+++++||++=-
T Consensus       107 t~~T~~li-------~~-------~~l~~mk~~a~lIN~sRG  134 (197)
T d1j4aa1         107 VPANVHMI-------ND-------ESIAKMKQDVVIVNVSRG  134 (197)
T ss_dssp             CGGGTTCB-------SH-------HHHHHSCTTEEEEECSCG
T ss_pred             cccccccc-------cH-------HHHhhhCCccEEEecCch
Confidence            22212221       11       122345688999998743

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.16  Score=46.13  Aligned_cols=117  Identities=10%  Similarity=0.068  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc---CCCeEEEEeCC-CCh----------
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLGQ-PQL----------  103 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~---~~~~v~~~~~t-~dl----------  103 (390)
                      +.+.+.|.||++++|..++..|+..+.  .|++.|++.  +...+.+|....   ...++..+... +|.          
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            445788889999999999999999987  899999987  455666665321   12455544321 222          


Q ss_pred             hhhhCCCcEEEEcCCCCCCCC---CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424          104 ENALTGMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .+.+..-|++|..+|......   .+..   ..+..|+.    ..+.+.+.+.+.. .+.+++++.
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss  153 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIV  153 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECC
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-ccccccccc
Confidence            122457899999988644221   2222   33555543    4444555554444 444555543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.96  E-value=0.21  Score=43.74  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=69.5

Q ss_pred             EE-EEEcCCCCcHHHHHHHHHhCCC-----CcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------
Q 016424           43 KV-AILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------  103 (390)
Q Consensus        43 KI-~VIGa~G~vG~~~a~~l~~~~~-----~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------  103 (390)
                      +| .|.||++++|..++..|+..+.     ...++++|.+.  +...+.++....  .++..+.. -+|.          
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            65 4669999999999999988763     23589999987  455556665432  34443332 1221          


Q ss_pred             hhhhCCCcEEEEcCCCCCCCC---CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          104 ENALTGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       104 ~~al~dADiVIi~ag~p~k~g---~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .+.+-.-|++|..+|......   .+..   ..+..|    ....+.+.+.+.+. ..+.+++++.
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS  144 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITS  144 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEec
Confidence            233457899999998754321   2222   234445    35556666666654 3566777753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.066  Score=44.71  Aligned_cols=97  Identities=19%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhh---h------C
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENA---L------T  108 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~a---l------~  108 (390)
                      ++..+|.|+|| |.||...+..++..+. ..|+..|.++ ....+.++.     ....+-...++..+.   +      .
T Consensus        27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lG-----a~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAGKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIG-----ADLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTT-----CSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECC-Cccchhheeccccccc-cccccccccccccccccccc-----ceEEEeccccchHHHHHHHHHhhCCC
Confidence            44579999999 9999998888887773 5899999987 344555553     111111112232221   1      3


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      ++|+||-+.|.|.                  .+-..++-..|++.+++++.+
T Consensus       100 g~Dvvid~vG~~~------------------~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         100 GADFILEATGDSR------------------ALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             CEEEEEECSSCTT------------------HHHHHHHHEEEEEEEEECCCC
T ss_pred             CceEEeecCCchh------------------HHHHHHHHhcCCCEEEEEeec
Confidence            6899999987653                  122233444688988887543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.053  Score=45.12  Aligned_cols=138  Identities=16%  Similarity=0.180  Sum_probs=77.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi  115 (390)
                      ..+.++|.|+|| |+.+.++++.|...+.  +|.+++++.  ....+..+.+.   ..++...  .+ .....++|+||.
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~~--~~-~~~~~~~dliIN   85 (170)
T d1nyta1          15 IRPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQALS--MD-ELEGHEFDLIIN   85 (170)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEECC--SG-GGTTCCCSEEEE
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---ccccccc--cc-cccccccceeec
Confidence            345679999999 9999999999998875  799999876  23333333332   2444432  11 234578999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCcee-ecccccHHH
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTMLDVVR  193 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~Lds~R  193 (390)
                      +......+...-.               ......++.+++-+ -||..  |+++. ..++.+   ...++ |+.+| ..+
T Consensus        86 ~Tp~G~~~~~~~~---------------~~~~~~~~~~v~D~vY~P~~--T~ll~-~A~~~G---~~~~i~Gl~ML-i~Q  143 (170)
T d1nyta1          86 ATSSGISGDIPAI---------------PSSLIHPGIYCYDMFYQKGK--TPFLA-WCEQRG---SKRNADGLGML-VAQ  143 (170)
T ss_dssp             CCSCGGGTCCCCC---------------CGGGCCTTCEEEESCCCSSC--CHHHH-HHHHTT---CCEEECTHHHH-HHH
T ss_pred             ccccCcccCCCCC---------------cHHHhccCcEEEEeecCCCC--CHHHH-HHHHcC---CCcccCCHHHH-HHH
Confidence            7422111110000               01123466665433 47753  33332 223332   13467 88776 345


Q ss_pred             HHHHHHHHhCCCC
Q 016424          194 ANTFVAEVLGLDP  206 (390)
Q Consensus       194 ~~~~la~~l~v~p  206 (390)
                      +....--..|.+|
T Consensus       144 a~~~f~lwtG~~~  156 (170)
T d1nyta1         144 AAHAFLLWHGVLP  156 (170)
T ss_dssp             HHHHHHHHHSSCC
T ss_pred             HHHHHHHHhCCCC
Confidence            5555555566654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.90  E-value=0.11  Score=42.53  Aligned_cols=99  Identities=16%  Similarity=0.098  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEE-e-CCCChh---hhh----
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGF-L-GQPQLE---NAL----  107 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~-~-~t~dl~---~al----  107 (390)
                      .+...+|.|+|+ |.+|...+..++..+.  +++.+|.++ ....+.++..     ..... . ...+..   +.+    
T Consensus        24 ~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga-----~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          24 VQLGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA-----DVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC-----SEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC-----cEEEeccccccccchhhhhhhccc
Confidence            345679999998 9999999988888885  899999987 3445555431     11111 1 111211   111    


Q ss_pred             -CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424          108 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (390)
Q Consensus       108 -~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd  162 (390)
                       .++|+||-+.|.+.                  .+-..++-..|.+.+++++.|.+
T Consensus        96 g~g~D~vid~~g~~~------------------~~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          96 GDLPNVTIDCSGNEK------------------CITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             SSCCSEEEECSCCHH------------------HHHHHHHHSCTTCEEEECSCCSS
T ss_pred             ccCCceeeecCCChH------------------HHHHHHHHHhcCCceEEEecCCC
Confidence             46899999987541                  12233444469999999987654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.028  Score=54.27  Aligned_cols=74  Identities=15%  Similarity=0.226  Sum_probs=48.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t  100 (390)
                      .||.|||+ |++|+.++..|+..| +.+|.|+|-|.                     +...+..+.......++..+...
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~G-vg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  115 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSG-FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK  115 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTT-CCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcC-CCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence            39999999 999999999999988 46899999974                     01112223332223445544321


Q ss_pred             --CChhhhhCCCcEEEEcC
Q 016424          101 --PQLENALTGMDLVIIPA  117 (390)
Q Consensus       101 --~dl~~al~dADiVIi~a  117 (390)
                        +.-.+-+++.|+||.+.
T Consensus       116 i~~~~~~~~~~~DlVi~~~  134 (426)
T d1yovb1         116 IQDFNDTFYRQFHIIVCGL  134 (426)
T ss_dssp             GGGBCHHHHTTCSEEEECC
T ss_pred             ccchHHHHHHhcchheecc
Confidence              11134578999999875

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.85  E-value=0.031  Score=49.68  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi  115 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|+++ ....+..+.......+++-...    -....+.+-.-|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            45788889999999999999999997  899999987 3333333322111111111000    0112344567899999


Q ss_pred             cCCCCCC-C--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424          116 PAGVPRK-P--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       116 ~ag~p~k-~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      .+|.... +  ..+..+   .+..|+    .+.+...+.+.+. ..+.||+++-
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS  135 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVAS  135 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-cccccccccc
Confidence            9986432 2  123322   344554    4455555555443 3677777753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.85  E-value=0.034  Score=46.41  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=44.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .++.||.|+|+ |+.+.++++.|...+ +.+|.+++.+..+  +..|.+...  . ....   +  ....++|+||.+..
T Consensus        15 ~~~~~vlIlGa-GGaarai~~aL~~~g-~~~I~I~nR~~~k--a~~L~~~~~--~-~~~~---~--~~~~~~DliINaTp   82 (167)
T d1npya1          15 NKNAKVIVHGS-GGMAKAVVAAFKNSG-FEKLKIYARNVKT--GQYLAALYG--Y-AYIN---S--LENQQADILVNVTS   82 (167)
T ss_dssp             CTTSCEEEECS-STTHHHHHHHHHHTT-CCCEEEECSCHHH--HHHHHHHHT--C-EEES---C--CTTCCCSEEEECSS
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCC-CCEEEEecccHHH--HHHHHHhhh--h-hhhh---c--ccccchhhheeccc
Confidence            35679999999 999999999998877 4689999987622  222322111  1 1111   1  12368999999743

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.75  E-value=0.11  Score=47.46  Aligned_cols=113  Identities=16%  Similarity=0.248  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----------hHHHHHHHhcccCCCeEEEEe-CCCCh-----
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----------TPGVTADISHMDTGAVVRGFL-GQPQL-----  103 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----------~~g~a~DL~~~~~~~~v~~~~-~t~dl-----  103 (390)
                      .+.+.|.||++++|..++..|+..+.  .|++.|++.           +...+.++....  ....... ...+.     
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc--cccccccchHHHHHHHHH
Confidence            34566779999999999999999997  899999864           122233333221  1222111 11121     


Q ss_pred             --hhhhCCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          104 --ENALTGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       104 --~~al~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                        .+.+-.-|++|..||..+...   ++..   ..+..|+    ...+.+.+.+.+.. .+.||+++
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~is  148 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTA  148 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeC
Confidence              233457899999999754321   2332   2344444    45666666666654 56777775

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.72  E-value=0.054  Score=45.34  Aligned_cols=97  Identities=16%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhh------CCC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TGM  110 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al------~dA  110 (390)
                      .++..+|.|+|+ |+||...+..++..+. ..++..|.++ ....+.++.-.    .+ +-..+.+..+.+      +++
T Consensus        25 ~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~----~~-i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          25 IEMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGAT----DI-LNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCS----EE-ECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCcc----cc-ccccchhHHHHHHHHhhccCc
Confidence            456679999998 9999998888887663 4689999987 34455555411    11 100112333322      459


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      |+||.+.|.+.                  .+-..+.-..|++.+++++.
T Consensus        98 D~vid~~g~~~------------------~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          98 DRVIMAGGGSE------------------TLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             EEEEECSSCTT------------------HHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEccCCHH------------------HHHHHHHHHhcCCEEEEEee
Confidence            99999987653                  12222333468999888864

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.62  E-value=0.065  Score=44.82  Aligned_cols=70  Identities=10%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc-ccCCCeEEEEeCCCChhhhh--CCCcEEEEcC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENAL--TGMDLVIIPA  117 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~-~~~~~~v~~~~~t~dl~~al--~dADiVIi~a  117 (390)
                      +||+|||+ |.+|...+..+...+-+.=+.++|.+...+  .++.. .......+.+   +|+++.+  .+.|+|+++.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~--~~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKA--KAFATANNYPESTKIH---GSYESLLEDPEIDALYVPL   74 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHH--HHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEECC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCcccc--ccchhccccccceeec---CcHHHhhhccccceeeecc
Confidence            69999999 999999998887776443344789886221  22221 1122344554   4676665  4688999875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.59  E-value=0.2  Score=43.82  Aligned_cols=152  Identities=17%  Similarity=0.130  Sum_probs=89.3

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~al  107 (390)
                      .+++.|+||++++|..++..|+..+.  +|++.|.+.  +.....++.     .++..+... ++          ..+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45788889999999999999999997  999999987  233333332     223322211 11          12334


Q ss_pred             CCCcEEEEcCCCCC-CC--CCCHH---HHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424          108 TGMDLVIIPAGVPR-KP--GMTRD---DLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (390)
Q Consensus       108 ~dADiVIi~ag~p~-k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~  180 (390)
                      ..-|++|..+|.+. .+  ..+..   ..+.-|+.-...+.+....+.. ...+++.+.-.....+-.            
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~------------  145 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGL------------  145 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHH------------
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCc------------
Confidence            57899999887543 22  22332   4466787777777777777763 344555554433222110            


Q ss_pred             CceeecccccHHHHHHHHHHHhCCCCCCCceEEe
Q 016424          181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (390)
Q Consensus       181 ~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~Vi  214 (390)
                       -..+.+---...|-+.+|+.++  ++.|++-.+
T Consensus       146 -~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  176 (241)
T d2a4ka1         146 -AHYAAGKLGVVGLARTLALELA--RKGVRVNVL  176 (241)
T ss_dssp             -HHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEE
T ss_pred             -cccchhhHHHHHHHHHHHHHHh--HhCCEEeee
Confidence             0112221123456788888886  566765554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.57  E-value=0.034  Score=46.43  Aligned_cols=65  Identities=22%  Similarity=0.414  Sum_probs=46.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      ++||+|||+ |.+|+.++..+...+-+.-+.++|.+...         .....+..   ..++.+.+.+.|+|+++..
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------cccccccc---chhhhhhccccceEEEeCC
Confidence            479999999 99999999888887755556688877511         11123333   3466778899999999863

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.033  Score=47.51  Aligned_cols=92  Identities=25%  Similarity=0.334  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      -+.++|.|||. |.+|..++..+...+.  ++..||.....         .......    ..++++.++.||+|++...
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~---------~~~~~~~----~~~l~ell~~sDii~i~~p  105 (188)
T d1sc6a1          42 ARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKL---------PLGNATQ----VQHLSDLLNMSDVVSLHVP  105 (188)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCC---------CCTTCEE----CSCHHHHHHHCSEEEECCC
T ss_pred             ccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccc---------hhhhhhh----hhhHHHHHhhccceeeccc
Confidence            45679999999 9999999998887776  89999986410         0011111    2468899999999999864


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          119 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       119 ~-p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      . +.-.++-.              .+.+....+++++||++=.
T Consensus       106 lt~~T~~li~--------------~~~l~~mk~~a~lIN~aRG  134 (188)
T d1sc6a1         106 ENPSTKNMMG--------------AKEISLMKPGSLLINASRG  134 (188)
T ss_dssp             SSTTTTTCBC--------------HHHHHHSCTTEEEEECSCS
T ss_pred             CCcchhhhcc--------------HHHHhhCCCCCEEEEcCcH
Confidence            3 32223311              1234455789999999744

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.55  E-value=0.089  Score=42.92  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=38.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ||++||. |.+|++++..|...+.  .+ .|+....+  +.++.....  ...     .. .+.+.++|++|+..
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~-~~~~~~~~--~~~~~~~~~--~~~-----~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TL-VWNRTFEK--ALRHQEEFG--SEA-----VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EE-EECSSTHH--HHHHHHHHC--CEE-----CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EE-EEeCCHHH--HHHHHHHcC--Ccc-----cc-cccccceeEEEecc
Confidence            8999999 9999999999987764  44 45554321  122222111  111     12 36678899999874

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.40  E-value=0.025  Score=48.89  Aligned_cols=101  Identities=16%  Similarity=0.277  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC--------------------
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--------------------  100 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t--------------------  100 (390)
                      +||.|||. |+-|..++-.+...++ ..+++.+|.|.     ++|.+.....++..  |.                    
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~i--G~~~t~G~G~g~~p~~g~~aa~   72 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQI--GENITRGLGAGGRPEIGEQAAL   72 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEEC--CTTTTTTSCCTTCHHHHHHHHH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEec--ccccCCCcccccCchhhHhHHH
Confidence            58999999 9999999987776553 45888899874     33444332222221  21                    


Q ss_pred             ---CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          101 ---PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       101 ---~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                         ..+.+.+.++|+||+++|..-.-|       ..-+|++.++++...    --.+-++|=|-
T Consensus        73 e~~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake~g----~lvv~ivtlPF  125 (194)
T d1w5fa1          73 ESEEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKEMG----ILTVAIVTTPF  125 (194)
T ss_dssp             HTHHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHTT----CEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHHcC----CceEEEEeech
Confidence               146677999999999987653211       333566666666532    12344556564

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.29  E-value=0.14  Score=45.11  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCC--CcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCC---------CChhhhh
Q 016424           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ---------PQLENAL  107 (390)
Q Consensus        40 ~~~KI~VIGa~G--~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t---------~dl~~al  107 (390)
                      +.+++.|.||+|  +||..++..|+..+.  +|++.|+++ +...+.++........+.....+         .+..+.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            456889999876  799999999999987  999999987 44455555543222222211111         1223445


Q ss_pred             CCCcEEEEcCCCC
Q 016424          108 TGMDLVIIPAGVP  120 (390)
Q Consensus       108 ~dADiVIi~ag~p  120 (390)
                      -..|++|..+|..
T Consensus        82 g~id~lV~nag~~   94 (274)
T d2pd4a1          82 GSLDFIVHSVAFA   94 (274)
T ss_dssp             SCEEEEEECCCCC
T ss_pred             CCCCeEEeecccc
Confidence            6889999988764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.01  Score=54.70  Aligned_cols=109  Identities=21%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHHHHHHhcc-cCCCeEEEEeCCCChhhhhC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGVTADISHM-DTGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~a~DL~~~-~~~~~v~~~~~t~dl~~al~  108 (390)
                      ..||+|.|| |.-|..++.++..    .++     .+.++++|.+.  .++..-++... ....+-.......++.++++
T Consensus        25 d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          25 EHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHH
Confidence            359999999 9999888876543    333     25699999976  12211112111 00011000001236778876


Q ss_pred             --CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 016424          109 --GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  164 (390)
Q Consensus       109 --dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~  164 (390)
                        +.|++|-+.|.+.--              =+++.+.|.+.|++.+|+-.+||..-.
T Consensus       104 ~~kptvliG~S~~~g~f--------------t~evi~~Ma~~~~~PIIFaLSNPt~~~  147 (294)
T d1pj3a1         104 ILKPSTIIGVAGAGRLF--------------TPDVIRAMASINERPVIFALSNPTAQA  147 (294)
T ss_dssp             HHCCSEEEECCCSSCCS--------------CHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             hcCCceEEEecCCCCcC--------------CHHHHHHHHhcCCCcEEEEccCCCCcC
Confidence              888888877655321              136777788899999999999997643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.28  E-value=0.011  Score=52.55  Aligned_cols=111  Identities=17%  Similarity=0.277  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hH---HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~---g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVI  114 (390)
                      +.+++.|.||++++|..++..|+..+.  +|++.|+++  ..   ....|+.+..   .++-..  ....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~~--~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRAF--TAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHHH--HHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHHH--HHHHHhcCCceEEE
Confidence            345788889999999999999999987  899999986  11   1112222211   111000  12234566789999


Q ss_pred             EcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424          115 IPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       115 i~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..+|.....   ..+..   ..+..|+.    ..+.+.+.+.+. ..+.||+++
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~is  131 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIG  131 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEc
Confidence            999864321   22332   23455543    344555555544 456677775

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.0034  Score=53.04  Aligned_cols=74  Identities=22%  Similarity=0.192  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .++||+|+||+|.+|+.++..+...+-+.=+..+|.........|+.....  ...+..   +.|+++.++++|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            357999999999999999998887753222345665442222233333221  233443   24667888999987653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.074  Score=48.19  Aligned_cols=115  Identities=12%  Similarity=0.055  Sum_probs=67.7

Q ss_pred             CEE-EEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h--HHHHHHHhcc---cCCCeEEEEeCC-CC---hhhhhC--
Q 016424           42 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHM---DTGAVVRGFLGQ-PQ---LENALT--  108 (390)
Q Consensus        42 ~KI-~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~--~g~a~DL~~~---~~~~~v~~~~~t-~d---l~~al~--  108 (390)
                      +|| .|+||+|.||+.++..|...+.  +|+-+|... .  .+...++...   ....+++.+.+. +|   +..++.  
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            489 5889999999999999988887  899999854 1  1111111111   112355655431 12   223333  


Q ss_pred             CCcEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEec
Q 016424          109 GMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLIS  158 (390)
Q Consensus       109 dADiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p--~a~iiv~t  158 (390)
                      +.|+|+..++......  ....+....|+.-...+...+.+++-  ...++.+|
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S  132 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  132 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence            4457777665432211  23445567788888888888888762  34565554

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.18  E-value=0.06  Score=48.36  Aligned_cols=110  Identities=22%  Similarity=0.265  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC----------hhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~al  107 (390)
                      .+.+.|.||++++|..++..|+..+.  +|++.|+++  +.....++..     ++..+.. -++          ..+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHh
Confidence            45788889999999999999999987  899999986  3334444432     2222211 111          12335


Q ss_pred             CCCcEEEEcCCCCCCC-------CCCH----HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKP-------GMTR----DDLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~-------g~~r----~~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..-|++|..+|.....       .+..    ...+..|    ....+.+.+.+.+.. ..+|++.|
T Consensus        78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S  142 (276)
T d1bdba_          78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTIS  142 (276)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECC
T ss_pred             CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeee
Confidence            5789999998863221       1121    1234444    345566666665543 44444444

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.19  Score=43.82  Aligned_cols=158  Identities=15%  Similarity=0.175  Sum_probs=85.0

Q ss_pred             CCCEEEEEcCCC--CcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCC----------hhhh
Q 016424           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ----------LENA  106 (390)
Q Consensus        40 ~~~KI~VIGa~G--~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~d----------l~~a  106 (390)
                      +.++|.|.||+|  ++|..++..|+..+.  +|++.|.++ ....+.++........... ....+          ..+.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQ-CDVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceee-cccchHHHHHHHHHHhhhc
Confidence            356888889877  789999999999987  899999987 4444444443321111111 11112          1223


Q ss_pred             hCCCcEEEEcCCCCCCCC---C-----CH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHH
Q 016424          107 LTGMDLVIIPAGVPRKPG---M-----TR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKK  174 (390)
Q Consensus       107 l~dADiVIi~ag~p~k~g---~-----~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~  174 (390)
                      ...-|++|..++..-...   .     ..   ...+.-|......+.+.+..+- +...++++|-.....          
T Consensus        81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~----------  150 (258)
T d1qsga_          81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  150 (258)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred             ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc----------
Confidence            345678887766432111   1     11   1223455566666666666554 445566655332111          


Q ss_pred             hCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEe
Q 016424          175 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (390)
Q Consensus       175 ~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~Vi  214 (390)
                        +.|..-..+.+---...+-+.+|..++  ++.|++-.+
T Consensus       151 --~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I  186 (258)
T d1qsga_         151 --AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  186 (258)
T ss_dssp             --BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             --CCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeecc
Confidence              111111122211113456778888886  677877665

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.12  E-value=0.04  Score=47.54  Aligned_cols=91  Identities=21%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC-
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG-  118 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag-  118 (390)
                      ..++|+|||. |.||+.++..+...+.  ++..||.....+         ....+..    .++++.++.||+|++..- 
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~---------~~~~~~~----~~l~~l~~~~D~v~~~~pl  107 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG---------DHPDFDY----VSLEDLFKQSDVIDLHVPG  107 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS---------CCTTCEE----CCHHHHHHHCSEEEECCCC
T ss_pred             cceeeeeeec-ccccccccccccccce--eeeccCCccchh---------hhcchhH----HHHHHHHHhcccceeeecc
Confidence            3479999999 9999999999987776  899999864210         0112232    357888999999999752 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      .+.-.++-       |       .+.+....+++++||++=.
T Consensus       108 t~~T~~li-------~-------~~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         108 IEQNTHII-------N-------EAAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             CGGGTTSB-------C-------HHHHHHSCTTEEEEECSCT
T ss_pred             cccccccc-------c-------HHHhhccCCceEEEecccH
Confidence            22222221       1       1334445689999999854

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.06  E-value=0.051  Score=47.45  Aligned_cols=72  Identities=17%  Similarity=0.313  Sum_probs=48.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-------------------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-------------------  100 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-------------------  100 (390)
                      ..||.|||. |+-|..++-.+...++ ..+++.+|.|.     .+|.+.....++..  |.                   
T Consensus        15 ~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~i--g~~~t~g~Gag~~p~~g~~aa   86 (209)
T d2vapa1          15 KAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA-----QQLIRTKADKKILI--GKKLTRGLGAGGNPKIGEEAA   86 (209)
T ss_dssp             CCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH-----HHHHTSCCSEEEEC--CTTTTTTBCCTTCHHHHHHHH
T ss_pred             CCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH-----HHHhcCCcchhccc--ccccccccccccchHHHHHHH
Confidence            369999999 9999999988877653 45888889874     33444332112221  11                   


Q ss_pred             ----CChhhhhCCCcEEEEcCCCC
Q 016424          101 ----PQLENALTGMDLVIIPAGVP  120 (390)
Q Consensus       101 ----~dl~~al~dADiVIi~ag~p  120 (390)
                          ..+.+.+.++|.||+++|..
T Consensus        87 ~e~~~~I~~~l~~~d~vfi~AGlG  110 (209)
T d2vapa1          87 KESAEEIKAAIQDSDMVFITCGLG  110 (209)
T ss_dssp             HHTHHHHHHHHTTCSEEEEEEETT
T ss_pred             HHHHHHHHHhccCCCEEEEEEeCC
Confidence                14556788888888887654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.1  Score=43.97  Aligned_cols=59  Identities=19%  Similarity=0.369  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-..++|+|||.|.-||.+++.+|.+.+.  .+.++|..                       |.++.+-+++||+||...
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~-----------------------t~~l~~~~~~aDivi~a~   90 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK-----------------------TAHLDEEVNKGDILVVAT   90 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEECC
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccC--ceEEEecc-----------------------cccHHHHHhhccchhhcc
Confidence            34567999999977899999999988875  67776653                       234556677788887777


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus        91 G~~~   94 (170)
T d1a4ia1          91 GQPE   94 (170)
T ss_dssp             CCTT
T ss_pred             cccc
Confidence            7654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.018  Score=51.00  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||.|+|+ |++|+.++..|+..| +.+|+|+|-|.
T Consensus        32 ~VliiG~-GglGs~va~~La~~G-vg~i~lvD~D~   64 (247)
T d1jw9b_          32 RVLIVGL-GGLGCAASQYLASAG-VGNLTLLDFDT   64 (247)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHT-CSEEEEECCCB
T ss_pred             CEEEECC-CHHHHHHHHHHHHcC-CCeEEEECCcc
Confidence            9999999 999999999999888 57999999886

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.86  E-value=0.032  Score=47.71  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+||+|||| |-.|.+.|+.|...+.  ++.|+|.+.
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4459999999 9999999999999987  899999754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.78  E-value=0.016  Score=50.99  Aligned_cols=90  Identities=21%  Similarity=0.208  Sum_probs=57.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~ag~  119 (390)
                      |||.|+||+|.+|+.++..|..++.  +++..|..+.     |+.+.            .++++.++  +.|+||-+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~------------~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNV------------LAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCH------------HHHHHHHHHcCCCEEEeeccc
Confidence            8999999999999999999988887  8888887641     22111            11233443  56888887764


Q ss_pred             CCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 016424          120 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP  150 (390)
Q Consensus       120 p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p  150 (390)
                      .....  .........|......+.........
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cccccccccchhhcccccccccccccccccccc
Confidence            32111  22344455666666666666555543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.76  E-value=0.2  Score=37.40  Aligned_cols=71  Identities=24%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCCCcHH-HHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           41 GFKVAILGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~-~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      .|||=+||- |++|. .+|..|.+.+.  .|.-.|..... ....|....  ..+  +.+ .+ .+.++++|+||.+.++
T Consensus         1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~G--i~i--~~g-h~-~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           1 HMKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLG--IPI--FVP-HS-ADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT--CCE--ESS-CC-TTSCCCCSEEEECTTC
T ss_pred             CcEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCC--CeE--Eee-ec-ccccCCCCEEEEecCc
Confidence            479999999 98987 56788888888  89999987622 223365543  233  333 23 4668999999999988


Q ss_pred             CC
Q 016424          120 PR  121 (390)
Q Consensus       120 p~  121 (390)
                      |.
T Consensus        71 ~~   72 (89)
T d1j6ua1          71 RD   72 (89)
T ss_dssp             CT
T ss_pred             CC
Confidence            75

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.065  Score=45.06  Aligned_cols=59  Identities=20%  Similarity=0.435  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-..++|+|||.|.-||.+++.+|.+.+.  .+...+..                       |.++.+-+++||+||.+.
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~   88 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAV   88 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECS
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhc
Confidence            34567999999977899999999998775  55555432                       346677889999999999


Q ss_pred             CCCC
Q 016424          118 GVPR  121 (390)
Q Consensus       118 g~p~  121 (390)
                      |.|.
T Consensus        89 G~p~   92 (166)
T d1b0aa1          89 GKPG   92 (166)
T ss_dssp             CCTT
T ss_pred             cCcc
Confidence            8764

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.72  E-value=0.27  Score=43.14  Aligned_cols=109  Identities=9%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCCh-------hhhhCCCcEEEE
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL-------ENALTGMDLVII  115 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl-------~~al~dADiVIi  115 (390)
                      ..|.||++++|..++..|+..+.  .|++.|++. .......+.......++..   ..+.       .+.+-.-|++|.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLVn   77 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLVS   77 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEEE
Confidence            46889999999999999999986  899999876 2212222222111223221   2232       233457899998


Q ss_pred             cCCCC--CCC--CCCHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          116 PAGVP--RKP--GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       116 ~ag~p--~k~--g~~r~~---l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+|..  .+|  ..+..+   .+..|    ....+.+.+.+.+.. .+.||+++
T Consensus        78 NAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~is  130 (252)
T d1zmta1          78 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFIT  130 (252)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             CCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccc
Confidence            87753  233  123333   23333    456667777776655 56666665

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.66  E-value=0.055  Score=44.55  Aligned_cols=70  Identities=19%  Similarity=0.397  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag  118 (390)
                      .||+||||+|.+|.-+..+|...+ ...++.++.-+...|.  .+...  ........ .  .+..+.++|+++.+.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~--~~~~~--~~~~~~~~-~--~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK--SLKFK--DQDITIEE-T--TETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTC--EEEET--TEEEEEEE-C--CTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccc--ccccc--CCcccccc-c--chhhhhhhhhhhhccC
Confidence            599999999999999999998887 4778888876542221  11111  12333222 1  2456889999999863

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.63  E-value=0.051  Score=45.56  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCCCcHHH-HHHHHHhCCCCcEE-EEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEc
Q 016424           41 GFKVAILGAAGGIGQP-LAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL-~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~  116 (390)
                      ++||+|||+ |.+|.. .+..+...+...+| .++|.+...  +..+.+..  ...+.+   +|+++.++  +.|+|+++
T Consensus         3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~--~~~~~~~~--~~~~~~---~~~~ell~~~~id~v~I~   74 (181)
T d1zh8a1           3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSH--AEEFAKMV--GNPAVF---DSYEELLESGLVDAVDLT   74 (181)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHH--HHHHHHHH--SSCEEE---SCHHHHHHSSCCSEEEEC
T ss_pred             CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhh--hhhhhccc--ccccee---eeeeccccccccceeecc
Confidence            469999999 999987 46667654433344 488987622  12222211  112333   46777775  57889887


Q ss_pred             C
Q 016424          117 A  117 (390)
Q Consensus       117 a  117 (390)
                      .
T Consensus        75 t   75 (181)
T d1zh8a1          75 L   75 (181)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.62  E-value=0.051  Score=50.22  Aligned_cols=70  Identities=10%  Similarity=0.058  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ....++|||+ |..+...+..+...-.+.++.+||++.  ....+.++.+..  ..+..     +..+++++||+|+.+.
T Consensus       124 ~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~--~~~~~-----~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         124 NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISASV-----QPAEEASRCDVLVTTT  195 (320)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEEE-----CCHHHHTSSSEEEECC
T ss_pred             CccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC--Ccccc-----chhhhhccccEEEEec
Confidence            3468999999 988887777665544488999999987  455666666532  23332     2258899999998753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.56  E-value=0.14  Score=40.20  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+..+|+|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            44569999999 9999999999998886  899998865

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.53  E-value=0.15  Score=44.79  Aligned_cols=117  Identities=21%  Similarity=0.245  Sum_probs=75.5

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hH--------HHHHHHhcccCCCeEEEEeCCCChhhhhC
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP--------GVTADISHMDTGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~--------g~a~DL~~~~~~~~v~~~~~t~dl~~al~  108 (390)
                      -+..||++.|| |..|..++..+.... .++++++|.+.  .+        ....++.+.......     ..++.++++
T Consensus        24 l~d~riv~~GA-GsAg~gia~~l~~~~-~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~   96 (222)
T d1vl6a1          24 IEEVKVVVNGI-GAAGYNIVKFLLDLG-VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL-----SGDLETALE   96 (222)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHT-CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCC-----CSCHHHHHT
T ss_pred             hhhcEEEEECh-HHHHHHHHHHHHHhc-ccceEeecceeEEEcCcccccccHHHHHHHhhhcchhh-----hcchHhhcc
Confidence            34579999999 999999998887654 47999999985  11        122233332211111     247889999


Q ss_pred             CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc
Q 016424          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  187 (390)
Q Consensus       109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t  187 (390)
                      ++|+++-+..    +|.-+.              +.|.+.++..+|+-.|||..-..+   +..|.. |   +-+|++.
T Consensus        97 g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~---~~a~~~-G---~ai~AtG  150 (222)
T d1vl6a1          97 GADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDP---ELAREA-G---AFIVATG  150 (222)
T ss_dssp             TCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCH---HHHHHT-T---CSEEEES
T ss_pred             Ccceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhh---hhheec-c---ceEEecC
Confidence            9998877653    232111              246677899999999999876654   223443 2   4566653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.49  E-value=0.024  Score=49.86  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+++||+|||| |-.|.+.|+.|++.+.  +++|+|-.+
T Consensus        27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            566789999999 9999999999999887  899999765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.21  Score=40.26  Aligned_cols=100  Identities=7%  Similarity=-0.037  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh----hhhhCCCcEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL----ENALTGMDLV  113 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl----~~al~dADiV  113 (390)
                      ..+|.|+|. |.+|..++..|...+.  +++++|.++  ......++...    .+.+..|. +|.    ...+.+||.|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhccccCCEE
Confidence            348999999 9999999999988876  789999886  22333333321    12222222 221    3446789999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCc
Q 016424          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVN  162 (390)
Q Consensus       114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd  162 (390)
                      |++.+..           ..|+.+    +..+++.+|+..++.- .+|-+
T Consensus        76 i~~~~~d-----------~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          76 LALSDND-----------ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSCH-----------HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEccccH-----------HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            9986321           344433    4455677888755555 45543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.12  Score=43.14  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      ..++|+|+|- |.+|..+|..+...+.  .+..+|+++..+...- .+   .-++.      .+++++..||+||.+.|.
T Consensus        23 ~Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A~-~d---G~~v~------~~~~a~~~adivvtaTGn   89 (163)
T d1li4a1          23 AGKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQAA-ME---GYEVT------TMDEACQEGNIFVTTTGC   89 (163)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH-HT---TCEEC------CHHHHTTTCSEEEECSSC
T ss_pred             cCCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHhh-cC---ceEee------ehhhhhhhccEEEecCCC
Confidence            4458999999 9999999999998887  9999999984333221 11   11222      357999999999998775


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCccc
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNST  164 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPvd~~  164 (390)
                      +.-  .+               .+.+.+.-+++++.|++ -...+-
T Consensus        90 ~~v--I~---------------~eh~~~MKdgaIL~N~Ghfd~EId  118 (163)
T d1li4a1          90 IDI--IL---------------GRHFEQMKDDAIVCNIGHFDVEID  118 (163)
T ss_dssp             SCS--BC---------------HHHHTTCCTTEEEEECSSSTTSBC
T ss_pred             ccc--hh---------------HHHHHhccCCeEEEEeccccceec
Confidence            431  11               23455556788888886 334444

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.33  Score=42.88  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             CCEEEEE-cCCCCcHHHHHHHHHhC-CCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC----------hhh
Q 016424           41 GFKVAIL-GAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LEN  105 (390)
Q Consensus        41 ~~KI~VI-Ga~G~vG~~~a~~l~~~-~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~  105 (390)
                      .++|+|| ||++++|..++..|+.. +.  .|++.+++.  ++..+.+|....  .++..+.. -+|          ..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~   77 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   77 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHH
Confidence            3578655 99999999999988764 54  899999987  345556665432  22222221 122          223


Q ss_pred             hhCCCcEEEEcCCCCCC-CCC--CHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          106 ALTGMDLVIIPAGVPRK-PGM--TRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       106 al~dADiVIi~ag~p~k-~g~--~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      .+..-|++|..||+... +..  +..   ..+..|.--...+++.+...- +.+.+++++
T Consensus        78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            34579999999997432 222  222   234455544445555444332 345666665

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.23  E-value=0.17  Score=41.20  Aligned_cols=118  Identities=20%  Similarity=0.235  Sum_probs=69.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhh----hCCCcE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDL  112 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~a----l~dADi  112 (390)
                      .++..+|.|+|+ |.+|...+..++..+.  +++..|.++ ....+.++..     ...+....+|..++    ..+.|.
T Consensus        25 ~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~~g~~~   96 (166)
T d1llua2          25 ARPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLGA-----SLTVNARQEDPVEAIQRDIGGAHG   96 (166)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC-----SEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccCc-----cccccccchhHHHHHHHhhcCCcc
Confidence            456679999998 9999999988888874  899999987 3445554431     11111112343333    345677


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-HHHHHHHHHhCCCCCCceeecc
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-PIAAEVFKKAGTYDPKKLLGVT  187 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t-~i~ae~~~~~s~~p~~kviG~t  187 (390)
                      +|+..+.+.                  .+-..++-..|.+.+++++.|-+.+. ++ ..++.+     ..+++|+.
T Consensus        97 ~i~~~~~~~------------------~~~~~~~~l~~~G~iv~~G~~~~~~~~~~-~~~~~k-----~~~i~Gs~  148 (166)
T d1llua2          97 VLVTAVSNS------------------AFGQAIGMARRGGTIALVGLPPGDFPTPI-FDVVLK-----GLHIAGSI  148 (166)
T ss_dssp             EEECCSCHH------------------HHHHHHTTEEEEEEEEECCCCSSEEEEEH-HHHHHT-----TCEEEECC
T ss_pred             cccccccch------------------HHHHHHHHhcCCcEEEEEEecCCCccCCH-HHHHhC-----CcEEEEEe
Confidence            777654321                  12234444568999998876643221 11 122222     35788873

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.18  E-value=0.66  Score=40.41  Aligned_cols=110  Identities=20%  Similarity=0.266  Sum_probs=66.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhhCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALTG  109 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al~d  109 (390)
                      |.|.||++++|..++..|+..+.  +|++.|.+.   ++....++...  ..++..+.. -+|.          .+.+..
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45559999999999999999987  888888765   33344444432  234443322 1221          222357


Q ss_pred             CcEEEEcCCCCCCCC---CCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424          110 MDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       110 ADiVIi~ag~p~k~g---~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      -|++|..+|......   ++..   ..+..|    ....+.+.+.+.+. ..+.||+++
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnis  137 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIA  137 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEc
Confidence            899999988644321   2322   234444    44556666666554 467777775

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.95  E-value=0.051  Score=46.98  Aligned_cols=34  Identities=15%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~   76 (390)
                      ...||+|||| |-.|.++|..|+..++  +++++|.+
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERS   36 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            3579999999 9999999999999997  99999975

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.90  E-value=0.18  Score=42.08  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhh-----hhCCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN-----ALTGMD  111 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~-----al~dAD  111 (390)
                      .++..+|.|+|+ |+||...+..++..+ ...++..|+++ ....+.++.....   +...........     .=.++|
T Consensus        26 v~~G~~VlV~G~-G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~~~---i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          26 VTPGSTCAVFGL-GCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATDC---LNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEE---ECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCCcc---cCCccchhhhhhhHhhhhcCCCc
Confidence            456689999999 999999998888777 46889999988 4556666642110   000000001111     126899


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCc
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVN  162 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~-a~iiv~tNPvd  162 (390)
                      +||-+.|.+.                  .+-..++-..|. +.++++..|.+
T Consensus       101 ~vie~~G~~~------------------~~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2         101 YSLDCAGTAQ------------------TLKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             EEEESSCCHH------------------HHHHHHHTBCTTTCEEEECCCSSS
T ss_pred             EEEEecccch------------------HHHHHHHHhhcCCeEEEecCCCCC
Confidence            9999987652                  223334444574 88988987765

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.84  E-value=0.04  Score=46.39  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=29.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      |||+|||| |.+|..+|..|.....-.+|.+++.++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            89999999 999999999888765556899998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.56  E-value=0.036  Score=47.61  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      |||+|||| |-.|.+.|+.|.+.+.  ++.|+|..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            79999999 9999999999999987  899999865

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=92.44  E-value=0.042  Score=50.74  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al  107 (390)
                      ..||+|.|| |..|..++.+|..    .++     .+.++++|.+.  .... .|+....  +.....   ..+++.+++
T Consensus        25 d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r-~d~~~~k~~~a~~~~---~~~~l~~~i   99 (308)
T d1o0sa1          25 QEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR-KEMNPRHVQFAKDMP---ETTSILEVI   99 (308)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC-SSCCGGGTTTCBSSC---CCCCHHHHH
T ss_pred             HcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCC-cccCHHHHHHHHhcc---cCCcHHHHH
Confidence            359999999 9999998876543    332     24699999986  1221 2333211  111111   123455555


Q ss_pred             CCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 016424          108 TGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  164 (390)
Q Consensus       108 ~dA--DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~  164 (390)
                      +.+  +++|-+.+.+.-.              -+++.+.|.++|++.+|+-.+||..-.
T Consensus       100 ~~~kptvliG~s~~~g~f--------------t~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         100 RAARPGALIGASTVRGAF--------------NEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HHHCCSEEEECSSCTTCS--------------CHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             hccccccEEecccccCCC--------------CHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            544  4666665544211              135667788899999999999998644

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.39  E-value=0.078  Score=45.80  Aligned_cols=102  Identities=20%  Similarity=0.275  Sum_probs=63.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEE-------E--------------eCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRG-------F--------------LGQ  100 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~-------~--------------~~t  100 (390)
                      +|.|||- |+-|..++..+...++ -.+++.+|.|.     .+|.......++..       .              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA-----QALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH-----HHHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH-----HHHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            7889999 9999999988887764 35788888874     22332221111111       1              001


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      ..+.++++++|+||+++|..-.-|       .--+|++.++++...    --.+-++|-|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g----~l~v~ivt~PF  126 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLG----ALTVGVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHT----CEEEEEEEECC
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcC----CcEEEEEecCh
Confidence            245678999999999997654322       234677777777652    11245566664

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.28  Score=43.49  Aligned_cols=95  Identities=14%  Similarity=0.095  Sum_probs=58.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhh--hCCCcEEEEcCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA--LTGMDLVIIPAGV  119 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~a--l~dADiVIi~ag~  119 (390)
                      +||.|+||+|.+|+.++..|...+.  ++++.|....    .|+.+..            ...+.  -.+.|+|+..++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999988875  4555554320    0111100            01111  1246788877643


Q ss_pred             CCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 016424          120 PRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (390)
Q Consensus       120 p~k~---g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~i  154 (390)
                      .-..   .....+.+..|+.....+...+.+++-.-+|
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i  102 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLL  102 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            3111   1234456778999889999998888644433

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.35  E-value=0.19  Score=42.37  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCC-CCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHH---HHhcccCCCeEEEEeCCCChhhhhCCCcE
Q 016424           40 AGFKVAILGAA-GGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        40 ~~~KI~VIGa~-G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~---DL~~~~~~~~v~~~~~t~dl~~al~dADi  112 (390)
                      +..||++||=. .+|..+++.++..-+.  +|.+.-...   ......   ++.... ...++.+   +|+++|+++||+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~eai~~aDv   77 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTLT---EDPKEAVKGVDF   77 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEEE---SCHHHHTTTCSE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEEE---eChhhccccccE
Confidence            35799999951 3577777777777776  999998865   122222   232222 3566653   588999999999


Q ss_pred             EEEcC
Q 016424          113 VIIPA  117 (390)
Q Consensus       113 VIi~a  117 (390)
                      |....
T Consensus        78 Vyt~~   82 (185)
T d1dxha2          78 VHTDV   82 (185)
T ss_dssp             EEECC
T ss_pred             EEeeh
Confidence            88764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=92.30  E-value=0.095  Score=43.23  Aligned_cols=77  Identities=21%  Similarity=0.217  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHH----------------hcccCCCeEEEEeC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADI----------------SHMDTGAVVRGFLG   99 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL----------------~~~~~~~~v~~~~~   99 (390)
                      +|++|+|+|++|+||.+..--+.+.+---+|..+--+.    +..++.++                .+......++++.+
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g   80 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAG   80 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEES
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccC
Confidence            36799999999999999887777765322444443333    23333332                12112234555554


Q ss_pred             CCChh-hhhCCCcEEEEc
Q 016424          100 QPQLE-NALTGMDLVIIP  116 (390)
Q Consensus       100 t~dl~-~al~dADiVIi~  116 (390)
                      .+.+. -+..++|+|+.+
T Consensus        81 ~~~l~~~~~~~~D~vv~A   98 (150)
T d1r0ka2          81 ADALVEAAMMGADWTMAA   98 (150)
T ss_dssp             HHHHHHHHTSCCSEEEEC
T ss_pred             ccchheecccccceeeee
Confidence            43222 245578988886

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.21  E-value=0.059  Score=46.05  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=30.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +||+|||| |--|.+.|+.|++.+.  ++.++|-.+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            59999999 9999999999999887  899999764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.21  E-value=0.5  Score=38.04  Aligned_cols=119  Identities=17%  Similarity=0.199  Sum_probs=68.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCCh----hhhhCCCcE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDL  112 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl----~~al~dADi  112 (390)
                      .++..+|.|+|+ |.+|...+..++..+.  +++..|.++ ....+.++.     ........++|.    .+...+.|.
T Consensus        25 ~~~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~G-----a~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          25 AKPGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKELG-----ADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             CCTTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT-----CSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhcC-----cceecccccchhhhhcccccCCCce
Confidence            455679999998 9999998888888776  788999876 333444432     111111112232    233566788


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-HHHHHHHHHhCCCCCCceeeccc
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-PIAAEVFKKAGTYDPKKLLGVTM  188 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t-~i~ae~~~~~s~~p~~kviG~t~  188 (390)
                      +|+.++.+.                  .+-..++-..|++.++++..|.+-.. .. ..++.+     ..+++|+..
T Consensus        97 ~v~~~~~~~------------------~~~~a~~~l~~~G~i~~~g~~~~~~~~~~-~~~~~~-----~~~i~gs~~  149 (168)
T d1rjwa2          97 AVVTAVSKP------------------AFQSAYNSIRRGGACVLVGLPPEEMPIPI-FDTVLN-----GIKIIGSIV  149 (168)
T ss_dssp             EEESSCCHH------------------HHHHHHHHEEEEEEEEECCCCSSEEEEEH-HHHHHT-----TCEEEECCS
T ss_pred             EEeecCCHH------------------HHHHHHHHhccCCceEecccccCCCCCCH-HHHHHC-----CcEEEEEee
Confidence            888764321                  12233333468999988866544222 21 122222     257888743

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.18  E-value=0.071  Score=48.58  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +++||+|||| |--|.+.|..|+..+...++++++...
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            4679999999 999999999888877667999999986

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=92.13  E-value=0.6  Score=40.40  Aligned_cols=106  Identities=8%  Similarity=0.048  Sum_probs=63.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCC---ChhhhhCCCcEEEEcCCCC
Q 016424           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP---QLENALTGMDLVIIPAGVP  120 (390)
Q Consensus        44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~---dl~~al~dADiVIi~ag~p  120 (390)
                      |.|+||+|.||+.++..|+.++. .++..+|.-........+.+... ..........   .....+.++++|+..++..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999998873 36777883321111112222211 1111100000   0013457888888888776


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016424          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  151 (390)
Q Consensus       121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~  151 (390)
                      ..+..........|......+.......+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            6666666666666777777777777776643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.09  E-value=0.47  Score=38.53  Aligned_cols=98  Identities=13%  Similarity=0.036  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhh------CCC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TGM  110 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al------~dA  110 (390)
                      .++..+|.|+|++|.+|...+..++..+ ..+++..|.++ ....+.++.     ....+.....|..+.+      ++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~G-----a~~~i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRAG-----ADYVINASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHHT-----CSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHcC-----CceeeccCCcCHHHHHHHHhhcccc
Confidence            4556799999977999998887777655 24799999987 334444442     1111111123433332      468


Q ss_pred             cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHhCCCcEEEEecCC
Q 016424          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE-GIAKCCPNATVNLISNP  160 (390)
Q Consensus       111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~-~I~~~~p~a~iiv~tNP  160 (390)
                      |+|+-+.|.+.                   ..+ .++-..|++.+++++.+
T Consensus        99 d~vid~~g~~~-------------------~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          99 DAVIDLNNSEK-------------------TLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             EEEEESCCCHH-------------------HHTTGGGGEEEEEEEEECCSS
T ss_pred             hhhhcccccch-------------------HHHhhhhhcccCCEEEEeccc
Confidence            99999876431                   111 23334589988888543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.06  E-value=0.058  Score=43.49  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +||+|||| |.+|..++..|...+.-.+|+|+|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            59999999 999999999887765445899999876

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.92  E-value=0.49  Score=41.22  Aligned_cols=114  Identities=15%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCC--CcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEe-CCCCh----------hhh
Q 016424           41 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (390)
Q Consensus        41 ~~KI~VIGa~G--~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~-~t~dl----------~~a  106 (390)
                      .+++.|.||+|  ++|..++..|+..+.  +|++.|.++ ....+.++.......  ..+. .-+|.          .+.
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~v~~~~~~~~~~   83 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGA--LLFRADVTQDEELDALFAGVKEA   83 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCC--EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcc--cccccccCCHHHHHHHHHHHHHh
Confidence            45788889977  799999999999986  899999987 333344333322111  1111 11121          223


Q ss_pred             hCCCcEEEEcCCCCCC-------CCCCHHH---HHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          107 LTGMDLVIIPAGVPRK-------PGMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       107 l~dADiVIi~ag~p~k-------~g~~r~~---l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      +-.-|++|..+|....       ...+..+   .+.-|+.-...+++....+- ..+.|++++
T Consensus        84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            4568999998876321       1223332   34556655556665554432 356677765

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.91  E-value=0.28  Score=42.59  Aligned_cols=75  Identities=16%  Similarity=0.135  Sum_probs=48.8

Q ss_pred             EEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC---CC-----------hhhhh
Q 016424           45 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ---PQ-----------LENAL  107 (390)
Q Consensus        45 ~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t---~d-----------l~~al  107 (390)
                      .|.||++++|..++..|+..+.  +|++.|.+.   .+..+.++........+......   .+           ..+.+
T Consensus         5 lVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF   82 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence            5679999999999999999997  999999986   23455566544321122111111   11           11234


Q ss_pred             CCCcEEEEcCCCCC
Q 016424          108 TGMDLVIIPAGVPR  121 (390)
Q Consensus       108 ~dADiVIi~ag~p~  121 (390)
                      ..-|++|..+|...
T Consensus        83 g~iDilvnnAG~~~   96 (266)
T d1mxha_          83 GRCDVLVNNASAYY   96 (266)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCccCC
Confidence            56899999998643

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=91.89  E-value=0.056  Score=49.65  Aligned_cols=124  Identities=16%  Similarity=0.230  Sum_probs=71.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al  107 (390)
                      ..||+|.|| |..|..++.++..    .++     .+.++++|.+.  ..+. .|+.+..  +..+..   ..+++.+.+
T Consensus        25 d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R-~~l~~~k~~~a~~~~---~~~~l~~~i   99 (298)
T d1gq2a1          25 DHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGR-ASLTPEKEHFAHEHC---EMKNLEDIV   99 (298)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTC-SSCCTTGGGGCBSCC---CCCCHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCC-cccCHHHHHHHHHhh---hhhhhHHHh
Confidence            459999999 9999988876642    232     35799999987  1211 2333211  100111   112444555


Q ss_pred             CC--CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424          108 TG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (390)
Q Consensus       108 ~d--ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG  185 (390)
                      +.  .+++|-+.+.|   |-           +-+++.+.|.+++++.+|+-.+||..-.-....++++-..|   +-+|.
T Consensus       100 ~~vkptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~G---~ai~A  162 (298)
T d1gq2a1         100 KDIKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEG---RGIFA  162 (298)
T ss_dssp             HHHCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTT---CCEEE
T ss_pred             hccChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhccc---ceEEe
Confidence            43  56777766554   31           11255667778899999999999986443323344332222   56666


Q ss_pred             c
Q 016424          186 V  186 (390)
Q Consensus       186 ~  186 (390)
                      +
T Consensus       163 s  163 (298)
T d1gq2a1         163 S  163 (298)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.85  E-value=0.17  Score=41.85  Aligned_cols=98  Identities=16%  Similarity=0.272  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhC-----CCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALT-----GMD  111 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-----dAD  111 (390)
                      .++..+|.|+|+ |++|...+..++..+. ..+...|.++ ....+.++.-    ..+- .....|..+.++     +.|
T Consensus        26 ~~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga----~~~i-~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA----THVI-NSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC----SEEE-ETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC----eEEE-eCCCcCHHHHHHHHcCCCCc
Confidence            455679999999 9999999988877663 4678889877 3445555531    1111 111234444332     489


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      +||.+.|.+.               .+   -..++-..|.+.+++++.|
T Consensus        99 ~vid~~G~~~---------------~~---~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          99 FALESTGSPE---------------IL---KQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             EEEECSCCHH---------------HH---HHHHHTEEEEEEEEECCCC
T ss_pred             EEEEcCCcHH---------------HH---HHHHhcccCceEEEEEeec
Confidence            9999986441               11   1223334689998887644

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.83  E-value=0.14  Score=46.02  Aligned_cols=103  Identities=16%  Similarity=0.033  Sum_probs=58.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hH---HHHHHHhcccCCCeEEEEeCC-CCh---hhhh--C
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TP---GVTADISHMDTGAVVRGFLGQ-PQL---ENAL--T  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~---g~a~DL~~~~~~~~v~~~~~t-~dl---~~al--~  108 (390)
                      +|+.|+||+|.+|++++..|...+.  +|+-+|...    ..   ....+..... ...++.+.+. ++.   ..++  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVN-KALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhcc-ccceEEEEccccCHHHHHHHHhhh
Confidence            4788899999999999999999887  899999742    11   1111111111 2345544332 232   2223  3


Q ss_pred             CCcEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Q 016424          109 GMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAK  147 (390)
Q Consensus       109 dADiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~  147 (390)
                      +.|+||-.|+.+....  ..-......|......+...+.+
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~  119 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS  119 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhh
Confidence            6699999987643221  12234455665555555555443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.15  Score=44.39  Aligned_cols=46  Identities=22%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHh
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS   86 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~   86 (390)
                      -|.+.+.|.||++++|..++..|+..+.  .|++.|+++  ++..+.++.
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~   50 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG   50 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC
Confidence            4556777889999999999999999997  899999987  455555554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.56  E-value=0.061  Score=44.50  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +.||+|||| |-.|...|..|...+. +++.++|..+
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            569999999 9999999999999885 3588999876

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.55  E-value=0.083  Score=48.26  Aligned_cols=40  Identities=23%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHH
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT   82 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a   82 (390)
                      +++||+|||| |--|.+.|..|+.++.  ++.++|-++ .-|.+
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCee
Confidence            4679999999 9999999999998876  999999987 34444

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.28  Score=48.18  Aligned_cols=33  Identities=12%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||.|||+ |++|+.++..|+..| +..|.|+|-+.
T Consensus        27 ~VlvvG~-gglG~Ei~knLvl~G-Vg~itivD~d~   59 (529)
T d1yova1          27 HVCLINA-TATGTEILKNLVLPG-IGSFTIIDGNQ   59 (529)
T ss_dssp             EEEECCC-SHHHHHHHHHHHTTT-CSEEEEECCSB
T ss_pred             CEEEECC-CHHHHHHHHHHHHhc-CCEEEEEcCCc
Confidence            9999999 999999999999888 57899999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.095  Score=45.17  Aligned_cols=37  Identities=22%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .++..||+|||| |--|.+.|+.|...+.  ++.+++-.+
T Consensus         2 ~~~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           2 TKKTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             SSCCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            356779999999 9999999999999987  899998765

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=91.25  E-value=1.3  Score=38.19  Aligned_cols=117  Identities=16%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHHHHHHHhcccCCCeEEEEeCC-CCh---h---h
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLGQ-PQL---E---N  105 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g~a~DL~~~~~~~~v~~~~~t-~dl---~---~  105 (390)
                      +++..-|.|.||+|++|..++..|+..+. ..|+|+..+.     ......++...  ..++..+... +|.   .   +
T Consensus         6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~~   82 (259)
T d2fr1a1           6 WKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLG   82 (259)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCcCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhhc
Confidence            55666889999999999999999988873 4688886543     33444555432  3455554321 221   1   1


Q ss_pred             hhC---CCcEEEEcCCCCCCCC---CCHHH---HHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          106 ALT---GMDLVIIPAGVPRKPG---MTRDD---LFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       106 al~---dADiVIi~ag~p~k~g---~~r~~---l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      .+.   .-|.||..+|......   ++..+   .+..|+.-...+.+.+... +.+.+++++
T Consensus        83 ~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          83 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             cccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence            122   4677888888654332   23222   2445666555565555443 445555554

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=91.23  E-value=0.14  Score=44.36  Aligned_cols=73  Identities=16%  Similarity=0.132  Sum_probs=44.8

Q ss_pred             CCCCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEE
Q 016424           39 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLV  113 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiV  113 (390)
                      .++.||+|||+ |.+|.. +...+...+.+.=+.++|++.  +...+.++. .. ...++.+   +|+++.++  +.|+|
T Consensus        31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~~---~d~~ell~~~~iD~V  104 (221)
T d1h6da1          31 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYG-VD-PRKIYDY---SNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTT-CC-GGGEECS---SSGGGGGGCTTCCEE
T ss_pred             CCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhc-cc-ccccccc---Cchhhhcccccceee
Confidence            35679999999 999974 455555544443345999986  233333221 11 1344443   46777675  57889


Q ss_pred             EEcC
Q 016424          114 IIPA  117 (390)
Q Consensus       114 Ii~a  117 (390)
                      +|+.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            8875

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.19  E-value=0.26  Score=40.38  Aligned_cols=72  Identities=22%  Similarity=0.241  Sum_probs=47.5

Q ss_pred             CCCEEEEEcC-CCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHH---HhcccCCCeEEEEeCCCChhhhhCCCcE
Q 016424           40 AGFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTAD---ISHMDTGAVVRGFLGQPQLENALTGMDL  112 (390)
Q Consensus        40 ~~~KI~VIGa-~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~D---L~~~~~~~~v~~~~~t~dl~~al~dADi  112 (390)
                      ++.||+++|= ...|-.+++.++...+.  ++++.-..+   .......   +... ....+..+   +|+++|+++||+
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~-~~~~i~~~---~d~~~ai~~aDv   75 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKE-TDGSVSFT---SNLEEALAGADV   75 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHH-HCCEEEEE---SCHHHHHTTCSE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhh-cCCceEEE---ecHHHhhhhhhh
Confidence            4579999994 23566777777766675  888887755   1222222   2222 23567763   588999999999


Q ss_pred             EEEcC
Q 016424          113 VIIPA  117 (390)
Q Consensus       113 VIi~a  117 (390)
                      |....
T Consensus        76 iyt~~   80 (161)
T d1vlva2          76 VYTDV   80 (161)
T ss_dssp             EEECC
T ss_pred             eeccc
Confidence            99864

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.42  Score=39.96  Aligned_cols=71  Identities=11%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCC--CcHHHHHHHHHhCCCCcEEEEEeCCc---hHH---HHHHHhcccCCCeEEEEeCCCChhhhhCCCc
Q 016424           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN---TPG---VTADISHMDTGAVVRGFLGQPQLENALTGMD  111 (390)
Q Consensus        40 ~~~KI~VIGa~G--~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g---~a~DL~~~~~~~~v~~~~~t~dl~~al~dAD  111 (390)
                      +..||+++|= |  .|..+++.++..-+.  +|+++-..+   ...   .+.+.... .+..+..+   .|.+++++++|
T Consensus         4 ~~l~i~~vGD-~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~~---~d~~~a~~~aD   76 (183)
T d1duvg2           4 NEMTLVYAGD-ARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITLT---EDVAKGVEGAD   76 (183)
T ss_dssp             GGCEEEEESC-TTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEEE---SCHHHHHTTCS
T ss_pred             CCCEEEEEcC-CccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEEE---echhhccccCC
Confidence            4579999996 4  466666666666665  899998865   122   22223222 23566653   58899999999


Q ss_pred             EEEEcC
Q 016424          112 LVIIPA  117 (390)
Q Consensus       112 iVIi~a  117 (390)
                      +|..+.
T Consensus        77 vvyt~~   82 (183)
T d1duvg2          77 FIYTDV   82 (183)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            998864

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=2.6  Score=37.15  Aligned_cols=116  Identities=13%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             CEEEEE-cCCCCcHHHHHHHHHhCCC-CcEEEEEeCCc--hHHHHHHHhccc-CCCeEEEEeC-CCChhh---h-----h
Q 016424           42 FKVAIL-GAAGGIGQPLAMLMKINPL-VSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLG-QPQLEN---A-----L  107 (390)
Q Consensus        42 ~KI~VI-Ga~G~vG~~~a~~l~~~~~-~~eL~L~Di~~--~~g~a~DL~~~~-~~~~v~~~~~-t~dl~~---a-----l  107 (390)
                      +||++| ||+++||..++..|+..+. +-.+.+-..+.  ............ ...++..+.. -+|.++   +     -
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            488876 9999999999999998874 22222333332  111211111111 1234554432 123211   0     1


Q ss_pred             CCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      ..-|++|..+|......   .+..   ..+..|+    ...+.+.+.+.+.. .+.||+++
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~is  141 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTG  141 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEe
Confidence            36899999888654322   2222   2344453    45666667776655 45566664

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.10  E-value=0.69  Score=40.43  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al  107 (390)
                      +.+.|.||++++|..++..|+..+.  ++++.+...   .+....++.+..  .++..+.. -+|.          .+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4677889999999999999999987  788765544   334445555432  23333321 1221          1234


Q ss_pred             CCCcEEEEcCCCCC-CCC--CCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          108 TGMDLVIIPAGVPR-KPG--MTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       108 ~dADiVIi~ag~p~-k~g--~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      -.-|++|..+|... .+-  .+..   ..+..|+.-...+++.+..+- .++.+++++
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            46899999988643 221  2322   345556554444555444443 344444443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.96  E-value=0.11  Score=44.82  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ++||+|||| |-.|.++|..|.+.++ ..+.++|...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            589999999 9999999999999883 3788898864

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.90  E-value=0.46  Score=39.02  Aligned_cols=72  Identities=11%  Similarity=0.089  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH---HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEE
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG---VTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g---~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiV  113 (390)
                      ...||+++|-...|..+++.++..-+.  ++.+.-...  . ..   .+.+..+.. ...++.+   .|..+|+++||+|
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~ea~~~advi   76 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAES-GGSFELL---HDPVKAVKDADVI   76 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHH-TCEEEEE---SCHHHHTTTCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcc-cceEEEe---cCHHHHhhhccEE
Confidence            567999999955666677777776675  899998765  1 22   222222222 3566653   5788999999999


Q ss_pred             EEcC
Q 016424          114 IIPA  117 (390)
Q Consensus       114 Ii~a  117 (390)
                      ..+-
T Consensus        77 y~~~   80 (163)
T d1pvva2          77 YTDV   80 (163)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            8764

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=90.49  E-value=0.27  Score=40.41  Aligned_cols=77  Identities=19%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcc------------------cCCCeEEEEe
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHM------------------DTGAVVRGFL   98 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~------------------~~~~~v~~~~   98 (390)
                      |+||+|+|++|+||.+..--+.+.+---+++..=-+.    +..++.++.-.                  .....++.+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            4689999999999999888777776322444443332    33344443311                  0124566666


Q ss_pred             CCCChhhh--hCCCcEEEEcC
Q 016424           99 GQPQLENA--LTGMDLVIIPA  117 (390)
Q Consensus        99 ~t~dl~~a--l~dADiVIi~a  117 (390)
                      |.+++.+.  ..++|+|+.+.
T Consensus        81 g~~~l~~~~~~~~~D~vi~AI  101 (151)
T d1q0qa2          81 GQQAACDMAALEDVDQVMAAI  101 (151)
T ss_dssp             SHHHHHHHHTCTTCCEEEECC
T ss_pred             ChHHHHHHhcCCCCCEEEEec
Confidence            65455443  34789999963

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.34  E-value=0.14  Score=44.55  Aligned_cols=114  Identities=14%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCC--CeEEEEeCCCChhhhhC--CCcEEEE
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTG--AVVRGFLGQPQLENALT--GMDLVII  115 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~--dADiVIi  115 (390)
                      .++|.|+||+|++|..++..|+..+.  ++.++|+++. .....-..+....  ......  .....+.+.  .-|++|.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            46899999999999999999999887  8899998751 1000000000000  000000  001112222  3699999


Q ss_pred             cCCC-CC-CCC-CCH----HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424          116 PAGV-PR-KPG-MTR----DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (390)
Q Consensus       116 ~ag~-p~-k~g-~~r----~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t  158 (390)
                      .+|. +. .+- ...    ...+..|+.-...+++.+..+- ..+.|++++
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~is  128 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAG  128 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEc
Confidence            8874 22 221 221    2235566655555555555543 467777775

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.31  E-value=0.11  Score=44.49  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .||+|||| |-.|.+.|..|...+.-.++.+||..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            49999999 999999999887654444999999876

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.25  E-value=0.075  Score=45.09  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=27.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCC----CCcEEEEEeCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINP----LVSVLHLYDVV   76 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~----~~~eL~L~Di~   76 (390)
                      |||+|||| |-+|.+.|+.|++.+    ++.++.+++-.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            79999999 999999999998764    34567777643

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=90.24  E-value=1.3  Score=38.57  Aligned_cols=41  Identities=22%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             EEEE-cCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHh
Q 016424           44 VAIL-GAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADIS   86 (390)
Q Consensus        44 I~VI-Ga~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~   86 (390)
                      |+|| ||++++|..++..|+..+.  +|++.|.+.   ......++.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~l~   48 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLN   48 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCCHHHHHHHHHHHH
Confidence            5555 9989999999999999987  888888765   344455554

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.99  E-value=0.11  Score=45.01  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||.|+||+|++|..++..|++.+.  +|++.|+++
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~   36 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   36 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            899999999999999999999986  899999975

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.89  E-value=0.21  Score=38.41  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ...+.||+|||| |.+|.-+|..+...+.  ++.|++..+
T Consensus        19 ~~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          19 GEVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             SSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hhcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            345679999999 9999999999988876  899999876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.84  E-value=0.19  Score=39.10  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+.||+|||| |.+|.-+|..+...+.  ++.|++..+
T Consensus        20 ~~p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          20 KESKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCCCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            34689999999 9999999999987665  999999855

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.18  Score=39.08  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+.||+|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        19 ~~p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          19 ALPERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             hCCCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            44679999999 9999999999988876  999999976

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.59  E-value=0.77  Score=37.88  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChh---h--hhCCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE---N--ALTGMD  111 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~---~--al~dAD  111 (390)
                      .++...|+|+|+ |++|...+..++..+ ..+|+..|+++ ....+.++.--.   -+.....+...+   +  .=.++|
T Consensus        27 ~~~g~tVlI~G~-GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~GA~~---~in~~~~~~~~~~~~~~~~g~G~d  101 (176)
T d1d1ta2          27 VKPGSTCVVFGL-GGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAVGATE---CISPKDSTKPISEVLSEMTGNNVG  101 (176)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHHTSCCC
T ss_pred             CCCCCEEEEECC-CchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhcCCcE---EECccccchHHHHHHHHhccccce
Confidence            445568999999 999999998888777 35899999988 455666664211   010000011111   1  225899


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCC
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPV  161 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPv  161 (390)
                      +||...|.+.                  .....+....+ .+.+++++.|.
T Consensus       102 ~vi~~~g~~~------------------~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         102 YTFEVIGHLE------------------TMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             EEEECSCCHH------------------HHHHHHTTSCTTTCEEEECSCCC
T ss_pred             EEEEeCCchH------------------HHHHHHHHhhcCCeEEEEEEccc
Confidence            9999876441                  12233333444 58898887764

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.58  E-value=0.26  Score=41.55  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhc----cc-------CCCeEEEEeCCCChhhhhC
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISH----MD-------TGAVVRGFLGQPQLENALT  108 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~----~~-------~~~~v~~~~~t~dl~~al~  108 (390)
                      |.||+|.|- |.||..++..+.+++-+.-+.+-|.... .....-..+    ..       ....+..   ..++.+.+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV---AGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC---CCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec---CCchhhhhh
Confidence            569999998 9999999999998886665666777652 111111111    00       0112222   235678888


Q ss_pred             CCcEEEEcCCCC
Q 016424          109 GMDLVIIPAGVP  120 (390)
Q Consensus       109 dADiVIi~ag~p  120 (390)
                      ++|+||-+.|..
T Consensus        77 ~vDiViecTG~f   88 (178)
T d1b7go1          77 TSDIVVDTTPNG   88 (178)
T ss_dssp             HCSEEEECCSTT
T ss_pred             cCCEEEECCCCc
Confidence            999999987643

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.52  E-value=0.12  Score=44.52  Aligned_cols=102  Identities=19%  Similarity=0.275  Sum_probs=62.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEE---------------------eCC
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGF---------------------LGQ  100 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~---------------------~~t  100 (390)
                      +|.|||- |+.|..++-.+...++ --+++.+|.|.     .+|.......++..-                     ...
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA-----QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT-----GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH-----HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            7899999 9999999988887764 34888888875     233332211111110                     001


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      ..+.+.++++|.||+++|..-.-|       ..-+|++.++++..   . --.+-++|-|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake~---g-~lvvaivtlPF  126 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKEM---G-ILTVAVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHHc---C-CCEEEEEecch
Confidence            235678999999999997654322       34466766666553   2 12345556664

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.50  E-value=0.2  Score=41.43  Aligned_cols=98  Identities=17%  Similarity=0.213  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      .++..+|.|.||+|++|+.....++..+.  +++-.+.++ ....+.++.   . ..+-.+....+....-+++|+|+-+
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lG---a-~~~i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALG---A-EEAATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTT---C-SEEEEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCCCCEEEEEeccccchhhhhhhhccccc--ccccccccccccccccccc---c-ceeeehhhhhhhhhccccccccccc
Confidence            45667899999889999999988888886  677677655 233333332   1 1121111000112345789999987


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (390)
Q Consensus       117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv  161 (390)
                      .| +     +              +...+.-..|.+.++.+.+|.
T Consensus        99 ~G-~-----~--------------~~~~~~~l~~~G~~v~~G~~~  123 (171)
T d1iz0a2          99 RG-K-----E--------------VEESLGLLAHGGRLVYIGAAE  123 (171)
T ss_dssp             SC-T-----T--------------HHHHHTTEEEEEEEEEC----
T ss_pred             cc-h-----h--------------HHHHHHHHhcCCcEEEEeCCC
Confidence            75 1     1              122354556899998886553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.39  E-value=0.66  Score=39.09  Aligned_cols=113  Identities=12%  Similarity=0.098  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhh------CC
Q 016424           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TG  109 (390)
Q Consensus        37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al------~d  109 (390)
                      ..++...|.|+|| |.+|...+..++..+ ...++..|.++ ....+.++.     .........+++.+.+      .+
T Consensus        22 ~v~~G~tVlV~Ga-G~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          22 GVGPGSTVYVAGA-GPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECc-CHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhcc-----ccEEEeCCCcCHHHHHHHHhCCCC
Confidence            3566779999999 999988887777665 45899999987 333444432     2222211123443332      36


Q ss_pred             CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (390)
Q Consensus       110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN  159 (390)
                      +|++|-+.|.+........   ......-..+-..++-..|.+.+++++-
T Consensus        95 ~D~vid~vG~~~~~~~~~~---~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          95 VDCAVDAVGFEARGHGHEG---AKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEEEEECCCTTCBCSSTTG---GGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             cEEEEECccccccCCcccc---eeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            9999999886542211000   0000001122233333458998888864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.22  E-value=0.43  Score=38.97  Aligned_cols=100  Identities=18%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCCh-hhhhCCCcEEEE
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL-ENALTGMDLVII  115 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl-~~al~dADiVIi  115 (390)
                      .++..+|.|+|+ |++|...+..++..+.  +++.+|.++ ....+.++.-   ..-+. +....+. +......|+|+.
T Consensus        25 ~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lGa---~~~i~-~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMGA---DHYIA-TLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHTC---SEEEE-GGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccCC---cEEee-ccchHHHHHhhhcccceEEE
Confidence            556789999999 9999998888877775  788899987 3445555531   11111 1111122 233457899999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      +.|.+.....+                ..+.-..|.+.+++++-|
T Consensus        98 ~~~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          98 CASSLTDIDFN----------------IMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             CCSCSTTCCTT----------------TGGGGEEEEEEEEECCCC
T ss_pred             EecCCccchHH----------------HHHHHhhccceEEEeccc
Confidence            87654432211                123344588988888644

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.13  E-value=0.24  Score=38.78  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +..+|+|||| |.+|.-+|..|...+.  ++.|++..+
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            4569999999 9999999999998886  999999876

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.02  E-value=0.13  Score=44.75  Aligned_cols=33  Identities=18%  Similarity=0.401  Sum_probs=29.6

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .-|+|||| |-+|.++|+.|+..+.  +++++|.++
T Consensus         5 ~DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           5 YEAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            35999999 9999999999999886  899999865

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.97  E-value=0.27  Score=38.12  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ....||.|+|+ |+.|..++.....-++  +++.+|.++
T Consensus         9 ~~~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2           9 PAATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             TTCCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCCCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            34569999999 9999999998887777  999999876

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=88.84  E-value=0.34  Score=42.05  Aligned_cols=72  Identities=13%  Similarity=0.200  Sum_probs=41.5

Q ss_pred             CCCCCEEEEEcCCCCc----HHHHHHHHHhCCCCcEEE-EEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhC--
Q 016424           38 GAAGFKVAILGAAGGI----GQPLAMLMKINPLVSVLH-LYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT--  108 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~v----G~~~a~~l~~~~~~~eL~-L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--  108 (390)
                      .++++||+|||+ |+.    +......+.....-.+|+ ++|++..  ...+..+   . ....+.+   +|+++.++  
T Consensus        13 ~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~---~-~~~~~~~---~~~~~l~~~~   84 (237)
T d2nvwa1          13 SSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL---Q-LKHATGF---DSLESFAQYK   84 (237)
T ss_dssp             GGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT---T-CTTCEEE---SCHHHHHHCT
T ss_pred             CCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc---c-cccceee---cchhhccccc
Confidence            577899999999 764    344455565543222544 8999762  2222222   1 1234444   36666665  


Q ss_pred             CCcEEEEcC
Q 016424          109 GMDLVIIPA  117 (390)
Q Consensus       109 dADiVIi~a  117 (390)
                      +-|+|+++.
T Consensus        85 ~iD~V~i~t   93 (237)
T d2nvwa1          85 DIDMIVVSV   93 (237)
T ss_dssp             TCSEEEECS
T ss_pred             ccceeeccC
Confidence            567777764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.50  E-value=0.22  Score=43.12  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             CEE-EEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI-~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||| .|.||++++|..++..|+..+.  +|++.|+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            455 5569999999999999999987  899999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.15  Score=37.30  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +++|.|+|+ |..|.-++.....-++  +++.+|.+.
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            368999999 9999988877776666  999999876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.43  E-value=0.53  Score=39.11  Aligned_cols=91  Identities=25%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      .-..++++|+|= |.+|..+|..+...+.  .+..+++|+..++-.   +++ .-++.      .+++|++.+|+||.+.
T Consensus        20 ~laGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA---~md-Gf~v~------~~~~a~~~aDi~vTaT   86 (163)
T d1v8ba1          20 LISGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA---VME-GFNVV------TLDEIVDKGDFFITCT   86 (163)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH---HTT-TCEEC------CHHHHTTTCSEEEECC
T ss_pred             eecCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH---Hhc-CCccC------chhHccccCcEEEEcC
Confidence            344569999999 9999999999998776  899999998443322   112 12332      4679999999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t  158 (390)
                      |.+.--  +               .+.+.+.-.+|++.|++
T Consensus        87 Gn~~vI--~---------------~~h~~~MKdgaIl~N~G  110 (163)
T d1v8ba1          87 GNVDVI--K---------------LEHLLKMKNNAVVGNIG  110 (163)
T ss_dssp             SSSSSB--C---------------HHHHTTCCTTCEEEECS
T ss_pred             CCCccc--c---------------HHHHHHhhCCeEEEecc
Confidence            754311  1               13344455678888887

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.22  E-value=0.16  Score=41.90  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .||+|||| |-.|.+.|+.|.+.+. .+++++|..+
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            38999999 9999999999998874 3689999865

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.16  E-value=0.28  Score=38.93  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+..||+|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        33 ~~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          33 IADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             ccCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            34579999999 9999999999998876  999999875

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.07  E-value=0.27  Score=38.42  Aligned_cols=36  Identities=14%  Similarity=0.181  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+.|++|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        21 ~~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          21 EIPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            34679999999 9999999999988776  999999865

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.04  E-value=0.12  Score=43.94  Aligned_cols=37  Identities=14%  Similarity=0.147  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCC-----CcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~-----~~eL~L~Di~~   77 (390)
                      |+.||+|||| |--|.+.|+.|...++     .-++.+||..+
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            5679999999 9999999998877542     24799999876

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=87.94  E-value=0.63  Score=37.70  Aligned_cols=69  Identities=13%  Similarity=0.076  Sum_probs=41.7

Q ss_pred             CCEEEEEcCCCC--cHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa~G~--vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ..||++||=..+  |..+++.++..-+.  +++++=..+ ..-. .++.+. ....++.+   +|+++|+++||+|..+
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~-~~~~~~-~~~~~~~~---~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRAR-KEILDE-LNYPVKEV---ENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCC-HHHHTT-CCSCEEEE---SCGGGTGGGCSEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccc-hhhccc-CCCeEEEE---eCHHHHhhcCCeEEEe
Confidence            579999998333  67777777766664  444443333 1100 111111 23466654   5788999999988876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.73  E-value=0.52  Score=40.27  Aligned_cols=37  Identities=27%  Similarity=0.309  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .....||+|||| |-.|.+.|..|...++  ++.|+|...
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            345689999999 9999999999999987  899999876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.22  E-value=0.2  Score=39.30  Aligned_cols=37  Identities=14%  Similarity=-0.069  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ...+.|++|||| |.+|.-+|..+...+.  ++.|+..+.
T Consensus        17 ~~~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          17 PYCPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             SSCCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             ccCCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            345679999999 9999999999988775  788887664

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.02  E-value=2.2  Score=36.57  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=48.4

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhh-------
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENA-------  106 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~a-------  106 (390)
                      |+.|.|.||++++|..++..|+.. .-...|++.+.++  ++. ..++...  ..++..+... +|   .+++       
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~-~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKN--HSNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHHH--CTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHHHHhc--CCcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            567999999999999999877642 2234899999987  232 2343322  1344433321 12   1111       


Q ss_pred             --hCCCcEEEEcCCCCCC
Q 016424          107 --LTGMDLVIIPAGVPRK  122 (390)
Q Consensus       107 --l~dADiVIi~ag~p~k  122 (390)
                        ...-|++|..+|+...
T Consensus        79 ~~~~~iDiLvnNAg~~~~   96 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPK   96 (248)
T ss_dssp             HGGGCCSEEEECCCCCCC
T ss_pred             hhcCCcceEEeecccccc
Confidence              2347999999987443

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=86.95  E-value=0.76  Score=40.63  Aligned_cols=115  Identities=23%  Similarity=0.200  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~  119 (390)
                      +..||+|||-     .++...+...+.  ++..+|.+...+            ..   . .++.++.+..||+||+|+  
T Consensus       121 ~g~kV~vIG~-----~P~v~~l~~~~~--~~~VlE~~p~~g------------d~---p-~~~~~~lLp~aD~viiTG--  175 (251)
T d2h1qa1         121 KGKKVGVVGH-----FPHLESLLEPIC--DLSILEWSPEEG------------DY---P-LPASEFILPECDYVYITC--  175 (251)
T ss_dssp             TTSEEEEESC-----CTTHHHHHTTTS--EEEEEESSCCTT------------CE---E-GGGHHHHGGGCSEEEEET--
T ss_pred             CCCEEEEEec-----chhHHHHHhcCC--cEEEEeCCCCCC------------CC---C-chHHHHhhhcCCEEEEEe--
Confidence            4579999987     466666665554  899999875211            11   1 234468899999999998  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHH
Q 016424          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  199 (390)
Q Consensus       120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la  199 (390)
                                     ..++-.-.+.+-+.|+++..+++.=|...+.+.+    .++ |  -+-+=|+-..|..++.+.|+
T Consensus       176 ---------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~l----f~~-G--v~~lag~~v~d~~~~~~~i~  233 (251)
T d2h1qa1         176 ---------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPVL----FEH-G--LQELSGFMVKDNARAFRIVA  233 (251)
T ss_dssp             ---------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGG----GGT-T--CSEEEEEEESCHHHHHHHHT
T ss_pred             ---------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHHH----Hhc-C--CceEeEEEEeCHHHHHHHHH
Confidence                           3445555566667787775455555766666532    232 3  24444556788888887776


Q ss_pred             HH
Q 016424          200 EV  201 (390)
Q Consensus       200 ~~  201 (390)
                      +-
T Consensus       234 ~G  235 (251)
T d2h1qa1         234 GA  235 (251)
T ss_dssp             TS
T ss_pred             cC
Confidence            43

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.79  E-value=0.16  Score=44.52  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ||+|||| |-+|.++|..|...++  ++.++|...
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            7999999 9999999999999997  899999865

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.41  E-value=0.24  Score=43.79  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=29.1

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+|+|||| |-+|.+.|+.|+..+. .+|+|+|.+.
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            38999999 9999999999988773 3699999764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.33  E-value=3.5  Score=35.24  Aligned_cols=36  Identities=17%  Similarity=0.143  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCCC--CcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G--~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +.+++.|.||+|  ++|..++..|+..+.  +|+|.+.++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            346888999654  599999999999996  899999886

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.02  E-value=0.38  Score=36.85  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+.|++|||| |.+|.-+|..+...+.  ++.|++..+
T Consensus        19 ~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            44579999999 9999999999988776  899999865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.41  Score=37.34  Aligned_cols=35  Identities=20%  Similarity=0.084  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+.||+|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        21 ~pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          21 LPGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            3579999999 9999999999988876  899999975

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.93  E-value=1.2  Score=36.05  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCCh-hhh-----hCCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQL-ENA-----LTGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl-~~a-----l~dAD  111 (390)
                      ++...|.|+|+ |++|...+..++..+. ..++..|.++. ...+.++.     ....+ ..++|. ++.     =.+.|
T Consensus        31 ~~g~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~g-----a~~~i-~~~~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          31 YPGAYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLG-----ADHVV-DARRDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTT-----CSEEE-ETTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcc-----cceee-cCcccHHHHHHHhhCCCCce
Confidence            44568999998 9999998887776552 36888999862 23333332     11111 112222 111     13689


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeeccc
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  188 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~  188 (390)
                      +||.+.|.+.                  .+-..+.-..|.+.+++++.+.++-.+.. .++.+     ..++.|+..
T Consensus       103 ~vid~~g~~~------------------~~~~a~~~l~~~G~iv~~G~~~~~~~~~~-~l~~k-----~~~i~Gs~~  155 (172)
T d1h2ba2         103 VAMDFVGSQA------------------TVDYTPYLLGRMGRLIIVGYGGELRFPTI-RVISS-----EVSFEGSLV  155 (172)
T ss_dssp             EEEESSCCHH------------------HHHHGGGGEEEEEEEEECCCSSCCCCCHH-HHHHT-----TCEEEECCS
T ss_pred             EEEEecCcch------------------HHHHHHHHHhCCCEEEEEeCcccccCCHH-HHHhC-----CcEEEEEEe
Confidence            9999986431                  12223334468899988875543222221 22222     257888843

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.65  E-value=0.3  Score=41.68  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +.+.|.||++++|..++..|+..+.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3567779999999999999999886  899999876

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.45  E-value=0.35  Score=38.42  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.5

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPL   66 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~   66 (390)
                      |||+|.|++|.+|+.++..+...+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999999999999887776654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.26  E-value=4.5  Score=31.95  Aligned_cols=113  Identities=11%  Similarity=0.020  Sum_probs=66.6

Q ss_pred             CCEEEEEcCC---CCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424           41 GFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (390)
Q Consensus        41 ~~KI~VIGa~---G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a  117 (390)
                      ++.|+|||||   +..|..++..|...+.  +++++.....     ++.      -...+   .++.+--..-|+|++..
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~-----~i~------G~~~~---~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE-----EVL------GRKCY---PSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EET------TEECB---SSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc-----ccC------CCccc---ccccccCccceEEEEEe
Confidence            3489999996   4678888888888887  7888876530     111      12222   24433233678888874


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-cc-ccHHH
Q 016424          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM-LDVVR  193 (390)
Q Consensus       118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~-Lds~R  193 (390)
                                      +...+.++.+++.+.+++++++   +|-..- .-+.+.+++. |   -+++|= |. .+..|
T Consensus        83 ----------------p~~~~~~~~~e~~~~g~k~v~~---~~G~~~-ee~~~~a~~~-g---i~vig~~C~~v~~~r  136 (139)
T d2d59a1          83 ----------------KPKLTMEYVEQAIKKGAKVVWF---QYNTYN-REASKKADEA-G---LIIVANRCMMREHER  136 (139)
T ss_dssp             ----------------CHHHHHHHHHHHHHHTCSEEEE---CTTCCC-HHHHHHHHHT-T---CEEEESCCHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCEEEE---eccccC-HHHHHHHHHC-C---CEEEcCCcChhhhhh
Confidence                            1345666666677777776554   333222 2223444544 3   378886 74 34443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.75  E-value=0.57  Score=35.81  Aligned_cols=36  Identities=8%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+..+|+|||+ |.+|.-+|..+...+.  ++.+++..+
T Consensus        20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            34579999999 9999999999987765  888998865

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.73  E-value=1.3  Score=36.06  Aligned_cols=78  Identities=17%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhh-----hhCCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN-----ALTGMD  111 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~-----al~dAD  111 (390)
                      -++...|.|+|| |++|...+..++..+ ..+++..|+++ ....+.++....   .+.......+..+     .-.++|
T Consensus        26 vk~GdtVlV~Ga-GG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          26 VTQGSTCAVFGL-GGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGATE---CVNPQDYKKPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCCEEEEECC-CCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHhCCee---EEecCCchhHHHHHHHHHhcCCCC
Confidence            455678999999 999999988887765 35899999987 333444443111   1110000111111     114799


Q ss_pred             EEEEcCCCC
Q 016424          112 LVIIPAGVP  120 (390)
Q Consensus       112 iVIi~ag~p  120 (390)
                      +||.+.|.+
T Consensus       101 ~vid~~G~~  109 (176)
T d2jhfa2         101 FSFEVIGRL  109 (176)
T ss_dssp             EEEECSCCH
T ss_pred             EEEecCCch
Confidence            999998754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.72  E-value=0.61  Score=38.83  Aligned_cols=75  Identities=13%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHh----cccC-------CCeEEEEeCCCChhhhhC
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADIS----HMDT-------GAVVRGFLGQPQLENALT  108 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~----~~~~-------~~~v~~~~~t~dl~~al~  108 (390)
                      +||+|.|- |.||..++..+..++-+.-+.+-|+....  ..+....    +...       ...+..   ..++.+.+.
T Consensus         3 irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   78 (172)
T d2czca2           3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEV---AGTLNDLLE   78 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCC---SCBHHHHHT
T ss_pred             EEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccc---cchhhhhhc
Confidence            69999999 99999999988888766666777876521  1111110    1000       001111   235677789


Q ss_pred             CCcEEEEcCCCC
Q 016424          109 GMDLVIIPAGVP  120 (390)
Q Consensus       109 dADiVIi~ag~p  120 (390)
                      ++|+||-+.|.-
T Consensus        79 ~vDvViEcTG~f   90 (172)
T d2czca2          79 KVDIIVDATPGG   90 (172)
T ss_dssp             TCSEEEECCSTT
T ss_pred             cCCEEEECCCCC
Confidence            999999987644

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.71  E-value=1.2  Score=37.93  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .-+..+|+|-|- |+||+.++..|...+.  +|+.+|++.
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            356679999999 9999999999999885  899999986

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.60  E-value=0.47  Score=36.77  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+|+|||| |.+|.-+|..|...+.  ++.|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            59999999 9999999999998876  899999876

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=84.45  E-value=0.45  Score=39.06  Aligned_cols=38  Identities=24%  Similarity=0.408  Sum_probs=26.0

Q ss_pred             CCCCEEEEEcCCCCcHHHHH-HHHHhCCCCcEEEEEeCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLA-MLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a-~~l~~~~~~~eL~L~Di~~   77 (390)
                      .+++||+|||+ |++|..+. ..+...+.+.-..+.|++.
T Consensus         2 ~kkirvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~   40 (157)
T d1nvmb1           2 NQKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDA   40 (157)
T ss_dssp             CSCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred             CCCcEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecch
Confidence            35689999997 99998754 5555566543334558765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.84  E-value=0.75  Score=35.43  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ...+.||+|||| |.+|.-+|..+...+.  ++.++...+
T Consensus        19 ~~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          19 QNVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             SSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             ccCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            445689999999 9999999999998776  888888665

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.75  E-value=0.21  Score=39.52  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ..+|+|+|| |..|..++..+...+-..=+.++|-+.
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            349999999 999999887665554456688999876

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=83.07  E-value=0.9  Score=36.84  Aligned_cols=62  Identities=13%  Similarity=0.183  Sum_probs=42.4

Q ss_pred             CCEEEEEcC--CCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424           41 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (390)
Q Consensus        41 ~~KI~VIGa--~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~  116 (390)
                      ..||++||-  .+.|..+++.++..-+.  ++++....+.       ..-  ...+..+   .|+++++++||+|..+
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~~~~---~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTFGTY---VSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccceeEE---EechhccccCceeeee
Confidence            579999997  34588888888877665  7777776541       100  1233443   3678999999999876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.83  E-value=0.44  Score=38.85  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      +..-|+|||| |-.|.+.|..|+..+.  ++.++|.++
T Consensus         4 ~~yDviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           4 TDYDVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             CBCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            3456899999 9999999999999987  899999976

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=82.66  E-value=2.9  Score=35.65  Aligned_cols=138  Identities=14%  Similarity=0.203  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCCCCcHHHHH-----HHHHhCCCCcEEEEEeCCc-hHHHHHHHhc---ccCCCeEEEEeCCCChhh----
Q 016424           39 AAGFKVAILGAAGGIGQPLA-----MLMKINPLVSVLHLYDVVN-TPGVTADISH---MDTGAVVRGFLGQPQLEN----  105 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a-----~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~---~~~~~~v~~~~~t~dl~~----  105 (390)
                      +++.-|.++|. -|+|-|.+     ..+..++.  .+.|+-.|. ..|-..-|..   .. ...+.......|+.+    
T Consensus        10 k~p~vi~lvGp-tGvGKTTTiAKLA~~~~~~g~--kV~lit~Dt~R~ga~eQL~~~a~~l-~v~~~~~~~~~~~~~~~~~   85 (211)
T d1j8yf2          10 KIPYVIMLVGV-QGTGKATTAGKLAYFYKKKGF--KVGLVGADVYRPAALEQLQQLGQQI-GVPVYGEPGEKDVVGIAKR   85 (211)
T ss_dssp             SSSEEEEEECS-CCC----HHHHHHHHHHHTTC--CEEEEECCCSSHHHHHHHHHHHHHH-TCCEECCTTCCCHHHHHHH
T ss_pred             CCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCC--ceEEEEeeccccchhHHHHHhcccc-CcceeecccchhhhHHHHH
Confidence            44556788899 77888754     24444554  677777765 3333333332   22 233332211234321    


Q ss_pred             -----hhCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424          106 -----ALTGMDLVII-PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (390)
Q Consensus       106 -----al~dADiVIi-~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p  179 (390)
                           ...++|+|+| |+|.....  +.       ...+.++.+-.....|+-.++++.-..+.-..  .++..++...+
T Consensus        86 a~~~~~~~~~d~IlIDTaGr~~~~--~~-------~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~--~~~~~~~~~~~  154 (211)
T d1j8yf2          86 GVEKFLSEKMEIIIVDTAGRHGYG--EE-------AALLEEMKNIYEAIKPDEVTLVIDASIGQKAY--DLASKFNQASK  154 (211)
T ss_dssp             HHHHHHHTTCSEEEEECCCSCCTT--CH-------HHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH--HHHHHHHHHCT
T ss_pred             HHHHhhccCCceEEEecCCcCccc--hh-------hHHHHHHHHHHhhcCCceEEEEEecccCcchH--HHHhhhhcccC
Confidence                 2578999999 77753211  11       11233444444455687666666544432221  12223333344


Q ss_pred             CCceeecccccHH
Q 016424          180 PKKLLGVTMLDVV  192 (390)
Q Consensus       180 ~~kviG~t~Lds~  192 (390)
                      ...+| +|-||..
T Consensus       155 ~~~lI-~TKlDet  166 (211)
T d1j8yf2         155 IGTII-ITKMDGT  166 (211)
T ss_dssp             TEEEE-EECTTSC
T ss_pred             cceEE-EecccCC
Confidence            45555 5777763

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.10  E-value=1.7  Score=35.16  Aligned_cols=96  Identities=15%  Similarity=0.020  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhh------CCCc
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL------TGMD  111 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al------~dAD  111 (390)
                      ++..+|.|+||+|++|+.....++..+.  +++..|.++. ...+.++.   . ..+-. ..+.|+.+.+      ++.|
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a-~~vi~-~~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---A-WQVIN-YREEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---C-SEEEE-TTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---C-eEEEE-CCCCCHHHHHHHHhCCCCeE
Confidence            4456999999978899999988888776  8888988872 33444442   1 12211 1234555544      4578


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      +|+-+.|-+                   .+...+...+|++.++++..+
T Consensus       100 ~v~d~~g~~-------------------~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         100 VVYDSVGRD-------------------TWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             EEEECSCGG-------------------GHHHHHHTEEEEEEEEECCCT
T ss_pred             EEEeCccHH-------------------HHHHHHHHHhcCCeeeecccc
Confidence            888887522                   111223344688888777543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=82.09  E-value=5  Score=33.88  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=59.3

Q ss_pred             EEEEEcCCCCcHHHHHH-----HHHhCCCCcEEEEEeCCc-hHHHHHHH---hcccCCCeEEEEeCCCChhh--------
Q 016424           43 KVAILGAAGGIGQPLAM-----LMKINPLVSVLHLYDVVN-TPGVTADI---SHMDTGAVVRGFLGQPQLEN--------  105 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~-----~l~~~~~~~eL~L~Di~~-~~g~a~DL---~~~~~~~~v~~~~~t~dl~~--------  105 (390)
                      -|.++|- .|+|-|.+.     .+..++.  .+.|+..|. ..|-..-|   .+.. ...+.......++.+        
T Consensus        12 vi~lvGp-~GvGKTTTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~l-~v~~~~~~~~~~~~~~~~~~~~~   87 (207)
T d1ls1a2          12 LWFLVGL-QGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDGESPESIRRRVEEK   87 (207)
T ss_dssp             EEEEECC-TTTTHHHHHHHHHHHHHHTTC--CEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCC--cEEEEecccccchHHHHHHHHHHhc-CCccccccccchhhHHHHHHHHH
Confidence            3577899 889987642     3344443  688888886 33322222   2222 233443222334432        


Q ss_pred             -hhCCCcEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCccc
Q 016424          106 -ALTGMDLVII-PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNST  164 (390)
Q Consensus       106 -al~dADiVIi-~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~  164 (390)
                       .+.++|+|++ |+|...           .+...+.++.+-.+...|+-.+++.  +.+-+.+
T Consensus        88 ~~~~~~d~vlIDTaGr~~-----------~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~  139 (207)
T d1ls1a2          88 ARLEARDLILVDTAGRLQ-----------IDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL  139 (207)
T ss_dssp             HHHHTCCEEEEECCCCSS-----------CCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH
T ss_pred             HhhccCcceeecccccch-----------hhhhhHHHHHHHHhhcCCceEEEEeccccchhHH
Confidence             3689999999 777543           2234455665555556787655554  3454444

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.56  E-value=0.4  Score=42.88  Aligned_cols=40  Identities=20%  Similarity=0.152  Sum_probs=32.7

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHH
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA   83 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~   83 (390)
                      |.+|+|||| |-.|.++|..|++.+.  ++.++|.++ .-|.+.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSSSSGGGC
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCCcccceE
Confidence            568999999 9999999999988775  899999876 334443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.23  E-value=1.8  Score=35.05  Aligned_cols=97  Identities=15%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh------CCCcE
Q 016424           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDL  112 (390)
Q Consensus        39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al------~dADi  112 (390)
                      ++..+|.|.||+|++|+..+..++..+.  +++..+.++.+  ...+...  .+...+...+.|+.+.+      ++.|+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~--~~~l~~~--Ga~~vi~~~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAK--REMLSRL--GVEYVGDSRSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHH--HHHHHTT--CCSEEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccc--cceeeeccccc--ccccccc--cccccccCCccCHHHHHHHHhCCCCEEE
Confidence            4457899999989999999888877775  66655554311  1112222  12222212234565655      57999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (390)
Q Consensus       113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP  160 (390)
                      |+-+.|-+                .+.+.   +.-..|++.++.+++.
T Consensus        98 v~d~~g~~----------------~~~~~---~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_          98 VLNSLAGE----------------AIQRG---VQILAPGGRFIELGKK  126 (183)
T ss_dssp             EEECCCTH----------------HHHHH---HHTEEEEEEEEECSCG
T ss_pred             EEecccch----------------HHHHH---HHHhcCCCEEEEEccC
Confidence            99987511                11111   2223588999988643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=81.18  E-value=0.52  Score=40.89  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      -|+|||| |-+|.+.|+.|+..+.  +++|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            5899999 9999999999999887  899999754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=81.17  E-value=1.4  Score=34.25  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (390)
Q Consensus        38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~   77 (390)
                      ...+.+++|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        23 ~~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          23 KEVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            455789999999 9999999998887776  899998765

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=80.93  E-value=0.64  Score=38.65  Aligned_cols=75  Identities=17%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH--HHH--HHhcc-cC--------CCeEEEEeCCCChhhhh
Q 016424           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTA--DISHM-DT--------GAVVRGFLGQPQLENAL  107 (390)
Q Consensus        41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g--~a~--DL~~~-~~--------~~~v~~~~~t~dl~~al  107 (390)
                      |.||+|-|- |.||..+...+..++.+.-+.+-|+.....  ...  |..+. ..        ...+..   ..+..+++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v---~g~~~~~~   76 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEV---AGTVDDML   76 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCC---CEEHHHHH
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCccc---CCChhHhh
Confidence            569999999 999999999888877555555667654221  111  11110 00        011221   12456778


Q ss_pred             CCCcEEEEcCCC
Q 016424          108 TGMDLVIIPAGV  119 (390)
Q Consensus       108 ~dADiVIi~ag~  119 (390)
                      .++|+||-+.|.
T Consensus        77 ~~vDvViEcTG~   88 (171)
T d1cf2o1          77 DEADIVIDCTPE   88 (171)
T ss_dssp             HTCSEEEECCST
T ss_pred             cCCCEEEEccCC
Confidence            899999998764