Citrus Sinensis ID: 016442
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | 2.2.26 [Sep-21-2011] | |||||||
| Q66GI9 | 533 | Probable anion transporte | yes | no | 0.974 | 0.711 | 0.776 | 1e-174 | |
| Q8W0H5 | 519 | Probable anion transporte | no | no | 0.966 | 0.724 | 0.708 | 1e-153 | |
| Q7XJR2 | 512 | Probable anion transporte | no | no | 0.940 | 0.714 | 0.544 | 1e-118 | |
| Q53WP9 | 535 | Probable anion transporte | no | no | 0.951 | 0.691 | 0.514 | 1e-109 | |
| Q652N5 | 591 | Probable anion transporte | no | no | 0.938 | 0.617 | 0.406 | 2e-78 | |
| Q8GX78 | 541 | Probable anion transporte | no | no | 0.938 | 0.674 | 0.398 | 3e-78 | |
| Q9SDI4 | 529 | Probable anion transporte | no | no | 0.938 | 0.689 | 0.409 | 9e-75 | |
| O82390 | 512 | Sodium-dependent phosphat | no | no | 0.938 | 0.712 | 0.406 | 3e-74 | |
| Q9MZD1 | 495 | Sialin OS=Ovis aries GN=S | N/A | no | 0.940 | 0.739 | 0.324 | 2e-49 | |
| Q05B21 | 576 | Vesicular glutamate trans | yes | no | 0.951 | 0.642 | 0.32 | 1e-47 |
| >sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 610 bits (1572), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/380 (77%), Positives = 341/380 (89%), Gaps = 1/380 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG
Sbjct: 155 SSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVG 214
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFP TER+RAV IAM GF GN +GL+LSPILMSQ GI+GPFVI
Sbjct: 215 VAEGVALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVI 274
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLW+LVWLSATSS PDRHPQI+K ELEYI ++K++ M NK + IPPF RL
Sbjct: 275 FGLSGFLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRL 333
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+
Sbjct: 334 LSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIA 393
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SD+LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH
Sbjct: 394 GFWSDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSH 453
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
GFL+NLQEIAP+YSGVLHG+ TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY L
Sbjct: 454 LGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLL 513
Query: 369 SALFYIIFSTGERVNFDEAA 388
SALFY I++TGERV+FD A
Sbjct: 514 SALFYNIYATGERVDFDTTA 533
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Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/377 (70%), Positives = 322/377 (85%), Gaps = 1/377 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYLVSPI GG LVDYYGGK +MA+GVALWSLATFL+PWAA SL L+ R ++G
Sbjct: 141 SSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLG 200
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP+MNNMV RWFP+TER+ AV IAM GF GN IGL+LSPI+MS+AGIFGPFVI
Sbjct: 201 MAEGVALPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVI 260
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGL GFLWVLVW+SA S TP + QIS +EL+YI R QK + + + +PPF +L
Sbjct: 261 FGLFGFLWVLVWISAISGTPGENAQISAHELDYITR-GQKLVKTQSGGERLRKVPPFSKL 319
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK PTW++I ANAMHSWG+FVILSWMP+YF +YH++LR+A+WFSA+PW +MA GY+
Sbjct: 320 LSKWPTWALISANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVA 379
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G++SD LIQ GTS+TLTRKI+Q+IGF+ PG+AL+GL AAKSPV+ASAWLT+A+G+KSF H
Sbjct: 380 GVVSDRLIQNGTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGH 439
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SGFLVNLQEIAPQY+GVLHG+SNTAGTFAAILGTVGAGFFV+ +GSF+GFL+LTSLLYF
Sbjct: 440 SGFLVNLQEIAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFS 499
Query: 369 SALFYIIFSTGERVNFD 385
S LF+ IF+TGERV+FD
Sbjct: 500 STLFWDIFATGERVDFD 516
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/378 (54%), Positives = 280/378 (74%), Gaps = 12/378 (3%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGY+ S + GG LVD YGGK ++AWGVALWSLAT LTPWAA S LALL +RA G
Sbjct: 142 SSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFG 201
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
LAEGVA+P+M +++RWFP ERA AV I+M GF GN +GL+L+P+++S GI GPF++
Sbjct: 202 LAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFIL 261
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP---- 184
F G LWV W S ++ P P I++ EL I + KP+ +P+T+ P
Sbjct: 262 FASLGLLWVSTWSSGVTNNPQDSPFITRSELRLI--QAGKPV------QPSTISPKPNPS 313
Query: 185 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT 244
R LLSK+PTW+II AN ++WG+FV+LSWMP+YF V++++L+QA+WFSA+PW+ MA +
Sbjct: 314 LRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAIS 373
Query: 245 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMK 304
GY G SD LI+ G SVT RKI+QSIGF+ PG++L+ L AKSP A+ ++T+A+ +
Sbjct: 374 GYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLS 433
Query: 305 SFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL 364
SFS +GFL+N+Q+IAPQY+G LHGISN AGT AAI+ T+G G+FV+ +GSFQ FL +T+
Sbjct: 434 SFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAF 493
Query: 365 LYFLSALFYIIFSTGERV 382
LYF + +F+++F+TGERV
Sbjct: 494 LYFATTVFWLLFATGERV 511
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Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/377 (51%), Positives = 267/377 (70%), Gaps = 7/377 (1%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGY+ S + GG L D YGGK +MA ALWSLATFLTPWAA S + LLA+RA+ G
Sbjct: 166 SSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFG 225
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
LAEGVA P M+ + +WFP ERA AV I+MGGF GN I + +PI+MS G+ G F
Sbjct: 226 LAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAF 285
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
F G+LW+ VWL S P ISK EL+ IL + + G+K P R +
Sbjct: 286 FASLGYLWLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSK------FPSLREI 339
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK+ W+IIVAN +++WG+FV+LSWMP+YF VY+++L+QA+WFSA+PW+VMA +GY+
Sbjct: 340 LSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVA 399
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G +D LI+ G SV L RKI+QSIGFI PG++L+ L A++P +A+ +T+A+ + SFS
Sbjct: 400 GASADFLIKSGFSVALVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQ 459
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
+G+ N+Q+IAP+Y+G LHG++N GT AAI+ T+G G+FV+ +GSFQ FL LT++LYF
Sbjct: 460 AGYFCNVQDIAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFS 519
Query: 369 SALFYIIFSTGERVNFD 385
+ +FY ++TG+ + FD
Sbjct: 520 ATVFYNTYATGDLI-FD 535
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 228/374 (60%), Gaps = 9/374 (2%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSF WGYL++ I GG D +GGK+++ +GV WS+AT LTP AA L LL MRA +G
Sbjct: 225 SSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMG 284
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+ EGVA+PAMNN++++W P +ER+R++A+ G G+ GL SP+L+S+ G F
Sbjct: 285 IGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYA 344
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FG G +W +W S+P P++SK E YIL G+ K P++ +
Sbjct: 345 FGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILG--------GSTLKEPVTSIPWKLI 396
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK P W++IV++ H+WG F++L+WMP Y+N V +L ++ +PW MA +G
Sbjct: 397 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIG 456
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G ++D L+ RG S+T RKI+QSIGF+ P + L L+ ++P MA + + G +FS
Sbjct: 457 GWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQ 516
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SG N Q+I P+Y+GVL G+SNTAG A + GT G+ ++ GS+ + +LY +
Sbjct: 517 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-KGSWDSVFQVAVVLYIV 575
Query: 369 SALFYIIFSTGERV 382
+ + +FSTGE+V
Sbjct: 576 GTVVWNVFSTGEKV 589
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/374 (39%), Positives = 230/374 (61%), Gaps = 9/374 (2%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSF WGYL++ I GG D +GGK+++ +GV WS AT +TP AA L LL +RA +G
Sbjct: 175 SSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMG 234
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+ EGVA+PAMNNM+++W P +ER+R++A+ G G+ GL SP+L+++ G F
Sbjct: 235 IGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYS 294
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FG G +W L+WL S+P P +S+ E++K +L G+K + + P++ +
Sbjct: 295 FGSLGSIWFLLWLKFAYSSPKDDPDLSE--------EEKKVILGGSKPREPVTVIPWKLI 346
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK P W++I+++ H+WG F++L+WMP Y+N V +L ++ +PW MA +G
Sbjct: 347 LSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIG 406
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G ++D L+ RG S+T RKI+QSIGF+ P L L+ K+P MA + + G +FS
Sbjct: 407 GWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQ 466
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SG N Q+I P+Y+GVL G+SNTAG A + GT G+ ++ GS+ + LY +
Sbjct: 467 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVALYLI 525
Query: 369 SALFYIIFSTGERV 382
L + +F+TGE++
Sbjct: 526 GTLVWNLFATGEKI 539
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 153/374 (40%), Positives = 221/374 (59%), Gaps = 9/374 (2%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSF WGYL++ IAGG D GGK ++ +GV WS+AT LTP+AA L LL RA +G
Sbjct: 163 SSFFWGYLLTQIAGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMG 222
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+ EGVA+PAMNN++++W P +ER+R++A+ G G+ GL SP+L+ G F
Sbjct: 223 VGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYS 282
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FG G W W S S+P P IS E + I + +P IP + +
Sbjct: 283 FGSLGVFWFSTWASKAYSSPLEDPGISAEEKKLITSQT-------TGGEPVKEIP-WGLI 334
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK P W++IV++ H+WG F++L+WMP Y+N V +L ++ F +PW MA + G
Sbjct: 335 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFG 394
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G ++D L+ RG SVT RKI+QSIGF+ P L L+ SP MA + + G +FS
Sbjct: 395 GWIADTLVSRGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQ 454
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SG N Q+I P+Y+GVL G+SNTAG A + GT G+ ++ GS+ ++ +LY +
Sbjct: 455 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVVLYLV 513
Query: 369 SALFYIIFSTGERV 382
L + +FSTGE++
Sbjct: 514 GTLVWNLFSTGEKI 527
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/374 (40%), Positives = 220/374 (58%), Gaps = 9/374 (2%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSF WGYL++ IAGG D GGK ++ +GV WS+AT LTP AA L LL +RA +G
Sbjct: 146 SSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMG 205
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+ EGVA+PAMNN++++W P ER+R++A+ G G+ GL SP L+ Q G F
Sbjct: 206 VGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYS 265
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FG G +W+ +WL+ S+P P + L E++K + K P+R +
Sbjct: 266 FGSLGTVWLTLWLTKAESSPLEDPTL--------LPEERKLIADNCASKEPVKSIPWRLI 317
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK P W++I + H+WG F++L+WMP Y++ V +L ++ S PW MA + G
Sbjct: 318 LSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAG 377
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G ++D L+ RG SVT RKI+Q+IGF+ P L L SP MA + + G +FS
Sbjct: 378 GWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQ 437
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SG N Q+IAP+YSGVL G+SNTAG A +LGT G ++ GS+ ++ LY +
Sbjct: 438 SGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQH-GSWDDVFTISVGLYLV 496
Query: 369 SALFYIIFSTGERV 382
+ + +FSTGE++
Sbjct: 497 GTVIWNLFSTGEKI 510
|
Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 201/379 (53%), Gaps = 13/379 (3%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+++ I GG + GGK+++ +G+ ++ T TP AAD + AL+A+RA+ GL
Sbjct: 114 SFFYGYIITQIPGGYVASRSGGKLLLGFGIFATAIFTLFTPLAADFGVGALVALRALEGL 173
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PAM+ M + W P ER++ ++I+ G G + L LS ++ F F
Sbjct: 174 GEGVTYPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICYYMNWTYVFYFF 233
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
G+ G +W ++W+ S TP+ H I+ YE EYIL + L + K IP +L
Sbjct: 234 GIVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQKSVPWIP----ML 286
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+P W+I+VA+ ++W F+ +L+ +P Y V ++++ + SAVP+ L G
Sbjct: 287 KSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCWLCMILSG 346
Query: 250 LLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSF 306
+D L R TL R++ IG I P I L+ G +A A+LT++ + F
Sbjct: 347 QAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LAVAFLTISTTLGGF 405
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFV--ELVGSFQGFLLLTSL 364
SGF +N +IAP Y+G+L GI+NT T ++G + A +G +Q + +
Sbjct: 406 CSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIARSLTPENTIGEWQTVFCIAAA 465
Query: 365 LYFLSALFYIIFSTGERVN 383
+ A+F+ +F+ GE N
Sbjct: 466 INVFGAIFFTLFAKGEVQN 484
|
Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties. Ovis aries (taxid: 9940) |
| >sp|Q05B21|VGLU1_XENTR Vesicular glutamate transporter 1 OS=Xenopus tropicalis GN=slc17a7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 197/375 (52%), Gaps = 5/375 (1%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF WGY+V+ I GG + + + + + S L P AA ++ +R + GL
Sbjct: 122 SFFWGYIVTQIPGGYICQKFAANRVFGFAIVATSTLNMLIPSAARVHFACVICVRILQGL 181
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PA + + ++W P ER+R A G +G + + L+ +L+ +G F ++
Sbjct: 182 VEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQYSGWSSVFYVY 241
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
G G +W + W+ + +P HP IS+ E +YI E+ G + A P+R+
Sbjct: 242 GSFGIMWYMFWILVSYESPAIHPTISEEEKKYI--EESIGESTGLMNPMAKFKAPWRKFF 299
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+ MP ++IIVAN SW F+++L P YF V+ ++ + SA+P VM +GG
Sbjct: 300 TSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLLSALPHLVMTIIVPIGG 359
Query: 250 LLSDML-IQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
++D L +R S T RK++ GF L+ + + S +A ++L LA+G F+
Sbjct: 360 QIADFLRTKRIMSTTNVRKMMNCGGFGMEATLLLVVGYSHSRGVAISFLVLAVGFSGFAI 419
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILG--TVGAGFFVELVGSFQGFLLLTSLLY 366
SGF VN +IAP+Y+ +L GISN GT + ++ VGA + +Q L+ SL++
Sbjct: 420 SGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMTKHKTREEWQYVFLIASLVH 479
Query: 367 FLSALFYIIFSTGER 381
+ LFY IF++GE+
Sbjct: 480 YGGVLFYGIFASGEK 494
|
Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. Xenopus tropicalis (taxid: 8364) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | ||||||
| 225434688 | 525 | PREDICTED: probable anion transporter 4, | 0.969 | 0.718 | 0.806 | 1e-176 | |
| 297745951 | 415 | unnamed protein product [Vitis vinifera] | 0.969 | 0.908 | 0.806 | 1e-175 | |
| 449470650 | 530 | PREDICTED: probable anion transporter 4, | 0.969 | 0.711 | 0.822 | 1e-174 | |
| 224054570 | 550 | predicted protein [Populus trichocarpa] | 0.971 | 0.687 | 0.825 | 1e-173 | |
| 255558820 | 554 | Sialin, putative [Ricinus communis] gi|2 | 0.961 | 0.675 | 0.794 | 1e-173 | |
| 449455040 | 530 | PREDICTED: probable anion transporter 4, | 0.969 | 0.711 | 0.820 | 1e-172 | |
| 297819304 | 533 | hypothetical protein ARALYDRAFT_485075 [ | 0.974 | 0.711 | 0.773 | 1e-172 | |
| 17064732 | 533 | putative protein [Arabidopsis thaliana] | 0.974 | 0.711 | 0.776 | 1e-172 | |
| 79314547 | 534 | putative anion transporter 4 [Arabidopsi | 0.974 | 0.709 | 0.776 | 1e-172 | |
| 22331630 | 533 | putative anion transporter 4 [Arabidopsi | 0.974 | 0.711 | 0.776 | 1e-172 |
| >gi|225434688|ref|XP_002279865.1| PREDICTED: probable anion transporter 4, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 304/377 (80%), Positives = 341/377 (90%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGG LVDYYGGK++MAWGVALWSLATFLTPWAA+TS+ ALL MRA++G
Sbjct: 149 SSFLWGYLISPIAGGALVDYYGGKVVMAWGVALWSLATFLTPWAAETSIWALLTMRALLG 208
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFPQTER+RAV IAM GF G+AIGL L+PILMSQ GIFGPFVI
Sbjct: 209 VAEGVALPCMNNMVARWFPQTERSRAVGIAMAGFQLGSAIGLTLAPILMSQGGIFGPFVI 268
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLWVLVW+SATSSTPD++PQISK EL+YIL +K + N+ K VIPPFRRL
Sbjct: 269 FGLSGFLWVLVWISATSSTPDQNPQISKSELDYILNNGRKSFRVENQAKRTKVIPPFRRL 328
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK PTWS+IVANAMHSWGFFVILSWMPIYFN ++ +DL QA+WFSAVPWS+MA GY G
Sbjct: 329 LSKPPTWSLIVANAMHSWGFFVILSWMPIYFNTIHRVDLTQAAWFSAVPWSMMAIVGYFG 388
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SD+LIQRG SVT+TRKI+QSIGF+ PGIALIGLTAAKSP++ASAWLTLA+G+KSFSH
Sbjct: 389 GAWSDILIQRGLSVTMTRKIMQSIGFVGPGIALIGLTAAKSPLIASAWLTLAVGLKSFSH 448
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SGFLVNLQEIAPQYSGVLHG+SNTAGTFAAI+GT+GAGFFVELVGSFQGFLLLTS LY L
Sbjct: 449 SGFLVNLQEIAPQYSGVLHGLSNTAGTFAAIVGTIGAGFFVELVGSFQGFLLLTSFLYIL 508
Query: 369 SALFYIIFSTGERVNFD 385
SALF+ IF+TGERVNFD
Sbjct: 509 SALFFDIFATGERVNFD 525
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745951|emb|CBI16007.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/377 (80%), Positives = 341/377 (90%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGG LVDYYGGK++MAWGVALWSLATFLTPWAA+TS+ ALL MRA++G
Sbjct: 39 SSFLWGYLISPIAGGALVDYYGGKVVMAWGVALWSLATFLTPWAAETSIWALLTMRALLG 98
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFPQTER+RAV IAM GF G+AIGL L+PILMSQ GIFGPFVI
Sbjct: 99 VAEGVALPCMNNMVARWFPQTERSRAVGIAMAGFQLGSAIGLTLAPILMSQGGIFGPFVI 158
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLWVLVW+SATSSTPD++PQISK EL+YIL +K + N+ K VIPPFRRL
Sbjct: 159 FGLSGFLWVLVWISATSSTPDQNPQISKSELDYILNNGRKSFRVENQAKRTKVIPPFRRL 218
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSK PTWS+IVANAMHSWGFFVILSWMPIYFN ++ +DL QA+WFSAVPWS+MA GY G
Sbjct: 219 LSKPPTWSLIVANAMHSWGFFVILSWMPIYFNTIHRVDLTQAAWFSAVPWSMMAIVGYFG 278
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SD+LIQRG SVT+TRKI+QSIGF+ PGIALIGLTAAKSP++ASAWLTLA+G+KSFSH
Sbjct: 279 GAWSDILIQRGLSVTMTRKIMQSIGFVGPGIALIGLTAAKSPLIASAWLTLAVGLKSFSH 338
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SGFLVNLQEIAPQYSGVLHG+SNTAGTFAAI+GT+GAGFFVELVGSFQGFLLLTS LY L
Sbjct: 339 SGFLVNLQEIAPQYSGVLHGLSNTAGTFAAIVGTIGAGFFVELVGSFQGFLLLTSFLYIL 398
Query: 369 SALFYIIFSTGERVNFD 385
SALF+ IF+TGERVNFD
Sbjct: 399 SALFFDIFATGERVNFD 415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470650|ref|XP_004153029.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449474939|ref|XP_004154326.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] gi|449510734|ref|XP_004163745.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust.
Identities = 311/378 (82%), Positives = 346/378 (91%), Gaps = 1/378 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGY VSPIAGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G
Sbjct: 152 SSFLWGYFVSPIAGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLG 211
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFP TERARAV IAM GF G+AIGLVLSPILMSQAGIFGPFVI
Sbjct: 212 IAEGVALPCMNNMVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVI 271
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLWVLVWLSA SSTPDR+ QISKYELEY+L ++Q+P ++ N K TVIPPF+RL
Sbjct: 272 FGLSGFLWVLVWLSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRL 330
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTWS+I+ANAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA GY+G
Sbjct: 331 LSKMPTWSLIIANAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVG 390
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
GL SD LI+ GTSVTLTRKI+QSIGFI PGIALIGLT+A+S +ASAWLTLA+G+KSFSH
Sbjct: 391 GLWSDGLIKSGTSVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVGLKSFSH 450
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SGFLVNLQEIAPQYSGVLHG+SNTAGT AAI+GTVG GFFVE+VGSFQGFLLLTS LYF
Sbjct: 451 SGFLVNLQEIAPQYSGVLHGMSNTAGTLAAIVGTVGVGFFVEIVGSFQGFLLLTSALYFT 510
Query: 369 SALFYIIFSTGERVNFDE 386
+A+FYIIFSTG+RVNF+E
Sbjct: 511 AAIFYIIFSTGKRVNFEE 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054570|ref|XP_002298326.1| predicted protein [Populus trichocarpa] gi|222845584|gb|EEE83131.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 312/378 (82%), Positives = 341/378 (90%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGGTLVDYYGGK++M WGVALWSLATFLTPWAADTSL ALLA RA++G
Sbjct: 148 SSFLWGYLISPIAGGTLVDYYGGKVVMGWGVALWSLATFLTPWAADTSLWALLATRAMLG 207
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNM+ARWFPQTERARAV IAM GF GNAIGL+LSPILMS+ GIFGPFVI
Sbjct: 208 IAEGVALPCMNNMIARWFPQTERARAVGIAMAGFQFGNAIGLMLSPILMSKGGIFGPFVI 267
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLWVLVWLSA SSTPDR QISKYELEYIL + K M NK K +IPPFRRL
Sbjct: 268 FGLSGFLWVLVWLSAISSTPDRSSQISKYELEYILNKGWKSFPMENKPKTNRIIPPFRRL 327
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTWS+I+ANAMHSWGFFVILSWMPIYFN +YH+DL+QA+WFSAVPWSVM F GY G
Sbjct: 328 LSKMPTWSLIIANAMHSWGFFVILSWMPIYFNTIYHVDLKQAAWFSAVPWSVMGFMGYFG 387
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SDMLI+ G SVTLTRKI+QSIGF PGIALIGLT A++P +ASAWLT+A+G+KSFSH
Sbjct: 388 GTWSDMLIRSGISVTLTRKIMQSIGFFGPGIALIGLTTARNPFLASAWLTIAVGLKSFSH 447
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SGFLVNLQEIAP+YSGVLHGISNTAGT AAI+GTVGAGFFVELVGSF+GFLLLTSLLYFL
Sbjct: 448 SGFLVNLQEIAPRYSGVLHGISNTAGTLAAIVGTVGAGFFVELVGSFRGFLLLTSLLYFL 507
Query: 369 SALFYIIFSTGERVNFDE 386
+ALFY IFSTGERVNFDE
Sbjct: 508 AALFYNIFSTGERVNFDE 525
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558820|ref|XP_002520433.1| Sialin, putative [Ricinus communis] gi|223540275|gb|EEF41846.1| Sialin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust.
Identities = 297/374 (79%), Positives = 334/374 (89%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGGTLVDYYGGK++M WGVALWSLATFLTP+AA+TSL L+AMRA++G
Sbjct: 155 SSFLWGYLISPIAGGTLVDYYGGKVVMGWGVALWSLATFLTPFAAETSLWVLMAMRALLG 214
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNM+ARWFP TERARAV IAM GF G AIGL LSPILMSQ GIFGPFVI
Sbjct: 215 IAEGVALPCMNNMIARWFPPTERARAVGIAMAGFQLGCAIGLTLSPILMSQGGIFGPFVI 274
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLWVLVWLSA SS+PDR QISK ELEYIL++KQ+ + NK K +IPPFRRL
Sbjct: 275 FGLSGFLWVLVWLSAISSSPDRSSQISKCELEYILKKKQQSFPVENKPKTTRIIPPFRRL 334
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTW++IVAN+MHSWGFFVILSWMPIYFN +YH+DL++A+WFSAVPWSVMA GY G
Sbjct: 335 LSKMPTWALIVANSMHSWGFFVILSWMPIYFNSIYHVDLKRAAWFSAVPWSVMAVMGYFG 394
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G+ SD LI+ G ++TLTRKI+QSIGF+ PGIALIGLT AKSP +ASAWLTLA+ +K+FSH
Sbjct: 395 GMWSDTLIRSGMTITLTRKIMQSIGFMGPGIALIGLTTAKSPTIASAWLTLAVALKAFSH 454
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SGFLVN QEIAPQYSGVLHGISNTAGT AAI+GTVGAGFFVELVGSFQGFLLLTS LYFL
Sbjct: 455 SGFLVNFQEIAPQYSGVLHGISNTAGTLAAIMGTVGAGFFVELVGSFQGFLLLTSALYFL 514
Query: 369 SALFYIIFSTGERV 382
SALFYI FSTGE++
Sbjct: 515 SALFYIFFSTGEKL 528
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455040|ref|XP_004145261.1| PREDICTED: probable anion transporter 4, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 310/378 (82%), Positives = 345/378 (91%), Gaps = 1/378 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGY VSPIAGG LVDYYGGK++M WGVALWSLATFLTPWAA+TSL ALLAMRA++G
Sbjct: 152 SSFLWGYFVSPIAGGALVDYYGGKMVMGWGVALWSLATFLTPWAAETSLWALLAMRALLG 211
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFP TERARAV IAM GF G+AIGLVLSPILMSQAGIFGPFVI
Sbjct: 212 IAEGVALPCMNNMVARWFPPTERARAVGIAMAGFQLGSAIGLVLSPILMSQAGIFGPFVI 271
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLWVLVWLSA SSTPDR+ QISKYELEY+L ++Q+P ++ N K TVIPPF+RL
Sbjct: 272 FGLSGFLWVLVWLSAISSTPDRNLQISKYELEYVLSKRQQPSVVENVPK-KTVIPPFKRL 330
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTWS+I+ANAMHSWGFFVILSWMPIYFN VYH+DLRQA+WFSAVPW+VMA GY+G
Sbjct: 331 LSKMPTWSLIIANAMHSWGFFVILSWMPIYFNSVYHVDLRQAAWFSAVPWAVMALMGYVG 390
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
GL SD LI+ GTSVTLTRKI+QSIGFI PGIALIGLT+A+S +ASAWLTLA+ +KSFSH
Sbjct: 391 GLWSDGLIKSGTSVTLTRKIMQSIGFIGPGIALIGLTSARSASLASAWLTLAVWLKSFSH 450
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
SGFLVNLQEIAPQYSGVLHG+SNTAGT AAI+GTVG GFFVE+VGSFQGFLLLTS LYF
Sbjct: 451 SGFLVNLQEIAPQYSGVLHGMSNTAGTLAAIVGTVGVGFFVEIVGSFQGFLLLTSALYFT 510
Query: 369 SALFYIIFSTGERVNFDE 386
+A+FYIIFSTG+RVNF+E
Sbjct: 511 AAIFYIIFSTGKRVNFEE 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819304|ref|XP_002877535.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata] gi|297323373|gb|EFH53794.1| hypothetical protein ARALYDRAFT_485075 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/380 (77%), Positives = 339/380 (89%), Gaps = 1/380 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG
Sbjct: 155 SSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVG 214
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFP TER+RAV IAM GF GN +GL+LSPILMSQ GI+GPFVI
Sbjct: 215 VAEGVALPCMNNMVARWFPSTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVI 274
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLW+LVWLSATSS PDRHPQI+K ELEYI ++KQ+P NK IPPF RL
Sbjct: 275 FGLSGFLWLLVWLSATSSAPDRHPQITKSELEYI-KQKQQPSTGENKRNTTGGIPPFGRL 333
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+
Sbjct: 334 LSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIA 393
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SD+LI+RGTS+TLTRKI+QSIGFI PGI+LIGLT AK P++ASAWL+LA+G+KSFSH
Sbjct: 394 GFWSDLLIRRGTSITLTRKIMQSIGFIGPGISLIGLTTAKQPLVASAWLSLAVGLKSFSH 453
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
GFL+NLQEIAP+YSGVLHG+ TAGT AAI+GTVG GFFVEL+GSFQGF+LLT++LY L
Sbjct: 454 LGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGTGFFVELLGSFQGFILLTAILYLL 513
Query: 369 SALFYIIFSTGERVNFDEAA 388
SALFY I++TGERV+FD A
Sbjct: 514 SALFYNIYATGERVDFDTTA 533
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17064732|gb|AAL32520.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/380 (77%), Positives = 341/380 (89%), Gaps = 1/380 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG
Sbjct: 155 SSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVG 214
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFP TER+RAV IAM GF GN +GL+LSPILMSQ GI+GPFVI
Sbjct: 215 VAEGVALPCMNNMVARWFPTTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVI 274
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLW+LVWLSATSS PDRHPQI+K ELEYI ++K++ M NK + IPPF RL
Sbjct: 275 FGLSGFLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRL 333
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+
Sbjct: 334 LSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIA 393
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SD+LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH
Sbjct: 394 GFWSDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSH 453
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
GFL+NLQEIAP+YSGVLHG+ TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY L
Sbjct: 454 LGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLL 513
Query: 369 SALFYIIFSTGERVNFDEAA 388
SALFY I++TGERV+FD A
Sbjct: 514 SALFYNIYATGERVDFDTTA 533
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79314547|ref|NP_001030824.1| putative anion transporter 4 [Arabidopsis thaliana] gi|332644707|gb|AEE78228.1| putative anion transporter 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/380 (77%), Positives = 341/380 (89%), Gaps = 1/380 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG
Sbjct: 155 SSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVG 214
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFP TER+RAV IAM GF GN +GL+LSPILMSQ GI+GPFVI
Sbjct: 215 VAEGVALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVI 274
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLW+LVWLSATSS PDRHPQI+K ELEYI ++K++ M NK + IPPF RL
Sbjct: 275 FGLSGFLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRL 333
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+
Sbjct: 334 LSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIA 393
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SD+LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH
Sbjct: 394 GFWSDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSH 453
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
GFL+NLQEIAP+YSGVLHG+ TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY L
Sbjct: 454 LGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLL 513
Query: 369 SALFYIIFSTGERVNFDEAA 388
SALFY I++TGERV+FD A
Sbjct: 514 SALFYNIYATGERVDFDTTA 533
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331630|ref|NP_190282.2| putative anion transporter 4 [Arabidopsis thaliana] gi|75253404|sp|Q66GI9.1|ANTR4_ARATH RecName: Full=Probable anion transporter 4, chloroplastic; AltName: Full=Phosphate transporter PHT4;3; Flags: Precursor gi|51536596|gb|AAU05536.1| At3g46980 [Arabidopsis thaliana] gi|332644705|gb|AEE78226.1| putative anion transporter 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/380 (77%), Positives = 341/380 (89%), Gaps = 1/380 (0%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGYL+SPIAGGTLVD YGGK++MAWGVALWSLATFLTPWAAD+SL ALLA RA+VG
Sbjct: 155 SSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVG 214
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+AEGVALP MNNMVARWFP TER+RAV IAM GF GN +GL+LSPILMSQ GI+GPFVI
Sbjct: 215 VAEGVALPCMNNMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVI 274
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
FGLSGFLW+LVWLSATSS PDRHPQI+K ELEYI ++K++ M NK + IPPF RL
Sbjct: 275 FGLSGFLWLLVWLSATSSAPDRHPQITKSELEYI-KQKKQISTMENKRISTSGIPPFGRL 333
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
LSKMPTW++IVAN+MHSWGFFVILSWMPIYFN VYH++L+QA+WFSAVPWS+MAFTGY+
Sbjct: 334 LSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIA 393
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G SD+LI+RGTS+TLTRKI+QSIGFI PGIALIGLT AK P++ASAWL+LA+G+KSFSH
Sbjct: 394 GFWSDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSH 453
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
GFL+NLQEIAP+YSGVLHG+ TAGT AAI+GTVGAGFFVEL+GSFQGF+LLT++LY L
Sbjct: 454 LGFLINLQEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLL 513
Query: 369 SALFYIIFSTGERVNFDEAA 388
SALFY I++TGERV+FD A
Sbjct: 514 SALFYNIYATGERVDFDTTA 533
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 389 | ||||||
| TAIR|locus:2065615 | 512 | PHT4;2 "AT2G38060" [Arabidopsi | 0.948 | 0.720 | 0.528 | 2.5e-106 | |
| TAIR|locus:2126066 | 541 | ANTR2 "AT4G00370" [Arabidopsis | 0.935 | 0.672 | 0.397 | 9.3e-75 | |
| TAIR|locus:2060694 | 512 | PHT4;1 "AT2G29650" [Arabidopsi | 0.933 | 0.708 | 0.404 | 2.6e-70 | |
| UNIPROTKB|E1B7R3 | 495 | SLC17A5 "Uncharacterized prote | 0.838 | 0.658 | 0.344 | 5.8e-50 | |
| UNIPROTKB|F1RQG9 | 497 | SLC17A5 "Uncharacterized prote | 0.838 | 0.655 | 0.348 | 6.7e-49 | |
| RGD|1311388 | 495 | Slc17a5 "solute carrier family | 0.838 | 0.658 | 0.326 | 8.5e-49 | |
| MGI|MGI:1924105 | 495 | Slc17a5 "solute carrier family | 0.838 | 0.658 | 0.323 | 1.4e-48 | |
| UNIPROTKB|Q5ZL94 | 484 | SLC17A5 "Uncharacterized prote | 0.838 | 0.673 | 0.332 | 4.7e-48 | |
| UNIPROTKB|Q9NRA2 | 495 | SLC17A5 "Sialin" [Homo sapiens | 0.838 | 0.658 | 0.332 | 4.7e-48 | |
| UNIPROTKB|E2R8R4 | 495 | SLC17A5 "Uncharacterized prote | 0.838 | 0.658 | 0.326 | 9.8e-48 |
| TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 198/375 (52%), Positives = 262/375 (69%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSFLWGY+ S + GG LVD YGGK ++AWGVALWSLAT LTPWAA S LALL +RA G
Sbjct: 142 SSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFG 201
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
LAEGVA+P+M +++RWFP ERA AV I+M GF GN +GL+L+P+++S GI GPF++
Sbjct: 202 LAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFIL 261
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN-KHKPATVIPPFRR 187
F G LWV W S ++ P P I++ EL I + KP+ KP P R
Sbjct: 262 FASLGLLWVSTWSSGVTNNPQDSPFITRSELRLI--QAGKPVQPSTISPKPN---PSLRL 316
Query: 188 LLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYL 247
LLSK+PTW+II AN ++WG+FV+LSWMP+YF V++++L+QA+WFSA+PW+ MA +GY
Sbjct: 317 LLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYY 376
Query: 248 GGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFS 307
G SD LI+ G SVT RKI+QSIGF+ PG++L+ L AKSP A+ ++T+A+ + SFS
Sbjct: 377 AGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFS 436
Query: 308 HSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGXXXXXXXXXX 367
+GFL+N+Q+IAPQY+G LHGISN AGT AAI+ T+G G+FV+ +GSFQ
Sbjct: 437 QAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYF 496
Query: 368 XXXXXXXXXSTGERV 382
+TGERV
Sbjct: 497 ATTVFWLLFATGERV 511
|
|
| TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 149/375 (39%), Positives = 225/375 (60%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSF WGYL++ I GG D +GGK+++ +GV WS AT +TP AA L LL +RA +G
Sbjct: 175 SSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMG 234
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+ EGVA+PAMNNM+++W P +ER+R++A+ G G+ GL SP+L+++ G F
Sbjct: 235 IGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYS 294
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNK-HKPATVIPPFRR 187
FG G +W L+WL S+P P +S+ E++K +L G+K +P TVIP ++
Sbjct: 295 FGSLGSIWFLLWLKFAYSSPKDDPDLSE--------EEKKVILGGSKPREPVTVIP-WKL 345
Query: 188 LLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYL 247
+LSK P W++I+++ H+WG F++L+WMP Y+N V +L ++ +PW MA +
Sbjct: 346 ILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANI 405
Query: 248 GGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFS 307
GG ++D L+ RG S+T RKI+QSIGF+ P L L+ K+P MA + + G +FS
Sbjct: 406 GGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFS 465
Query: 308 HSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGXXXXXXXXXX 367
SG N Q+I P+Y+GVL G+SNTAG A + GT G+ ++ GS+
Sbjct: 466 QSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVALYL 524
Query: 368 XXXXXXXXXSTGERV 382
+TGE++
Sbjct: 525 IGTLVWNLFATGEKI 539
|
|
| TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 152/376 (40%), Positives = 215/376 (57%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSF WGYL++ IAGG D GGK ++ +GV WS+AT LTP AA L LL +RA +G
Sbjct: 146 SSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMG 205
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+ EGVA+PAMNN++++W P ER+R++A+ G G+ GL SP L+ Q G F
Sbjct: 206 VGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYS 265
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGN--KHKPATVIPPFR 186
FG G +W+ +WL+ S+P P + L E++K L+ N +P IP +R
Sbjct: 266 FGSLGTVWLTLWLTKAESSPLEDPTL--------LPEERK-LIADNCASKEPVKSIP-WR 315
Query: 187 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGY 246
+LSK P W++I + H+WG F++L+WMP Y++ V +L ++ S PW MA +
Sbjct: 316 LILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISAN 375
Query: 247 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 306
GG ++D L+ RG SVT RKI+Q+IGF+ P L L SP MA + + G +F
Sbjct: 376 AGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAF 435
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGXXXXXXXXX 366
S SG N Q+IAP+YSGVL G+SNTAG A +LGT G ++ GS+
Sbjct: 436 SQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQH-GSWDDVFTISVGLY 494
Query: 367 XXXXXXXXXXSTGERV 382
STGE++
Sbjct: 495 LVGTVIWNLFSTGEKI 510
|
|
| UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 116/337 (34%), Positives = 182/337 (54%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+++ I GG + GGK+++ +GV ++ T TP AAD AL+A+RA+ GL
Sbjct: 114 SFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADFGFGALVALRALEGL 173
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PAM+ M + W P ER++ ++I+ G G + L LS ++ F F
Sbjct: 174 GEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGVICYYMNWTYVFYFF 233
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
GL G +W ++W+ S TP+ H I+ YE EYIL + L + K IP +L
Sbjct: 234 GLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQL---SSQKSVPWIP----ML 286
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+P W+I+VA+ ++W F+ +L+ +P Y V ++++ + SAVP+ L G
Sbjct: 287 KSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCWLCMILSG 346
Query: 250 LLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSF 306
+D L R TL R++ IG I P I L+ G +A A+LT++ + F
Sbjct: 347 QAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYS-LAVAFLTISTTLGGF 405
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 343
SGF +N +IAP Y+G+L GI+NT T ++G +
Sbjct: 406 CSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPI 442
|
|
| UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 118/339 (34%), Positives = 184/339 (54%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+++ I GG + GGK+++ +G+ S+ T LTP AAD + AL+A+RA+ GL
Sbjct: 114 SFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADFGVGALIALRALEGL 173
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAI--AMGGFTSGNAIGLVLSPILMSQAGIFGPFV 127
EGV PAM+ M + W P ER++ ++I A+ G G + L LS I+ F
Sbjct: 174 GEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLSGIICFYLNWTYVFY 233
Query: 128 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRR 187
+FGL G +W ++W S TPD H IS YE EYIL + L + K IP
Sbjct: 234 LFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQL---SSQKSVPWIP---- 286
Query: 188 LLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYL 247
+L +P W+I+VA+ ++W F+ +L+ +P Y V ++++ + SAVP+ L
Sbjct: 287 MLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYFGCWVCMIL 346
Query: 248 GGLLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMK 304
G +D L + TL R++ IG P + L+ G +A A+LT++ +
Sbjct: 347 SGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYS-LAVAFLTISTTLG 405
Query: 305 SFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 343
F SGF ++ +IAP Y+G+L GI+NT T ++G V
Sbjct: 406 GFCSSGFSISHLDIAPSYAGILLGITNTFATIPGMIGPV 444
|
|
| RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 110/337 (32%), Positives = 184/337 (54%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+V+ I GG + GGK+++ G+ ++ T TP AAD ++AL+ +RA+ GL
Sbjct: 114 SFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADLGVVALIVLRALEGL 173
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PAM+ M + W P ER++ + I+ G G I L LS I+ F +F
Sbjct: 174 GEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICYYMNWTYVFYLF 233
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
GL G +W ++W+ S TP+ H IS YE EYI+ + L + K + P+ +L
Sbjct: 234 GLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK----VVPWVSIL 286
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+P W+I+VA+ ++W F+ +L+ +P Y + ++++ + SA+P+ + G
Sbjct: 287 KSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCWLCMIVCG 346
Query: 250 LLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSF 306
+D L ++ S R+I IG + P + L+ G +A A+LT++ + F
Sbjct: 347 QAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYS-LAVAFLTISTTLGGF 405
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 343
+ SGF +N +IAP Y+G+L GI+NT T ++G +
Sbjct: 406 ASSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPI 442
|
|
| MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 109/337 (32%), Positives = 182/337 (54%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+V+ I GG + GGK+++ G+ S+ T TP AAD ++ L+ +RA+ GL
Sbjct: 114 SFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADLGVVTLVVLRALEGL 173
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PAM+ M + W P ER++ + I+ G G I L LS I+ F +F
Sbjct: 174 GEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGIICYYMNWTYVFYLF 233
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
G+ G +W ++W+ S TP+ H IS YE EYI+ + L + K + P+ +L
Sbjct: 234 GIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQL---SSQK----VVPWGSIL 286
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+P W+I+VA+ ++W F+ +L+ +P Y + ++++ + SA+P+ L G
Sbjct: 287 KSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCWLCMILCG 346
Query: 250 LLSDML-IQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSF 306
+D L ++ S R+I +G + P + L+ G +A A+LT++ + F
Sbjct: 347 QAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYS-LAVAFLTISTTLGGF 405
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 343
+ SGF +N +IAP Y+G+L GI+NT T + G +
Sbjct: 406 ASSGFSINHLDIAPSYAGILLGITNTFATIPGMTGPI 442
|
|
| UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 112/337 (33%), Positives = 181/337 (53%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+++ I GG L GGK+++ +G+ S+ T LTP AAD + L+A+RA+ GL
Sbjct: 103 SFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADLGVGYLIAVRALEGL 162
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PAM++M + W P ER++ ++I+ G G + L LS ++ F IF
Sbjct: 163 GEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGLICYYMNWVYVFYIF 222
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
G G LW W+ S P+ H IS+ E EYIL + L + K P+R +L
Sbjct: 223 GALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQL---STQKSV----PWRPIL 275
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+P W+I+VA+ ++W F+ +L+ +P Y + D ++ + SA+P+ L G
Sbjct: 276 ESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYFGCWLCIILSG 335
Query: 250 LLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSF 306
++D L ++ S RK IG I P + L+ G +A A++T++ + F
Sbjct: 336 QIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYE-LAVAFVTISTTLGGF 394
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 343
SG+ +N +IAP Y+G+L GI+N+ T ++G V
Sbjct: 395 CTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPV 431
|
|
| UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 112/337 (33%), Positives = 180/337 (53%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+++ I GG + GGK+++ +G+ ++ T TP AAD + L+ +RA+ GL
Sbjct: 114 SFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGL 173
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PAM+ M + W P ER++ ++I+ G G I L LS I+ F F
Sbjct: 174 GEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFF 233
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
G G W L+W+ S TP +H +IS YE EYIL + L + K +P +L
Sbjct: 234 GTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQL---SSQKSVPWVP----IL 286
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+P W+I+VA+ ++W F+ +L+ +P Y + ++++ + S++P+ L G
Sbjct: 287 KSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLCMILSG 346
Query: 250 LLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSF 306
+D L + TL R+I IG I P + L+ G +A A+LT++ + F
Sbjct: 347 QAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCDYS-LAVAFLTISTTLGGF 405
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 343
SGF +N +IAP Y+G+L GI+NT T ++G V
Sbjct: 406 CSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPV 442
|
|
| UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 110/337 (32%), Positives = 181/337 (53%)
Query: 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGL 69
SF +GY+++ I GG + GGK+++ +G+ ++ T TP AAD + AL+ +RA+ GL
Sbjct: 114 SFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADFGVGALIVLRALEGL 173
Query: 70 AEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 129
EGV PAM+ M + W P ER++ ++I+ G G I L LS I+ F +F
Sbjct: 174 GEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICFYMNWTYVFYLF 233
Query: 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLL 189
G+ G +W ++W+ S TP+ H IS+ E EYIL + L + K IP +L
Sbjct: 234 GIVGIIWFILWIFLVSETPETHKTISRQEKEYILSSLKNQL---SSQKSVPWIP----ML 286
Query: 190 SKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGG 249
+P W+I+VA+ ++W F+ +L+ +P Y + ++++ SA+P+ L G
Sbjct: 287 KSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFGCWLCMILSG 346
Query: 250 LLSDMLIQRGTSVTL-TRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSF 306
+D L + T+ R++ IG I P + L+ G +A +LT++ + F
Sbjct: 347 QAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYS-LAVVFLTISTTLGGF 405
Query: 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV 343
SGF +N +IAP Y+G+L GI+NT T ++G V
Sbjct: 406 CSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPV 442
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q66GI9 | ANTR4_ARATH | No assigned EC number | 0.7763 | 0.9742 | 0.7110 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 389 | |||
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 4e-45 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 3e-32 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-17 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 1e-13 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 2e-09 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-06 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 2e-05 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 3e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 6e-05 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.001 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 0.004 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 0.004 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 4e-45
Identities = 105/378 (27%), Positives = 177/378 (46%), Gaps = 11/378 (2%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SS +G ++ I G L Y K + G+ L S+ + + PWAA + ++ R + G
Sbjct: 83 SSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQG 142
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFV 127
LA+G PA + ++ +W P ER+R + ++ GF G I L +S L S G F
Sbjct: 143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY 202
Query: 128 IFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRR 187
+FG+ G W L+W + P HP ISK+E +YI Q + P IP
Sbjct: 203 VFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIP---- 258
Query: 188 LLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYL 247
+P W+I A H W + ++ +++P + ++V + ++ S++P+
Sbjct: 259 --KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIF 316
Query: 248 GGLLSDMLIQRGT-SVTLTRKILQSIGFIAPGIALI-GLTAAKSPVMASAWLTLAIGMKS 305
G L+D L T S+T RKI IG + PGI + + + LTLA + S
Sbjct: 317 AGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSS 376
Query: 306 FSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL--VGSFQGFLLLTS 363
+G L+N ++AP++ G + GI+ G ++ + AG + + L+ +
Sbjct: 377 GPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMA 436
Query: 364 LLYFLSALFYIIFSTGER 381
+ L +FY+IF + ER
Sbjct: 437 FVNILCVIFYLIFGSAER 454
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 97/373 (26%), Positives = 165/373 (44%), Gaps = 15/373 (4%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
S+F WGY+V GG L+D +G + +A + +W + T L A + ++L +R ++G
Sbjct: 36 SAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ--AFAGAYVSLYILRVLLG 93
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL-SPILMSQAGIFG--- 124
AE P + +VA WFP +ERA AV+I F S +G ++ P++ F
Sbjct: 94 AAEAPFFPGIILIVASWFPASERATAVSI----FNSAQGLGGIIGGPLVGWILIHFSWQW 149
Query: 125 PFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP 184
F+I G+ G +W ++WL P + + E +YI K
Sbjct: 150 AFIIEGVLGIIWGVLWL-KFIPDPPQKAKWLTEEEKYI-VVGGLLAEQQGKGPSTPKKYQ 207
Query: 185 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT 244
+ LL W + + + + G L+W P Y + + +A + +++P V
Sbjct: 208 IKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIG 267
Query: 245 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMK 304
LGG LSD+L++RG S+ RK I + + + P A A + L
Sbjct: 268 MILGGRLSDLLLRRGKSLVFARK-TAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL 326
Query: 305 SFSHSGFLVNLQEIAPQYS-GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTS 363
G+ + + + AP G+ G+ N+ G I+G + G GSF G L++ +
Sbjct: 327 GAGAIGWAL-ISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVA 385
Query: 364 LLYFLSALFYIIF 376
L + AL Y++
Sbjct: 386 ALALIGALSYLLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 81/335 (24%), Positives = 139/335 (41%), Gaps = 28/335 (8%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
++F GY ++ G L D +G + ++ G+ L++L L +A+ SL LL +R + G
Sbjct: 39 TAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQG 96
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
L G PA ++A WFP ER RA+ + GF G A+G +L +L S G F+I
Sbjct: 97 LGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLI 156
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
+ L ++ + R + + + P +L
Sbjct: 157 LAILALLAAVLAAL------------------LLPRPPPESKRPKPAEEAPAPLVPAWKL 198
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
L + P +++A + + FF +L+++P+Y V + A + + A L
Sbjct: 199 LLRDPVLWLLLALLLFGFAFFALLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLL 257
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G LSD L +R R +L + I + L L+ +S + L L
Sbjct: 258 GRLSDRLGRR------RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVF 311
Query: 309 SGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT 342
+ ++AP + G G+ NTAG+ LG
Sbjct: 312 PALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 91/369 (24%), Positives = 151/369 (40%), Gaps = 59/369 (15%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
S+F GY + + G L D +G + ++ G+ L++L + L +A +SL LL R ++G
Sbjct: 41 SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLG 98
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
L G PA ++A WFP ER RA+ + GF G +G +L +L G F+I
Sbjct: 99 LGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
+ G L L+ L
Sbjct: 159 LAILGLLLALLL-----------------------------------------------L 171
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
+ +A + S+G++ +L+++P+Y V + +A ++ LG
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
GLLSD L R++L IG + + L+ L A S + L L F+
Sbjct: 232 GLLSDRLG--------RRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283
Query: 309 SGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF 367
L E+AP + G G+ NT G+ LG + AG ++ G + G L+ + L
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALAL 342
Query: 368 LSALFYIIF 376
L+AL ++
Sbjct: 343 LAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 70/360 (19%), Positives = 129/360 (35%), Gaps = 26/360 (7%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
SSF Y +S G++ D ++ + G+ L ++ ++ TSL + A+ A+ G
Sbjct: 37 SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--TSLWVMAALWALNG 94
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP--- 125
+ +G+ P V +WF ++ER V+ G + L P+++
Sbjct: 95 IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL---LPPLVLFGIAELYSWHW 151
Query: 126 -FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPP 184
F++ G+ + L+ +P + + E + +
Sbjct: 152 VFIVPGIIAIIVSLICFLLLRDSP-QSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIF-- 208
Query: 185 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFT 244
+ +L W I + IL W P+Y +ASW + +
Sbjct: 209 LQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLY-ELGGLV 267
Query: 245 G-YLGGLLSDMLIQ-RGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG 302
G L G LSD L R + + L I + + L A +P+M L A+G
Sbjct: 268 GTLLAGWLSDKLFNGRRGPLAVFFMAL-----IIVSLLVYWLNPAANPLMDLICL-FALG 321
Query: 303 MKSFSHSGFLVNLQ--EIAPQYS-GVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL 359
+ L+ + E+AP+ + G G IL + G+ + G + G
Sbjct: 322 FLVYG-PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 80/394 (20%), Positives = 141/394 (35%), Gaps = 45/394 (11%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
S+F Y VS G L D + MA+G+ L ++ L + SL + + G
Sbjct: 71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNIL--FGFSPSLFLFAVLWVLNG 128
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF----- 123
+G+ P + WF + ER +I + + + IG L+P++ A
Sbjct: 129 WFQGMGWPPCARTITHWFSRKERGTWWSI----WNTSHNIGGALAPLVALLAFFAFHGGW 184
Query: 124 -GPFVIFGLSGFLWVLVWLSATSSTPDR--HPQISKYELEYILREKQKPLLMGNKHKPAT 180
F G+ + L+ L P P I +Y + + ++ K
Sbjct: 185 RAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEE--------EKENE 236
Query: 181 VIPPFRRLLSKMPT----WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW-FSA 235
+ ++ + + W + +AN + I W P+Y + V L +A+W S
Sbjct: 237 GLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISL 296
Query: 236 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA 295
+ + T L G LSD L + R + I + +L+ A + S
Sbjct: 297 FEVAGLPGT-LLAGWLSDKLFKG------RRGPMALIFMLLITASLVLYWLAPN---GSY 346
Query: 296 WLTLAI-GMKSFSHSG--FLVNLQ--EIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFF 348
L + + F G L+ L E P + +G G A L + G+
Sbjct: 347 LLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYI 406
Query: 349 VELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 382
+ G GF++L+ L+ L + E
Sbjct: 407 ADTWGWDGGFIVLSIAA-LLAILLLLPVWNAEER 439
|
Length = 448 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
S+ L G + G L D G + ++ W + L+S+ T L A T++ LL +R + G
Sbjct: 59 SAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAG 116
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
L G +P +N +V+ + P+ R AV + G+ G A+G L+ L+ G F +
Sbjct: 117 LGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176
Query: 129 FGLSGFLWVLV 139
G++ L +L+
Sbjct: 177 GGIAPLLLLLL 187
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
+ + G L+ G L D +G K ++ G+ ++ L+T + A +++ L+ R + G
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIARFLQG 62
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
AL A ++A +P ER A+ + G G +G L +L G PF+
Sbjct: 63 FGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122
Query: 129 FGL 131
+
Sbjct: 123 LAI 125
|
Length = 141 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 11 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLA 70
F Y++ I ++ G + +A + LW +A+ T +A T +L +R +VG+A
Sbjct: 52 FYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--TGPESLYLLRILVGIA 109
Query: 71 EGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF---GPFV 127
E LP + + WFP RARA A+ M A+GL+LS +++ G+ G
Sbjct: 110 EAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQW 169
Query: 128 IFGLSGF----LWVLVWLSATSSTPDRHPQISKYE 158
+F L GF L V+ W +PD+ + + +
Sbjct: 170 LFLLEGFPSVILGVMTWF-WLDDSPDKAKWLDEED 203
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 27/353 (7%)
Query: 23 GTLVDYYGGKIIMAWGVALWSLATFLTPWA-ADTSLLALLAMRAVVGLAEGVALPAMNNM 81
G L D +GG+ + L + +A S LL + ++GLA M
Sbjct: 70 GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM-PN 128
Query: 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL 141
+ +FP+ ++ A+ IA G G A+ +++P++ G + G+ + +
Sbjct: 129 ASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAV 187
Query: 142 SATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 201
A D R KP L + + S TW + +
Sbjct: 188 LAWLGMNDVPE----------HRASVKPQLP----------AQLKAVFSNKDTWLLSLLY 227
Query: 202 AMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 261
GF +++P+Y + + A + + + A LGG LSD + G
Sbjct: 228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRR 285
Query: 262 VTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAP 320
VTL + ++ + L G S V+ A +L L + + S F + I P
Sbjct: 286 VTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPV-IFP 344
Query: 321 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 373
+ +G + GI G + G ++L GS+ G +L Y ++ +
Sbjct: 345 KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397
|
Length = 417 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 71/369 (19%), Positives = 118/369 (31%), Gaps = 38/369 (10%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
+++ G + L + ++ +AL+ ++ L+ A S LL RA+ G
Sbjct: 55 TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALAG 112
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
LA GV + AR P +R RA+A+ G T +G+ L L +FG
Sbjct: 113 LAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL---GQLFGWRAT 169
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
F L +L L P + RL
Sbjct: 170 FLAIAVLALLALLLLWKLLPPS----------------------EISGSLPGPLRTLLRL 207
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
L + ++A + G F + +++ + V + S LG
Sbjct: 208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG 267
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
G L+D R+ L + + L SP +A A L L S +
Sbjct: 268 GRLAD---------RGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPAL 318
Query: 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368
G L +AP + + ++ A LG G ++ +G L
Sbjct: 319 QGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGY--AATGWVGAALLL 376
Query: 369 SALFYIIFS 377
AL + S
Sbjct: 377 LALLLALLS 385
|
Length = 394 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
S F G L+ + G L D +G K + G L+ + L +A S L+ R +VG
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 69 LAEGVA 74
L G
Sbjct: 113 LGVGGI 118
|
Length = 449 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 14/176 (7%)
Query: 15 YLVSPIAG---GTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE 71
++ P G G L D +G K +M W + +S+ T L+ A+ +L L R +VG+
Sbjct: 63 FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTL--SRFIVGMGM 120
Query: 72 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 131
+ +P+ +++A A + GF GN I P G F +
Sbjct: 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV--- 177
Query: 132 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRR 187
G L VL+ + + P+ SK E L K K ++ F R
Sbjct: 178 -GLLPVLLVIYIRARAPE-----SKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227
|
Length = 426 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 17 VSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALP 76
+S GG L D +G + + G L+ L A SL AL + G+A
Sbjct: 53 MSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY--AIADSLAALYLTYGLASAGVGIAYG 110
Query: 77 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 131
N +WFP +R A I +GG+ G+ I L +++ G+ F+ G+
Sbjct: 111 IALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI 164
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 22 GGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81
G VD YG +I++ +G + L L +A SL AL A V G+ G
Sbjct: 58 EGWFVDKYGPRIVVMFGGIMCGLGWVLNAYA--DSLPALYAAAVVAGIGAGAVYGTCVGN 115
Query: 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 131
+WFP +R A + GF +G A+ +V ++ +G F+ FGL
Sbjct: 116 ALKWFPD-KRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQAAFMYFGL 164
|
This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 100.0 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 100.0 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 100.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.98 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.98 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.95 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.94 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.92 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.9 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.84 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.83 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.83 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.78 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.77 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.74 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.72 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.68 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.6 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.59 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.56 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.55 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.55 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.53 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.52 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.51 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.51 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.5 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.5 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.5 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.5 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.49 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.49 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.49 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.49 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.47 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.46 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.45 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.45 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.44 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.44 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.43 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.43 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.43 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.41 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.41 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.41 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.39 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.39 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.39 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.38 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.38 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.38 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.38 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.38 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.37 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.37 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.37 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.36 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.36 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.35 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.35 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.34 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.34 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.34 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.33 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.31 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.31 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.3 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.3 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.28 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.27 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.26 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.25 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.25 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.23 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.23 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.22 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.18 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.17 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.17 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.17 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.15 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.14 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.13 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.13 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.13 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.12 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.12 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.11 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.11 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.11 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.09 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.09 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.06 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.06 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.04 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.03 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.02 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.02 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.02 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.01 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.01 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.99 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.98 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.97 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.92 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.88 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.85 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.85 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.83 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.83 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.82 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.81 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.8 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.8 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.78 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.76 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.74 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.74 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.73 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.7 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.7 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.66 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.66 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.63 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.59 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.56 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.55 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.55 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.45 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.44 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.42 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.34 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.31 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.3 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.17 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.12 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.09 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.08 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.07 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 98.04 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.96 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.93 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.87 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.81 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.74 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.69 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.57 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.55 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.35 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.21 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.12 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.08 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.07 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.05 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.89 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.88 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.56 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.42 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.42 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.18 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.71 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.51 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.51 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.93 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.89 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.85 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.73 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.52 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.43 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.49 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 91.53 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 91.01 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 87.11 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 85.9 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.49 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 83.51 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 82.61 | |
| PF07857 | 254 | DUF1632: CEO family (DUF1632); InterPro: IPR012435 | 80.5 |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=305.57 Aligned_cols=378 Identities=32% Similarity=0.622 Sum_probs=334.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|++.+++..|+.+++++.|+++||+|.|+++..+.++.++++++.+++...+++.+++.|++||++.|...|+...+
T Consensus 73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i 152 (466)
T KOG2532|consen 73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSI 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhce
Confidence 57899999999999999999999999999999999999999999999999876778888999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-cCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
.++|.|++||++..++...+..+|.+++-+++|++.+. .||+..|++.++.+++..++++.+..|+|++++...++|.+
T Consensus 153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~ 232 (466)
T KOG2532|consen 153 LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELK 232 (466)
T ss_pred eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHH
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999999988888888
Q ss_pred HHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
...+...+. +.++....|++++++++.+|.+.+..++...+.+.+..+.|.|+++.+|++..+.|++.+++.+.
T Consensus 233 ~I~~~k~~~------~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~ 306 (466)
T KOG2532|consen 233 YIEKGKSEA------HVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLA 306 (466)
T ss_pred HHHhccccc------ccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHH
Confidence 877654432 11112677999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc--hhhHHHHHHHHHhhhhccccccchhhhcc
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--PVMASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
..+..++.|.++||..+|....+..++....++..+.++.++.+...+. .+..+.+..+..+..+...+.......+.
T Consensus 307 ~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ 386 (466)
T KOG2532|consen 307 MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI 386 (466)
T ss_pred HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc
Confidence 9999999999999998876666777888888898888888887776553 33455555566666666667777777777
Q ss_pred cccchhHHHHHHHHHhhhhhhHHhHHHHHHHh-h-hhhHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Q 016442 319 APQYSGVLHGISNTAGTFAAILGTVGAGFFVE-L-VGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFD 385 (389)
Q Consensus 319 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (389)
.|++.+..+|+.+....+.++++|.+.|.+.. . ..+|+.+|.+.+++.+++.+.+.++.+.+++++.
T Consensus 387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~ 455 (466)
T KOG2532|consen 387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWT 455 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCcc
Confidence 89999999999999999999999999999993 2 3469999999999999999888777666655543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=302.05 Aligned_cols=378 Identities=27% Similarity=0.491 Sum_probs=292.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.++..++++.+++.|+++|++.+...+....+
T Consensus 76 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~ 155 (465)
T TIGR00894 76 ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKI 155 (465)
T ss_pred HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHH
Confidence 46789999999999999999999999999999999999999999888755422568889999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-cCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
++|++|+++|++++++...+..+|..+++.+++.+.+. .+||+.|++.+++.++..+.++...+|+|+++++.+++|.+
T Consensus 156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 235 (465)
T TIGR00894 156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKK 235 (465)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHH
Confidence 99999999999999999999999999999999999988 49999999999998888777777777777655544444443
Q ss_pred HHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
...+..++ +.++++.+.++++++++|.+|...+..++.....+.+.+|+|.|+++.+|++..+.+...+...++
T Consensus 236 ~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~ 309 (465)
T TIGR00894 236 YINSSLQG------QKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309 (465)
T ss_pred HHHhhccc------ccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence 33221111 111112234688999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhH-HHHHHHHHhhHHHHHHHHHhh-ccchhhHHHHHHHHHhhhhccccccchhhhcc
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLT-RKILQSIGFIAPGIALIGLTA-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
..++.++.|+++||+++|+...... ++.....+........+.... .......+....+..+......+.......+.
T Consensus 310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 389 (465)
T TIGR00894 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL 389 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhc
Confidence 9999999999999998775543222 122222222222222222222 22333333333333333333344445556688
Q ss_pred cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Q 016442 319 APQYSGVLHGISNTAGTFAAILGTVGAGFFVELV--GSFQGFLLLTSLLYFLSALFYIIFSTGERVNFD 385 (389)
Q Consensus 319 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (389)
.|+.+|.+.|+.+..+.++..++|.+.|.+.|.. +++...|.+.++..+++.+......+.++++++
T Consensus 390 ~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~ 458 (465)
T TIGR00894 390 APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWA 458 (465)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeecceecCCC
Confidence 8889999999999999999999999999998754 458888888888888887777666655555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=286.49 Aligned_cols=364 Identities=20% Similarity=0.246 Sum_probs=291.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|+|++.|++.+.+.++..+.|.++||.++|+.+..++++.++..++++++ ++.+.+.+..+++|..+|..+|++...
T Consensus 64 ~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~ 141 (448)
T COG2271 64 TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--PSLFLFAVLWVLNGWFQGMGWPPCART 141 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 588999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhh--hHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLS--PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 159 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~--~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
++.|+|++|||+..++++.+.++|..+.|++. +.+..+.+||..|++.++++++..+..++..+++|++..-.+.+|.
T Consensus 142 i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~ 221 (448)
T COG2271 142 ITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEY 221 (448)
T ss_pred HHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHh
Confidence 99999999999999999999999999999999 8888888999999999999999999988888888876543333322
Q ss_pred HHHHHhcCCccccCCCCC--CCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHH
Q 016442 160 EYILREKQKPLLMGNKHK--PATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVP 237 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (389)
+....+.. +++++. ......-++.+++||.+|.+++++.+.+..-+++..|.|.|+.|..|+|..+++...+.+
T Consensus 222 ~~d~~e~~----~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lf 297 (448)
T COG2271 222 RGDPLEIY----EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLF 297 (448)
T ss_pred hcCchhhh----hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11000000 001111 111123456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccch-hhHHHHHHHHHhhhhccccc-cchhh
Q 016442 238 WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP-VMASAWLTLAIGMKSFSHSG-FLVNL 315 (389)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 315 (389)
-.+++.|.++.|+++||+.+.++ .....+..+...+++......++. .......++..++....+.. .-...
T Consensus 298 E~agl~G~Ll~GwlSDklfkgrR------~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a 371 (448)
T COG2271 298 EVAGLPGTLLAGWLSDKLFKGRR------GPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAA 371 (448)
T ss_pred HHHhhHHHHHHHHHHHHhccccc------chHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999875422 233344444444444444433322 23333333333333333332 23456
Q ss_pred hcccc-cchhHHHHHHHHHhhh-hhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 316 QEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 316 ~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
.|..| +..|++.|+...++++ |.+.+....|++.|.+| +...|++..+.++++.+++....+
T Consensus 372 ~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 372 AEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHHHHHHHHHHHHHHHHHHHh
Confidence 68888 6899999999999999 99999999999999987 888888888877777776665544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=282.44 Aligned_cols=343 Identities=21% Similarity=0.268 Sum_probs=283.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.+.|++.|.|.++..+++|+...+.||+.||++++....++.++.++++++ +||+.++++|++.|+..|.+++...++
T Consensus 48 ~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA--p~f~~Ll~aR~~~g~a~G~f~~i~~~~ 125 (394)
T COG2814 48 GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLLLARALAGLAHGVFWSIAAAL 125 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
..|..|++||++++++...+..++.++|.+++.++.|.+|||..|+..+.++++..+..+...| |++.+
T Consensus 126 a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~--------- 194 (394)
T COG2814 126 AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEIS--------- 194 (394)
T ss_pred HHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCC---------
Confidence 9999999999999999999999999999999999999999999999999999998888888877 21111
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
++++.+..+..+++|+|+++...+..++...+.+...+|+..++++..|+|++..++....++++.
T Consensus 195 --------------~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~ 260 (394)
T COG2814 195 --------------GSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAG 260 (394)
T ss_pred --------------CCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHH
Confidence 011122233458899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-hccchhhHHHHHHHHHhhhhccccccchhhhcccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (389)
.+|+.++|++.|| +.+ .............++.+. ..++.+.......+.................+..|
T Consensus 261 ~~Gn~~gGrl~dr-~~~---------~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p 330 (394)
T COG2814 261 FIGNLLGGRLADR-GPR---------RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAP 330 (394)
T ss_pred HHHHHHHhhhccc-cch---------hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC
Confidence 9999999999999 555 222222223333333333 23333333333333222223333344455556667
Q ss_pred cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 016442 321 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 382 (389)
Q Consensus 321 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (389)
|.+..+.+++....|+|..+|..++|.+.|+.| +....+..+...+++..+.....+.+++
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999987 9999999999888888877766554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=296.01 Aligned_cols=345 Identities=14% Similarity=0.129 Sum_probs=271.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++++.+.++ +|++.+++.|+++|++.+...+...++
T Consensus 44 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~~G~~~~~~~~~~~~~ 121 (390)
T PRK03545 44 AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--WNFTVLLISRIGIAFAHAIFWSITASL 121 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999 999999999999999999889999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+.+.++|..++|++++.+.++.|||+.|++.+++.++..+......|+++++++
T Consensus 122 i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~--------- 192 (390)
T PRK03545 122 AIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS--------- 192 (390)
T ss_pred HHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---------
Confidence 99999999999999999999999999999999999999999999999998887766655555444332110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+..++.++.+|+|+++......++.........++.+.++++..|+++.+.+.+.....++.
T Consensus 193 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~ 254 (390)
T PRK03545 193 ------------------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAG 254 (390)
T ss_pred ------------------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 01124567889998887766666666666666788888888878999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHH-HHHHHHhhhhccccccchhhhcccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAP 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (389)
++++++.+++.||+++| .+..................++.+.... ..+.+.+. ....+.......+..|
T Consensus 255 ~~g~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~ 324 (390)
T PRK03545 255 IIGSVLFSRLGNRHPSG---------FLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP 324 (390)
T ss_pred HHHHHHHHHHhhccchh---------HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC
Confidence 99999999999999876 2222222222222222222333333322 23333332 2333344556667778
Q ss_pred cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 016442 321 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDE 386 (389)
Q Consensus 321 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (389)
+.+++++|+.+...++|..+||.+.|.+.|+.| +...+...+.+.+++.+......++++.+.||
T Consensus 325 ~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (390)
T PRK03545 325 DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSILIFRRFPVTLEE 389 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHHccccchhhcc
Confidence 899999999999999999999999999999998 88999988888888887776666655444444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=290.95 Aligned_cols=367 Identities=25% Similarity=0.421 Sum_probs=282.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+++.++..++.++.|+++||+|||+++..+..+.+++..+++++ +|++.+++.|+++|++.+...+...++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 106 (399)
T TIGR00893 29 AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--GAYVSLYILRVLLGAAEAPFFPGIILI 106 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 578899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+...++|..+++.+++.+.+..+||+.|++.++..++..+...+..+|++++++..++++++.
T Consensus 107 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (399)
T TIGR00893 107 VASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYI 186 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999988888777766666666655443333222221
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
..+.... +.++++++++.+.+.++.+|+|+++...+..++..........+.|.|+++.+|.++.+.+.+.....++.
T Consensus 187 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (399)
T TIGR00893 187 VVGGLLA--EQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVG 264 (399)
T ss_pred cchhhcc--ccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHH
Confidence 1111111 11112222334456778899999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP- 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (389)
.++.++.+++.||+++|+...... .....................+..+.......++.+..+ ..+....+..|..|
T Consensus 265 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 342 (399)
T TIGR00893 265 FIGMILGGRLSDLLLRRGKSLVFA-RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPG 342 (399)
T ss_pred HHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh
Confidence 999999999999999985221111 011111111111222222212233333333333333333 45566677777776
Q ss_pred cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016442 321 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI 374 (389)
Q Consensus 321 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (389)
++|+++.|+.+...+++..++|.+.|.+.|..|++...+.+.+++.+++.+...
T Consensus 343 ~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 343 NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999987688888888877777666544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=300.93 Aligned_cols=360 Identities=17% Similarity=0.133 Sum_probs=262.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh-----hcccchHHHHHHHHHhhhhhccchh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-----AADTSLLALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~~~~~ 76 (389)
+|.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+..++ + +|++.+++.|+++|++.+...|
T Consensus 64 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~ 141 (467)
T PRK09556 64 TELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGP 141 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccch
Confidence 57899999999999999999999999999999998888888777766554 5 8999999999999999999999
Q ss_pred hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc---CcchhHHHHhhHHHHHHHHHHHhccCCCCCCCc
Q 016442 77 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ 153 (389)
Q Consensus 77 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
...++++||+|+++|++++|+.+.+.++|.++++.+..++.+.. +||..|.+.+++.++..+..++..+++|++.+.
T Consensus 142 ~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~ 221 (467)
T PRK09556 142 CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGW 221 (467)
T ss_pred HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCC
Confidence 99999999999999999999999999999999999987776643 699999988888887777767666666554332
Q ss_pred CcHHHHHHHHHhcCCccccCCCCCCC-CCchh-HHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhh
Q 016442 154 ISKYELEYILREKQKPLLMGNKHKPA-TVIPP-FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS 231 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (389)
.++++. ..+.... +.+++++++ ...+. .++.+|+|.+|...+..++......+..+|.|.|+++.+|+++.+++
T Consensus 222 ~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~ 297 (467)
T PRK09556 222 GKAEEI--FGEPISE--EDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAI 297 (467)
T ss_pred CChhhc--ccCccch--hhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 222110 0000000 000000011 11111 23478999999999998888888888999999999988999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhH-HHHHHHHHhhhhccccc
Q 016442 232 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA-SAWLTLAIGMKSFSHSG 310 (389)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 310 (389)
.......++..++.++.|+++||+++|+. ....................++.... ...+.++....+.. ..
T Consensus 298 ~~~~~~~~~~~ig~~~~G~lsDr~g~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~ 369 (467)
T PRK09556 298 NTFTLFEIGALVGSLLWGWLSDLANGRRA-------LVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQ-LL 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCch-------HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHH-HH
Confidence 99998999999999999999999998832 22111111112222222222333222 22222222211111 11
Q ss_pred cchhhhcccc-cchhHHHHHHHHHhhh-hhhHHhHHHHHHHh------------hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 311 FLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVE------------LVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 311 ~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
......|..| +.+|++.|+.+..+++ |.+++|.+.|++.| ..| |...|.+..++.+++.+..+..
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 1234456666 7999999999999997 77999999999999 455 8899988888888776665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=290.75 Aligned_cols=353 Identities=18% Similarity=0.214 Sum_probs=259.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|+|++.+++.+++.+++++.|++.||+|||+++..+.++.+++.++++++ +|++.+++.|+++|++.+...|....+
T Consensus 43 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~ 120 (412)
T TIGR02332 43 TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--TGPESLYLLRILVGIAEAGFLPGILLY 120 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc------ccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+.|++|+++|++++++++...++|..+++.+++++.+ ..|||+.|++.+++.++..++.++..||+|++.+..+
T Consensus 121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~ 200 (412)
T TIGR02332 121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLD 200 (412)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCC
Confidence 9999999999999999999999999999999998864 3699999999988888776767667777776543222
Q ss_pred HHHHHHHHHhcCCcc---ccCC-C--CCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hccccc
Q 016442 156 KYELEYILREKQKPL---LMGN-K--HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV-YHIDLR 228 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~---~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 228 (389)
+++++...+..+.+. +..+ + +++......+++++ +|.+|...+..++....++.+.+|+|.++++. .|.++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~ 279 (412)
T TIGR02332 201 EEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI 279 (412)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 322222211111000 0000 0 00111122344444 68888888888888888999999999999883 367788
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhh-cc
Q 016442 229 QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKS-FS 307 (389)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 307 (389)
+++.+.....++..++.++.++++||+++|+ ... ..........+......+..........+ .+++. ..
T Consensus 280 ~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~ 350 (412)
T TIGR02332 280 MIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-------HHT-ALPYLFAAAGWLLASATDHNLIQLLGIIM-ASMGSFSA 350 (412)
T ss_pred HhHHHhhHHHHHHHHHHHHHHHHhcccCccH-------HHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhhhh
Confidence 8899999999999999999999999998762 111 11111222222211112222222211111 11111 11
Q ss_pred ccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHH
Q 016442 308 HSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY 366 (389)
Q Consensus 308 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 366 (389)
.+.......+..| ++|+++.|+.+...++|++++|.+.|.+.|..|+|...+.+.++..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 351 MAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 1222334455555 8999999999999999999999999999999887888887766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=290.08 Aligned_cols=368 Identities=17% Similarity=0.161 Sum_probs=265.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|++.+.+.+++.+++++.|++.||+|||+++.++.++.+++.++++++ +|++.+++.|++.|++.|...+...++
T Consensus 58 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~ 135 (434)
T PRK11663 58 SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS--SSLWAFALLWVLNAFFQGWGWPVCAKL 135 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 467899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+++|++++++.+.+.++|..+++.+.+.+.++.|||+.|++.+++.++..+...+..+|+|++.+....++.+.
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 215 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH 215 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999888777665555555555544321111000000
Q ss_pred HHHhcCCccccCCCCCCCCCchhHH-HhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFR-RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
+..+. ..+++.++.+.++.++ ..+++|.++...+..++....+....+|+|.|+++.+|+++.+++...+...++
T Consensus 216 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~ 291 (434)
T PRK11663 216 ---DALEL-AQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELG 291 (434)
T ss_pred ---ccccc-chhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 00000 0000000011111122 367789998888877777777888889999999887899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccc-cccchhhhccc
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH-SGFLVNLQEIA 319 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (389)
..+++++.|++.||+.++++.. .......+.......+..... .+... .....+..++....+ ........|..
T Consensus 292 ~~~g~~~~g~l~dr~~~~~r~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 366 (434)
T PRK11663 292 GFIGALVAGWGSDKLFNGNRGP---MNLIFAAGILLSVGSLWLMPF-ASYVM-QAACFFTIGFFVFGPQMLIGMAAAECS 366 (434)
T ss_pred HHHHHHHHhhhHHHhccCCccH---HHHHHHHHHHHHHHHHHHccc-ccHHH-HHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 9999999999999995432110 001111222222222222222 22222 112222222222211 12234456766
Q ss_pred c-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 016442 320 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGER 381 (389)
Q Consensus 320 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (389)
| ++|+++.|+.+...++|..++|.+.|++.|+.| +...|...+++.+++.+......|+++
T Consensus 367 ~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 367 HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6 799999999999999999999999999999988 889998888887777665554444333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=278.22 Aligned_cols=336 Identities=12% Similarity=0.065 Sum_probs=246.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|++.+.+.+++.+++++.|+++||+|||+++..+......+....... +|++.+++.|+++|++.+. .+.....
T Consensus 26 ~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~R~l~G~g~~~-~~~~~~~ 102 (368)
T TIGR00903 26 EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYEWLLACQLLAALGQPF-LLNAFAP 102 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhHhHH-HHHHHHH
Confidence 578999999999999999999999999999988766655554544333444 7899999999999999986 5666677
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
++|++|+|+|++++++.+.+..+|..+++.+++.+.++.|||+.|++.++++++..++.++..||+|+++++..+
T Consensus 103 ~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~----- 177 (368)
T TIGR00903 103 AASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG----- 177 (368)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc-----
Confidence 799999999999999999999999999999999999999999999999998888777777777776654321000
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
.++..+++++++|||.+|...+..++....++++.+|+|.|+++ .|++.+ .+.......+.+
T Consensus 178 ----------------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g 239 (368)
T TIGR00903 178 ----------------FKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAG 239 (368)
T ss_pred ----------------hHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHH
Confidence 00011357789999999999999999999999999999999987 578764 555555555544
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP- 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (389)
.++ .++++||..||+... ..........+.........++.........+...+.....+..+.+.+|..|
T Consensus 240 ~~g---~~~~~d~~~r~~~r~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 311 (368)
T TIGR00903 240 LIG---VAVIPDRVARAGLRS-----IYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK 311 (368)
T ss_pred HHH---HHHhhHHhhhhhhHH-----HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch
Confidence 444 578888887653211 11111122222222233333333332323332333333333446677888888
Q ss_pred cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016442 321 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI 374 (389)
Q Consensus 321 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (389)
+.|+++.|+.+..+++++..+|.+.+.+.. | ....|...+...+++.+...
T Consensus 312 ~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 312 ELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999998884 3 66777777777777766654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=282.45 Aligned_cols=345 Identities=12% Similarity=0.154 Sum_probs=259.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.++++ +|++.+++.|+++|++.+...+....+
T Consensus 44 ~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~r~l~Gig~~~~~~~~~~~ 121 (393)
T PRK09705 44 SVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSSALLGGVGIGIIQAVMPSV 121 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHHHHHHHhHHHHHhhhhhHH
Confidence 467899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc-CcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
+.|++| ++|+++++.++.+...|..+++.+++.+.++. +||+.+...++..++.....+...++.|++++
T Consensus 122 ~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 192 (393)
T PRK09705 122 IKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSH-------- 192 (393)
T ss_pred HHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--------
Confidence 999996 88999999999999999999999999988875 89998887766655443333333222221110
Q ss_pred HHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
+ ++. +.++.+++|+.+...+..++....+....++.|.|+++ +|.++.+++...+...++
T Consensus 193 --------------~-~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~ 252 (393)
T PRK09705 193 --------------K-TTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLG 252 (393)
T ss_pred --------------C-CCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHH
Confidence 0 000 11245677888887777777778888899999999988 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-hccchhhHHHHHHHHHhhhhccccccchhhhccc
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
.++++++.+++.||.++|+ .. ..+............ ..++... ....+.+.+.+...+.......++.+
T Consensus 253 ~i~g~~~~g~l~~r~~~~~-------~~--~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~ 322 (393)
T PRK09705 253 QAAGALLMPAMARHQDRRK-------LL--MLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGLGGAFPLCLLLALDHSV 322 (393)
T ss_pred HHHHHHHHHHHHhhccchH-------HH--HHHHHHHHHHHHHHHHccchHHH-HHHHHHHHhccchHHHHHHHHHhhcC
Confidence 9999999999999998872 22 222222222222221 1222111 22223333333333322223344454
Q ss_pred c-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh-ccCCccccccc
Q 016442 320 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF-STGERVNFDEA 387 (389)
Q Consensus 320 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 387 (389)
| +++++..|+.+...+++..++|.+.|++.|+.|++...|.+.+++.+++......+ ++++++++.+|
T Consensus 323 ~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK09705 323 QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWVKE 392 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhccc
Confidence 4 68999999999999999999999999999999888888888877777666554443 44444444443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=280.24 Aligned_cols=372 Identities=17% Similarity=0.243 Sum_probs=257.7
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.+++.. .++++.+++.|+++|++.+...+...
T Consensus 63 ~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~ 142 (452)
T PRK11273 63 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 142 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHH
Confidence 5678899999999999999999999999999999999999999998887751 13788899999999999999888888
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhh-hhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHH
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNA-IGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 158 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
..+.|++|+++|++++++++.+.++|.. .+|.++..+....+||+.|++.+++.++..++..+..+|+|++....++++
T Consensus 143 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (452)
T PRK11273 143 RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEE 222 (452)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhh
Confidence 8999999999999999999999999864 455544444344599999999988877766666666666655422111111
Q ss_pred HHHHHHhcCCccccCCCCCCCCCchh-HHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHH
Q 016442 159 LEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVP 237 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (389)
.+ ++.+.. ..++++++.+.++. .+.++|+|.+|...+..++.....+....++|.|++++.|++..+++......
T Consensus 223 ~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~ 298 (452)
T PRK11273 223 YK---NDYPDD-YNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 298 (452)
T ss_pred hh---hccccc-cccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 10 000000 00000111111122 23477899999988888888888888899999999998899999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccc-cccchhhh
Q 016442 238 WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH-SGFLVNLQ 316 (389)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 316 (389)
.++..++.++.|+++||+++++... .......+...+.........++...... .++..+...... ........
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 373 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGA----TGVFFMTLVTIATIVYWLNPAGNPTVDMA-CMIVIGFLIYGPVMLIGLHAL 373 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcch----HHHHHHHHHHHHHHHHHHhcccChHHHHH-HHHHHHHHHHhHHHHHHHHHH
Confidence 8999999999999999996432110 01111111111221121222222222222 122222211111 12223445
Q ss_pred cccc-cchhHHHHHHHHHhhhhhhH-HhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 016442 317 EIAP-QYSGVLHGISNTAGTFAAIL-GTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVN 383 (389)
Q Consensus 317 ~~~~-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (389)
|..| +.||+++|+.+...++|+.+ +|.+.|++.|+.| +...|.+.+.+++++++......+.++++
T Consensus 374 ~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 441 (452)
T PRK11273 374 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEKRH 441 (452)
T ss_pred HHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 6666 79999999999999998765 7999999999998 88998888887777776666554444443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=277.73 Aligned_cols=344 Identities=22% Similarity=0.191 Sum_probs=256.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.++..+++++.|+++||+|||+++..+..+..++.+++.++ +|++.+++.|+++|++.+...+...++
T Consensus 50 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~ 127 (406)
T PRK11551 50 AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--WDFPSLLVARLLTGVGLGGALPNLIAL 127 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+.+..+|..+++.+++.+.+..+||+.|++.++..++..+......||++++.++.+++
T Consensus 128 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---- 203 (406)
T PRK11551 128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG---- 203 (406)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc----
Confidence 9999999999999999999999999999999988888889999999988776666655555556654322110000
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhc---chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLS---KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 238 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (389)
++++ ...+..++ +++.+......++.....+....+.|.++++ .|+++.+.+.......
T Consensus 204 --------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~ 265 (406)
T PRK11551 204 --------------KQRA---PVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFN 265 (406)
T ss_pred --------------hhhh---hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHH
Confidence 0000 01112222 2233344444455555666778889999988 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcc
Q 016442 239 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 239 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
++.++++++.|++.||+++| .............+......++.+......++.........+....+..+.
T Consensus 266 ~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (406)
T PRK11551 266 IGGALGSLLIGALMDRLRPR---------RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLF 336 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999988 222223333333333333333333322222222222222334455666666
Q ss_pred cc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 319 AP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 319 ~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
.| ++|+++.|+.+...+++..++|.+.|.+.|+.+++...+.....+.+++.+..+...+
T Consensus 337 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 337 YPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred cchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66 8999999999999999999999999999998776777777776666666655554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=279.55 Aligned_cols=349 Identities=17% Similarity=0.146 Sum_probs=236.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHH--------HHHHHHHhhhhhccchhhhH
Q 016442 8 PSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA--------LLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 8 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~ 79 (389)
.++..+++.+++++.|+++||+|||+++.++.+++++++++++++ +|++. +++.|+++|++.|...+...
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~ 140 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGAS 140 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHH
Confidence 467778999999999999999999999999999999999999999 99875 89999999999999999999
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh--------cccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
++++|++|+|+|+++.++.+.+..+|..+++.+...+. +.+|||+.|++.+++.++. +......||+|+..
T Consensus 141 ~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~ 219 (490)
T PRK10642 141 IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQ 219 (490)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHH
Confidence 99999999999999999999988889888887665442 2579999999977655543 33334455554421
Q ss_pred CcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcc-hhHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhccccch
Q 016442 152 PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-MPTWS-IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ 229 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (389)
++.++ ..+.. ++..+++...++++++++ ++.+. .....++....++....+.|.|+++.+|++..+
T Consensus 220 ~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~ 287 (490)
T PRK10642 220 QHVDK-----LEQGD-------REGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDH 287 (490)
T ss_pred HHHHh-----hhhhc-------cccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 11000 00000 000011122345566653 23222 223334455677888899999998878998888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhh---HHHHHHHHHhhccchhhHHHHHHHHHhhhhc
Q 016442 230 ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI---APGIALIGLTAAKSPVMASAWLTLAIGMKSF 306 (389)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
.+.......++..++.++.|+++||+|||+ ....+.+ ............++........++.....+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 358 (490)
T PRK10642 288 GVLIIIAIMIGMLFVQPVMGLLSDRFGRRP---------FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC 358 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 887777788888999999999999999982 2222221 1111112222222222222222222222222
Q ss_pred cccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016442 307 SHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 380 (389)
Q Consensus 307 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
..+....+..+..| +.|+++.|+.+....+++.++|.+.+++.+..+++...+.+..+..+++.+..++.++.+
T Consensus 359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~ 433 (490)
T PRK10642 359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETA 433 (490)
T ss_pred HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33344455566777 899999998767677888999999999998765444444444555555555555555543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=272.31 Aligned_cols=339 Identities=17% Similarity=0.183 Sum_probs=252.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.+++.++++++|++.||+|||+++..+..+.+++.++++++ +|++.+++.|+++|++.+...+....+
T Consensus 38 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~ 115 (382)
T PRK10091 38 PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--SSYLMLAIGRLVSGFPHGAFFGVGAIV 115 (382)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999 999999999999999999888888999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+++|+++++....+..+|..++|.+++.+.+..+||+.|++.++..++..+...+..||.+++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-------- 187 (382)
T PRK10091 116 LSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG-------- 187 (382)
T ss_pred HHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc--------
Confidence 999999999999999999999999999999999999989999999999988777666555555554321110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+.++.+ +.+|+++.+......++..........+.+.++++..|+++.+.+.+.+...++.
T Consensus 188 ------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 248 (382)
T PRK10091 188 ------------------GLREQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGM 248 (382)
T ss_pred ------------------CHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 001122 4567777776666555555555566677788888778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH-hhccchh-hHHHHHHHHHhhhhccccccchhhhccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL-TAAKSPV-MASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
++++++.+++.||+++++ ....+....++..+.. ...+..+ ......+.+.+......+......++.+
T Consensus 249 ~ig~~~~g~l~~r~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (382)
T PRK10091 249 VLGNLLSGRLSGRYSPLR---------IAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAK 319 (382)
T ss_pred HHHhHHHheeccccCchh---------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 999999999999998872 2222223333322222 1222222 2222233333333333333333444444
Q ss_pred c-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016442 320 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 380 (389)
Q Consensus 320 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
+ +.++.+ ..+...++|.++||.+.|.+.|..++|+..+...++...+.........++|
T Consensus 320 ~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (382)
T PRK10091 320 GGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYK 379 (382)
T ss_pred cchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4 455544 3467788999999999999999866699998888777766666555544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=269.64 Aligned_cols=330 Identities=15% Similarity=0.134 Sum_probs=249.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|+..+.+.++..+++++.|++.||+|||+++..+..+.+++.+++.++ +|++.+++.|+++|++.+...+...++
T Consensus 55 ~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~ 132 (394)
T PRK10213 55 GVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLGLALGGFWAMSASL 132 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.....++|..++|.+++.+.+++|||+.|++.+++.++..+......||++++++
T Consensus 133 i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~--------- 203 (394)
T PRK10213 133 TMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS--------- 203 (394)
T ss_pred HHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc---------
Confidence 99999999999999999999999999999999999999999999999887776655444443444321110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+..++.++.+|+|+++...+..++.........++.+.++.+++|+++.+.+......+++.
T Consensus 204 ------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~ 265 (394)
T PRK10213 204 ------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIAS 265 (394)
T ss_pred ------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 01123457888999988777666666666666677644444457999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhccccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ 321 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (389)
.++.++.+++.||.+++ .+...........+......++.+......++.+.......+......++..|+
T Consensus 266 iig~~~~~~l~~r~~~~---------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~ 336 (394)
T PRK10213 266 FVGTSLSSFILKRSVKL---------ALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD 336 (394)
T ss_pred HHHHHHHHHHHhccchh---------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc
Confidence 99999999999985433 222222222222222222223333333333333333344455555556666677
Q ss_pred chhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 016442 322 YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA 370 (389)
Q Consensus 322 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 370 (389)
++++..+......++|..+||.+.|++.|..| +...+...++..++..
T Consensus 337 ~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 337 QAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTA 384 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHH
Confidence 77788888888889999999999999999987 7777777665554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=270.29 Aligned_cols=335 Identities=19% Similarity=0.192 Sum_probs=256.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+++.+++.+++++.|+++||+|||+++..+..+.+++.+.++++ +|++.+++.|+++|++.+...+.....
T Consensus 38 ~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 115 (377)
T TIGR00890 38 TAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--DSLAALYLTYGLASAGVGIAYGIALNT 115 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 467899999999999999999999999999999999999999999999999 999999999999999999888888889
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++| |+|++++++...+.++|..+++++.+.+.+..+||+.|++.+++.++..+..++..++++++.++.
T Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 187 (377)
T TIGR00890 116 AVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT------- 187 (377)
T ss_pred HHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcccc-------
Confidence 999996 689999999999999999888777777778889999999999988887777666655544321110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+++.++...+.++.+|+|+++...+..++..........+.+.|.++ +|.++.+.+...+...+..
T Consensus 188 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 253 (377)
T TIGR00890 188 -------------NIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFN 253 (377)
T ss_pred -------------CcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 00001112245678889988887777776666666666777777766 7888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc--hhhHHHHHHHHHhhhhccccccchhhhccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--PVMASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
.+++++.+++.||++||+ ....+..............+. .........+.....+...+.......|..
T Consensus 254 ~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 324 (377)
T TIGR00890 254 GGGRPFLGALSDKIGRQK---------TMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF 324 (377)
T ss_pred HHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHh
Confidence 999999999999999882 222333333333332222221 111212222222222233344455666766
Q ss_pred c-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 016442 320 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA 370 (389)
Q Consensus 320 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 370 (389)
| ++|+++.|+.+...++|..++|.+.|.+.|..| +...|.+.+++.+++.
T Consensus 325 ~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 325 GPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL 375 (377)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence 6 899999999999999999999999999999987 8888888777766543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=270.94 Aligned_cols=333 Identities=17% Similarity=0.154 Sum_probs=233.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchH--------HHHHHHHHhhhhhccchhhhH
Q 016442 8 PSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 8 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~ 79 (389)
.+...++..++++++|+++||+|||+++..+..++++++++++++ +|+. .+++.|+++|++.|..++...
T Consensus 69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~ 146 (432)
T PRK10406 69 FAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSA 146 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence 344445555999999999999999999999999999999999998 7764 589999999999999999999
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh--------cccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
++++|++|+++|+++.+..+.+...|..+++.+...+. +.+|||+.|++.+++.++... .....||+++.
T Consensus 147 ~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~- 224 (432)
T PRK10406 147 TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQ- 224 (432)
T ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchH-
Confidence 99999999999999999999988888888887765543 257999999988777665432 22223333211
Q ss_pred CcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHhccccchh
Q 016442 152 PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMH-SWGFFVILSWMPIYFNFVYHIDLRQA 230 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 230 (389)
+.+ ++ ++..++++++|+|+.+...+...+. ...++.+.+|+|.|+++.+|++..+.
T Consensus 225 ------~~~-------------~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~ 281 (432)
T PRK10406 225 ------ETR-------------AL----KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVA 281 (432)
T ss_pred ------HHh-------------hh----cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 000 00 0123567888898887766655443 66778888999999988889998888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH--HHH-HhhccchhhHHHHHHHHHhhhhcc
Q 016442 231 SWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA--LIG-LTAAKSPVMASAWLTLAIGMKSFS 307 (389)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 307 (389)
+...+...+...++..+.|+++||++||+ ... .......... ... ....++.........+..+.....
T Consensus 282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
T PRK10406 282 SGIMTAALFVFMLIQPLIGALSDKIGRRT-------SML-CFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFY 353 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchH-------HHH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999882 121 1111111111 111 111222222222222222222233
Q ss_pred ccccchhhhcccc-cchhHHHHHHHHHhhh-hhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 308 HSGFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 308 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+....+.+|.+| |.|+++.|+.+..++. .+...|.+.+.+ +..|++...+++.++..+++.+..+..
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788887 7999999999988775 344577777744 666656666666666666666555544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=268.41 Aligned_cols=339 Identities=16% Similarity=0.153 Sum_probs=252.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.+++.++ +|++.+++.|+++|++.+...+...++
T Consensus 42 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~ 119 (394)
T PRK03699 42 SSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSIAMFVLGVVSGITMSIGTFL 119 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHhhHhhccchhHH
Confidence 467889999999999999999999999999999999999999999999998 999999999999999999889999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-ccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
+.|++|+++|+++++..+....+|..++|.+.+.+.+ ..+||+.|.+.+++.++..+..++. +.|+.+++.++
T Consensus 120 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~---- 193 (394)
T PRK03699 120 ITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFS--EFPALGKHAPK---- 193 (394)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhc--CCccccccCcc----
Confidence 9999999999999999999999999999999887764 5799999999888776655444332 22221110000
Q ss_pred HHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
+++ +.. ++ ..+++++...+..++....++.+..|.|.|+++.+|+|+.+.+.+.+...++
T Consensus 194 ------------~~~---~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~ 253 (394)
T PRK03699 194 ------------ADK---PVA----KE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMA 253 (394)
T ss_pred ------------ccC---ccc----cc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHH
Confidence 000 000 01 1245677777777777777888899999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhH-HHHHHHHHhhhhccccccchhhhccc
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA-SAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
..+++++.+++.||+++|+. .. .........+..+...++.... ......+.+ .....+.......+..
T Consensus 254 ~~ig~~~~g~l~dr~~~~~~-------l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~ 323 (394)
T PRK03699 254 YMVGMWIFSFIVRFFDLQRI-------LT--VLAGLALVLMYLFVNTDDPSHLLYAILGLGFF-SSAIYTTIITLGSQQT 323 (394)
T ss_pred HHHHHHHHHHHHHHhchhhH-------HH--HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999998821 22 2222222222233233333222 222233322 2233344445566666
Q ss_pred ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 320 PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 320 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
|+.+++..|......++|..++|.+.|++.|..| +...++..+++.+++........+.
T Consensus 324 ~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 324 KVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred cCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7677888899999999999999999999999988 7777777777776665554444443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=279.51 Aligned_cols=367 Identities=16% Similarity=0.168 Sum_probs=262.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.+.+++.+++.++.+++++++|+++||+|||++++++.++.+++.++++++ ++++.++++|+++|++.++..+...++
T Consensus 202 ~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--~s~~~llv~R~l~G~g~g~~~p~~~~~ 279 (742)
T TIGR01299 202 SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFLFCRLLSGFGIGGAIPIVFSY 279 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-------------cCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------------AGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
+.|++|+++|++.+++.+.++.+|.++++.++..+... .+||+.+++.+++.++.. +..++.||+|
T Consensus 280 isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESP 358 (742)
T TIGR01299 280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESP 358 (742)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCH
Confidence 99999999999999999999999999999888766543 358999888877766654 4455567887
Q ss_pred CCC-CcCcHHHHHHHHHhcCCcc--------------------ccC---C-CCCCCC---------------CchhHHHh
Q 016442 149 DRH-PQISKYELEYILREKQKPL--------------------LMG---N-KHKPAT---------------VIPPFRRL 188 (389)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~~~~~~--------------------~~~---~-~~~~~~---------------~~~~~~~~ 188 (389)
+.. .+.+.++.....++..... ..+ + +.+... .+.+++++
T Consensus 359 rwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 438 (742)
T TIGR01299 359 RFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRC 438 (742)
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHH
Confidence 642 1222222222221111000 000 0 000000 01134455
Q ss_pred hcch---hHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----h-----------------ccccc----------------
Q 016442 189 LSKM---PTWSIIVANAMHSWGFFVILSWMPIYFNFV----Y-----------------HIDLR---------------- 228 (389)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----------------g~~~~---------------- 228 (389)
++.+ +.+.+++.+++..++++++..|+|.++++. + +++.+
T Consensus 439 f~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (742)
T TIGR01299 439 FNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIG 518 (742)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhc
Confidence 5443 456677788888899999999999886541 0 00000
Q ss_pred -----------------------------------------------------------------------------hhh
Q 016442 229 -----------------------------------------------------------------------------QAS 231 (389)
Q Consensus 229 -----------------------------------------------------------------------------~~~ 231 (389)
...
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 598 (742)
T TIGR01299 519 LKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIY 598 (742)
T ss_pred ccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHH
Confidence 012
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhcccccc
Q 016442 232 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 311 (389)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
....+..++.+++.++.++++||+||| .++..+.++.+++.+.+...++....+...++..++.....+..
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr---------~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~ 669 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRL---------RMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNAL 669 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556688899999999999999998 44455555555555544444443333333333333333445567
Q ss_pred chhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 016442 312 LVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 382 (389)
Q Consensus 312 ~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (389)
..++.|+.| +.|++++|+.+....+|.+++|.+.|.+.+.. ...++++.+++.+++.++...+++++++
T Consensus 670 ~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~~~ 739 (742)
T TIGR01299 670 DVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTRGQ 739 (742)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 788899988 79999999999999999999999999998762 5667777777777777776666655443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=272.36 Aligned_cols=354 Identities=18% Similarity=0.145 Sum_probs=253.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++ +|++.+++.|+++|++.+.. +....+
T Consensus 71 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~~~~-~~~~~~ 147 (476)
T PLN00028 71 SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRFFIGFSLATF-VSCQYW 147 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 466788889999999999999999999999999999999999999999999 99999999999999998864 445678
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc---------ccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCC
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP 152 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~---------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
++|++|+++|++++++.+...++|..+++.+.+.+.+ ..|||+.|++.+++.++..+..+++.+++|+...
T Consensus 148 i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~ 227 (476)
T PLN00028 148 MSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY 227 (476)
T ss_pred HHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch
Confidence 9999999999999999988888888777666654422 2489999999999888877776666555443221
Q ss_pred cCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhh
Q 016442 153 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW 232 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 232 (389)
++.+ ++ .+.++++....+++.++++++|...+..++.........++.|.|+.+.+|+++.+++.
T Consensus 228 ----~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~ 292 (476)
T PLN00028 228 ----RELK---KS--------GTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGA 292 (476)
T ss_pred ----hhHH---hc--------CccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHH
Confidence 0000 00 00011112235667788999988877777666666778889999998888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
+.+...+++.+++++.|+++||+++|+.... ++..........++....+...++........++.........+...
T Consensus 293 ~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~--r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 370 (476)
T PLN00028 293 IAASFGLMNLFARPAGGYLSDVAARRFGMRG--RLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATF 370 (476)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcCcch--hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999998743211 22233333333333333333333322222222222222222333445
Q ss_pred hhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 313 VNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 313 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+..+..|+++|++.|+.+..+++|..++|.+.+ .+..++|...|.+.+++.+++.++.++.+
T Consensus 371 ~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 371 GIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred ccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 5566778899999999998877777777766554 22233588899988888888877776654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=265.94 Aligned_cols=325 Identities=14% Similarity=0.086 Sum_probs=247.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.+.++ ++++.+++.|+++|++.+...+...++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~ 125 (406)
T PRK15402 48 EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--QSIEQFTLLRFLQGIGLCFIGAVGYAA 125 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhHhhhHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999998 999999999999999999888999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+++|.+.+++......+|..++|.+++.+.++.+||+.|++.++..++..+...+..||++++.++.
T Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 198 (406)
T PRK15402 126 IQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK------- 198 (406)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-------
Confidence 9999999999999999999889999999999999999899999999988888776665555555543221100
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
.+.++..+++++++++|+++...+..++..........+.|.++++.+|+++.+.+.......++.
T Consensus 199 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~ 264 (406)
T PRK15402 199 --------------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGAL 264 (406)
T ss_pred --------------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 001112345678899999988877777777666677778899988888999999998877777888
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH--HHHHHHHhh---ccchhhHH-HHHHHHHhhhhccccccchhh
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP--GIALIGLTA---AKSPVMAS-AWLTLAIGMKSFSHSGFLVNL 315 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 315 (389)
.++.++.+++.||+++| .....+.+.. +........ .++.+... ...+.+.+... ..+......
T Consensus 265 ~~g~~~~g~l~~r~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~-~~~~~~~~~ 334 (406)
T PRK15402 265 IAGNLTLARLTSRRPLR---------SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGL-ANAGLYRLT 334 (406)
T ss_pred HHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH-HhhhHHHHH
Confidence 89999999999999887 2222222222 222222211 12222222 22333333332 233333344
Q ss_pred hcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHH
Q 016442 316 QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL 359 (389)
Q Consensus 316 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 359 (389)
....|+++|++.+..+....++..+|+.+.+.+.+..+.+...+
T Consensus 335 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 378 (406)
T PRK15402 335 LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNL 378 (406)
T ss_pred hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence 44556899999999999999999999999999999887444333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=274.78 Aligned_cols=371 Identities=15% Similarity=0.118 Sum_probs=246.1
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccc------hHHHHHHHHHhhhhhccchh
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS------LLALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~ 76 (389)
+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.++++++ ++ ++.+++.|+++|++.+...+
T Consensus 57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence 45789999999999999999999999999999999999999999988887 55 78899999999999999999
Q ss_pred hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-----------------------ccCcchhHHHHhhHH
Q 016442 77 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-----------------------QAGIFGPFVIFGLSG 133 (389)
Q Consensus 77 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-----------------------~~~w~~~f~~~~~~~ 133 (389)
..+.+++|++|+++|++++++.+....+|..+++.++..+.. ..+||+.+.+.+++.
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~ 214 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA 214 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876532 237999998888777
Q ss_pred HHHHHHHHHhccCCCCCC---CcCcHHHHHHHHHhcCCc--cccCC--C--CCCCCCchhHHHhhcc---hhHHH----H
Q 016442 134 FLWVLVWLSATSSTPDRH---PQISKYELEYILREKQKP--LLMGN--K--HKPATVIPPFRRLLSK---MPTWS----I 197 (389)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~---~~~~~----~ 197 (389)
++..+. .+..||+|+.. ++.+++..+...+....+ .+.++ + ++++....++++++++ ++.+. .
T Consensus 215 ~i~~~~-~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (502)
T TIGR00887 215 LLALYF-RLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGT 293 (502)
T ss_pred HHHHHH-HHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHH
Confidence 665444 45568887742 221111111111111100 00000 0 0111122356677653 22211 1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhh------------hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW------------FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLT 265 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 265 (389)
....+.....+++...+.|.++++ .|+++.+.+. ......++.+++.++.+++.||+|||+
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~------ 366 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP------ 366 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh------
Confidence 223334445566777788999876 6887543221 123344566678889999999999992
Q ss_pred HHHHHHHHhhHHHHHHHHHh--hcc-chhhHHHHHHHHHhh-hhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhH
Q 016442 266 RKILQSIGFIAPGIALIGLT--AAK-SPVMASAWLTLAIGM-KSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAIL 340 (389)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~ 340 (389)
+...+....+++..... ... ..........+...+ .....+..+.+..|.+| +.|+++.|+.+.++++++++
T Consensus 367 ---~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~ 443 (502)
T TIGR00887 367 ---IQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII 443 (502)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHH
Confidence 22223222222222111 111 111111112222222 22234455677789998 79999999999999999999
Q ss_pred HhHHHHHHHhhhh---------hHHHHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 016442 341 GTVGAGFFVELVG---------SFQGFLLLTSLLYFLSALFYIIFSTGERVNFDE 386 (389)
Q Consensus 341 ~~~~~g~l~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (389)
+|.+.+++.|..+ ++...+.+.+++.+++.+..++++++++++.+|
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~lee 498 (502)
T TIGR00887 444 GQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEE 498 (502)
T ss_pred HHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHh
Confidence 9999999998531 145566667766666665555556666655444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=267.75 Aligned_cols=324 Identities=13% Similarity=0.092 Sum_probs=250.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhccc-----chHHHHHHHHHhhhhhccchh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT-----SLLALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~ 76 (389)
+++|++.+++.++..+++++.|+++||+|||+++..+..+..++.++..+. + |++.+++.|+++|++.+...+
T Consensus 34 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~g~~~~~~~~ 111 (365)
T TIGR00900 34 SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV--ALLGGLNIWQVYVLAGILAIAQAFFTP 111 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999988888877 6 999999999999999999999
Q ss_pred hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcH
Q 016442 77 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK 156 (389)
Q Consensus 77 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
...+++.|++|+++|++++++.+....+|..++|.+++.+.++.|||+.|++.++..++..+......+++++++++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQAL 191 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999988877666555444443322221111000
Q ss_pred HHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHhccccchhhhhhh
Q 016442 157 YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL-SWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
++ +..++..+.+++++|+|.++...+..++......... .+.|.+.++.+|.++.+.+....
T Consensus 192 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (365)
T TIGR00900 192 SN-----------------AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLA 254 (365)
T ss_pred ch-----------------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHH
Confidence 00 0001122356678899999888887777777776666 88899998878999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc-hhhHHHHHHHHHhhhhccccccchh
Q 016442 236 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS-PVMASAWLTLAIGMKSFSHSGFLVN 314 (389)
Q Consensus 236 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (389)
...++..++.++.+++.||.+++ .....+....+.........++ .+......++.....+...+....+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 325 (365)
T TIGR00900 255 AFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTL 325 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 3333333333333333333332 3333333333333333444555666
Q ss_pred hhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 315 LQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 315 ~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
..+..| ++|+++.|+.+...+++..++|.+.|.+.|+.|
T Consensus 326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 326 LQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 666655 899999999999999999999999999999754
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=262.66 Aligned_cols=338 Identities=16% Similarity=0.122 Sum_probs=251.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHH-HHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAW-GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+++|++.+++.+...+.+++.|+++||+||||.++. +.....++.++++++ +|++.+++.|+++|.+.+...|...+
T Consensus 33 ~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~p~~~~ 110 (375)
T TIGR00899 33 AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--RNYFLLLVLGVLLSSFASTANPQLFA 110 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 467889999999999999999999999999987654 556666777788888 99999999999999888888898899
Q ss_pred HHhcccCcCchhhH--HHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHH
Q 016442 81 MVARWFPQTERARA--VAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 158 (389)
Q Consensus 81 ~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+..|+.|+++|++. .+......++|..+||.+++.+.++.+||+.|++.++..++..+..++..||+|+++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (375)
T TIGR00899 111 LAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA---- 186 (375)
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc----
Confidence 99999887777754 688888899999999999999999999999999999887777666666566654332110
Q ss_pred HHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHH
Q 016442 159 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 238 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (389)
+ ...+.++.+++|+++......++..........+.|.|+++++|.++.+.+.......
T Consensus 187 -----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 245 (375)
T TIGR00899 187 -----------------L----TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAA 245 (375)
T ss_pred -----------------c----CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 0112334667777776666655555555666778899998888999999998887777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcc
Q 016442 239 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 239 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
....++.++.+++.||+++|+ ...................++.+.......+.....+...+....+.+|.
T Consensus 246 ~~~~~~~~~~g~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 316 (375)
T TIGR00899 246 GLEIPFMLLAGYLIKRFGKRR---------LMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDL 316 (375)
T ss_pred HHHHHHHHhHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888899999999999882 11222222222222222223333333332222222233344556677888
Q ss_pred cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 319 APQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 319 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.|++++++.|+.+...++|..++|.+.|.+.|..| ++..+...+++.+++.+.....
T Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 317 MPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhee
Confidence 88888899999999999999999999999999987 8888888888877777665443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=269.77 Aligned_cols=343 Identities=19% Similarity=0.224 Sum_probs=253.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+++.++..+++++.|+++||+|||+++..+..+.+++.+++.++ ++++.+++.|++.|++.+...+...++
T Consensus 30 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 107 (379)
T TIGR00881 30 TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--TSLWVMAALWALNGIFQGMGWPPCGRT 107 (379)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhccccCCchHHH
Confidence 578899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhh-hhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGL-VLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
+.|++|+++|++++++.+....+|..+++ .+++.+.+..+||+.|++.+++.++..+......+|++++.+..+.++.+
T Consensus 108 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T TIGR00881 108 VTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP 187 (379)
T ss_pred HHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc
Confidence 99999999999999999999999999999 57777777889999999988887776666666666655432211111100
Q ss_pred HHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
. ++ .+....+++++.+..+...++++|+|.++...+..++..........+.|.|+++.+|+++.+.+.......++
T Consensus 188 ~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 264 (379)
T TIGR00881 188 N--EE-PDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELG 264 (379)
T ss_pred c--cc-cccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0 00 00000001111122233466788999999988888888888888999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh--ccchhhHHHH-HHHHHhhhhccccccchhhhc
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA--AKSPVMASAW-LTLAIGMKSFSHSGFLVNLQE 317 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 317 (389)
.+++.++.+++.||..+++.. ................... ..+....... ...+.. .....+.......|
T Consensus 265 ~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 337 (379)
T TIGR00881 265 GLVGTLLAGWLSDKLFNGRRG------PLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFL-VYGPQMLIGVIASE 337 (379)
T ss_pred cchhHHHHHHHHHHHcCCcch------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH-HhhhhHHHHHHHHH
Confidence 999999999999997554221 1111111111122222211 1122222122 222221 22222233445566
Q ss_pred ccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHH
Q 016442 318 IAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG 357 (389)
Q Consensus 318 ~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 357 (389)
..| ++|+++.|+.+...+++..++|.+.|.+.|+.| ++.
T Consensus 338 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~ 377 (379)
T TIGR00881 338 LAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAG 377 (379)
T ss_pred hcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccc
Confidence 666 899999999999999999999999999999887 554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=269.61 Aligned_cols=351 Identities=16% Similarity=0.136 Sum_probs=252.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh---hcccchHHHHHHHHHhhhhhccchhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---AADTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.... ...++++.+++.|+++|++.+...+..
T Consensus 52 ~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 131 (417)
T PRK10489 52 LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTAL 131 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999988888777665432 112688999999999999998888999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHH
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 158 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
.+++.|+.|+++|+++.++.+...++|..+||.+++.+.+..+|++.|++.++..++..+..... |+.++++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~----- 205 (417)
T PRK10489 132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQP----- 205 (417)
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcc-----
Confidence 99999999999999999999999999999999999999988899999998887766655554443 333221110
Q ss_pred HHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHH
Q 016442 159 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 238 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (389)
++++.++..+.++..+++|.++...+..++... ......++|.|+++.+|.++.+.+.+.+...
T Consensus 206 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~ 269 (417)
T PRK10489 206 ---------------REHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVP 269 (417)
T ss_pred ---------------cccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHH
Confidence 000111122345677888887666555444332 4567788999999888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcc
Q 016442 239 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 239 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
++..++.++.+++.||.+++ .....+..........+...++.+......++.....+...+....+.++.
T Consensus 270 ~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 340 (417)
T PRK10489 270 LGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQ 340 (417)
T ss_pred HHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999875443 222233333333333333334333322222222222233334455667777
Q ss_pred cc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Q 016442 319 AP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTS-LLYFLSALFYIIFSTGERVNF 384 (389)
Q Consensus 319 ~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 384 (389)
.| +.||+++|+.+...++|..++|.+.|.+.|..| +...+...+ +..+++.+.....++.++++.
T Consensus 341 ~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 341 TPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred CCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 66 789999999999999999999999999999988 555555444 444445555555455444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=273.06 Aligned_cols=338 Identities=17% Similarity=0.140 Sum_probs=254.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.+|+.+.|.++..++.+++|+++||+|||+++..+..++.+++++++++ +|++.++++|+++|+|.+...+.....
T Consensus 41 ~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a--~~~~~li~~r~l~G~g~~~~~~~~~~~ 118 (495)
T PRK14995 41 NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS--PTASWLIATRALLAIGAAMIVPATLAG 118 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999 999999999999999999988888888
Q ss_pred Hhccc-CcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCC-cCcHHHH
Q 016442 82 VARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYEL 159 (389)
Q Consensus 82 i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (389)
+.+++ |+++|++++++.....++|..+||.+++.+.++.||||.|++...+.++..++..+..|+++++++ +.+..+.
T Consensus 119 l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~ 198 (495)
T PRK14995 119 IRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHA 198 (495)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhH
Confidence 87776 678999999999999999999999999999999999999999888887776666666666544322 1211110
Q ss_pred H----------HHHHhcCCccc-------------------cCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHH
Q 016442 160 E----------YILREKQKPLL-------------------MGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV 210 (389)
Q Consensus 160 ~----------~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (389)
. ...++...... ...+.+.+++..+ .+++|+|.++...+..++......+
T Consensus 199 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~ 277 (495)
T PRK14995 199 LMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVG 277 (495)
T ss_pred HHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHH
Confidence 0 00000000000 0001112223333 3688999988888888888888888
Q ss_pred HHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH---hhc
Q 016442 211 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL---TAA 287 (389)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 287 (389)
...+.|.|+++.+|+++.+++.......++..++.++.|++.||+++| .....+.....+....+ ...
T Consensus 278 ~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~---------~~~~~g~~~~~~~~~~l~~~~~~ 348 (495)
T PRK14995 278 FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR---------LVATGGMALSALSFYGLAMTDFS 348 (495)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999987 22233333333222222 122
Q ss_pred cchhh-HHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhh
Q 016442 288 KSPVM-ASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVEL 351 (389)
Q Consensus 288 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 351 (389)
++.+. .....+.+.+.+....+.......+.++++++.+.++.+...++|..+|+.+.|.+.++
T Consensus 349 ~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 349 TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23322 22333444444444434444445555568999999999999999999999999998753
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=264.49 Aligned_cols=338 Identities=14% Similarity=0.086 Sum_probs=234.9
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchH--------HHHHHHHHhhhhhccchhhhHHH
Q 016442 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 10 ~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+..++..+++++.|+++||+|||+++..+..++++++++++++ +|++ .+++.|+++|++.|..++....+
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 149 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALL 149 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 4456677889999999999999999999999999999999999 8887 58899999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh--------cccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCc
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ 153 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
+.|++|+|+|++..+..+.+..+|..++..+...+. +++|||+.|++.+++.++. .......||+|+..+
T Consensus 150 ~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~- 227 (438)
T PRK09952 150 AVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQ- 227 (438)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHH-
Confidence 999999999999999999999999999987776654 2579999999887765442 222222333332110
Q ss_pred CcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHhccccchhhh
Q 016442 154 ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW 232 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 232 (389)
+. ++. ++.+ +.....+.++++|+.+.... ..++.....+....+.|.|+++.+|++......
T Consensus 228 ----~~----~~~-------~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~ 290 (438)
T PRK09952 228 ----QQ----HEQ-------AAAK--KRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLN 290 (438)
T ss_pred ----HH----hhc-------cccc--ccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00 000 0000 01112334667777666544 445556677778899999998888888776555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH--HHH-h-hccchhhHHHHHHHHHhhhhccc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL--IGL-T-AAKSPVMASAWLTLAIGMKSFSH 308 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
.....++...++.++.|+++||++||+ ... .+.+...... ... . ..+.........++.....+...
T Consensus 291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 291 IGLLVGGLSCLTIPCFAWLADRFGRRR-------VYI--TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchH-------HHH--HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 555667777888899999999999882 122 2222211111 111 1 11222222222233223333344
Q ss_pred cccchhhhcccc-cchhHHHHHHHHHhh-hhhhHHhHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 309 SGFLVNLQEIAP-QYSGVLHGISNTAGT-FAAILGTVGAGFFVELV-GSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 309 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
+..+.+..|..| +.|+++.|+.+.... +++.++|.+.+++.|.. +++...+.+.+++.+++.+..+..+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 556677888888 799999999766654 89999999999999865 3477777777777777776665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=267.63 Aligned_cols=367 Identities=18% Similarity=0.256 Sum_probs=256.8
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
+|.|++.+++.++..+++++.|+++||+|||+.+..+..+.+++.++..+.. .++++.+.+.|++.|++.+...+...
T Consensus 61 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~ 140 (438)
T TIGR00712 61 GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCG 140 (438)
T ss_pred hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 5789999999999999999999999999999999999999999988776541 14677888999999999999999999
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-ccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHH
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 158 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
..+.|++|+++|++++++++.+.++|..+++.+.+...+ +.+||+.|++.+++.++..+..++..||+|++.+..+.++
T Consensus 141 ~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 220 (438)
T TIGR00712 141 RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEE 220 (438)
T ss_pred HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchh
Confidence 999999999999999999999999999999888765444 5689999999998888876666666666554321111110
Q ss_pred HHHHHHhcCCccccCCCCCCCCCchh-HHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHH
Q 016442 159 LEYILREKQKPLLMGNKHKPATVIPP-FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVP 237 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (389)
.+ ++.... ..++++++.+.++. .+.++|++.+|...+..++.....++..++.|.|+++..|+++.+++......
T Consensus 221 ~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 296 (438)
T TIGR00712 221 YR---NDYPDD-YNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLY 296 (438)
T ss_pred cc---cccccc-cccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHH
Confidence 00 000000 00000011111111 23478899999888887887778888889999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHH--HHhhccchhhHHHHHHHHHhhhhcccccc-chh
Q 016442 238 WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAIGMKSFSHSGF-LVN 314 (389)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 314 (389)
.+.+++++++.+++.||+++++.. ............... ......+.+... ...+..+.....+... ...
T Consensus 297 ~~~~~ig~~~~g~l~dr~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~ 369 (438)
T TIGR00712 297 EYAGIPGTLLCGWMSDKVFKGNRG------ATGVFFMTLVTIAVIVYWMNPAGNPLVDM-ICMIVIGFLIYGPVMLIGLH 369 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccCccc------HHHHHHHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHHHHccHHHHHHHH
Confidence 999999999999999999765321 111111111111111 111112222221 1122222221111111 234
Q ss_pred hhcccc-cchhHHHHHHHHHhhhhh-hHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016442 315 LQEIAP-QYSGVLHGISNTAGTFAA-ILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 380 (389)
Q Consensus 315 ~~~~~~-~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
..|..| +.|+++.|+.+...++++ .++|.+.|.+.|+.| +...+.+..+..+++.+..+.+.+++
T Consensus 370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456656 799999999999988875 689999999999987 88888877777666666555544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=267.44 Aligned_cols=347 Identities=14% Similarity=0.124 Sum_probs=240.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++.++ ++++.+++.|+++|++.+...+...++
T Consensus 47 ~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~ 124 (405)
T TIGR00891 47 VDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA--PGYITMFIARLVIGIGMGGEYGSSAAY 124 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 578999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC--cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcH-HH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK-YE 158 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (389)
+.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||+.|++.++..++..+ .....||+++..++.++ ++
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 203 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKAL 203 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhh
Confidence 9999999999999999999999999999999999888766 99999887665555433 33333444322111111 00
Q ss_pred HHHHHHhcCCccccCCCCCCCCCchhHHHhhcc-h-hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhH
Q 016442 159 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-M-PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 236 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (389)
.+...++....... .+...++.....++..++ + .+........+..........++|.|+++++|+++.+.+.+.+.
T Consensus 204 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 282 (405)
T TIGR00891 204 VRTMVDILYGGEHR-IANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVF 282 (405)
T ss_pred hhhHHHHHhccchh-hhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHH
Confidence 00000000000000 000000011111111111 1 12223333344445555677889999988889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH-HHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhh
Q 016442 237 PWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP-GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNL 315 (389)
Q Consensus 237 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
..++.+++.++.+++.||+++|+. ...+.... ..........++.+.......+.........+......
T Consensus 283 ~~~~~~~g~~~~g~l~dr~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (405)
T TIGR00891 283 SNIGAIVGGCVFGFLGDWLGRRKA---------YVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHL 353 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhh---------hHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHH
Confidence 999999999999999999998832 12222222 11111222223333222222222222223334445566
Q ss_pred hcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHH
Q 016442 316 QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLL 361 (389)
Q Consensus 316 ~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 361 (389)
.|..| ++|+++.|+.+...+++..++|.+.|.+.|+.|+|...+..
T Consensus 354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 67666 79999999999999999999999999999998877665554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=249.71 Aligned_cols=344 Identities=17% Similarity=0.235 Sum_probs=287.6
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccchhhhH
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
++|.+++.++..+...+..++.|.+.||+|.|++...+.++..+-++..+++. .+|++++++.+.+.|++.+ ......
T Consensus 48 ~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m 126 (417)
T COG2223 48 EGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGM 126 (417)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehccc
Confidence 36889999999999999999999999999999999999999999999998884 2456699999999999954 688889
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC---cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcH
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK 156 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+++++|+|||++|.++|+.. ..|+|..+...++..+....+ ||....+..+..++..+..++...+.|+..+..
T Consensus 127 ~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-- 203 (417)
T COG2223 127 PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-- 203 (417)
T ss_pred ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc--
Confidence 99999999999999999999 999999999999999998888 999999999988888888888877776542210
Q ss_pred HHHHHHHHhcCCccccCCCCCCCCCc-hhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh
Q 016442 157 YELEYILREKQKPLLMGNKHKPATVI-PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
++.. ..++.++++|+.|.+.+.++....++.++..++|.|+++++|.++.+++.+..
T Consensus 204 ----------------------~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~ 261 (417)
T COG2223 204 ----------------------KPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAF 261 (417)
T ss_pred ----------------------cccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 0111 46778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc-------cchhhHHHHHHHHHhhhhccc
Q 016442 236 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-------KSPVMASAWLTLAIGMKSFSH 308 (389)
Q Consensus 236 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 308 (389)
.....+.+.+.++|+++||+|.+| ... ..+..+.++....... .+.......++....+.+..+
T Consensus 262 ~f~~~g~l~Rp~GG~LsDR~Gg~r-------v~~--~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~Gn 332 (417)
T COG2223 262 LFPLIGALARPLGGWLSDRIGGRR-------VTL--AVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGN 332 (417)
T ss_pred HHHHHHHHHHhccchhhhhccchh-------HHH--HHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCc
Confidence 999999999999999999999882 222 2222333322222221 223344444555556667788
Q ss_pred cccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 309 SGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 309 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
......+...+|++.|.+.|+....+.+|+..-|...|...|.+|++...|++...+.+++.+..+..+.+
T Consensus 333 Gsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 333 GSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred chheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999988888888766655443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=261.67 Aligned_cols=344 Identities=14% Similarity=0.121 Sum_probs=252.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh-hc-ccchHHHHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-AA-DTSLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
+|.|++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+++.. .. .++++.+++.|+++|++.+...+...
T Consensus 48 ~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~ 127 (402)
T TIGR00897 48 QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFL 127 (402)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHH
Confidence 57899999999999999999999999999999999999999988775532 11 15788899999999999888888888
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhh-hhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHH
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGN-AIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYE 158 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (389)
+.+.|++|+|+|++++|+.+...++|. .++|.+++.+.+..||+..++.......+..++..+..++.++++++.+
T Consensus 128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 204 (402)
T TIGR00897 128 VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQT--- 204 (402)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcccccC---
Confidence 899999999999999999999999997 6899999999888897766555444333333334444343322111000
Q ss_pred HHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHH
Q 016442 159 LEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 238 (389)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (389)
+++.++.++++++++|+|+++...+..++.....+...++.|.|+++ +|+++.+.+.+.....
T Consensus 205 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~ 267 (402)
T TIGR00897 205 ----------------REKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFF 267 (402)
T ss_pred ----------------CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHH
Confidence 00111123356788999999988888888888888889999999877 7999999999888889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHH---HHHHHHhh--ccchhh-HHHHHHHHHhhhhccccccc
Q 016442 239 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG---IALIGLTA--AKSPVM-ASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 239 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 312 (389)
++..++.+..|+++||+++|+. .. ....+..+ ..+..... .++.+. .....+.+.+.... .+ ..
T Consensus 268 ~~~~ig~~~~g~l~dr~~~~~~-------~~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~-~~ 337 (402)
T TIGR00897 268 FTNIVFNVIFGIVGDKLGWMNT-------VR-WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY-VP-LA 337 (402)
T ss_pred HHHHHHHHHHHHHHHhhcchhH-------HH-HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-HH-HH
Confidence 9999999999999999997732 11 11111111 11111111 122222 22333334333332 22 33
Q ss_pred hhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 313 VNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 313 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
....+..|++|+++.|+.+...++++.++|.+.|.+.|..| +...+++.+++.+++.+...+.
T Consensus 338 ~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 338 AVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888899999999999999999999999999999988 7788888887777776665554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=268.15 Aligned_cols=331 Identities=15% Similarity=0.145 Sum_probs=235.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.+++.+++.+++.+++++.|+++||+|||+++..+..+.+++.++++++ ++++.+++.|+++|++.+...+....+
T Consensus 53 ~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~ 130 (426)
T PRK12307 53 MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA--SGVIMLTLSRFIVGMGMAGEYACASTY 130 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+.+.++|.++++.+.+.+.+..+||+.|++.....++. .......||+++.. ++ .
T Consensus 131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~-~~~~~~~p~~~~~~-----~~--~ 202 (426)
T PRK12307 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLV-IYIRARAPESKEWE-----EA--K 202 (426)
T ss_pred HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH-HHHHHHCCCChHHH-----Hh--h
Confidence 9999999999999999999999999999999999988899999998754433222 11111112221100 00 0
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA---MHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 238 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (389)
..++ . ++++...+....++++++++|+++....... ........+..++|.|+++ .|.++.+.+...+...
T Consensus 203 ~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 276 (426)
T PRK12307 203 LSGK--G---KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAA 276 (426)
T ss_pred hhcc--c---cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 0000 0 0001111112235778888887765433222 2222334567889999988 5999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-hccchhhHHHHHHHHHhhhh-ccccccchhhh
Q 016442 239 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AAKSPVMASAWLTLAIGMKS-FSHSGFLVNLQ 316 (389)
Q Consensus 239 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 316 (389)
++.++++++.+++.||++|| .....+............ .............++.+... ...+.......
T Consensus 277 ~~~~~g~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (426)
T PRK12307 277 FGTVLGNIVWGLCADRIGLK---------KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLY 347 (426)
T ss_pred HHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 99999999999999999988 222233322222222221 12222222222223322221 11233445566
Q ss_pred cccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHH
Q 016442 317 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF 358 (389)
Q Consensus 317 ~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 358 (389)
|..| +.||++.|+.+...++++.++|.+.|++.|+.| +...
T Consensus 348 ~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~ 389 (426)
T PRK12307 348 DYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA 389 (426)
T ss_pred HhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence 7777 789999999999999999999999999999987 5443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=270.83 Aligned_cols=363 Identities=17% Similarity=0.116 Sum_probs=252.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++ +|++.+++.|++.|++.+...+...++
T Consensus 127 ~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~ 204 (505)
T TIGR00898 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFRLLVGMGIGGIWVQAVVL 204 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhccchHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-CcCcHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (389)
+.|++|+++|+++.++.+.+..+|.++++.++..+.+ ||+.+++.+++.++..+.. +..||+|+.. .+.+.++..
T Consensus 205 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~ 280 (505)
T TIGR00898 205 NTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEAL 280 (505)
T ss_pred hheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHH
Confidence 9999999999999999999999999999998877643 9999999998887766665 4556766532 112222221
Q ss_pred HHHHh----cCCccc-----c--CCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccch
Q 016442 161 YILRE----KQKPLL-----M--GNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ 229 (389)
Q Consensus 161 ~~~~~----~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (389)
+..++ ...... . +++.+++..+.++++++++|+++...+......+.........+.+..+ .+.+..
T Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 358 (505)
T TIGR00898 281 KILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-LGGNIY- 358 (505)
T ss_pred HHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCChH-
Confidence 11111 000000 0 0000111123467889999988877666555444443333333333333 344432
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc--hhhHHHHHHHHHhhhhcc
Q 016442 230 ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--PVMASAWLTLAIGMKSFS 307 (389)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 307 (389)
......++..+++.++.+++.||+||| .......+..++..+.....+. .+......++..+.....
T Consensus 359 --~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (505)
T TIGR00898 359 --LDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSA 427 (505)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Confidence 233345677788899999999999988 3333334444443333332222 233333333333333344
Q ss_pred ccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 016442 308 HSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDE 386 (389)
Q Consensus 308 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (389)
.+..+.+..|..| +.|+++.|+.+....+|++++|.+.+ +.+ .+ ....+.+.+++.+++.+...+++++++++.+|
T Consensus 428 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 428 FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence 4556677888888 79999999999999999999999999 443 34 45666666777766666666677666655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=259.95 Aligned_cols=339 Identities=21% Similarity=0.179 Sum_probs=238.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc------ccchHHHHHHHHHhhhhhccch
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA------DTSLLALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~~ 75 (389)
++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.++. ..+++.+++.|+++|++.+...
T Consensus 51 ~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 130 (399)
T PRK05122 51 FLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAG 130 (399)
T ss_pred HHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhc
Confidence 5678999999999999999999999999999999999998888776655431 0256789999999999999999
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+...+++.|+.|+|+|++++++.+....+|..+|+.+++.+.++.|||+.+++.++..++..... .+ .|+++++.
T Consensus 131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~- 205 (399)
T PRK05122 131 TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVK- 205 (399)
T ss_pred chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCC-
Confidence 99999999999999999999999999999999999999999999999998887666544332222 11 11111100
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
+ + +.++++.+| +.+.......+....+.....+.|.|+++ .|. .+.+....
T Consensus 206 -------------------~-~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 256 (399)
T PRK05122 206 -------------------G-E----RLPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALT 256 (399)
T ss_pred -------------------c-c----chhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHH
Confidence 0 0 012223332 12222233334455566677788888876 465 34566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHH-HHHHHHhhhhccccccchh
Q 016442 236 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA-WLTLAIGMKSFSHSGFLVN 314 (389)
Q Consensus 236 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 314 (389)
...++.+++++..+++.||+++| .....+....+.........++.+.... ..+.+.+..... +.....
T Consensus 257 ~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~-~~~~~~ 326 (399)
T PRK05122 257 LFGVAFVGARLLFGNLINRLGGL---------RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVF-PALGVE 326 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHH-HHHHHH
Confidence 77888889999999999999877 2222333333333333333333333332 233333333332 333333
Q ss_pred h-hcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Q 016442 315 L-QEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFD 385 (389)
Q Consensus 315 ~-~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (389)
. ++.++++||++.|+.+...++|..++|.+.|.+.|+.| ++..+...+++.+++.+.....+++++++.+
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 3 34445899999999999999999999999999999987 8899988888888877776666555444433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=269.87 Aligned_cols=356 Identities=17% Similarity=0.160 Sum_probs=255.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHH-HHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA-MRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~ 80 (389)
++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++ ++++.+++ .|+++|++.+...+...+
T Consensus 54 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~G~~~~~~~~~~~~ 131 (455)
T TIGR00892 54 SETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS--SNVIELYLTAGFITGLGLAFNFQPSLT 131 (455)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 577889999999999999999999999999999999999999999999998 99998865 579999999887777888
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
++.|+++ ++|++++++.+.+..+|..++|.+++.+.+..|||+.|++.+++.++..+..++..+++++++....+++ +
T Consensus 132 ~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~ 209 (455)
T TIGR00892 132 MLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-E 209 (455)
T ss_pred HHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-c
Confidence 9999995 7999999999999999999999999999999999999999998887666555555443322111000000 0
Q ss_pred HHHHhcCCccccCCC----CCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhH
Q 016442 161 YILREKQKPLLMGNK----HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 236 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (389)
. ..+.....+.+ .++..+..++ +++++|+++......++...+......++|.|.++ .|+++.+++.+.+.
T Consensus 210 ~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~ 284 (455)
T TIGR00892 210 G---LPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSI 284 (455)
T ss_pred c---CCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 0 00000000000 0000111122 57789999988888888888888888899999987 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHH-HHHHHHhhhhccccccchhh
Q 016442 237 PWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA-WLTLAIGMKSFSHSGFLVNL 315 (389)
Q Consensus 237 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 315 (389)
.+++.++++++.+++.||...++. +......+....+...+.....++.+.... ..+.+.+ .+...+......
T Consensus 285 ~~~~~~~~~~~~g~l~d~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~-~g~~~~~~~~~~ 358 (455)
T TIGR00892 285 IGFVDIFARPSCGLIAGLKWIRPH-----VQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLS-FGSVGALLFEVL 358 (455)
T ss_pred HHHHHHHHHHHHHHHhcccccCHH-----HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-hchHHHHHHHHH
Confidence 999999999999999997321100 122223333333333333333333333333 3333333 333334445555
Q ss_pred hcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 016442 316 QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALF 372 (389)
Q Consensus 316 ~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 372 (389)
.+..| ++++++.|+++...++|.+++|.+.|.+.|..|++...|...+++.+++.+.
T Consensus 359 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 359 MDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 55554 7899999999999999999999999999998876888888877776665553
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=270.07 Aligned_cols=363 Identities=18% Similarity=0.097 Sum_probs=246.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
++.|++.+++.++..++++++|+++||+|||+++..+..+..++.+++.+.. ..+++.+++.|+++|++.+...+...+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 150 (481)
T TIGR00879 71 SLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHH
Confidence 5788999999999999999999999999999999999999999999885541 145668999999999999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhh---hHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-CcCcH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLS---PILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISK 156 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~---~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (389)
+++|++|+++|++++++.+.+..+|..+++.++ ....+..+||+.|++.++..++..+.. ++.||+|+.. ++.+.
T Consensus 151 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~ 229 (481)
T TIGR00879 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRV 229 (481)
T ss_pred HHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCCh
Confidence 999999999999999999999999999999999 666677899999999666555544443 4445554321 11111
Q ss_pred HHHHHHHHhcCCcccc----------------CCCCCCCCCchhHHHhhc---chhHHHHHHHHHHHHHHHHHHHHhhhH
Q 016442 157 YELEYILREKQKPLLM----------------GNKHKPATVIPPFRRLLS---KMPTWSIIVANAMHSWGFFVILSWMPI 217 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (389)
++.+...++....... .+.+..++...+.++..+ .+.++...+..+...........+.|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (481)
T TIGR00879 230 EEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPT 309 (481)
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHH
Confidence 1111111100000000 000000111112222222 222333333333333334455667777
Q ss_pred HHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-----hcc----
Q 016442 218 YFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-----AAK---- 288 (389)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---- 288 (389)
+.++ .|++..+.+.......++.+++.++.+++.||+++|+ ....+............ ..+
T Consensus 310 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (481)
T TIGR00879 310 IFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP---------LLLIGAAGMAICLFVLGILGASFVTGSSK 379 (481)
T ss_pred HHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---------HHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 7766 7999988888888899999999999999999999882 22222333333222221 111
Q ss_pred --chhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 289 --SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 289 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
.........++..++.....+....+..|..| +.|+++.|+.+...+++.+++|.+.+.+.++.| +...|++.+++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~ 458 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGGL 458 (481)
T ss_pred chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHHH
Confidence 12222223333333343444556667688877 799999999999999999999999999999877 77777777777
Q ss_pred HHHHHHHHHHh
Q 016442 366 YFLSALFYIIF 376 (389)
Q Consensus 366 ~~~~~~~~~~~ 376 (389)
.+++.+.....
T Consensus 459 ~~~~~i~~~~~ 469 (481)
T TIGR00879 459 NVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHhee
Confidence 76666655443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=265.47 Aligned_cols=363 Identities=16% Similarity=0.136 Sum_probs=236.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc----------ccchHHHHHHHHHhhhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA----------DTSLLALLAMRAVVGLAE 71 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~~~ 71 (389)
++.+++.+++.++..++++++|+++||+|||+++..+..++.++.+.+++.. .++++.+++.|+++|++.
T Consensus 55 ~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (479)
T PRK10077 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGV 134 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhH
Confidence 4678999999999999999999999999999999999999999888776530 123567889999999999
Q ss_pred ccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh--------cccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 72 GVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 72 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
|...+...++++|++|+++|++++++.+.+..+|..+++.+++.+. ++.|||+.|++.+++.++..+.. +.
T Consensus 135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~-~~ 213 (479)
T PRK10077 135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL-YF 213 (479)
T ss_pred hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH-Hc
Confidence 9999999999999999999999999999999999999988776543 35689999999888777765544 44
Q ss_pred ccCCCCCC-CcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhc-----chhHH-----HH----HHHHHHHHHHH
Q 016442 144 TSSTPDRH-PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLS-----KMPTW-----SI----IVANAMHSWGF 208 (389)
Q Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~----~~~~~~~~~~~ 208 (389)
.||+|+.. .+.+.++.+...++..... +.++..++.++..+ .+..+ .. ....+....+.
T Consensus 214 l~~s~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (479)
T PRK10077 214 VPETPRYLMSRGKQEQAEGILRKIMGNT------LATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGI 287 (479)
T ss_pred CCCCcHHHHHcCCHHHHHHHHHHHcCCh------hHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhCh
Confidence 56665432 1112222222211111100 00000011111111 01110 00 01111111223
Q ss_pred HHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH--h-
Q 016442 209 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--T- 285 (389)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 285 (389)
+...++.|.+.++ .|.+...........++...++.++.+++.||++|| .+...+.....+....+ .
T Consensus 288 ~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r---------~~~i~~~~~~~v~~~~l~~~~ 357 (479)
T PRK10077 288 NVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSLGTAF 357 (479)
T ss_pred hHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---------HHHHHhHHHHHHHHHHHHHHH
Confidence 3445566777666 688877777777778888999999999999999988 33333333333332222 1
Q ss_pred hccch--hhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHH------hhhhhHH
Q 016442 286 AAKSP--VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV------ELVGSFQ 356 (389)
Q Consensus 286 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~ 356 (389)
..+.. .......+...++.....+..+.+..|..| ++|+++.|+.+...+++..+++.+.+.+. |..+ +.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~ 436 (479)
T PRK10077 358 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NG 436 (479)
T ss_pred hcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-Cc
Confidence 11211 112222223333333334566788888887 79999999999999999999987776554 4555 45
Q ss_pred HHHHHHHHHHHHHHHHHH-HhccCCcc
Q 016442 357 GFLLLTSLLYFLSALFYI-IFSTGERV 382 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ 382 (389)
..|.+.++..+++.+..+ ..++++++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 437 FSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 566666655555555443 33444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=266.96 Aligned_cols=339 Identities=17% Similarity=0.146 Sum_probs=257.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.++++++ +|++.+++.|+++|++.+...+...++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~ 114 (485)
T TIGR00711 37 SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLELMIIFRVIQGFGGGPLIPLSFST 114 (485)
T ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCC-cCcHHHH-
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP-QISKYEL- 159 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 159 (389)
+.|++|+++|++++++++....+|..+||.+++++.++.+||+.|++.+.+.++..+...+..|+++++.+ +.+....
T Consensus 115 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 194 (485)
T TIGR00711 115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLL 194 (485)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999888887776666666555433221 1111100
Q ss_pred ---------HHHHHhcCCccccC--------------------CCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHH
Q 016442 160 ---------EYILREKQKPLLMG--------------------NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFV 210 (389)
Q Consensus 160 ---------~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (389)
....++.++....+ .+.+++++..+ .+++|+|+++...+..++.....+.
T Consensus 195 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
T TIGR00711 195 LLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYG 273 (485)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHH
Confidence 00000100000000 00111112222 2678899998888888888888888
Q ss_pred HHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh--hc-
Q 016442 211 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--AA- 287 (389)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 287 (389)
...+.|.|+++.+|+++.+++.......++..++.++.+++.||+++| .....+............ ..
T Consensus 274 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~g~~~~~~~~~~~~~~~~~ 344 (485)
T TIGR00711 274 SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR---------KLVTIGLILYAVGFYWRAFTFTP 344 (485)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH---------HHHHHHHHHHHHHHHHHhccCCC
Confidence 899999999998999999999999999999999999999999999988 333334444443333332 11
Q ss_pred -cchhhH-HHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 288 -KSPVMA-SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 288 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
.+.+.. ....+.+.+.+....+......++.++++++++.|+.+...++|+.+|+.+.|.+.++.
T Consensus 345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 22233344443333344444455555689999999999999999999999999998853
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=256.73 Aligned_cols=319 Identities=17% Similarity=0.190 Sum_probs=243.9
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+.++ ++++.+++.|+++|++.+...+...++
T Consensus 40 ~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 117 (385)
T TIGR00710 40 SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--NNIETLLVLRFVQAFGASAGSVISQAL 117 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+++|++++++.+....+|..+++.+++.+.++.+||+.|++.++..++..+...+..||+++++++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 190 (385)
T TIGR00710 118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI------- 190 (385)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC-------
Confidence 9999999999999999999999999999999999999899999999988887777666666555544322110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+.++..+++++.+|+|+++...+...+..........+.|.++++++|.++.+.+.+.....++.
T Consensus 191 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 255 (385)
T TIGR00710 191 ---------------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAM 255 (385)
T ss_pred ---------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 01112235667889999988877777777777788888999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-hcc-chh-hHHHHHHHHHhhhhccccccchhhhcc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-AAK-SPV-MASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
++++++.+++.||+++|+ ...........+....... ... ... .......+.....+...+.......|.
T Consensus 256 ~~~~~~~g~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 328 (385)
T TIGR00710 256 IFGGFLNGRFIKKWGAKS-------LLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALED 328 (385)
T ss_pred HHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999882 2222221212222121111 111 122 222222222222233334445555666
Q ss_pred cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhh
Q 016442 319 APQYSGVLHGISNTAGTFAAILGTVGAGFFVEL 351 (389)
Q Consensus 319 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 351 (389)
.|++++++.++.+...+.++.+.+.+.+.+.+.
T Consensus 329 ~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 329 FPHVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 778899999999999887777777777755444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=251.42 Aligned_cols=340 Identities=13% Similarity=0.127 Sum_probs=253.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc---ccchHHHHHHHHHhhhhhccchhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
+|.+++.+++.+++.++.++.|++.||+|+|+++..+..+.++.++..+++. .+|++.+++.|++.|++ +..++..
T Consensus 70 ~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~ 148 (462)
T PRK15034 70 DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASS 148 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHH
Confidence 5788999999999999999999999999999999999999999999888742 26899999999999998 6688999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh-----c-------------ccCcchhHHHHhhHHHHHHHHH
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-----S-------------QAGIFGPFVIFGLSGFLWVLVW 140 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-----~-------------~~~w~~~f~~~~~~~~~~~~~~ 140 (389)
...+++|+|+++||+++|+.....++|..+++.+...+. + ..+||.+.++..++.++..+..
T Consensus 149 ~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~ 228 (462)
T PRK15034 149 MGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAA 228 (462)
T ss_pred HHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998777778776666654433 2 2347777778888777777666
Q ss_pred HHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 016442 141 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN 220 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (389)
++..++.++++ ...++.++.+|+|+.|...+.+++...++.++..++|.|.+
T Consensus 229 ~~~~~~~~~~~----------------------------~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~ 280 (462)
T PRK15034 229 WSGMNDIASSR----------------------------ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAK 280 (462)
T ss_pred HHhCCCccccc----------------------------cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66644433211 11235668999999999999999999999999999999998
Q ss_pred HHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH----HHHhhc--cchhhHH
Q 016442 221 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL----IGLTAA--KSPVMAS 294 (389)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~ 294 (389)
+.+ +............+...+.++++|+++||+|+++ +...+++...+.. ...+.. .+.+...
T Consensus 281 ~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~---------vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~ 349 (462)
T PRK15034 281 TQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR---------VTLINFIFMAIFSALLFLTLPGTGSGNFIAFY 349 (462)
T ss_pred HHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH---------HHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 854 3333333334456778888999999999999882 2222222222211 112111 1223333
Q ss_pred HHHHHHHhhhhccccccchhhhccccc----------------------chhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 295 AWLTLAIGMKSFSHSGFLVNLQEIAPQ----------------------YSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
..++..+...+..+......+.+.+|+ +.|.+.|+....+.+|+++-|.++|...+..
T Consensus 350 ~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~ 429 (462)
T PRK15034 350 AVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT 429 (462)
T ss_pred HHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc
Confidence 333333344455555555555554442 6789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 016442 353 GSFQGFLLLTSLLYFLSALFYIIFSTGER 381 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (389)
|++...|+...+..+++..+.+....+++
T Consensus 430 g~~~~~~~~~~~~~~~~~~~~w~~y~r~~ 458 (462)
T PRK15034 430 GSPVGAMKVFLIFYIVCVLLTWLVYGRRK 458 (462)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999998888887766654443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=255.71 Aligned_cols=333 Identities=14% Similarity=0.065 Sum_probs=238.1
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
+.++..+++.+++.++++++|+++||+|||+++..+..+.+++.+++.++ +|++.++++|+++|++.+...+....++
T Consensus 52 ~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 52 LAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--TSMTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 9999999999999999887777788899
Q ss_pred hcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHH
Q 016442 83 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYI 162 (389)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (389)
.|++|+++|++++++......+|..+||.+++.+.++.|||+.|++.++..++..+..++..||+++++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-------- 201 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP-------- 201 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC--------
Confidence 999999999999999999999999999999999998889999999999888777665555555543221100
Q ss_pred HHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHH
Q 016442 163 LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMA 242 (389)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 242 (389)
.+.++..+++++++|||+++...+..++.......+..+.|.++++.+|+++.+.++.......+..
T Consensus 202 -------------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~ 268 (413)
T PRK15403 202 -------------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVI 268 (413)
T ss_pred -------------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0011123467789999999998888888888888888899999999889999999998777777777
Q ss_pred HHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhh-HHHHHHHHHhhhhccccccchhhhccccc
Q 016442 243 FTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVM-ASAWLTLAIGMKSFSHSGFLVNLQEIAPQ 321 (389)
Q Consensus 243 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (389)
++..+.+++.++..+++... ....+...+......... ...+..+. .....+.+.+.+.. .+..........+.
T Consensus 269 i~~~l~~~~~~~~~~~~~~~--~~~~~~~ig~~l~~~~~~--~~~~~~~~~~~~~~l~~~G~~~~-~p~~~~~al~~~~~ 343 (413)
T PRK15403 269 VANAIVARFVKDPTEPRFIW--RAVPIQLVGLALLIVGNL--LWPHVWLWSVLGTSLYAFGIGLI-FPTLFRFTLFSNNL 343 (413)
T ss_pred HHHHHHHHHhccCCchhHHH--HHHHHHHHHHHHHHHHHH--HccccHHHHHHHHHHHHHHHHHH-hHHHHHHHhccCCC
Confidence 77776666554332221100 000111111111111111 11222221 22222233333322 22222222222223
Q ss_pred chhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 322 YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 322 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
.+|++.++.+.....+...++...+++.++.. ...+...+++
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~ 385 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVEIGRWLWFNGG--RLPFHLLAVV 385 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence 58999999999999999999999999988733 4444444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=252.08 Aligned_cols=345 Identities=17% Similarity=0.191 Sum_probs=248.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|.+++.+++.++..++++++|+++||+|||+++..+..+.+++...+.++ ++++.+++.|+++|++.+...+...++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 103 (377)
T PRK11102 26 GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLIYMRFLHGLAAAAASVVINAL 103 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..||+++++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 176 (377)
T PRK11102 104 MRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQ------- 176 (377)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccC-------
Confidence 9999999999999999999999999999999999999899999999988888776666655555543221110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+.+.++..+++++.+++|+.+...+..++...+......+.|.++.+.+|+++.+.+.+.....+..
T Consensus 177 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 243 (377)
T PRK11102 177 -------------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFL 243 (377)
T ss_pred -------------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 0011112345667888998887777777777777777788888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh-hHHHHHHHHHhh-ccchhhHHHHHHHHHhhhhccccccchhhhccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTA-AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
+++.++.+++.||+++|+ ........ ...+........ ....+..........+..............+..
T Consensus 244 ~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (377)
T PRK11102 244 FVMTIINSRFVRRVGALN-------MLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEF 316 (377)
T ss_pred HHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 999999999999999882 12211111 112222222221 122222222222222222233333344566777
Q ss_pred ccchhHHHHHHHHHhh-hhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 320 PQYSGVLHGISNTAGT-FAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 320 ~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
|++++++.++.+.... ++..+++.+.+. .+. ++...+...+++.+.+.+..+...+
T Consensus 317 ~~~~g~~~~~~~~~~~~~g~~~g~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (377)
T PRK11102 317 PHMAGTASSLAGTLRFGIGAIVGALLSLA-PFT--SAWPMVWSMAFCSILSILFYLYASR 373 (377)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhc-cCC--ChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8999999999877654 555566655432 222 2333344444444554444444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=259.08 Aligned_cols=339 Identities=12% Similarity=0.059 Sum_probs=249.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.+.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++.+++.++ ++++.+++.|+++|++.+...+...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~ 122 (471)
T PRK10504 45 LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNELLLARVLQGVGGAMMVPVGRLT 122 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999998888 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+++|++++++.+...++|..+||.+++.+.++.+||+.|++......+..+......|+.+.+.++.+......
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~ 202 (471)
T PRK10504 123 VMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLL 202 (471)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999887777766666665555443333222211000
Q ss_pred ----------HHHhcCCc-cc------------------cCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 016442 162 ----------ILREKQKP-LL------------------MGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL 212 (389)
Q Consensus 162 ----------~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (389)
..+..+.. .. ..++.+.+++..+. +++|||+++......++...+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~ 281 (471)
T PRK10504 203 LAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLP 281 (471)
T ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHH
Confidence 00000000 00 00011111222333 57899999888888888888877778
Q ss_pred HhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh--ccc-
Q 016442 213 SWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA--AKS- 289 (389)
Q Consensus 213 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 289 (389)
.+.|.|+++..|.++.+.++......++..++.++.+++.||+++| .+...+.....+....+.. ...
T Consensus 282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (471)
T PRK10504 282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR---------RVLVATTLGLALVSLLFMLVALLGW 352 (471)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHHHHHHHHHHHHhcccccc
Confidence 8899999987899999999998888888888889999999999988 2223333322222222211 122
Q ss_pred hhhHH-HHHHHHHhhhhccccccchhhhcc-cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 290 PVMAS-AWLTLAIGMKSFSHSGFLVNLQEI-APQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 290 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
.+... ...+.+.+.. ...+.......+. +++.++.++|+.++..++|..+|+.+.|.+.+..|
T Consensus 353 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 353 YYLLPFVLFLQGMVNS-TRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111 1222223222 2333344444444 44899999999999999999999999999998876
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=255.94 Aligned_cols=341 Identities=14% Similarity=0.096 Sum_probs=242.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.+.+++.+.+.+++.++.+++|+++||+|||++++.+..+.+++++.+.+. ++. ++.|+++|++.+...|+..++
T Consensus 38 ~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--~~~---~~~r~l~G~~~a~~~pa~~a~ 112 (393)
T PRK11195 38 WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--IHP---LLAYGLVGIGAAAYSPAKYGI 112 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999998888777 554 788999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+....+|..+||.+++.+.++ .|+..+.+.+...++..+. .+..||+++++++.+.++.+.
T Consensus 113 i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 190 (393)
T PRK11195 113 LTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALF-NLFIPRLGARRPGQSWNPIAL 190 (393)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhcCCCCcccccccCCCHHHH
Confidence 99999999999999999999999999999999999885 4777777666554443333 344455433221111100000
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
. ++.++.+++++++|.+........+............|.|+++.+|.++.+.|.......++.
T Consensus 191 -~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~ 254 (393)
T PRK11195 191 -L---------------RDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGI 254 (393)
T ss_pred -H---------------HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 0 001123457788887776655555555556666777888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHH-HHHHhhhhccccccchhhhcccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWL-TLAIGMKSFSHSGFLVNLQEIAP 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 320 (389)
+++++..+++.||.++++ ....+. ..+.........++.+...... +.+.+.. ...+...+..++..|
T Consensus 255 i~g~~~~~~l~~~~~~~~---------~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g-~~~~~~~~~~q~~~~ 323 (393)
T PRK11195 255 AVGAGAAARLVTLETVLR---------VLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG-FFVVPMNALLQHRGH 323 (393)
T ss_pred HHHHHHHHHHhcCCcccc---------hHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh-hhhhhHHHHHHhhCc
Confidence 999999999988766652 112222 2222222223333333333333 3333333 333445555666776
Q ss_pred c-c-hhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 321 Q-Y-SGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 321 ~-~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
+ . +|++.++.+...+++..++..+.+.+ +..| ....+.+.++..+++.......+.
T Consensus 324 ~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK11195 324 VLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVALAMALLWRW 381 (393)
T ss_pred ccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3 69999999999999999999999965 5666 666666666666565555444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=250.81 Aligned_cols=328 Identities=14% Similarity=0.098 Sum_probs=236.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+|+|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.++++ +|++.+++.|+++|++.+...+...+.
T Consensus 41 ~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~ 118 (381)
T PRK03633 41 WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--VGFWSWLAWRFVAGIGCAMIWVVVESA 118 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998 999999999999999999988988888
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|..++++|+++++..+...++|..+||.+++.+.+...|+..+. .+...... +...+. +.++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~~--------- 186 (381)
T PRK03633 119 LMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV-TGLVLAAI-LPLLFT-RILNQQAE--------- 186 (381)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH-HHHHHHHH-HHHHHh-cccCCCCC---------
Confidence 8899999999999999999999999999999999877544433333 22222211 112221 11111100
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+ + +..+.++.+|+|.++......+.....+....+++|.|+++ .|.++.+.+...+...++.
T Consensus 187 -------------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~ 248 (381)
T PRK03633 187 -------------N-H---DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAG 248 (381)
T ss_pred -------------C-C---CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 0 0 11234567888887765544455555566677889999987 6999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP- 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (389)
+++++..+++.||+++| .....+............ ..........+.+.+.. ...+.......|..|
T Consensus 249 ~~~~~~~g~l~dr~~~~---------~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~ 316 (381)
T PRK03633 249 ILGQWPIGRLADRFGRL---------LVLRVQVFVVILGSIAML--SQAAMAPALFILGAAGF-TLYPVAMAWACEKVEH 316 (381)
T ss_pred HHHHhhhHHHHHHcCcH---------HHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH-hHHHHHHHHHHccCCH
Confidence 99999999999999988 222222222222222221 11111222222332222 233445555555555
Q ss_pred cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016442 321 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI 374 (389)
Q Consensus 321 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (389)
++++...+..+...++|..++|.+.|++.|+.| +...|...+.+.++..+..+
T Consensus 317 ~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 317 HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHH
Confidence 677788888888899999999999999999987 77888877777665544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=251.07 Aligned_cols=335 Identities=13% Similarity=0.082 Sum_probs=242.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.++|++.+.+.+...+.+++.|+++||+|||+++..+..+.+++.+.+.+. ++++.+++.|+++|++.+...+...++
T Consensus 46 ~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~ 123 (400)
T PRK11646 46 VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWLSCILSGLGGTLFDPPRTAL 123 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888889999999999999999999999999999999999999998 999999999999999999888999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+...++|..+||.+++.+. ..+||+.|++.+...++..+......||++++++
T Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~--------- 193 (400)
T PRK11646 124 VIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTV--------- 193 (400)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccccc---------
Confidence 999999999999999999999999999999999998 6799999999888777665554444443211100
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+++..+++++.+++|+++...+..+...........+.|.|+++..+ ++.+.+.+.+...+..
T Consensus 194 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~ 256 (400)
T PRK11646 194 ----------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLS 256 (400)
T ss_pred ----------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHH
Confidence 01122356788889988766555555444444556788999988544 7788888877777766
Q ss_pred HHHHHHHHHHHHH-HHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHH-HHHHHhhhhccccccchhhhccc
Q 016442 242 AFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 242 ~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
.......+++.|| ++.+ .....+....+.....+...++.+..... .+.+.+. ....+.......+..
T Consensus 257 ~~~~~~~~~~~~~r~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~-~~~~p~~~~~~~~~~ 326 (400)
T PRK11646 257 LTLLYPIARWSEKRFRLE---------HRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGS-IIAEPARETLSASLA 326 (400)
T ss_pred HHHHHHHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHccHHHHHHhcC
Confidence 6555555555554 4333 11223333333333333333333333222 2223322 334455556666666
Q ss_pred c-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHH
Q 016442 320 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS---FQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 320 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~ 375 (389)
| ++||++.|+.+...++|..+||.+.|.+.|+.++ ....+...+.+.+++.+....
T Consensus 327 p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (400)
T PRK11646 327 DARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYW 386 (400)
T ss_pred CcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHH
Confidence 5 8999999999999999999999999999998642 345555555555555554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=251.48 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=209.2
Q ss_pred HHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchH--------HHHHHHHHhhhhhccchhhhHHHHhcccC
Q 016442 16 LVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVARWFP 87 (389)
Q Consensus 16 ~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 87 (389)
.+++++.|+++||+|||+.++.+..++.++.++++++ +|++ .+++.|+++|++.+...+....+++|++|
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 147 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT 147 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence 4678999999999999999999999999999999999 8877 46899999999999999999999999999
Q ss_pred cCchhhHHHHHHhhhhhhhhhhhhhhhHhh--------cccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHH
Q 016442 88 QTERARAVAIAMGGFTSGNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 159 (389)
Q Consensus 88 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
+++|++++++.+...++|..+++.+++.+. +..|||+.|++..+...+ .+...++.|++++ .+.
T Consensus 148 ~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~----~~~~~~~~~e~~~----~~~ 219 (434)
T PRK15075 148 PGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF----IFLIRRSLEETEE----FLA 219 (434)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH----HHHHHHhcCCCHH----HHH
Confidence 999999999999998888888888877652 467999999875443211 1112111111100 000
Q ss_pred HHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHH
Q 016442 160 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI-IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 238 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (389)
+ + ++++.++.+++..++++.+.. ....++....++....|.|.|+++..|+++.+.++......
T Consensus 220 ~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~ 284 (434)
T PRK15075 220 R---K------------HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVG 284 (434)
T ss_pred h---h------------hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 0 000112234445556555543 33334455667778899999999888999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH--H-HHhhccchhhHHH-HHHHHHhhhhccccccchh
Q 016442 239 SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL--I-GLTAAKSPVMASA-WLTLAIGMKSFSHSGFLVN 314 (389)
Q Consensus 239 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 314 (389)
++..++.++.|+++||++||+ .... .......... . .....++...... ..+.+.+ .+...+....+
T Consensus 285 ~~~~~~~~~~g~l~Dr~g~r~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 355 (434)
T PRK15075 285 VSNFIWLPIGGALSDRIGRRP-------VLIA-FTVLAILTAYPALSWLVAAPSFARMLAVELWLSFL-YGSYNGAMVVA 355 (434)
T ss_pred HHHHHHHHHHHHHHHHhcchH-------HHHH-HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH-HHHHHhhHHHH
Confidence 999999999999999999882 1111 1111111111 1 1112222211212 1222222 22333444456
Q ss_pred hhcccc-cchhHHHHHHHHHhh-hhhhHHhHHHHHHHhhhhh
Q 016442 315 LQEIAP-QYSGVLHGISNTAGT-FAAILGTVGAGFFVELVGS 354 (389)
Q Consensus 315 ~~~~~~-~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g~ 354 (389)
..|..| +.|+++.|+.+.... +++.++|.+.|++.|+.|.
T Consensus 356 ~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 356 LTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 667776 799999999766555 4588899999999998873
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=251.82 Aligned_cols=339 Identities=17% Similarity=0.138 Sum_probs=243.8
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
.|++.+++.++..++++++|+++||+|||+++..+....+++.+++.+. +|++.+++.|++.|++.+ ..+....++.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 132 (408)
T PRK09874 56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA--QNIWQFLILRALLGLLGG-FVPNANALIA 132 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhh-hHHhHHHHHH
Confidence 3778889999999999999999999999999999999999999988888 999999999999999865 5678888999
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHH
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL 163 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (389)
|+.|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++..++..+...+..+|++++.++.++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 206 (408)
T PRK09874 133 TQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEML------ 206 (408)
T ss_pred HhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh------
Confidence 99999999999999999999999999999999999899999999998887777666666555543221110000
Q ss_pred HhcCCccccCCCCCCCCCchhHHHhhcchhHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHhccccc---hhhhhhhHHHH
Q 016442 164 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSI-IVANAMHSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWS 239 (389)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~ 239 (389)
..++..+.+++|+++.. ................++|.|.++..+.... ..+.+.....+
T Consensus 207 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 269 (408)
T PRK09874 207 -----------------HMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGV 269 (408)
T ss_pred -----------------HHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 01122345566666543 3333344445555667788888875332221 23455566677
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhccc
Q 016442 240 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 240 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
+..++.+..+++.||+++|+ ....+..............++.+......++.....+...+.......+..
T Consensus 270 ~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 340 (408)
T PRK09874 270 AALLSAPRLGKLGDRIGPEK---------ILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS 340 (408)
T ss_pred HHHHHHHHHHHHHhccccch---------hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence 88888899999999999882 222233333333333333333333333322222222333344444444444
Q ss_pred c-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 320 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 320 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
| +++|+.+++.+...++|..++|.+.|.+.|..| +...|...+++.+++.+......+
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 789999999999999999999999999999987 889999888888777766554433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=248.00 Aligned_cols=322 Identities=16% Similarity=0.130 Sum_probs=231.8
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.++..+.+.++..+++++.|+++||+|||+.+..+..+..++..++..+ +|++.+++.|+++|++.+...+...++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 115 (392)
T PRK10473 38 AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--ETSSLFLAGRFLQGIGAGCCYVVAFAI 115 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999988 999999999999999999989999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++..++..+......+|+++++++
T Consensus 116 i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------- 187 (392)
T PRK10473 116 LRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAP-------- 187 (392)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccC--------
Confidence 999999999999999999999999999999999988888999999999888877766665555554322110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
++++..+..++.+++|+++...+...+.......+..+.|.++++++|+++.+.+.......++.
T Consensus 188 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 252 (392)
T PRK10473 188 ---------------AASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVS 252 (392)
T ss_pred ---------------CccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00111224456788888776666555555555566677888888888999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchh-hHHHHHHHHHhhhhccccccchhhhcccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV-MASAWLTLAIGMKSFSHSGFLVNLQEIAP 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (389)
+++.++.+++.||+++| .....+..............+... ......+...+...... .....+..|
T Consensus 253 i~~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~~~~~~~~ 320 (392)
T PRK10473 253 MTVSFSTPFALGIFKPR---------TLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFG---VAMSQALGP 320 (392)
T ss_pred HHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHhcc
Confidence 99999999999999988 222233222222222222222222 22222222222222111 122334444
Q ss_pred -cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHH
Q 016442 321 -QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL 364 (389)
Q Consensus 321 -~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 364 (389)
++|+ |.......++..+++.+.+++.++.| +.......+.
T Consensus 321 ~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~~ 361 (392)
T PRK10473 321 FSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIGI 361 (392)
T ss_pred Ccccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Confidence 3332 33344456777788888888888877 4443333333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=248.67 Aligned_cols=317 Identities=18% Similarity=0.141 Sum_probs=239.1
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+++.++..++++++|+++||+|||+++..+..+..++.+++.++ ++++.+++.|+++|++.+...+...++
T Consensus 41 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~ 118 (401)
T PRK11043 41 SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLLVLRFVQAVGVCSAAVIWQAL 118 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999998 999999999999999988888888899
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|++++++..+.......+|..++|.+++.+.++.+||+.|++.++..++..+..++.+|+++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 189 (401)
T PRK11043 119 VIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKARKQ--------- 189 (401)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCcccc---------
Confidence 99999999999999999999999999999999999999999999999888887766655554433221110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
++.+.++++++|+|+++...+...+....+.....+.|.++++ .|+++.+.+.......++.
T Consensus 190 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~ 251 (401)
T PRK11043 190 -----------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAF 251 (401)
T ss_pred -----------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 0112356788889988776666666666667778889998877 7999999998877778888
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHH--HhhccchhhHHHHHHHHHhhhhccccccchhhhccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG--LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
.++++..+++.||+++|+.. ................ ....+..+.......+.....+...+.......+..
T Consensus 252 ~~g~~~~~~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (401)
T PRK11043 252 LVGGYGCRAALQKWGGEQLL------PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPF 325 (401)
T ss_pred HHHHHHHHHHHHHcCHHHHH------HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 89999999999999877211 1111111111111111 111222222222222222223333444444445556
Q ss_pred ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 320 PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 320 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
|+++|++.|+.+.....+...++.+.|.+.|...
T Consensus 326 ~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 326 PQATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 7889999999999999999999999999988643
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=254.22 Aligned_cols=316 Identities=25% Similarity=0.415 Sum_probs=237.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+++|++.+++.++..+++++.|+++||+|||+++..+..+.+++.++..++ +|++.+++.|+++|++.+...+...++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 109 (352)
T PF07690_consen 32 SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SNFWLLLIARFLLGIGSGFFSPASNAL 109 (352)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hhHHHHhhhcccccccccccccccccc
Confidence 578899999999999999999999999999999999999999997777777 788899999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+...++|..++|.+++.+.++.+||+.|++.+++.++..++.....+++++++++.++++.+
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~- 188 (352)
T PF07690_consen 110 IADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE- 188 (352)
T ss_dssp HHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT-
T ss_pred ccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc-
Confidence 9999999999999999999999999999999999998899999999999998887765444444443333221111100
Q ss_pred HHHhcCCccccCCCCCCCCCch-hHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccc-cchhhhhhhHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIP-PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID-LRQASWFSAVPWS 239 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~ 239 (389)
++++++.. .++.++++|.+|......++..........+.|.|+++.+|.+ ..+.+.......+
T Consensus 189 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 254 (352)
T PF07690_consen 189 --------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGI 254 (352)
T ss_dssp ----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHH
T ss_pred --------------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHH
Confidence 00111122 3667777887775566666666678889999999988889999 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhh-HHHHHHHHHhhccchhhHH-HHHHHHHhhhhccccccchhhhc
Q 016442 240 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI-APGIALIGLTAAKSPVMAS-AWLTLAIGMKSFSHSGFLVNLQE 317 (389)
Q Consensus 240 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 317 (389)
...++.++.+++.||++++ +......... .....+......++..... ...+.+. ..+...+....+..+
T Consensus 255 ~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ 326 (352)
T PF07690_consen 255 VGIIGSLLAGRLSDRFGRR-------RRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGF-GFGIVFPILFSLIQE 326 (352)
T ss_dssp HHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999998875 2222222222 2222222122222223333 3333344 444556666677777
Q ss_pred ccc-cchhHHHHHHHHHhhhhhhHHh
Q 016442 318 IAP-QYSGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 318 ~~~-~~~g~~~g~~~~~~~~g~~~~~ 342 (389)
..| |++|++.|+.+...+++..++|
T Consensus 327 ~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 327 LVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 766 8999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=249.89 Aligned_cols=333 Identities=15% Similarity=0.084 Sum_probs=238.1
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHh---hhhcccchHHHHHHHHHhhhhhccchhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
++.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++ ..+ +|++.+++.|+++|+|.+...+..
T Consensus 61 ~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a--~~~~~ll~~r~l~G~g~g~~~~~~ 138 (438)
T PRK10133 61 FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhhH
Confidence 567899999999999999999999999999999999999999999875 356 899999999999999999999999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-c-------------------------cCcchhHHHHhhH
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-Q-------------------------AGIFGPFVIFGLS 132 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~-------------------------~~w~~~f~~~~~~ 132 (389)
++++.|+.|+++|.+.+++.+..+.+|..+++.+++.+.. . .+||++|+....+
T Consensus 139 ~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v 218 (438)
T PRK10133 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877777778999999999999999999875430 0 2466666543433
Q ss_pred HH-HHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 016442 133 GF-LWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI 211 (389)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (389)
.. +..+......||.+++++ +++++.+..+++++++|+|+++...+..++........
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~~---------------------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~ 277 (438)
T PRK10133 219 VLLVALLIMLTKFPALQSDNH---------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTAC 277 (438)
T ss_pred HHHHHHHHHHhcCCCCCcccc---------------------ccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 33 322222222222111100 00011122345668899999888777777777888888
Q ss_pred HHhhhHHH-HHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccch
Q 016442 212 LSWMPIYF-NFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP 290 (389)
Q Consensus 212 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (389)
..|.+.|+ ++.+|+++.+++.......++..+++++++++.||+++|+ ....+.......+......+..
T Consensus 278 ~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~---------~l~~~~~~~~~~~~~~~~~~~~ 348 (438)
T PRK10133 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK---------VLAAYALIAMALCLISAFAGGH 348 (438)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---------HHHHHHHHHHHHHHHHHHcCCh
Confidence 88899885 5668999999999999999999999999999999999882 2222222222222222222222
Q ss_pred hhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 016442 291 VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 368 (389)
.......+.+.+ .+...|..+....+..|++.+++.++.. ....++.++|.+.|.+.|..|+....|++...+.+.
T Consensus 349 ~~~~~~~l~glg-~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 349 VGLIALTLCSAF-MSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 222233333333 3444556666666667777788888886 455789999999999999876456666655444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=247.33 Aligned_cols=330 Identities=15% Similarity=0.120 Sum_probs=227.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHh---hhh---cccchHHHHHHHHHhhhhhccch
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWA---ADTSLLALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~---~~~~~~~l~~~r~l~G~~~~~~~ 75 (389)
+++|++.+++.+++.++++++|+++||+||||++..+.....++.+.. ... ..+|++.+++.|+++|++.+...
T Consensus 51 ~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 130 (392)
T PRK12382 51 TMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLL 130 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999988877665432 111 01578899999999999999988
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+...+++.|++|+|+|++++++.+.+.+.|..++|.+++.+.++.|||+.+.+..+..++... .. ++.|+.+++
T Consensus 131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~-- 204 (392)
T PRK12382 131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FN-GTVRKVPAH-- 204 (392)
T ss_pred HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HH-HhccCCCCC--
Confidence 999999999999999999999999999999999999999999989999877665544333222 11 111111110
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
+++++ +.++..| .++...+..++..........+.|.|+++ .|++ +.+....
T Consensus 205 -------------------~~~~~----~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~ 256 (392)
T PRK12382 205 -------------------AGERP----SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLT 256 (392)
T ss_pred -------------------cccCc----hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHH
Confidence 00000 1112221 11221222233444555667788888877 4654 3455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHH-HHHHHhhhhccccccchh
Q 016442 236 VPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAW-LTLAIGMKSFSHSGFLVN 314 (389)
Q Consensus 236 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 314 (389)
...++.+++++..+++.||+++|+. . ..+..............++.+..... .+.+.+.. ...+.....
T Consensus 257 ~~~~~~~~~~~~~g~l~~r~g~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~ 326 (392)
T PRK12382 257 AFGGAFVLMRVLFGWMPDRFGGVKV-------A--IVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCS-LIFPALGVE 326 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCee-------h--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-hHHHHHHHH
Confidence 6777788899999999999998733 2 22222222222233333333333222 22333222 333334444
Q ss_pred hhc-ccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 315 LQE-IAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 315 ~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..+ .+|++||++.|+.+...+++..++|.+.|.+.|+.| +...|.+.+++.+++.+.....
T Consensus 327 ~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 327 VVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHhh
Confidence 444 445899999999999999999999999999999987 8999998888887777765544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=244.60 Aligned_cols=336 Identities=15% Similarity=0.109 Sum_probs=229.3
Q ss_pred CcCcchhHHHHH-HHHHhhhhhhhhhhhcCCeehh-HHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLW-GYLVSPIAGGTLVDYYGGKIIM-AWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
+++|++.+...+ +..++++++++ .||+||||.+ ..+.+..+++..+.+++ ++++.+++.+.+.|...+...|...
T Consensus 51 ~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~ 127 (393)
T PRK15011 51 AMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN--RNYFVLLFVGVFLSSFGSTANPQMF 127 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456777766545 55566665565 9999999875 45566666777778888 8999887666555544557788889
Q ss_pred HHHhcccCcCch--hhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHH
Q 016442 80 NMVARWFPQTER--ARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY 157 (389)
Q Consensus 80 ~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
++..|+.++++| +...++.+.+.++|.++||++++.+.+++|||..|+..++..++..+..+...||.++++++.+ +
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 206 (393)
T PRK15011 128 ALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-G 206 (393)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-c
Confidence 999998876655 3456888999999999999999999999999999999988887776666665666543322100 0
Q ss_pred HHHHHHHhcCCccccCCCCCCCCCchhHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhH
Q 016442 158 ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 236 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (389)
+ .+ .. .++ +..+...............+..+.|.|+++.+|+++.+.+.+.+.
T Consensus 207 -----------------~--~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~ 260 (393)
T PRK15011 207 -----------------T--LE----AP---RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGT 260 (393)
T ss_pred -----------------c--cc----cc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0 00 00 011 122233333344444555667789999988889999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhh
Q 016442 237 PWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQ 316 (389)
Q Consensus 237 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (389)
..+..+++.++.|+++||+++|+ .. ..+..............++.+.......+.....+...+....+.+
T Consensus 261 ~~~~~i~~~~~~G~l~dr~g~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~ 331 (393)
T PRK15011 261 AAGLEIPTMLIAGYFAKRLGKRF-------LM--RVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQ 331 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhChHH-------HH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999882 11 1222222222222222233333222222222222222233345667
Q ss_pred cccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 317 EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 317 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
|..|++++++.++++...++|..++|.+.|.+.|+.| ++..+...+++.+++.+..+..+
T Consensus 332 ~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 332 DLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred HhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888889999999999999999999999999999887 88888887777777776665553
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=249.27 Aligned_cols=322 Identities=18% Similarity=0.154 Sum_probs=231.0
Q ss_pred HHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchH--------HHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 13 WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLL--------ALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 13 ~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
++..+++++.|+++||+|||+++..+..+..++.++++++ ++++ .+++.|+++|++.+...+...+++.|
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 3445788999999999999999999999999999999998 7765 48899999999999999999999999
Q ss_pred ccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh--------cccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcH
Q 016442 85 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILM--------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK 156 (389)
Q Consensus 85 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
++|+|+|++..+..+.+..+|..+++.++..+. +..+||+.|++.++..++..... ...+|++++++
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---- 198 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR-RNLEETPVFEK---- 198 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHH----
Confidence 999999999999999999999999998876653 35689999988776655543332 22233321110
Q ss_pred HHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchh--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhh
Q 016442 157 YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP--TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFS 234 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (389)
+ ++++++...+.++.+++++ ++......++..........+.|.|+++++|.++.+.+...
T Consensus 199 -~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 261 (394)
T TIGR00883 199 -A----------------QEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVL 261 (394)
T ss_pred -H----------------HhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 0 0001112234556666665 66667777777777888889999999887899999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH--HH-HHhhccchhhHHHHHHHHHhhhhcccccc
Q 016442 235 AVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA--LI-GLTAAKSPVMASAWLTLAIGMKSFSHSGF 311 (389)
Q Consensus 235 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
....+...++.++.+++.||++||+ ............. .. .....++.+......+......+...+..
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (394)
T TIGR00883 262 MLSLILFFITIPLSGALSDRIGRRP--------VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPM 333 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHH--------HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhH
Confidence 8999999999999999999999882 1211111111111 11 12222333333333333333333445556
Q ss_pred chhhhcccc-cchhHHHHHH-HHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHH
Q 016442 312 LVNLQEIAP-QYSGVLHGIS-NTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLY 366 (389)
Q Consensus 312 ~~~~~~~~~-~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 366 (389)
.....|..| ++|+++.|+. +....+|..++|.+.|++.|+.|.+...++...++.
T Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 677777777 7899999985 455568888999999999999875555555544433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=242.16 Aligned_cols=315 Identities=29% Similarity=0.470 Sum_probs=267.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.+...+. ++++.+++.|++.|++.+...+...++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 111 (352)
T cd06174 34 SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAAL 111 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHcccccccHhHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++.+++.+...++|..++|.+++.+.+..+||+.+++.++..++..+...+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 174 (352)
T cd06174 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL----------------- 174 (352)
T ss_pred HHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999988999999998888777666655542
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
|+++...+..++..........+.|.+.++..|.++.+.+.......++.
T Consensus 175 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (352)
T cd06174 175 ------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGG 224 (352)
T ss_pred ------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45666777888888888999999999999977999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP- 320 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (389)
.++.++.+++.||+++|+. ....+..............++.+.......+.....+...+....+..|..|
T Consensus 225 ~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (352)
T cd06174 225 ILGALLGGLLSDRLGRRRL--------LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296 (352)
T ss_pred HHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH
Confidence 9999999999999999820 3344444444444444444444444444444444445556667777777777
Q ss_pred cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016442 321 QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYI 374 (389)
Q Consensus 321 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (389)
++|++..|+.+...+++..++|.+.|.+.|..+ +...+.+.+++.+++.+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHHhe
Confidence 899999999999999999999999999999876 88888888888777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=248.29 Aligned_cols=347 Identities=14% Similarity=0.112 Sum_probs=248.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+++|++.+.+.++..+++++.|+++||+|||+++.++..+..++.++..++ +|++.+++.|.+.|.+.+...+...++
T Consensus 43 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 120 (395)
T PRK10054 43 DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--NNVTLVVLFFALINCAYSVFSTVLKAW 120 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999998 999999999999998888888889999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
..|..|+++|++++++.+...++|..++|.+++.+.+ .+|+..|++.++..++..+...+..|++++++++.
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~------- 192 (395)
T PRK10054 121 FADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE------- 192 (395)
T ss_pred HHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------
Confidence 9999999999999999999999999999999999875 69999999988877776555544443332211100
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--hccccchhhhhhhHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWS 239 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~ 239 (389)
+ + ...+.++.+|||+++...+..++..........+.+.|..+. .+.++...+.+......
T Consensus 193 -------------~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 255 (395)
T PRK10054 193 -------------T-G---SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAA 255 (395)
T ss_pred -------------h-h---hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhh
Confidence 0 0 001225778899998887777777777666666777777543 34455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh-ccchhhH-HHHHHHHHhhhhccccccchhhhc
Q 016442 240 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA-AKSPVMA-SAWLTLAIGMKSFSHSGFLVNLQE 317 (389)
Q Consensus 240 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 317 (389)
.........+++.||.++| .....++............ .++.+.. +...+.+.+. ....+.......+
T Consensus 256 ~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~ 325 (395)
T PRK10054 256 MVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGE-IIYAPGEYMLIDH 325 (395)
T ss_pred heeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH-HHHHhhHHHHHHH
Confidence 6666677888889988777 2223333333333333322 2233322 2233333332 3334455566666
Q ss_pred ccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCccccccccC
Q 016442 318 IAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGERVNFDEAAL 389 (389)
Q Consensus 318 ~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 389 (389)
..| +.++++.+..+ ...+|..+||.+.|.+.|+.| +...|.+.+.+..+..+... ++.+.+++.++++
T Consensus 326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 394 (395)
T PRK10054 326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLML--KGMRARPWGQPAL 394 (395)
T ss_pred hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHHH--hccccCcccCCcC
Confidence 666 78899988765 667999999999999999997 77777766555544444333 4555566666653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=242.93 Aligned_cols=317 Identities=15% Similarity=0.127 Sum_probs=241.1
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.+++.+.+.+++.+++++.|+++||+|||+++..+..+..++.+.+.++ +|++.+++.|+++|++.+...+....+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~ 120 (394)
T PRK11652 43 GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--HSLTVLIAASAIQGLGTGVGGVMARTL 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999888 999999999999999998888888899
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
..|.+++++|+++++..+.+..+|..++|.+++.+.++.|||+.|++.++..++..+...+..||+++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 192 (394)
T PRK11652 121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR-------- 192 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc--------
Confidence 999999999999999999999999999999999999889999999998887776655555555554322110
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+++.++++++.+|+|+++...+..+........+..+.+.++++.+|+++.+.+.......++.
T Consensus 193 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 256 (394)
T PRK11652 193 ----------------RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAA 256 (394)
T ss_pred ----------------hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0112346678888998887666666666666666777888998888999999998888878888
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh--hccchhhHHHHHHHHHhhhhccccccchhhhccc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--AAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
.++..+.+++.||.+++ ................... ...+.+.......+.....+...+.......+..
T Consensus 257 ~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 328 (394)
T PRK11652 257 FFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF 328 (394)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888888888743 1111122222222211111 1122233333333333333344556666667777
Q ss_pred ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 320 PQYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 320 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
|+++|++.++.+....+|..+++.+.+.+.+..
T Consensus 329 ~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 329 PYLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 889999999999999999999999999887663
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=247.97 Aligned_cols=335 Identities=21% Similarity=0.257 Sum_probs=238.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.++..++.++.|+++||+|||+.+..+..+..++.++..+. ++++.+++.|++.|++.+...+...++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (398)
T TIGR00895 52 VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--TNVTQLLILRFLAGLGLGGLMPNLNAL 129 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHhcccccchhhHHHH
Confidence 457888999999999999999999999999999999999999999999988 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+++|++++++.+....+|..+++.+++.+.+..+||+.|++.++...+..+......||+++...+.++++.++
T Consensus 130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (398)
T TIGR00895 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRR 209 (398)
T ss_pred HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999877666666666666666554221111111111
Q ss_pred HH----HhcCCccc--cCCCCCC-CCCchhHHHhhcc---hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhh
Q 016442 162 IL----REKQKPLL--MGNKHKP-ATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS 231 (389)
Q Consensus 162 ~~----~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (389)
.. ++...+.+ .++++++ +..++..+.++++ ++.+...+..++..........+.|.+.+ ..|.++.+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 288 (398)
T TIGR00895 210 IVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGFSLSLAA 288 (398)
T ss_pred HHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 11 11110000 0000011 1111222223333 33444455555666677777888885554 4799999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhcccccc
Q 016442 232 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 311 (389)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
.......++.+++.++.+++.||+++| ....................++........++.....+...+..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 359 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLGPR---------VTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGL 359 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877 11111111111122222212233333333333333333444556
Q ss_pred chhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 312 LVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 312 ~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
..+..+..| ++|+++.|+.+...++|..++|.+.|++
T Consensus 360 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 360 YALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 677777776 7999999999999999999999999875
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=244.82 Aligned_cols=316 Identities=17% Similarity=0.217 Sum_probs=231.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT-SLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
++.+++.+.+.+++.+++++.|+++||+|||+.+..+..+..++.+++.++ + +++.+++.|+++|++.+. .+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~ 113 (366)
T TIGR00886 37 AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQSYSVLLLLRLFIGIAGGS-FASCMP 113 (366)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhchh-hHhHHH
Confidence 467899999999999999999999999999999999999999999999998 8 999999999999999654 566789
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc----------ccCcchhH-HHHhhHHHHHHHHHHHhccCCCC
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS----------QAGIFGPF-VIFGLSGFLWVLVWLSATSSTPD 149 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~----------~~~w~~~f-~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
+++|++|+++|++++++.....++|..+++.+++.+.+ +.+||+.| ...++...+..++.....+|.|+
T Consensus 114 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (366)
T TIGR00886 114 WISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP 193 (366)
T ss_pred HHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence 99999999999999999998888888888888776654 34899999 44455555544454444455443
Q ss_pred CCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccch
Q 016442 150 RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ 229 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (389)
++++.++.+. +. +....+++..++.++.+++|+++...+..++..........+.|.|+++.+|+++.+
T Consensus 194 ~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 262 (366)
T TIGR00886 194 GKPATGKLSF-------KG----ARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVT 262 (366)
T ss_pred ccccchhccc-------cc----ccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 2211110000 00 000011111225567888999988888777777777888899999999989999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhcc--chhhHHHHHHHHHhhhhcc
Q 016442 230 ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFS 307 (389)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 307 (389)
++.+.....+..++++++.+++.||+++|+ ...........+...+.....+ +...............+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (366)
T TIGR00886 263 AGAYASLGGLLGSLARPLGGAISDRLGGAR-------KLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAG 335 (366)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHhhccch-------hHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccc
Confidence 999888889999999999999999999872 2333333333333333333222 3333333333333444445
Q ss_pred ccccchhhhcccccchhHHHHHHHHHhhhhh
Q 016442 308 HSGFLVNLQEIAPQYSGVLHGISNTAGTFAA 338 (389)
Q Consensus 308 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 338 (389)
.+.......+..|+++|+++|+.+..+++|+
T Consensus 336 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 336 NGSTFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred cchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence 5566677788888999999999999988763
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=240.95 Aligned_cols=331 Identities=14% Similarity=0.050 Sum_probs=246.7
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehh----HHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIM----AWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA 77 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 77 (389)
+|+|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..+ ++++.+++.|.++|.+.+...|.
T Consensus 39 ~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~l~~~~~l~~~~~~~~~p~ 114 (382)
T TIGR00902 39 EMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGA--HNAWLLFIAIGLFALFFSAGMPI 114 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh--hhHHHHHHHHHHHHHHHccchhH
Confidence 5789999999999999999999999999985432 222222222 233456 89999999999999999888999
Q ss_pred hHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHH
Q 016442 78 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY 157 (389)
Q Consensus 78 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
..++..|+ +++|++++|......++|.+++|.+++.+.+++|||..|++......+ .+.....+|+.++++++ +
T Consensus 115 ~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-- 188 (382)
T TIGR00902 115 GDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAF-MLIGFLIKPTIPPKDAI-P-- 188 (382)
T ss_pred HHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHHHHHcCCCCCCCccc-c--
Confidence 98988765 478899999999999999999999999999999999999887655332 23333333332221110 0
Q ss_pred HHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHH
Q 016442 158 ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVP 237 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (389)
+++++..+++++++|+|+++...+..++...+......+.|.|+++ .|.++.+.|......
T Consensus 189 ------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~ 249 (382)
T TIGR00902 189 ------------------EDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIG 249 (382)
T ss_pred ------------------ccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHH
Confidence 0011123356789999999999998888888898999999999987 799999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhc
Q 016442 238 WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQE 317 (389)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (389)
.+..++.....+++.||+++| .++..+.+...+........++.+..+...++-....+...+....+.++
T Consensus 250 ~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~ 320 (382)
T TIGR00902 250 VLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAA 320 (382)
T ss_pred HHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999888 44456666666555555555665555544444444444444555666667
Q ss_pred ccccchhHHHHHHHH-HhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 016442 318 IAPQYSGVLHGISNT-AGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALF 372 (389)
Q Consensus 318 ~~~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 372 (389)
.+++++++++++++. ...+|..++|.+.|++.|+.| . ..|...+.+.+++.+.
T Consensus 321 ~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 321 QPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence 755789999999874 567999999999999999987 5 5566666666655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=240.50 Aligned_cols=315 Identities=16% Similarity=0.156 Sum_probs=231.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.+++.+++++.|+++||+|||+++..+..+..++.+.+ .. ++++.+++.|++.|++.+...+..+.+
T Consensus 35 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~g~g~~~~~~~~~~~ 111 (355)
T TIGR00896 35 SVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAGTALIGVGIAIINVLLPSL 111 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHHHHHHHHHHHHHhccchHH
Confidence 467899999999999999999999999999999999999988888777 66 899999999999999999888888899
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc--CcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 159 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
+.|++| ++|++++++.+...++|..+++.+++.+.++. +||+.|...++..++.... + .++.++++++
T Consensus 112 ~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~--~-~~~~~~~~~~------ 181 (355)
T TIGR00896 112 IKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA--W-IPQVRRRVAA------ 181 (355)
T ss_pred HHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--H-hhhhccccCC------
Confidence 999986 68999999999999999999999998887765 3999988776654443222 2 2222111110
Q ss_pred HHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHH
Q 016442 160 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS 239 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (389)
++ +....+.++.+|+|.++...+..++....+.....++|.|+++ .|.++.+.+...+...+
T Consensus 182 --------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~ 243 (355)
T TIGR00896 182 --------------NQ---TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQL 243 (355)
T ss_pred --------------CC---CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 00 0011233467888988887777777777888888999999987 69999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchh-hhcc
Q 016442 240 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVN-LQEI 318 (389)
Q Consensus 240 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 318 (389)
+.+++++..+++.||+++|+ .....+......+.................+.+.+.+.. .+..... ..+.
T Consensus 244 ~~i~~~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~-~~~~~~~~~~~~ 314 (355)
T TIGR00896 244 AQAASALLIPALARRVKDQR--------GIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGA-FPLALTLIGLRS 314 (355)
T ss_pred HHHHHHHhHHHHHhhhccch--------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhH-hHHHHHHHHHhc
Confidence 99999999999999996541 222222222222222222222212222233334333322 2333333 3344
Q ss_pred cc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHH
Q 016442 319 AP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ 356 (389)
Q Consensus 319 ~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 356 (389)
.+ ++++...++.+...+++..++|.+.|++.|+.|+|.
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 315 RQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 44 678999999999999999999999999999988654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=251.31 Aligned_cols=344 Identities=14% Similarity=0.132 Sum_probs=229.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.+++.+.+.+++.++.++.|+++||+|||+++..+..+.+++.+++.++ +|++.+++.|+++|++.+...+...++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~ 132 (496)
T PRK03893 55 VQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--PGYWTLFIARLVIGMGMAGEYGSSATY 132 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcC-cHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI-SKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 160 (389)
+.|++|+|+|++++++...+.++|..+++.+.+.+.++.+||+.|++..+..++ .+......|++++..++. ++++.+
T Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~ 211 (496)
T PRK03893 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVR 211 (496)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccch
Confidence 999999999999999999999999999999999999999999999875443333 222222233332211100 000000
Q ss_pred HHHHhcCCccccCCCCCCCCCchhH---------HHhh-------------------------------cchhHHHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPF---------RRLL-------------------------------SKMPTWSIIVA 200 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------------------------------~~~~~~~~~~~ 200 (389)
...+... . .++...... ...+ +.+........
T Consensus 212 ~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (496)
T PRK03893 212 TMVDILY-------R-GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVV 283 (496)
T ss_pred hHHHHHh-------c-chhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 0000000 0 000000000 0000 00000001111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH
Q 016442 201 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA 280 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
.+...........++|.|+++.+|+++.+.+.+.+...++.++++++.|++.||+++|+ ....+.......
T Consensus 284 ~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~---------~~~~~~~~~~~~ 354 (496)
T PRK03893 284 VLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRK---------AYVCSLLISQLL 354 (496)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---------HHHHHHHHHHHH
Confidence 11111111235678999998778999999999999999999999999999999999882 222222222222
Q ss_pred HHHH-hhccch-hhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHH
Q 016442 281 LIGL-TAAKSP-VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQG 357 (389)
Q Consensus 281 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 357 (389)
.+.. ...+.. +..........+......+....+..+..| ++|++++|+.+...++|..++|.+.|.+.|+.| +..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~ 433 (496)
T PRK03893 355 IIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGT 433 (496)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHH
Confidence 2211 111222 222122222122222223344556667666 799999999999999999999999999999987 766
Q ss_pred HHHHHHHHH
Q 016442 358 FLLLTSLLY 366 (389)
Q Consensus 358 ~~~~~~~~~ 366 (389)
.+...+...
T Consensus 434 ~~~~~~~~~ 442 (496)
T PRK03893 434 ALASLSFSL 442 (496)
T ss_pred HHHHHHHHH
Confidence 665444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=242.01 Aligned_cols=333 Identities=16% Similarity=0.165 Sum_probs=241.6
Q ss_pred Hhhhhhhhhhhhc-----CCeeh-hHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccchhhhHHHHhcccCcC
Q 016442 17 VSPIAGGTLVDYY-----GGKII-MAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT 89 (389)
Q Consensus 17 ~~~~~~G~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 89 (389)
++.+++|+++||+ ||||. +..+.+..+++...+++.. .++++.+.+.+++.|++.+...+...+++.|++|+|
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 6889999999999 99985 6677777777777766642 257888999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhHhhc-ccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCC
Q 016442 90 ERARAVAIAMGGFTSGNAIGLVLSPILMS-QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQK 168 (389)
Q Consensus 90 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (389)
||+++.++...+..+|.++++.++..+.+ ..|||..|++.++..++..+..++ .||++++.++.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~-------------- 204 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVP-------------- 204 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccc--------------
Confidence 99999999999999999999999999988 579999999999887776555544 45543221100
Q ss_pred ccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh-HHHHHHHHHHHH
Q 016442 169 PLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA-VPWSVMAFTGYL 247 (389)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~ 247 (389)
++.+++..+++++.+++++.+...+..++..........+.+.|+.++.|+++.+.+.... ...++.+++.++
T Consensus 205 ------~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll 278 (491)
T PRK11010 205 ------KTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALY 278 (491)
T ss_pred ------cchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000112245677888888877766666666677677788888887778999999999874 556789999999
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHh-hHHHHHHHHHhhc-cchhhHHHHHHHHHhhhhccccccchhhhcccc-cchh
Q 016442 248 GGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSG 324 (389)
Q Consensus 248 ~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 324 (389)
+|++.||+++|+ ........ ......+...... ++.+......++.....+...+...+...+..+ +.++
T Consensus 279 ~G~L~dr~g~~~-------~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~ 351 (491)
T PRK11010 279 GGILMQRLSLFR-------ALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSA 351 (491)
T ss_pred HHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 999999999872 12211111 1111111112222 222222222222222222223334556666666 6889
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 325 VLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 325 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
+..|+.+....+|..+++.+.|++.|..| |...|.+.+++.+.+.+.....++
T Consensus 352 t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 352 TQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987 899999888888888777666543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=245.39 Aligned_cols=251 Identities=21% Similarity=0.261 Sum_probs=220.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.|.+.+.+++.++++++.+++|.+.||++..+.+....+++++..++.... +|++.+++.|+++|+.++..+|....+
T Consensus 81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es~~wP~~~~~ 158 (495)
T KOG2533|consen 81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--HSFPGLIALRFLLGLFESGGWPGVVAI 158 (495)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 368899999999999999999999999999999999999999888888888 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh------cccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM------SQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
++.|+.++||++.++++.+..++|.++|..++..+. ...||||.|++.+++.++..++.++..|+.|++.+-.+
T Consensus 159 lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~ 238 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT 238 (495)
T ss_pred HHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccc
Confidence 999999999999999999999999999999998863 34689999999999999999999999999998776666
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
++|++...++.+....... .++.++..+++.+++|++|...+..++.....+++.+|+|.|+++..|++..+++.+..
T Consensus 239 ~~ek~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~ 316 (495)
T KOG2533|consen 239 DEEKELVVERLRESPSGGI--ENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLST 316 (495)
T ss_pred hHHHHHHHHHHHhccCCCc--ccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccc
Confidence 6665444333322211111 11156678889999999999999999999999999999999999966799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016442 236 VPWSVMAFTGYLGGLLSDMLI 256 (389)
Q Consensus 236 ~~~~~~~~~~~~~g~l~d~~~ 256 (389)
...++++++.++.|.++||++
T Consensus 317 ~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 317 PYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred hHHhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999953
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=237.24 Aligned_cols=341 Identities=16% Similarity=0.183 Sum_probs=253.8
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
|++.|++.+.+.+.+.+++|+.|+++|||+||+++.+|..++.++.+.++++ ..+|+++++|.+.|+|.+...|..++
T Consensus 67 ~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s 144 (493)
T KOG1330|consen 67 DSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPS 144 (493)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchh
Confidence 4678999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC-cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 159 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
+++|.+|.++|++.+++++.+.++|..+|.+++..+.++.+ |||.|+..+++++++.++.+++.+|+++..+++.+.+
T Consensus 145 ~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~- 223 (493)
T KOG1330|consen 145 LIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGE- 223 (493)
T ss_pred HhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccC-
Confidence 99999999999999999999999999999999999988766 9999999999999999999888888775432111100
Q ss_pred HHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---hccccchhhhhhhH
Q 016442 160 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV---YHIDLRQASWFSAV 236 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~ 236 (389)
.+.........++.+.+.|+|.+....+.+....+....+..|.|.+.... .|.+..+..++..+
T Consensus 224 ------------~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~v 291 (493)
T KOG1330|consen 224 ------------NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGV 291 (493)
T ss_pred ------------CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhH
Confidence 001122334556777788888777777777777777777777777766543 34455556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc-h-hhHHHHHHHHHhhHHHHHHHHHhhcc--chhhHHHHHHHHHhhhhccccccc
Q 016442 237 PWSVMAFTGYLGGLLSDMLIQRGTS-V-TLTRKILQSIGFIAPGIALIGLTAAK--SPVMASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 237 ~~~~~~~~~~~~g~l~d~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
...++.+|.+.+|.++||+.++.++ . ..........+.......+....... +.+..+.+++++.......+....
T Consensus 292 t~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~ 371 (493)
T KOG1330|consen 292 TCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNN 371 (493)
T ss_pred HHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccccc
Confidence 8888999999999999998774222 1 11111222222222223333333222 223334444445555555555554
Q ss_pred hhhhcc-cccchhHHHHHHHHHhh-hhhhHHhHHHHHHHhhhhhHH
Q 016442 313 VNLQEI-APQYSGVLHGISNTAGT-FAAILGTVGAGFFVELVGSFQ 356 (389)
Q Consensus 313 ~~~~~~-~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g~~~ 356 (389)
-+..++ +|+.|.++.++...+.. +|.+-+|.+.|.+.|+.-++.
T Consensus 372 ~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 372 PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 444554 55899999999888776 555556669999999754343
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=238.52 Aligned_cols=332 Identities=16% Similarity=0.100 Sum_probs=240.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+|.|++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+++..+. .+|++.+++.|++.|+|.+...+..++
T Consensus 38 ~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~ 117 (410)
T TIGR00885 38 FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANP 117 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhH
Confidence 4678999999999999999999999999999999999999999998864431 268999999999999999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc--------------------------cCcchhHHHHhhHHH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------------------------AGIFGPFVIFGLSGF 134 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------------------------~~w~~~f~~~~~~~~ 134 (389)
++.+..|+++|++.+++.+...++|..++|.+++.+... .+||++|++.+++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~ 197 (410)
T TIGR00885 118 YILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVL 197 (410)
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877422 369999999888777
Q ss_pred HHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 016442 135 LWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSW 214 (389)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (389)
+..+...+. +.++.++++ + ++++..++.++++|+|+++...+..+++...+.+..++
T Consensus 198 ~~~~~~~~~-~~p~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~ 254 (410)
T TIGR00885 198 AVALLIMLT-KMPALNHSD---------------------A-KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTF 254 (410)
T ss_pred HHHHHHHHh-cCCCCCccc---------------------c-ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Confidence 655444332 221111100 0 00111224557889999998888888888888888899
Q ss_pred hhHHHHHHh-ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhH
Q 016442 215 MPIYFNFVY-HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMA 293 (389)
Q Consensus 215 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (389)
++.|.++.. +.+....+...+.......+++++++++.||+++| ...........+..+.....++....
T Consensus 255 l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~---------~~l~i~~~~~~~~~ll~~~~~~~~~~ 325 (410)
T TIGR00885 255 IIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH---------KVLMAYAIIGMALCLGSIFAGGHVGL 325 (410)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 999997632 33334445566666778899999999999999888 23333344444444444444443444
Q ss_pred HHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh-----hhHHHHHHHHHHHHH
Q 016442 294 SAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELV-----GSFQGFLLLTSLLYF 367 (389)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-----g~~~~~~~~~~~~~~ 367 (389)
....+.+.+...++ |.......+..+++..++.+...+. .+|+.+.|++.|.+.|.. |+++..|++...+.+
T Consensus 326 ~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 326 YCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 44555565555555 5555555555554444433333332 399999999999999964 347777776544443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=233.04 Aligned_cols=368 Identities=16% Similarity=0.105 Sum_probs=265.3
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
.+.+.+++.+|.++|++..|.++||+|||..+.++.++..++.++..++. .+++..+.++|++.|+..+......+.++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999888888766543 37899999999999999999999999999
Q ss_pred hcccCcCchhhHHHHHHhhhhhhhhhhhhhhh--HhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC--CcCcHHH
Q 016442 83 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSP--ILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--PQISKYE 158 (389)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~--~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (389)
.|..|++.||..-...+.+..+|..++..++. .+.+...|++.+....+++++..+...++ ||+|+.. ++.+++|
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~-PESPk~Ll~~k~~~~~ 220 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFL-PESPKYLLIKKGDEEE 220 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHcCCHHH
Confidence 99999999999999999999999999987773 33345569999999998888866655554 7777643 2445555
Q ss_pred HHHHHHhcCCccc-----------cCCCCCCCCCchhHHHhhcchhHHHHHHHH----HHHH-HHHHHHHHhhhHHHHHH
Q 016442 159 LEYILREKQKPLL-----------MGNKHKPATVIPPFRRLLSKMPTWSIIVAN----AMHS-WGFFVILSWMPIYFNFV 222 (389)
Q Consensus 159 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~ 222 (389)
+++..+..+...+ .++++.++....+++++++||+.+.-.... +.+. .+.+....|...++++
T Consensus 221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~- 299 (485)
T KOG0569|consen 221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT- 299 (485)
T ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-
Confidence 5444333222211 011122223556788999987655432222 2222 2445566666667776
Q ss_pred hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-------hccch--hhH
Q 016442 223 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-------AAKSP--VMA 293 (389)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~ 293 (389)
.|+++.++-+.....+....+..+++.++.||.||| .+...+..++.+..+.+. ....+ +..
T Consensus 300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR---------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~ 370 (485)
T KOG0569|consen 300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR---------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC 370 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 699999999999999999999999999999999999 333333333333322221 11111 112
Q ss_pred HHHHHH-HHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHH-HHHHHHHH
Q 016442 294 SAWLTL-AIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLT-SLLYFLSA 370 (389)
Q Consensus 294 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~-~~~~~~~~ 370 (389)
+.+.+. ...+.....|..+.+.+|++| +.|+.++++...+..+.+++-...+..+.+..|. ..|+.. ..+.+..+
T Consensus 371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLI 448 (485)
T ss_pred HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHH
Confidence 233333 333334445677888999998 7999999999999999999999999999999985 444444 44444455
Q ss_pred HHHHHhccCCcccc
Q 016442 371 LFYIIFSTGERVNF 384 (389)
Q Consensus 371 ~~~~~~~~~~~~~~ 384 (389)
..+..++++|.++.
T Consensus 449 ~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 449 YLYRYLPETKGRTP 462 (485)
T ss_pred HHHHhCcccCCCCH
Confidence 56666777776553
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=235.94 Aligned_cols=330 Identities=12% Similarity=0.056 Sum_probs=237.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCe----ehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGK----IIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPA 77 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 77 (389)
+++|++.+++.++..++++++|++.||+||| +.+.+...+. ........ ++++.+++.|++.|++.+...|.
T Consensus 39 ~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l~i~~~l~g~~~~~~~~~ 114 (382)
T PRK11128 39 ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA--HSFWLLFVAIGLFNLFFSPLVPL 114 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc--ccHHHHHHHHHHHHHHHcccccH
Confidence 4788999999999999999999999999994 3333222222 22233345 88999999999999999989999
Q ss_pred hHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHH
Q 016442 78 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY 157 (389)
Q Consensus 78 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
..++..++ +++|+++++......++|..+||++++.+.+++|||..|+..++..++..+. ....||++++.+ +
T Consensus 115 ~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~---~- 187 (382)
T PRK11128 115 TDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTIMPQGE---S- 187 (382)
T ss_pred HHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCCCCccc---c-
Confidence 88888887 4678889999999999999999999999999999999998877655444333 233333211110 0
Q ss_pred HHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHH
Q 016442 158 ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVP 237 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (389)
+++.++..+++++++|+|+++...+..++.........++.|.|+++ .|.++.+.+.+.+..
T Consensus 188 -----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~ 249 (382)
T PRK11128 188 -----------------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLG 249 (382)
T ss_pred -----------------ccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHH
Confidence 00011123467899999999988888888877777888888999977 799999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhc
Q 016442 238 WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQE 317 (389)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (389)
.+..++..++.+++.||+++| .....+....++........++.+..+...++.....+...+....+..+
T Consensus 250 ~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 320 (382)
T PRK11128 250 VVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAA 320 (382)
T ss_pred HHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999888 33344444555444444444555544443333333333344555566666
Q ss_pred ccccchhHHHHHHHHH-hhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 016442 318 IAPQYSGVLHGISNTA-GTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 318 ~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 371 (389)
.+++++++..+..+.. ...|..++|.+.|.+.|+.| . ..+...+++.+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 321 RPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF 373 (382)
T ss_pred CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence 6666778899988744 56777999999999999987 4 455555555554433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=239.26 Aligned_cols=344 Identities=20% Similarity=0.171 Sum_probs=266.3
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhh---cccchHHHHHHHHHhhhhhccchhhhH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA---ADTSLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
+++++.++..+...+.++++|.++||++||++++.+..+.++..+..++. ...+.+.+++.-++.|++.+...|+.+
T Consensus 46 ~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~ 125 (524)
T PF05977_consen 46 MVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQ 125 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999998887665544332 235788999999999999999999999
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHH
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 159 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
+++.|..|+++..+++++.+...++..++||.++|.+....|-.+.|.+.++..++........+++.++++. +
T Consensus 126 A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~--~---- 199 (524)
T PF05977_consen 126 AIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSL--P---- 199 (524)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc--c----
Confidence 9999999999999999999999999999999999999998899999999888766655544444333221111 0
Q ss_pred HHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHH
Q 016442 160 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS 239 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (389)
+++..++.++.++.+.++|.+....+..++...........+|.+.++.+|.++...|++.+..++
T Consensus 200 --------------~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gv 265 (524)
T PF05977_consen 200 --------------RERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGV 265 (524)
T ss_pred --------------hhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHH
Confidence 011122334567777778887777666666666666777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhccc
Q 016442 240 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIA 319 (389)
Q Consensus 240 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (389)
+.++++++.+++.+|++++ .++..+.+..+...+.+...++.+......++.+...........+..++..
T Consensus 266 Gai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~ 336 (524)
T PF05977_consen 266 GAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSV 336 (524)
T ss_pred HHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999888877665 3334455556666666666666655555544444444444445555666666
Q ss_pred c-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 320 P-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 320 ~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
| +.||++++++.+....+..+|..+.|.+.|..| ....+.+.++..+++.++....
T Consensus 337 P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 337 PDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 6 799999999999999999999999999999998 7777777777666666655544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-30 Score=232.00 Aligned_cols=344 Identities=11% Similarity=0.070 Sum_probs=235.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhc-----CCee-hhHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccc
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYY-----GGKI-IMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVA 74 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~ 74 (389)
+|+|++...... .+..+++|+++||+ |||| .+..+..+.+++.....+.. .++++.+++..++.++..+..
T Consensus 34 ~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 111 (402)
T PRK11902 34 QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQ 111 (402)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHH
Confidence 467777665554 58899999999999 8875 78888888888877777652 245788888888889888999
Q ss_pred hhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-cCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCc
Q 016442 75 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ 153 (389)
Q Consensus 75 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
.++..+++.|++|+|||+++.++...+.++|..+++.+++.+.+. .|||..|++.++..++..+.. +..||+++++++
T Consensus 112 ~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~ 190 (402)
T PRK11902 112 DIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPEVPARP 190 (402)
T ss_pred HHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccc
Confidence 999999999999999999999999999999999999999999885 599999999888776655443 334444322111
Q ss_pred CcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhh
Q 016442 154 ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF 233 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (389)
. ++ .+++..+++++++|||.++...+..++..........+.+.++.+++|+++++.+.+
T Consensus 191 ~-~~-------------------~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~ 250 (402)
T PRK11902 191 P-RS-------------------LGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIV 250 (402)
T ss_pred c-ch-------------------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 0 00 001123467789999999887777676666554444455666777689999999998
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh-hHHHHHHHHHhhc-cchhhHHHHHHHHHhh----hhc
Q 016442 234 SAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIALIGLTAA-KSPVMASAWLTLAIGM----KSF 306 (389)
Q Consensus 234 ~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~ 306 (389)
....+ ++.+++.++.+++.||+++|+ ........ ......+...... ++.+.......+.... ...
T Consensus 251 ~~~~~~~~~i~g~~~~g~l~~r~g~~~-------~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 323 (402)
T PRK11902 251 NKTLGLAATIVGALAGGTLMVRLGLYR-------SLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAA 323 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 76554 457889999999999999872 22111111 1111122222222 3333333222221112 222
Q ss_pred cccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
.......+.++..| ++..+..+....++..+++.+.|.+.|+.| +...|...+++.+++.++....+++
T Consensus 324 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 324 FVALLMALCNRSFS---ATQYALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23333344444444 444566666667888777889999999998 8888888888887776665554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=224.16 Aligned_cols=342 Identities=20% Similarity=0.168 Sum_probs=270.5
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
++++|++.+++.+.+.+..++.|.+.||+|+|..+++|.+++..+++++++. ++++.++++|.+||+|.++..++..+
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 4789999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhcccCcCc-hhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHH
Q 016442 81 MVARWFPQTE-RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYEL 159 (389)
Q Consensus 81 ~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (389)
+++|.+|+++ |++++|+.-.+.++|..+||+.||.+++..|.+.+|++.+++.++...+.++..++.+.+.+
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~------- 255 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD------- 255 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc-------
Confidence 9999998764 89999999999999999999999999999999999999999999988888877655433321
Q ss_pred HHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHH
Q 016442 160 EYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS 239 (389)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (389)
..++..++++++++|..+.........+.+......-++.++.|.+..+.-+.|+.+....+
T Consensus 256 ------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~ 317 (464)
T KOG3764|consen 256 ------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASL 317 (464)
T ss_pred ------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeeccccc
Confidence 12223467799999999888877777777777777888888888877444489998888999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHH---HHHHHHhhh-hccccccchhh
Q 016442 240 VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASA---WLTLAIGMK-SFSHSGFLVNL 315 (389)
Q Consensus 240 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~ 315 (389)
...++..+.|.+.||+++. ++.....+++..+......+..++....+. ...++.+.. ....|......
T Consensus 318 ~y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lv 390 (464)
T KOG3764|consen 318 SYAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLV 390 (464)
T ss_pred chhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhc
Confidence 9999999999999999965 335555566666655555555444332222 222222222 12222222222
Q ss_pred hccccc---chhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 316 QEIAPQ---YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 316 ~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.....+ .-|...++......+|.++||.+.|.+.+..| +.+.....++..++-.-++.+++
T Consensus 391 d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 391 DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 56899999999999999999999999999998 87777777766666555444443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=264.96 Aligned_cols=336 Identities=15% Similarity=0.088 Sum_probs=238.9
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHH---HHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAW---GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
.++..+++.++++++++++|+++||+|||+++.. .........+..... +|++.++++|+++|++.+...|+..+
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--NSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 5677888999999999999999999999997543 222233333333445 79999999999999999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
++.|++|+++|++++|+.+++.++|.++||.+++++.+..+|++.|....+..++..+..++. +++++..+..+.+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI-PKTGNAAPDLKID--- 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCCeec---
Confidence 999999999999999999999999999999999999999999999955555444444444443 3332221110000
Q ss_pred HHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
....++....++.+.++|.++...+..++.++....+..++|.|+++.+|.++.+.+++.+...++
T Consensus 208 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g 273 (1140)
T PRK06814 208 --------------RNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVG 273 (1140)
T ss_pred --------------cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 000011223577888999999988888888888888889999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH--HHH------------------hhccchhhHHHHHHHH
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL--IGL------------------TAAKSPVMASAWLTLA 300 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~~~~~~~~~ 300 (389)
.+++.++.+++.|+..+++... .+.++.++.. +.+ ...++.+......++.
T Consensus 274 ~~ig~~~~g~l~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1140)
T PRK06814 274 VAVGSFLASKLSEGRITLLYVP---------IGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGL 344 (1140)
T ss_pred HHHHHHHHHHHhCCceeeeeeh---------HHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHH
Confidence 9999999999998766553211 1111111111 111 0112223333322222
Q ss_pred Hhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 016442 301 IGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 368 (389)
+.+.+...+...++.++..| +.+|+++|+.++..+++..+++.+.|.+.+...++...+.+.+.+.++
T Consensus 345 g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 345 AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 33333344445556566555 899999999999999999999999999986544466665555444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=235.84 Aligned_cols=350 Identities=15% Similarity=0.086 Sum_probs=226.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh-hccc-----chHHHHHHHHHhhhhhccch
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-AADT-----SLLALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~l~~~r~l~G~~~~~~~ 75 (389)
+|+|++.+.+.++..++++++|+++||+|||+++.++..+.+++...... ...+ .....++.++..|.+.....
T Consensus 46 ~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (420)
T PRK09528 46 TDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGA 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 46789999999999999999999999999999998877666554432211 1001 11112333444444433334
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+....+..+. ++++++.++......++|..++|.+++.+.+ .+|++.|++.++..++..+..++..++++++.+..+
T Consensus 126 ~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (420)
T PRK09528 126 GAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN 202 (420)
T ss_pred hhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc
Confidence 4444443322 3467788899999999999999999999876 489999999888887766666655544433211000
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh---ccccchhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY---HIDLRQASW 232 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~ 232 (389)
++ ++++++...++.++.+|||+++...+..+.....+.....+.|.|+.+.. +.+..+.+.
T Consensus 203 -~~---------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 266 (420)
T PRK09528 203 -AL---------------GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGY 266 (420)
T ss_pred -ch---------------hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 00 00111222345667889998877666555555555566667788877643 455567788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
+.+...+...++.++.|++.||+++|+ ....+....+.........++.+.......+.........+...
T Consensus 267 ~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 267 LNSFQVFLEALIMFFAPFIINRIGAKN---------ALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcch---------hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999983 22333333333333344344444433332222222222223333
Q ss_pred hhhhcccc-cchhHHHHH-HHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016442 313 VNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTGE 380 (389)
Q Consensus 313 ~~~~~~~~-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
.+.++..| +.+++..+. .+....+|..++|.+.|++.|..| ++..|...+++.++..+......+++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555445 788887665 677888999999999999999988 88888887777766665555443333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=237.15 Aligned_cols=364 Identities=21% Similarity=0.224 Sum_probs=290.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHH-HHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAM-RAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~ 80 (389)
+|++|+.++..-...+..|+.+.+.||+|.|.+.+.|.++..++.++..++ +++|++++. -++.|+|.+..+.....
T Consensus 81 ~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~--~~i~~l~lt~gvi~G~G~~~~~~paiv 158 (509)
T KOG2504|consen 81 SQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA--TSLWQLYLTFGVIGGLGLGLIYLPAVV 158 (509)
T ss_pred cHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhccchhhhcchhh
Confidence 467899999999999999999999999999999999999999999999999 999887655 58899999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
++..++ +|+|+.+.|+...+.++|.++-|.+...+.+.+|||+.+++.+.+.+-.++.....+|..++..+. ..++.+
T Consensus 159 iv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~ 236 (509)
T KOG2504|consen 159 ILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLR 236 (509)
T ss_pred hhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhc
Confidence 999998 589999999999999999999999999999999999999999999888777777777754443222 000000
Q ss_pred HHH------------Hh-cCCcccc-----------CCCCCCC--CCchhH----HHhhcchhHHHHHHHHHHHHHHHHH
Q 016442 161 YIL------------RE-KQKPLLM-----------GNKHKPA--TVIPPF----RRLLSKMPTWSIIVANAMHSWGFFV 210 (389)
Q Consensus 161 ~~~------------~~-~~~~~~~-----------~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (389)
... +. .+..... +.+.+.+ ...... .+++++|.++.+.+...+...++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~ 316 (509)
T KOG2504|consen 237 NSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNV 316 (509)
T ss_pred cccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 000 00 0000000 0000000 111122 4789999999999999999999999
Q ss_pred HHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccch
Q 016442 211 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP 290 (389)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (389)
...++|.|.++ .|++..++..+.+..++..++++++.|++.|+...+ +..+..++.+..++.....+..++.
T Consensus 317 p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~~~~ 388 (509)
T KOG2504|consen 317 PFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR-------ALVLFLLTLLIAGLARLFLPFATTY 388 (509)
T ss_pred HHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc-------hHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999999996 799999999999999999999999999999998855 3466677777777777777776666
Q ss_pred hhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 016442 291 VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS 369 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 369 (389)
+......++.+...+........++.+..+ +.-..+.|+...+..++..+||++.|++.|..|+|...|+.++++.+++
T Consensus 389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s 468 (509)
T KOG2504|consen 389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLS 468 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHH
Confidence 555444444444444444555556666666 8889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhc
Q 016442 370 ALFYIIFS 377 (389)
Q Consensus 370 ~~~~~~~~ 377 (389)
...+++.+
T Consensus 469 ~~~~~~~~ 476 (509)
T KOG2504|consen 469 AVLLLILR 476 (509)
T ss_pred HHHHHHhH
Confidence 87776655
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=228.02 Aligned_cols=343 Identities=14% Similarity=0.077 Sum_probs=234.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHh---hhhc---ccchHHHHHHHHHhhhhhccch
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAA---DTSLLALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~---~~~~~~l~~~r~l~G~~~~~~~ 75 (389)
++.|++.+.+.++..+++++.|+++||+|||+.++.+....+++.... .+.. .+.+..+++.|++.|++.+...
T Consensus 38 ~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 117 (396)
T TIGR00882 38 TDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGA 117 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccch
Confidence 467889999999999999999999999999999988877666544332 1110 0123445777899999988888
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+....+..|.. +++++.++......++|..+||.+++.+.+ .+||..|++.+.+.++..+..+...|++|+++++
T Consensus 118 ~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (396)
T TIGR00882 118 GAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATV-- 192 (396)
T ss_pred hhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhh--
Confidence 88888887754 344567788888889999999999998865 5999999999888887766665554444322110
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh---ccccchhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY---HIDLRQASW 232 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~ 232 (389)
++ .. ++++++++.++.++++|||+++...+..++....+.....+.|.|+++.+ +.+....+.
T Consensus 193 -~~-------~~------~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~ 258 (396)
T TIGR00882 193 -AN-------AL------GANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGY 258 (396)
T ss_pred -hc-------cc------ccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 00 00 00111223356788999999887777666666666667778888888754 445566788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
..+...+...++....+++.||+++|+ ...++....++........++.+......++.............
T Consensus 259 ~~~~~~i~~~~~~~~~g~l~~r~g~~~---------~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 259 VTTMGELLNALIMFCAPLIINRIGAKN---------ALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999982 22333333333333333334444333322222221111111222
Q ss_pred hhhhcccc-cchhHHHHH-HHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 016442 313 VNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 313 ~~~~~~~~-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 373 (389)
.+.++..| +.+++..+. .+....+|+.++|.+.|++.|..| +...|.+.+++.++..+..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence 33444444 677776666 678889999999999999999987 8899988888776665543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=257.05 Aligned_cols=336 Identities=17% Similarity=0.145 Sum_probs=236.5
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhh---hhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP---WAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
.+++.+++.+++.++++++|+++||+|||++++++.++..+..++.. .. ++++.+++.|+++|++.+...++..+
T Consensus 49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--GWFWLAFAVTFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHhhchHHHh
Confidence 57888999999999999999999999999999999877666555433 34 78999999999999999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc--------c-CcchhHHHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------A-GIFGPFVIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+++|++|+++|++++++.+.+.++|.++|+.+++++.+. . +|++.+.+..+...+..++..+..|+.++..
T Consensus 127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1146)
T PRK08633 127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAA 206 (1146)
T ss_pred hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCC
Confidence 999999999999999999999999999999999999875 2 3444444444333333333333345444332
Q ss_pred CcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc-hh
Q 016442 152 PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLR-QA 230 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ 230 (389)
+...+.+ .....+.....++.++++|.++...+..++..........++|.|+++.+|++.. +.
T Consensus 207 ~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 271 (1146)
T PRK08633 207 PEVFDKK---------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQV 271 (1146)
T ss_pred ccccccc---------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHH
Confidence 2110000 0001111234567788889888887777777777777888999999998999998 89
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccc
Q 016442 231 SWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSG 310 (389)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
+++.+...++.+++.++.+++.||+++++. ..++.++.++..+.+....+.+......++.....+...+.
T Consensus 272 g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 272 QYLLAASAIGIGIGSLLAGRLSGRHIELGL---------VPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceEccc---------hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999887632 22233333333333333333333333333333333334444
Q ss_pred cchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 311 FLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 311 ~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
..++..+..| +.||+++|+.+.+.+++..+++.+.+.+......+...+.+.+.+
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 5566666665 799999999999999999888877766654211234444444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=223.13 Aligned_cols=336 Identities=13% Similarity=0.052 Sum_probs=228.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCC-eehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+|+|++.+++.++..++++++|.++||+|| |+++.++..+.+++..+..+. +|++.+++.|++.|++.+...+...+
T Consensus 38 ~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 115 (418)
T TIGR00889 38 AEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV--TTPAGMFPVLLANSLAYMPTIALTNS 115 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHccHHHHHHH
Confidence 588999999999999999999999999965 778888888888888888888 89999999999999988777777666
Q ss_pred HHh--------cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCC
Q 016442 81 MVA--------RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP 152 (389)
Q Consensus 81 ~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
+.. |......|.+.+| .+|..++|.+++.+....+|+ +|++.++..++..+..+ ..||+|++++
T Consensus 116 l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~ 187 (418)
T TIGR00889 116 ISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKS 187 (418)
T ss_pred HHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcc
Confidence 543 2232234555554 478888898888773333354 45566665555554433 4455443221
Q ss_pred cCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccc-----
Q 016442 153 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDL----- 227 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----- 227 (389)
+.+. + .++....+.++++|+|+++...+..++..........+.|.|+++ .|.++
T Consensus 188 ~~~~------------------~-~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 247 (418)
T TIGR00889 188 TAKM------------------S-IKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADS 247 (418)
T ss_pred cccc------------------C-HHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccch
Confidence 1000 0 000111234578899998888777777776666677888888877 46554
Q ss_pred ---chhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc-cch---hhHHHHHHHH
Q 016442 228 ---RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-KSP---VMASAWLTLA 300 (389)
Q Consensus 228 ---~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~ 300 (389)
...+...+...+..+++.+..+++.||+++| .++..+.+..++........ ... +......++.
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~ 318 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVY 318 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 4568888888889999999999999999988 33444444444443333322 111 2122222222
Q ss_pred Hhhhhccccccchhhhcccc-cchhHHHHHHH-HHhhhhhhHHhHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHH
Q 016442 301 IGMKSFSHSGFLVNLQEIAP-QYSGVLHGISN-TAGTFAAILGTVGAGFFVELVGS-----FQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~-----~~~~~~~~~~~~~~~~~~~ 373 (389)
....+...+....+..+..| +.|++++|+.+ ....+|..+||.+.|++.|+.|+ |+..|...+++.+++.+..
T Consensus 319 g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~ 398 (418)
T TIGR00889 319 GCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLF 398 (418)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 22223334454566677666 79999999997 56789999999999999998653 7888887777766665544
Q ss_pred HHh
Q 016442 374 IIF 376 (389)
Q Consensus 374 ~~~ 376 (389)
...
T Consensus 399 ~~~ 401 (418)
T TIGR00889 399 MIF 401 (418)
T ss_pred HHH
Confidence 443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-28 Score=205.04 Aligned_cols=332 Identities=16% Similarity=0.152 Sum_probs=251.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh-hcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW-AADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
.|.+++..+++.++.+.+++.|++.+|+|+|+.++.|+.++++++.+..= +...++..++++-++.|.|.+...++.+.
T Consensus 48 ~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp 127 (422)
T COG0738 48 FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANP 127 (422)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccch
Confidence 46788999999999999999999999999999999999999999998742 22378999999999999999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-------------------cCcchhHHHHhhHHHHHHHHHH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------------------AGIFGPFVIFGLSGFLWVLVWL 141 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------------------~~w~~~f~~~~~~~~~~~~~~~ 141 (389)
+++...|+++-.+.+++.+..+++|..++|.+++.+..+ ..|+++|...+...++..+...
T Consensus 128 ~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~ 207 (422)
T COG0738 128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLIL 207 (422)
T ss_pred HHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999999999988762 1378888887776666555544
Q ss_pred Hhc-cCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 016442 142 SAT-SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFN 220 (389)
Q Consensus 142 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (389)
..+ |+.++..+ ++.+.......+++|+|+++...+..+++........+|++.|+.
T Consensus 208 ~~k~p~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~ 264 (422)
T COG0738 208 LSKLPDLQVAAP-----------------------SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLE 264 (422)
T ss_pred hccCCcCCcccc-----------------------cccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 432 11111111 011111115668999999999999999999999999999999999
Q ss_pred HHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHH
Q 016442 221 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA 300 (389)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (389)
+..|.+..++....+....+.++|++++.++.+|+... +.+ .+..++....+......++.+......+++
T Consensus 265 ~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--------k~L-af~a~~~ill~~~~~l~~g~v~~~~l~~ig 335 (422)
T COG0738 265 ELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--------KYL-AFYALIAILLLLAVALIGGVVALYALFLIG 335 (422)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHH-HHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 97799999999999999999999999999999998877 233 333333333333344445555555555566
Q ss_pred HhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 016442 301 IGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 368 (389)
.+...+++.. .+...+..|++...+.++ ....-+|+++.|++.|++.|+.|. ...+......+.+
T Consensus 336 ~F~simfPTI-fslal~~l~~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g~-~~~~~~~pllc~l 400 (422)
T COG0738 336 LFNSIMFPTI-FSLALKNLGEHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFGI-QLTFLIVPLLCYL 400 (422)
T ss_pred HHhHHHHHHH-HHHHHhccCcccccccee-eeeheecchHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Confidence 6655555544 444444444555444444 466678999999999999999984 4444433333333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-28 Score=201.92 Aligned_cols=339 Identities=17% Similarity=0.230 Sum_probs=266.9
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++++...++..+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+......+++
T Consensus 47 s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPsl 123 (395)
T COG2807 47 SVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSL 123 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHH
Confidence 467899999999999999999999999999999999999999999987764 77889999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc-CcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELE 160 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
+.+.+| |+-+..++.|+...++|..+++.+...+.++. +||......+.++++..+.++....++. ..
T Consensus 124 IK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~-------- 192 (395)
T COG2807 124 IKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AA-------- 192 (395)
T ss_pred HHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cc--------
Confidence 999996 78899999999999999999999999998887 7999999999999998877776531110 10
Q ss_pred HHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH
Q 016442 161 YILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV 240 (389)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (389)
+.+.+..+-..++|||..|.+.+.+.+++..++....|+|.++.| .|+|+.++|.+.+...+.
T Consensus 193 ----------------~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~ 255 (395)
T COG2807 193 ----------------SIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLA 255 (395)
T ss_pred ----------------ccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHH
Confidence 000111122368999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcc-c
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI-A 319 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (389)
.+..++....+.+|...++ .............+..+...+........++++.+.++.++-....+..+. .
T Consensus 256 ~~~~~ll~P~la~R~~n~r--------~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~ 327 (395)
T COG2807 256 QLPTALLIPLLARRSKNQR--------PLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSD 327 (395)
T ss_pred HHHHHHHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCC
Confidence 9999999999999855442 222222233333333332222222222245566665555544444444443 3
Q ss_pred ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 320 PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 320 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
|++.++-.|+.+.++++-...||.++|++.|..|++...+.......+...+.-+...|+
T Consensus 328 a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 328 AAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred hHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 488999999999999999999999999999999999998887777766655555444443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=233.19 Aligned_cols=258 Identities=16% Similarity=0.188 Sum_probs=200.3
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc---------------------------
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--------------------------- 53 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--------------------------- 53 (389)
.++.|++.+.+.++++++.++.+++.||+|||+.+.++.++++++++++++..
T Consensus 67 s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~ 146 (633)
T TIGR00805 67 TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCM 146 (633)
T ss_pred CCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccccc
Confidence 36789999999999999999999999999999999999999999999987651
Q ss_pred ----------------------ccchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhh
Q 016442 54 ----------------------DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV 111 (389)
Q Consensus 54 ----------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 111 (389)
...+..++++|+++|+|.+...+...+++.|++|+++|++++++++....+|..+|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l 226 (633)
T TIGR00805 147 ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL 226 (633)
T ss_pred CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence 0025567899999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhccc----------------------CcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHH-HhcCC
Q 016442 112 LSPILMSQA----------------------GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL-REKQK 168 (389)
Q Consensus 112 l~~~l~~~~----------------------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (389)
+++.+.+.+ .||..|++.+++.++..+..++++++.|++.++.+.++.+... ++.+.
T Consensus 227 lgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~ 306 (633)
T TIGR00805 227 LGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSED 306 (633)
T ss_pred HHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhccccccc
Confidence 999987543 1667788888888777666665555544332211111000000 00000
Q ss_pred ccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHH-HHHHHHHH
Q 016442 169 PLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYL 247 (389)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 247 (389)
+...+.....++....++++++||.++...+..++.....+++.+++|.|+++++|+++.+++.+.....+ +.+++.++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l 386 (633)
T TIGR00805 307 KSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLI 386 (633)
T ss_pred ccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhh
Confidence 00000000111223457789999999999999999999999999999999999999999999998887666 56789999
Q ss_pred HHHHHHHHHHc
Q 016442 248 GGLLSDMLIQR 258 (389)
Q Consensus 248 ~g~l~d~~~~~ 258 (389)
+|+++||++.+
T Consensus 387 ~G~l~~r~~~~ 397 (633)
T TIGR00805 387 GGFIMKKFKLN 397 (633)
T ss_pred hhheeeeeccc
Confidence 99999999855
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=226.87 Aligned_cols=370 Identities=16% Similarity=0.107 Sum_probs=256.0
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
+.+|+.+++.++..+++++.|+++|++|||+.++.+.+.+.++.++++++ +|++.++++|+++|+|.|......+.++
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhH
Confidence 45899999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-cCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-CcCcHHHHH
Q 016442 83 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISKYELE 160 (389)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (389)
+|..|++.||...+..+....+|..++..++....+. .+||..+.+..+++++..+. .+..||+|+.. ++.+.++.+
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~ 246 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAK 246 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHH
Confidence 9999999999999999999999999996665555332 48999999999999988877 77778888754 334444444
Q ss_pred HHHHhcCCc--cccCCC-----------CCCCCCchhHHHhhc----chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 016442 161 YILREKQKP--LLMGNK-----------HKPATVIPPFRRLLS----KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY 223 (389)
Q Consensus 161 ~~~~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (389)
......... .+.+++ ....+....++++++ ++.+....+..+.+..+.+....|.+.+++. .
T Consensus 247 ~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~ 325 (513)
T KOG0254|consen 247 RSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-A 325 (513)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-c
Confidence 443333221 000000 000011112333333 2233344445555555667777888888777 4
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh----c--------cchh
Q 016442 224 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA----A--------KSPV 291 (389)
Q Consensus 224 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~ 291 (389)
|.+... .......++...++..++..+.||+||| .+...+...+.++...+.. . ...+
T Consensus 326 g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr---------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
T KOG0254|consen 326 GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR---------KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGW 395 (513)
T ss_pred CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhH
Confidence 655433 4445566777888888889999999999 3334444444433332221 0 1122
Q ss_pred hHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 016442 292 MASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS 369 (389)
Q Consensus 292 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 369 (389)
..+.. .+....+.....+..+.+..|.+| +.|+++.++......+.+.+-......+.+..+.....+.+.+++.+..
T Consensus 396 ~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~ 475 (513)
T KOG0254|consen 396 LAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSL 475 (513)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 22333 333344445555666788899999 8999999999999998888887777777666431223333444444444
Q ss_pred H-HHHHHhccCCcccccc
Q 016442 370 A-LFYIIFSTGERVNFDE 386 (389)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~ 386 (389)
. ..+...++.+.++.+|
T Consensus 476 ~~fv~~~~pETkg~slee 493 (513)
T KOG0254|consen 476 IIFVFFFVPETKGLTLEE 493 (513)
T ss_pred HHHheEEcccCCCCcHHH
Confidence 4 4555667776665543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-29 Score=208.60 Aligned_cols=348 Identities=15% Similarity=0.066 Sum_probs=226.1
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
.|.+.|.|++.+.+.++.+|.++||+|||++++.++...++...+.+.+ +|+..+.++|++.|+..|. .....++++
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kgn-l~v~rAiis 146 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKGN-LSVIRAIIS 146 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccCc-hHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 9997777779999999875 667789999
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc---ccCcchhHHH----HhhHHHHHHHHHHHhccCCCCCCCcCcH
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---QAGIFGPFVI----FGLSGFLWVLVWLSATSSTPDRHPQISK 156 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~---~~~w~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
|.+++|+|+++|+..+..+++|.++||.+|+++.+ ..| +.+|.. ..+....-.....++.||+-+.+++.++
T Consensus 147 dV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~ 225 (451)
T KOG2615|consen 147 DVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDE 225 (451)
T ss_pred hhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhccc
Confidence 99999999999999999999999999999999987 223 222222 2222222122333344554333222211
Q ss_pred HHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchh-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccch
Q 016442 157 YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP-------TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ 229 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (389)
.....+....+ ++..+.+ ...-...+||++ .....+-.+.+...+..+.+..+.+.++.+|+++.+
T Consensus 226 --~~~~~~~~~~~----~~~~~~~-~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~ 298 (451)
T KOG2615|consen 226 --HSTLQEAADDR----LALLKFA-RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQ 298 (451)
T ss_pred --ccchhhhhhhh----hhhcchh-hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhh
Confidence 00000000000 0000000 000012233332 223344555555556666666666666779999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhcccc
Q 016442 230 ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHS 309 (389)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
.|.+.+..++.+.+.+....+..||.+.. .+.........+.-.++..........+.....+-.+......+
T Consensus 299 ~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt 371 (451)
T KOG2615|consen 299 QGKVLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVT 371 (451)
T ss_pred heeeeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhH
Confidence 99998888777777666655555554411 11222333333333344444444444444444444444455556
Q ss_pred ccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 016442 310 GFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLS 369 (389)
Q Consensus 310 ~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 369 (389)
..+..++...| ++||+++|+....+.++.++||.+.|.+..+.-.-+..+..-+.+.+..
T Consensus 372 ~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 372 CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 66677777777 7999999999999999999999999998876432334444333333333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=223.76 Aligned_cols=320 Identities=15% Similarity=0.119 Sum_probs=226.8
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhh----cCCee-hhHHHHHHHHHHHHHhhhhcccc------hHHHHHHHHHhhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAADTS------LLALLAMRAVVGLA 70 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~ 70 (389)
+++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+. ++ ...+++.+++.+++
T Consensus 35 ~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 112 (437)
T TIGR00792 35 AFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT--PDFSATGKLVYAYITYILLGLF 112 (437)
T ss_pred HHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998 67744 6778888888888877766 43 45677788999999
Q ss_pred hccchhhhHHHHhccc-CcCchhhHHHHHHhhhhhhhhhhhhhhhHhh-------cccCcchhHHHHhhHHHHHHHHHHH
Q 016442 71 EGVALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILM-------SQAGIFGPFVIFGLSGFLWVLVWLS 142 (389)
Q Consensus 71 ~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-------~~~~w~~~f~~~~~~~~~~~~~~~~ 142 (389)
.+...++..++..|.. +++||++..++.+.+..+|..+++.+.+.+. +..+||+.+.+.+++.++..+...+
T Consensus 113 ~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 113 YSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred HHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888889999987 4689999999999999998888777665554 2458999999999888877666665
Q ss_pred hccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 016442 143 ATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV 222 (389)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (389)
..+|++++.+. +++++.+..+.++++++||+++...+..++...+......+.+.|.++.
T Consensus 193 ~~~e~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (437)
T TIGR00792 193 GTKERYSEIPK--------------------NIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYV 252 (437)
T ss_pred CCEecCCCCCc--------------------ccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeee
Confidence 55554322110 0111122345677889999999888888888777777766677777665
Q ss_pred hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc-cchhhHHHHHHHHH
Q 016442 223 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-KSPVMASAWLTLAI 301 (389)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 301 (389)
.+ ++.+.+.+.....++.+++.++.+++.||+++| .....+.............. ++.+......++..
T Consensus 253 ~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 322 (437)
T TIGR00792 253 LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK---------ILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAG 322 (437)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 55 456667777777889999999999999999988 22223333333322222222 22222222222222
Q ss_pred hhhhccccccchhhhccc--------ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 302 GMKSFSHSGFLVNLQEIA--------PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~--------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
...+...+..++...|.. ++.+|.+.|+.+....++..+++.+.|.+.|..|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222333344455554442 3568999999999999999999999999998765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=213.12 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=212.9
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhc-----CCeeh-hHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccc
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYY-----GGKII-MAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVA 74 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~ 74 (389)
+|+|+..+. .+...+ .+++|+++||+ ||||. ++.+..+.++.....++.. ..+.+.+....++.+++.+..
T Consensus 23 ~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~ 100 (356)
T TIGR00901 23 KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQ 100 (356)
T ss_pred HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 355666444 444554 88999999998 89987 5677777777766666652 135666777888889998988
Q ss_pred hhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC--------cchhHHHHhhHHHHHHHHHHHhccC
Q 016442 75 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG--------IFGPFVIFGLSGFLWVLVWLSATSS 146 (389)
Q Consensus 75 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~--------w~~~f~~~~~~~~~~~~~~~~~~~~ 146 (389)
.++..+++.|++|+|+|+++.++...+.++|.++++.+++.+.++.+ ||..|++.++..++..+..++..||
T Consensus 101 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e 180 (356)
T TIGR00901 101 DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKE 180 (356)
T ss_pred HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999988888 9999999998777766555555555
Q ss_pred CCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchh---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 016442 147 TPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMP---TWSIIVANAMHSWGFFVILSWMPIYFNFVY 223 (389)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (389)
++++.++ ++++ +++.++++++++++|. ++...+..++..........+.|.|+++ +
T Consensus 181 ~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 239 (356)
T TIGR00901 181 PQEDASV-PKPL-------------------TQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-M 239 (356)
T ss_pred CCccccc-chhH-------------------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 4322111 0000 0011235667777775 7777777777778888889999999998 8
Q ss_pred ccccchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHH--HHh-hc--------cchh
Q 016442 224 HIDLRQASWFSAVPW-SVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI--GLT-AA--------KSPV 291 (389)
Q Consensus 224 g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~--------~~~~ 291 (389)
|+++++.+.+....+ +..+++.++++++.||+++|+ .. ..+.+..+.... .+. .. +..+
T Consensus 240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-------~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T TIGR00901 240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-------AL--LLFGIVQALTNAGFVWLASNGHHDGITFPHLL 310 (356)
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-------HH--HHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 999999998877655 567889999999999999882 22 222222222222 111 11 1223
Q ss_pred hHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhh
Q 016442 292 MASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGT 335 (389)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ 335 (389)
......++.....+...+....+..+..| ++||+.+|+.+...+
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 33333333334444555666777777766 899999999887764
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=216.43 Aligned_cols=370 Identities=13% Similarity=0.103 Sum_probs=246.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhh-cCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
++.|++.+.+.++..++++++|+++|| +|||+++.++..+.+++.++.+++ ++++.+++.|++.|+|.|...+...+
T Consensus 48 ~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~ 125 (475)
T TIGR00924 48 EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--IYPDLIFYGLGTIAVGSGLFKANPSS 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--ccHhHHHHHHHHHHhccccccCCHHH
Confidence 467889999999999999999999999 899999999999999999999988 88899999999999999999999999
Q ss_pred HHhcccCcCc---hhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccC---CCCCCCcC
Q 016442 81 MVARWFPQTE---RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS---TPDRHPQI 154 (389)
Q Consensus 81 ~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 154 (389)
+++|++|+++ |++++++.+...++|..+||.+++++.++.|||+.|++.++..++..+......+. .|+++++.
T Consensus 126 ~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (475)
T TIGR00924 126 MVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPL 205 (475)
T ss_pred HHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCc
Confidence 9999998764 88899999999999999999999999998999999999876555544333333222 11111111
Q ss_pred cHHHHHHHHHh----------------cCCccccC-------------CCCCCCCCchhHHHhhcchhHHHHHHHHHHHH
Q 016442 155 SKYELEYILRE----------------KQKPLLMG-------------NKHKPATVIPPFRRLLSKMPTWSIIVANAMHS 205 (389)
Q Consensus 155 ~~~~~~~~~~~----------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (389)
++++.+..... ..+..... ......++..+..+-.|...+..+.+...+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 285 (475)
T TIGR00924 206 SGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFW 285 (475)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHH
Confidence 11111100000 00000000 00000000001111122234555566666677
Q ss_pred HHHHHHHHhhhHHHHHHhccccch----hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH
Q 016442 206 WGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL 281 (389)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
..+....+.++.+.++..+.+... .+++.+...+..++..++..++..|..||+.......+. .++.+..++++
T Consensus 286 ~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~--~~G~~l~~~~~ 363 (475)
T TIGR00924 286 VLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF--TLGMLFCGASF 363 (475)
T ss_pred HHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH--HHHHHHHHHHH
Confidence 777787888888887754443222 567777888888887777667777777753322221122 33344443333
Q ss_pred HHHhh---------ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhh
Q 016442 282 IGLTA---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL 351 (389)
Q Consensus 282 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 351 (389)
..... ..+.++.+...++.........+.......+..| +.||+.+|+......+|..+++.+.....+.
T Consensus 364 ~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 364 LTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33221 2344444444444445555666677777777766 7999999999999999999999998887776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 352 VGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+ +...|...++..++..++.+..
T Consensus 444 ~~-~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 444 QG-VTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred cc-hhhHHHHHHHHHHHHHHHHHHH
Confidence 55 6667766666665555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=211.25 Aligned_cols=364 Identities=12% Similarity=0.094 Sum_probs=223.8
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhh-cCCeehhHHHHHHHHHHHHHhhhhcccchHH-HHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLA-LLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~ 79 (389)
++.+++.+.+.....+..+++|+++|| +||||++..+..++.++.+.+.++ ++... ++++|+++|+|.|...|...
T Consensus 50 ~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~~~~~ll~~~~~l~~ig~g~~~~~~~ 127 (489)
T PRK10207 50 EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--LLKPDLIFIALGTIAVGNGLFKANPA 127 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHhccccccCCHH
Confidence 345677888888888888999999999 999999999999999999999988 66444 55899999999999999999
Q ss_pred HHHhcccCcC--chhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCC----CCc
Q 016442 80 NMVARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR----HPQ 153 (389)
Q Consensus 80 ~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 153 (389)
++++|.+|++ +|++++++++.+.++|..+||.+++++.++.|||+.|++.++..++ .++.+...++..++ +++
T Consensus 128 ~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~-~~~~~~~~~~~~~~~~~~~~~ 206 (489)
T PRK10207 128 SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLII-ALLVYFACRGMVKDIGSEPDH 206 (489)
T ss_pred HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH-HHHHHHHcchhhcccCCCCCc
Confidence 9999999877 4578999999999999999999999999999999999986553333 33322222211111 111
Q ss_pred CcHHHHHHH------------HHhcCCc-cc----------------cCCCCCCCCCchhHHHhhcchhHHHHHH--HHH
Q 016442 154 ISKYELEYI------------LREKQKP-LL----------------MGNKHKPATVIPPFRRLLSKMPTWSIIV--ANA 202 (389)
Q Consensus 154 ~~~~~~~~~------------~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 202 (389)
.+.+..... ....... .. ..++ .+. ++.+|+|.+....+ ...
T Consensus 207 ~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~-~~~------~~~~r~r~~~~~~l~~~~~ 279 (489)
T PRK10207 207 KPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREA-FKL------DKTGRNKMFVAFVLMLEAV 279 (489)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hcC------CHHHHHHHHHHHHHHHHHH
Confidence 011100000 0000000 00 0000 000 13455555443322 244
Q ss_pred HHHHHHHHHHHhhhHHHHHHhccccc----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHH
Q 016442 203 MHSWGFFVILSWMPIYFNFVYHIDLR----QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG 278 (389)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
+....+....+.++.+.++..+.+.. ....+.....+..++..++.+++.||.++|+.......+......+...+
T Consensus 280 ~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 280 VFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred HHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 44555666667788887753332110 12333444556666778888999999999864333333333322222222
Q ss_pred HHHH-----HHhhc---cchhhHH-HHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 279 IALI-----GLTAA---KSPVMAS-AWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 279 ~~~~-----~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
.... ..... .+.++.+ ...+.+.+.....++.......+.+++.+|.++|+.+...++|+.++..+.....
T Consensus 360 ~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 360 FLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111 11111 1223333 3333444444444444444555555589999999999999999999988876552
Q ss_pred h---------hhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 350 E---------LVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 350 ~---------~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
. ..+.+...|...++..+++.++++.
T Consensus 440 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 440 VPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112566777666666555554444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-26 Score=205.97 Aligned_cols=335 Identities=13% Similarity=0.075 Sum_probs=229.3
Q ss_pred CcCcch--hHHHHHHHHHhhhhh-hhhhhhcCCeehhHHHHHHH-HHHHHHhh-hhcccc-hHHHHHHHHHhhhhhccch
Q 016442 2 AGADRF--PSSFLWGYLVSPIAG-GTLVDYYGGKIIMAWGVALW-SLATFLTP-WAADTS-LLALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 2 ~~~g~~--~s~~~~~~~~~~~~~-G~l~dr~Grr~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~l~~~r~l~G~~~~~~~ 75 (389)
+++|++ .+...+...+.+|++ ++..||+||||..++...+. +....... +...++ ...++..-.+.++..+...
T Consensus 36 ~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d 115 (390)
T TIGR02718 36 TALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQD 115 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 456665 356677777788888 44789999999875555332 21222222 111122 3344555566667778888
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
+...++..|..++++++...+....+..+|..+|+...+++.++.|||..|++.++..++..+..++.+|++++++++
T Consensus 116 ~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-- 193 (390)
T TIGR02718 116 IATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEA-- 193 (390)
T ss_pred HHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc--
Confidence 889999999998888899999999999999999999999999999999999999988877666665554443321110
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
+++...++++.+|+|.++......++...+......+.+.|++| .|+++++.+.+..
T Consensus 194 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~ 250 (390)
T TIGR02718 194 ----------------------PLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGM 250 (390)
T ss_pred ----------------------chhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHh
Confidence 00112356788999998888888888888888888899999988 6999999999888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH-HHHHHHHh--h---ccchhhHHHHHHHHHhhhhccc
Q 016442 236 VPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP-GIALIGLT--A---AKSPVMASAWLTLAIGMKSFSH 308 (389)
Q Consensus 236 ~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
.... ...++.++.|++.||+++|+ ... .+.... ........ . ............+.....+...
T Consensus 251 ~~~~~~~~~g~~~~g~l~~r~g~~~-------~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 321 (390)
T TIGR02718 251 AGGAVTVLLGCGGGAWLVRRAGLWR-------TFI--LGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITS 321 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH-------HHH--HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 7764 56677899999999999882 222 222212 11111111 1 1111222222222222223333
Q ss_pred cccchh-hhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 016442 309 SGFLVN-LQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 309 ~~~~~~-~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 371 (389)
+..... .....+ +++++.+++.+...++|..++|.+.|.+.|..| +...|...+++.+++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 322 VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence 333333 445555 789999999999999999999999999999987 88888887776666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=215.40 Aligned_cols=359 Identities=16% Similarity=0.103 Sum_probs=243.7
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
..+..+++.+|..+|++++|+++||+|||++++.++++..++.+..+++ +|++.+++.|+++|++.+........++.
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~ 197 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSGPLTVGFGLVA 197 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccchhHHhHhhhe
Confidence 4567899999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-CcCcHHHHHHH
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISKYELEYI 162 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (389)
|++++++|+.+..+ ......+..++++.++++.+ +||+.+++..++.++..+. +++++|+|+.. .+.+.++..+.
T Consensus 198 E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~ 273 (521)
T KOG0255|consen 198 EIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKI 273 (521)
T ss_pred eecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHH
Confidence 99999999999999 77777788888888888877 8999999999998887666 66666887754 22222333322
Q ss_pred HHhcC-------Cc---cccC-----CCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccc
Q 016442 163 LREKQ-------KP---LLMG-----NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDL 227 (389)
Q Consensus 163 ~~~~~-------~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (389)
.++.. .. .... ++....++...+.++++.|++....+...+..+.......-++..... +|.+.
T Consensus 274 l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~-lg~~~ 352 (521)
T KOG0255|consen 274 LKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG-LGGNI 352 (521)
T ss_pred HHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh-cCchH
Confidence 22211 00 0000 011111222446788888866555554444443333333333333222 34332
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc--h-hhHHHHHHHHHhhh
Q 016442 228 RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--P-VMASAWLTLAIGMK 304 (389)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 304 (389)
.......+..........+...|+.||| .....+....+++++....... . +.......++.+..
T Consensus 353 ---~~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (521)
T KOG0255|consen 353 ---YLNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFI 420 (521)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 2223333446666777778999999887 4445555555555444443322 2 23455555555555
Q ss_pred hccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHhccCCcc
Q 016442 305 SFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL-YFLSALFYIIFSTGERV 382 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 382 (389)
.........+..|+.| ..|..+.+..+....++.+++|.+.-....... ...+...+.. .+.+.+...++++.+..
T Consensus 421 ~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 421 GSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP--LLGLILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 5555556888899999 699999999999999999999988766555322 2222223333 33334444666665544
Q ss_pred c
Q 016442 383 N 383 (389)
Q Consensus 383 ~ 383 (389)
+
T Consensus 499 ~ 499 (521)
T KOG0255|consen 499 P 499 (521)
T ss_pred C
Confidence 3
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-33 Score=258.66 Aligned_cols=369 Identities=17% Similarity=0.186 Sum_probs=247.4
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhccc---chHHHHHHHHHhhhhhccchhhhH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT---SLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
+.+++.+...++..+|+++.|.++||+|||+.+..+..+..++.++..++ + |++.+.++|+++|++.|...+...
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 35788999999999999999999999999999999999999999999999 8 999999999999999999999999
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc---CcchhHHHHhhHHHHHHHHHHHhccCCCCCC-CcCc
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA---GIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQIS 155 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (389)
.++.|..|+++|++..++.+.+..+|..++..++..+.+.. +||+.+.+.+++.++..+.. ...||+|+.. .+.+
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGR 203 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceeccccc
Confidence 99999999999999999999999999999998876654433 49999999998887765544 5567887754 2222
Q ss_pred HHHHHHHHHhcCCcc----ccCC----CCCCCCCchhHHHhhcchh----HHHHHHHHHHHHH-HHHHHHHhhhHHHHHH
Q 016442 156 KYELEYILREKQKPL----LMGN----KHKPATVIPPFRRLLSKMP----TWSIIVANAMHSW-GFFVILSWMPIYFNFV 222 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 222 (389)
.+|.++..++.+... +.++ .++.++.+..+++++++++ ............. +......+.|.++++
T Consensus 204 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~- 282 (451)
T PF00083_consen 204 DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN- 282 (451)
T ss_pred ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc-
Confidence 233333322211110 0000 0111111134566776643 2222222222222 333445555656555
Q ss_pred hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-----hccc----hhhH
Q 016442 223 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-----AAKS----PVMA 293 (389)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~ 293 (389)
.+.+.. -.......+...++.+.+..+.||+|||+.. ..+.....++..... ..+. ....
T Consensus 283 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 283 AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLL---------IIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred cccccc--ccccccccccccccccccccccccccccccc---------cccccccccccccccccccccccccccccccc
Confidence 566655 2223344556667777888999999999432 223333222222221 1121 1222
Q ss_pred HHHHHH-HHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 016442 294 SAWLTL-AIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 294 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 371 (389)
+....+ ...+.....+..+.+..|.+| +.|+++.|+....+++++.++|.+...+.+..+.........+++.+..++
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred ceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 222222 223333444566688899999 899999999999999999999999999998876333333344444444445
Q ss_pred HHHHhccCCcccccc
Q 016442 372 FYIIFSTGERVNFDE 386 (389)
Q Consensus 372 ~~~~~~~~~~~~~~~ 386 (389)
.+.+.+++++++.+|
T Consensus 432 ~~~~lpET~g~~l~e 446 (451)
T PF00083_consen 432 VYFFLPETKGKTLEE 446 (451)
T ss_pred eeEEEeeCCCCCHHH
Confidence 556677877776654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=188.58 Aligned_cols=359 Identities=16% Similarity=0.105 Sum_probs=245.6
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
|..++......+..+++..+|..+|++|||+..........+...+.+.+ +|+..+.+.|.+.|+|.|+ .|...++-
T Consensus 114 q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~y 190 (528)
T KOG0253|consen 114 QAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS--PNFASLCVFRALWGFGVGG-LPVDSAIY 190 (528)
T ss_pred hhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC--CCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence 56788889999999999999999999999999999999999999999999 9999999999999999999 99999999
Q ss_pred hcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-CcCcHHHHHH
Q 016442 83 ARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISKYELEY 161 (389)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 161 (389)
.|..|..+|..-+-.. ..+.+|.+....+.-....++||||.....+.+..+.+.+ .++.+|+|+-. .+.+++++-.
T Consensus 191 le~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f-~~w~~ESpRf~~~~G~~~kAle 268 (528)
T KOG0253|consen 191 LEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARF-LVWVYESPRFYLAKGDDYKALE 268 (528)
T ss_pred HHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH-HhhcccCcchhhhcCChHHHHH
Confidence 9999999999877776 9999999999999999999999999998888666555444 44556766532 2333332221
Q ss_pred HHHh----cCCc------------cccCCC--------CCCCCCchhHHHhhcc---hhHHHHHHHHHHHHHHHHHHHHh
Q 016442 162 ILRE----KQKP------------LLMGNK--------HKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVILSW 214 (389)
Q Consensus 162 ~~~~----~~~~------------~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 214 (389)
..++ .... ..++++ ...++...+..+++.. ++...+....+...+.+++....
T Consensus 269 tL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLl 348 (528)
T KOG0253|consen 269 TLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLL 348 (528)
T ss_pred HHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111 1100 000000 0112222233344321 23334444555555566655444
Q ss_pred hhHHHHHHh--c-----------------cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhh
Q 016442 215 MPIYFNFVY--H-----------------IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI 275 (389)
Q Consensus 215 ~~~~~~~~~--g-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
.....+... + .+..+--.=.....+....|.++.+++.||+||| ..+...++
T Consensus 349 ttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK---------kTMal~l~ 419 (528)
T KOG0253|consen 349 TTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK---------KTMALSLI 419 (528)
T ss_pred HHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch---------hHHHHHHH
Confidence 444433210 0 0111111112334566778899999999999999 44456666
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh
Q 016442 276 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS 354 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 354 (389)
..+++.+.+...........+.+..-.+........+.|..|++| ..|+++.|.......+|+++.|.+. ...+. .
T Consensus 420 ~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~-s- 496 (528)
T KOG0253|consen 420 LFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL-S- 496 (528)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc-c-
Confidence 666666666555555555555555666666677788999999999 7999999999999999999999998 33333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 355 FQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
...+..+.+.+++++.+...+++.
T Consensus 497 ~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 497 TSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred eeehHHHHHHHHHHHHHHheeeee
Confidence 334444445555555555555543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-27 Score=201.90 Aligned_cols=368 Identities=15% Similarity=0.192 Sum_probs=255.2
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhccc-----chHHHHHHHHHhhhhhccchhhhH
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADT-----SLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
+.+..+..+|.++|+++.|++.||+|||+++...+.++.++++++++...+ -.+++...|++.|+|.|+-+|.+.
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSA 166 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSA 166 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchH
Confidence 567788899999999999999999999999999999999999987776321 256789999999999999999999
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-------------cc--CcchhHHHHhhHHHHHHHHHHHhc
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------------QA--GIFGPFVIFGLSGFLWVLVWLSAT 144 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-------------~~--~w~~~f~~~~~~~~~~~~~~~~~~ 144 (389)
++.+|...+++||...+...+..+.|...|.+++-.+.. +. =||..+.+.++++++....-+. .
T Consensus 167 tI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~-M 245 (538)
T KOG0252|consen 167 TIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLK-M 245 (538)
T ss_pred HHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Confidence 999999999999999999999999998888887765532 11 2999988888877765443333 3
Q ss_pred cCCCCCCCcCcHHHHHHHHHhcCCcccc-----C----CCCCCCCCchhHHHhhcc---hhHHHHHHHHHHHHHHHHHHH
Q 016442 145 SSTPDRHPQISKYELEYILREKQKPLLM-----G----NKHKPATVIPPFRRLLSK---MPTWSIIVANAMHSWGFFVIL 212 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 212 (389)
||+++-.... .++.+...++..+.... + ..+.+++....+.+.+.. +++...+...|+...+++...
T Consensus 246 ~Et~~Y~al~-~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~n 324 (538)
T KOG0252|consen 246 PETARYTALV-SKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQN 324 (538)
T ss_pred CcchhHHHHh-hcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 4544322000 01111111111110000 0 000111111112222222 456666777888888888888
Q ss_pred HhhhHHHHHHhccccchhhh--------hhhHHHH-HHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHH
Q 016442 213 SWMPIYFNFVYHIDLRQASW--------FSAVPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG 283 (389)
Q Consensus 213 ~~~~~~~~~~~g~~~~~~~~--------~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (389)
.+....+++ .|+.+.+..+ ...+... +.+.|..+...++|++||+ .....++.++.+..+.
T Consensus 325 L~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i~~~~ 394 (538)
T KOG0252|consen 325 LFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTIFFFV 394 (538)
T ss_pred cHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHHHHHH
Confidence 888888876 4665554433 1112222 2233556677899999999 6667777777777666
Q ss_pred Hhhccc----hhhHHHHHHHHHhhhhccc-cccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh-----hh
Q 016442 284 LTAAKS----PVMASAWLTLAIGMKSFSH-SGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE-----LV 352 (389)
Q Consensus 284 ~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~ 352 (389)
+....+ .....++..+..++..+.+ .....+.+|.+| +.|++..|+....+..|++++...+.++.+ ..
T Consensus 395 ~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~ 474 (538)
T KOG0252|consen 395 IAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNI 474 (538)
T ss_pred HcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccc
Confidence 654433 1222233333344444444 345678889999 899999999999999999999999999999 66
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Q 016442 353 GSFQGFLLLTSLLYFLSALFYIIFSTGERVNFD 385 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (389)
| ....+++.+.+.+++.+..++++++++++.+
T Consensus 475 g-~~~v~~i~~~~~~~gi~~T~l~pEtk~~~le 506 (538)
T KOG0252|consen 475 G-VRNVFIILAGCMLLGILFTLLIPETKGKSLE 506 (538)
T ss_pred c-chHHHHHHHHHHHHhHheeEEeecccccCHH
Confidence 5 8899999999999999998888877766544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=197.95 Aligned_cols=336 Identities=15% Similarity=0.143 Sum_probs=228.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.+..|+.+.+.++.++..++.|+++|.||||++++.+.++..+|.++++.+ +|...++++..+.|+|.|... .....
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~GvgaG~~~-~~~~~ 154 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLYGVGAGVQE-LAALA 154 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHHHHhhHHHH-HHHHH
Confidence 456799999999999999999999999999999999999999999999999 999999999999999977654 45667
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC---CcCcHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH---PQISKYE 158 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 158 (389)
++|..|.|.|....++.....-.....++.++..+..+.+|||.|++.++...+.++..+++..+++++. ++.++.+
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~ 234 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKRE 234 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHH
Confidence 9999999999988887777766666678888877777779999999998887776554444333222211 1111111
Q ss_pred HHHHHH-------------------hcCC--c--------------------cccCCCC-CCCCCchhHHHhhcch-hHH
Q 016442 159 LEYILR-------------------EKQK--P--------------------LLMGNKH-KPATVIPPFRRLLSKM-PTW 195 (389)
Q Consensus 159 ~~~~~~-------------------~~~~--~--------------------~~~~~~~-~~~~~~~~~~~~~~~~-~~~ 195 (389)
.-...+ .... . +...|.. ..+++..|. +++|++ .+.
T Consensus 235 ~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~-~Lf~~~r~~~ 313 (599)
T PF06609_consen 235 QLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPH-RLFKDRRGFA 313 (599)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCH-HHhccchHHH
Confidence 110000 0000 0 0001111 112333343 677874 565
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 016442 196 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLR---QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI 272 (389)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 272 (389)
..++..++....++....+.|+.....++-++. +.++.....+.+..++.++.+.+..|++|-| +.+.+
T Consensus 314 ~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K--------w~li~ 385 (599)
T PF06609_consen 314 ALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK--------WQLIF 385 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh--------HHHHH
Confidence 556777777777888888999988877766653 5677778888888899999999998887552 22222
Q ss_pred HhhHHHH--HHHHHhhccc-hhhHHHHHHHHHhhhhccccccchhhhc-ccccchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 273 GFIAPGI--ALIGLTAAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQE-IAPQYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 273 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
+...+.. ........++ .......++.+.+.+....+. ....+. .++++-|++.|+...+..+|+.+|..+...+
T Consensus 386 ~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred HHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3222222 2222222222 222333333344444333333 333333 4448999999999999999999999988766
Q ss_pred Hh
Q 016442 349 VE 350 (389)
Q Consensus 349 ~~ 350 (389)
..
T Consensus 465 ~~ 466 (599)
T PF06609_consen 465 FT 466 (599)
T ss_pred HH
Confidence 53
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=194.32 Aligned_cols=359 Identities=11% Similarity=0.062 Sum_probs=243.2
Q ss_pred Cc-CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AG-ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~-~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+| .|.+.+++..+++++.++.|+++||+|.|+++..+.+.+++..++.+++ +++..+.+.|++.|++.|... +...
T Consensus 61 ~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L~i~R~llGvaEA~~~-A~~s 137 (511)
T TIGR00806 61 ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHMQLMEVFYSVTMAARI-AYSS 137 (511)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 46 8999999999999999999999999999999999999999999999999 999999999999999999988 9999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhh--HHHHHHHHHHHhccCCCCCC---CcCc
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL--SGFLWVLVWLSATSSTPDRH---PQIS 155 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~ 155 (389)
++..|+|++||+++.++...+..+|.+++++++++ ...+|||+.+.+.-+ ......+++.++.|.+++.. ++.+
T Consensus 138 yI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~ 216 (511)
T TIGR00806 138 YIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLED 216 (511)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccc
Confidence 99999999999999999999999999999999999 456799986655322 22333444444445443321 1100
Q ss_pred HHHHHH-HHHhcCCccc-cCCCCCC-------CCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccc
Q 016442 156 KYELEY-ILREKQKPLL-MGNKHKP-------ATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID 226 (389)
Q Consensus 156 ~~~~~~-~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 226 (389)
.++... ..+...+... ...+..+ +....++++..+||.+....+=..+...+++.+.+|....-++.-+-.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~ 296 (511)
T TIGR00806 217 VRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESL 296 (511)
T ss_pred cccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCc
Confidence 000000 0000000000 0000000 012234566678888888777777788888888888777766642312
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhc
Q 016442 227 LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 306 (389)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
+...|..-++..+.+.+..+..|++-.++.+. ....+.+...+.+..++.....++.|......++......+
T Consensus 297 ~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~f 369 (511)
T TIGR00806 297 NKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQF 369 (511)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHH
Confidence 23566666777777888888888885554332 23555666666666677777778877777776666666555
Q ss_pred cccccch-hhhcccccchhHHHHHHHHHhhhhhhHHhHHH----HH---HHhhhhhHHHHHHHHHHHHHHHHH
Q 016442 307 SHSGFLV-NLQEIAPQYSGVLHGISNTAGTFAAILGTVGA----GF---FVELVGSFQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~----g~---l~~~~g~~~~~~~~~~~~~~~~~~ 371 (389)
..+.... +..++..+.-|-..|+.+.+.-+-..+-..+. |. +.+++--|...|.+.++..++...
T Consensus 370 litia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~ 442 (511)
T TIGR00806 370 LVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG 442 (511)
T ss_pred HHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence 5554443 34444446678899998887766665555443 22 112222355566666655555444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-23 Score=189.43 Aligned_cols=357 Identities=17% Similarity=0.128 Sum_probs=258.1
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhH-HHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMA-WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
++..++..+..++..|+.|.++|+-|+||.++ ....+..+.+..+.+...++++...+.-++.-++.+......++++.
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP 152 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP 152 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45677888888999999999999998776554 44455555666666653355555566666666888888899999999
Q ss_pred cccCcCch--------------------------hhHHHHHHhhhhhhhhhhhhhhhHhhcc--------cCcchhHHHH
Q 016442 84 RWFPQTER--------------------------ARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIF 129 (389)
Q Consensus 84 ~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~~w~~~f~~~ 129 (389)
|..+++++ ++..+.-.....+|.++...+.-.+... .+-|..+.+.
T Consensus 153 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~ 232 (477)
T PF11700_consen 153 DLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV 232 (477)
T ss_pred hhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence 99999888 8999999999999988888877655322 2358888888
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCc-CcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHH
Q 016442 130 GLSGFLWVLVWLSATSSTPDRHPQ-ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF 208 (389)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (389)
++.-++..+..++..|+.|+.++. ....-... .-++..+.+|++.|.|.....+++.+++.-+.
T Consensus 233 a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~---------------g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~ 297 (477)
T PF11700_consen 233 ALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF---------------GFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGV 297 (477)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH---------------HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 888888888888887777653221 11110000 01122346677788899999999999999999
Q ss_pred HHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh---
Q 016442 209 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--- 285 (389)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 285 (389)
..+......|.++++|++..+...+.....+.+++|.++.+++.||+|.|.. +.+.........+.+....
T Consensus 298 ~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~------~~l~~~l~~~~~i~~~g~~G~~ 371 (477)
T PF11700_consen 298 NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK------RTLLISLILWIIIPLYGLFGFW 371 (477)
T ss_pred HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998821 1111111111122222111
Q ss_pred ----hccchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHH
Q 016442 286 ----AAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL 359 (389)
Q Consensus 286 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 359 (389)
...+.+..... .+.+.+.+ ...+..-++..++.| ++.+...|++...+...+.+||.+.|.+.|.+|+.+..+
T Consensus 372 ~~~~g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~ 450 (477)
T PF11700_consen 372 PSFFGLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGF 450 (477)
T ss_pred hcccCcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 12333333333 33444444 334444455555555 788999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHhccCCccc
Q 016442 360 LLTSLLYFLSALFYIIFSTGERVN 383 (389)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (389)
....++.+++.+++...+.+|.++
T Consensus 451 ~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 451 LFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHHHHHhhccchhhhh
Confidence 988888888888876665554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-24 Score=184.33 Aligned_cols=278 Identities=12% Similarity=0.058 Sum_probs=198.1
Q ss_pred cchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc---------------
Q 016442 55 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------------- 119 (389)
Q Consensus 55 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------------- 119 (389)
++++.+++.-++.|.|.+...+..+.++++..|+|++++.+++.+..+++|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 78999999999999999999999999999999999999999999999999999999999987731
Q ss_pred -cCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHH
Q 016442 120 -AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSII 198 (389)
Q Consensus 120 -~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (389)
.+|+++|++.+.+.++..+.+.+.+. |+.+++++++ .. ++++ .+.++.+|+|+++...
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~--p~~~~~~~~~----------------~~-~~~~--~~~~~~~~~~~~~l~~ 146 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPL--PELQEADVAR----------------VS-SGDT--TQKTSAFQFTHLVLGA 146 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC--CCCCcccccc----------------cc-cccc--cchhhHHhhHHHHHHH
Confidence 36999999777766655554444321 1111100000 00 0000 1122467788888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH--hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhH
Q 016442 199 VANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 276 (389)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
+..+++.....+...|.+.|+++. +|+++.+.+...+....+.++++++.+++.||+++++ . ...+..+
T Consensus 147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~--------~-l~~~~~l 217 (310)
T TIGR01272 147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR--------Y-LAFNAFL 217 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--------H-HHHHHHH
Confidence 888888888999999999999864 6899999999999999999999999999999999872 2 2222222
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHH
Q 016442 277 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ 356 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 356 (389)
...........+.........+++.+.+ ...|.......+..|++.+++.++. ..+.+|+.+.|++.|.+.|..| .+
T Consensus 218 ~~~~~~l~~~~~~~~~~~~~~l~g~~~s-~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~ 294 (310)
T TIGR01272 218 AVLLSIGAALTHGYVAMWFVLALGLFNS-IMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQ 294 (310)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-ch
Confidence 2222222222233322333333443333 4444545555555566667777775 6788999999999999999987 77
Q ss_pred HHHHHHHHH
Q 016442 357 GFLLLTSLL 365 (389)
Q Consensus 357 ~~~~~~~~~ 365 (389)
..+++...+
T Consensus 295 ~a~~v~~~~ 303 (310)
T TIGR01272 295 LAFALPVPC 303 (310)
T ss_pred HHHHHHHHH
Confidence 776644333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=187.15 Aligned_cols=345 Identities=14% Similarity=0.144 Sum_probs=240.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcC-CeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+|+|.+.+...+...++++++|.++||.+ +|+.+.+..++.++........ ++++.++..-++..+......|...+
T Consensus 37 ~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--~~f~~~~~~~~l~~~~~~p~~pl~ds 114 (400)
T PF03825_consen 37 TQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--SSFWWLFVIMLLFSFFFSPTMPLSDS 114 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHccHHHHHHH
Confidence 58899999999999999999999999986 5778877777777776666677 89999988888888888888899999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhh-hhHhhcccCc---chhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVL-SPILMSQAGI---FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISK 156 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l-~~~l~~~~~w---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
+.-+... ++++-.|....+.++|.+++... ++.+....++ .+.+++.+...++.....+.+ |+.|.+++.
T Consensus 115 i~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~l-p~~~~~~~~--- 188 (400)
T PF03825_consen 115 IALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFL-PKTPPKRSA--- 188 (400)
T ss_pred HHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhC-CCCcccccc---
Confidence 9988874 45566777778888888777544 2333333332 345566555554444334443 444321110
Q ss_pred HHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhH
Q 016442 157 YELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAV 236 (389)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (389)
+++.++....+..+++|+|++....+..++...+...+.++.+.|+++.-|.+....+...+.
T Consensus 189 -----------------~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l 251 (400)
T PF03825_consen 189 -----------------KESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWAL 251 (400)
T ss_pred -----------------CCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence 111112222344579999999999999999999999999999999999533777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc-cchhhHHHHHHH----HHhhhhcccccc
Q 016442 237 PWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-KSPVMASAWLTL----AIGMKSFSHSGF 311 (389)
Q Consensus 237 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~ 311 (389)
..+..++.-...+++.+|++.+ .++.++.....+=....... ++.+......++ -+...+......
T Consensus 252 ~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~ 322 (400)
T PF03825_consen 252 GVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAAS 322 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8888888889999999999888 55556666655555444444 333332222222 222233444555
Q ss_pred chhhhcccc-cchhHHHHHHHHHh-hhhhhHHhHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHhccCC
Q 016442 312 LVNLQEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVELVGS-----FQGFLLLTSLLYFLSALFYIIFSTGE 380 (389)
Q Consensus 312 ~~~~~~~~~-~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (389)
..++++..| +.|++++++++... .+|..+|..+.|+++|+.|. +...+.+.+++.++..+.+.++.|++
T Consensus 323 ~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 323 VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 667777666 89999999998865 59999999999999999872 23445555555555555555554433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=187.35 Aligned_cols=370 Identities=13% Similarity=0.028 Sum_probs=251.0
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcc----cchHHHHHHHHHhhhhhccchhhh
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD----TSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
|++++.+.. .....++++.|++.||+|||+++.++.+++.++.++++++.+ ++++.+.+.|++.|+|.+...+..
T Consensus 63 ~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~ 141 (591)
T PTZ00207 63 DLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGA 141 (591)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666553 344567778999999999999999999999999999888621 589999999999999999999999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-----Cc
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-----PQ 153 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 153 (389)
...+.+|+| ++||++.|+.....++|..+.+.+...+.. .+|+..|++.+++.++..++...+.+++|... ++
T Consensus 142 ~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~ 219 (591)
T PTZ00207 142 VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKH 219 (591)
T ss_pred HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccC
Confidence 999999996 789999999999999999864444444433 46889999999888887777776665554221 11
Q ss_pred CcHHHHHHHH--H------hcCCc----------------------------------------------cc--------
Q 016442 154 ISKYELEYIL--R------EKQKP----------------------------------------------LL-------- 171 (389)
Q Consensus 154 ~~~~~~~~~~--~------~~~~~----------------------------------------------~~-------- 171 (389)
.+++|+...+ + +.+.. .+
T Consensus 220 ~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~ 299 (591)
T PTZ00207 220 LDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT 299 (591)
T ss_pred CCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1122211000 0 00000 00
Q ss_pred ------c-C-----------------CC--------C-CCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 016442 172 ------M-G-----------------NK--------H-KPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 218 (389)
Q Consensus 172 ------~-~-----------------~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (389)
. + ++ + ..++..+++++.+++.++|.++..+++...+.....+.+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI 379 (591)
T PTZ00207 300 FDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFI 379 (591)
T ss_pred hccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHH
Confidence 0 0 00 0 001112377788889999999999999988888888888888
Q ss_pred HHHHhccccch--hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHH
Q 016442 219 FNFVYHIDLRQ--ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAW 296 (389)
Q Consensus 219 ~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (389)
.+..-|.+.++ ...+.++.++.+.+|++..|.+.....+|+...+..+...+.+..+ +.+..+.+....+...+...
T Consensus 380 ~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~ 458 (591)
T PTZ00207 380 YTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLP 458 (591)
T ss_pred HHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHH
Confidence 88732763333 2337888999999999999999955555442222223333344444 33333333332221233444
Q ss_pred HHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHH-hHHHHHHHhhhh----h--------HHHHHHHHH
Q 016442 297 LTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILG-TVGAGFFVELVG----S--------FQGFLLLTS 363 (389)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~-~~~~g~l~~~~g----~--------~~~~~~~~~ 363 (389)
.++.+...+...+.....+.|++.++-|+-.-+.....-+|..+- -.+.|.++|+-. + +...|++.+
T Consensus 459 ~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~ 538 (591)
T PTZ00207 459 YFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLL 538 (591)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHH
Confidence 444445555667777888899988989998888888877887776 568899998643 1 556788888
Q ss_pred HHHHHHHHHHHHh
Q 016442 364 LLYFLSALFYIIF 376 (389)
Q Consensus 364 ~~~~~~~~~~~~~ 376 (389)
++++.+.++...+
T Consensus 539 ~~~~~g~~~s~~l 551 (591)
T PTZ00207 539 GLSFLAFITSTYV 551 (591)
T ss_pred HHHHHHHHHHhhe
Confidence 8777777765443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=177.52 Aligned_cols=351 Identities=16% Similarity=0.131 Sum_probs=232.2
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHH--HHH-HHhhhhc--ccchH-HHHHHHHHhhhhhccch
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS--LAT-FLTPWAA--DTSLL-ALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~--~~~-~~~~~~~--~~~~~-~l~~~r~l~G~~~~~~~ 75 (389)
+|+|.+.++..+...+.+|+.|.++||.|.||-++....+.. .+. +...+.+ ..|.+ ..+++-+..|+......
T Consensus 43 ~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~ 122 (412)
T PF01306_consen 43 TEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGV 122 (412)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 578999999999999999999999999997776554443322 122 2222220 12332 33444455566666667
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
|...+++.++. ++.+.-.|..-++.++|.+++..++|.+.+. +-+..|++....+++..++....+|+.+++.+..+
T Consensus 123 ~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~ 199 (412)
T PF01306_consen 123 PLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD 199 (412)
T ss_dssp HHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST
T ss_pred hHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc
Confidence 77777777765 4566778888999999999999999999863 55677887776666665555555544443322111
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh---ccccchhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY---HIDLRQASW 232 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~ 232 (389)
.+ ++++++...++..+++|+|++|.+.+........+..+...+|.|....+ +.+....|+
T Consensus 200 ~~----------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~ 263 (412)
T PF01306_consen 200 AL----------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGY 263 (412)
T ss_dssp TS----------------SS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cc----------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhH
Confidence 00 11112222345678999999999888777777777777777888877533 334566788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
+.+...+..++.-.+.+++.+|+|.| ..+.++..++.+=.......++++.+...-.+-..-.........
T Consensus 264 l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 264 LWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999 444555556666666666667776665554444444444444555
Q ss_pred hhhhcccc-cchhHHHHHH-HHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-hccCCc
Q 016442 313 VNLQEIAP-QYSGVLHGIS-NTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYII-FSTGER 381 (389)
Q Consensus 313 ~~~~~~~~-~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 381 (389)
-+.++..| |..++...+. +...+++..+.+.+.|.++|+.| ++..|++.+.+.+...++..+ ++++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 66666666 7788888885 67788999999999999999998 887777777666555544444 444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=187.01 Aligned_cols=321 Identities=15% Similarity=0.083 Sum_probs=207.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhh----cCCe-ehhHHHHHHHHHHHHHhhhhcc----cchHHHHHHHHHhhhhhc
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAAD----TSLLALLAMRAVVGLAEG 72 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~ 72 (389)
+++|.+.++..+..++..|+.|+++|| +||| +.++.+....+++..+....+. .....+++..++.+.+..
T Consensus 45 ~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t 124 (444)
T PRK09669 45 AIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYT 124 (444)
T ss_pred HHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999998 7775 5566777777777765544410 124556666777777777
Q ss_pred cchhhhHHHHhccc-CcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-------ccCcchhHHHHhhHHHHHHHHHHHhc
Q 016442 73 VALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFGLSGFLWVLVWLSAT 144 (389)
Q Consensus 73 ~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-------~~~w~~~f~~~~~~~~~~~~~~~~~~ 144 (389)
....+-.++.+|+. +++||++..++......+|..+++.+...+.. ..+|+..+.+.+++.++..+..++..
T Consensus 125 ~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~ 204 (444)
T PRK09669 125 AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMT 204 (444)
T ss_pred hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence 77777889999998 45889999999888888888887765544332 24688888888877776655555544
Q ss_pred cCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Q 016442 145 SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH 224 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 224 (389)
+|++++++ +++.+.++++++++|||.++.+....++............+.|.+...+
T Consensus 205 ~e~~~~~~-----------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~ 261 (444)
T PRK09669 205 KERYTPEV-----------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL 261 (444)
T ss_pred EEecCCCC-----------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC
Confidence 44322110 0112234577889999999888877776666665555544444444333
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhh
Q 016442 225 IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMK 304 (389)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (389)
+++..+.+.....+..+++.++.+++.||+++|+ .....................++.+......++.....
T Consensus 262 -~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~ 333 (444)
T PRK09669 262 -RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-------AFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQ 333 (444)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-------HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 2333444455556777788889999999999882 22222111111111111222233333333333333333
Q ss_pred hccccccchhhhcccc--------cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 305 SFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
+...+..++...|..+ +..|...|..+....+|..+++.+.|.+.|..|
T Consensus 334 ~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 334 NLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555666666543 235778899999999999999999999998765
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=180.93 Aligned_cols=351 Identities=17% Similarity=0.102 Sum_probs=225.3
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhh----hcCCeehhHHH-HHHHHHHHHHhhhhcccchH-----------------HH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVD----YYGGKIIMAWG-VALWSLATFLTPWAADTSLL-----------------AL 60 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~l 60 (389)
+.+++..+..+...+.+|+.|+++| |+||||.++.+ .....++..+++++ ++.+ .+
T Consensus 40 ~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--~~~~~~~~~~~~~~~~~~~i~~~ 117 (477)
T TIGR01301 40 WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--ADIGHLFGDNLDKKTKPRAIIVF 117 (477)
T ss_pred HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--chhhhhccccccccchhHHHHHH
Confidence 4567778888999999999999999 59999988775 66666666777776 5542 22
Q ss_pred HHHHHHhhhhhccchhhhHHHHhcccCcCch--hhHHHHHHhhhhhhhhhhhhhhhHh--hccc-------------Ccc
Q 016442 61 LAMRAVVGLAEGVALPAMNNMVARWFPQTER--ARAVAIAMGGFTSGNAIGLVLSPIL--MSQA-------------GIF 123 (389)
Q Consensus 61 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~l~~~l--~~~~-------------~w~ 123 (389)
+++-.+..++.....++..++++|.+|+++| +.++++.+...++|.++|+.+++.. .+.+ +.|
T Consensus 118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (477)
T TIGR01301 118 VVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLK 197 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHH
Confidence 3333344457777888899999999998865 5799999999999999999999875 2211 468
Q ss_pred hhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcc-----hhHHHHH
Q 016442 124 GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSK-----MPTWSII 198 (389)
Q Consensus 124 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 198 (389)
..|++.++..++..+...+..+|.|...+++.+++. . ++.++.+....+++++++ |.++.++
T Consensus 198 ~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~ 264 (477)
T TIGR01301 198 SCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE------A-------APPSKHGEEAFFGELFGAFKYLPRPVWILL 264 (477)
T ss_pred HHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh------c-------ccccccchhhhHHHHHHHHHHCCHHHHHHH
Confidence 899998888888777777777776532221110000 0 000111111223333332 5788999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH-Hhccccch------h---h-hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHH
Q 016442 199 VANAMHSWGFFVILSWMPIYFNF-VYHIDLRQ------A---S-WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRK 267 (389)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~------~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 267 (389)
+..++..++.+.+..|.+.|..+ .++-++.+ . | +......+...+.+++..++.+|+|+||
T Consensus 265 ~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k-------- 336 (477)
T TIGR01301 265 LVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK-------- 336 (477)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 99999999999999999998874 45433221 1 2 2334445555566677788888887531
Q ss_pred HHHHHHhhHHHHHHHHHhhc----c---c---------------hhhHHHHHHHHHhhhhccccccchhhhcccc--cch
Q 016442 268 ILQSIGFIAPGIALIGLTAA----K---S---------------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--QYS 323 (389)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~----~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 323 (389)
.....+.+..+.++...... + . .........++.........+.....++.++ +..
T Consensus 337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~ 416 (477)
T TIGR01301 337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ 416 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence 23233333333322222110 0 0 1222223334444444433333334444443 466
Q ss_pred hHHHHHHHHHhhhhhhHHhHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHh
Q 016442 324 GVLHGISNTAGTFAAILGTVGAGFFVELVG-SFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 324 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
|..+|+.|.+..+.+.+.....|.+.+..| +....+.+.++.++++.+.....
T Consensus 417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~ 470 (477)
T TIGR01301 417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALIL 470 (477)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999777766 34567777777777776655443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=184.26 Aligned_cols=359 Identities=14% Similarity=0.094 Sum_probs=201.9
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhh-cCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
.+++.+.+........+++|+++|| +|||+++..+..+.+++..++.++. ++.+.+++.|+++|++.|...+...+++
T Consensus 59 a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~l~gig~g~~~~~~~~l~ 137 (500)
T PRK09584 59 SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-HDAGIVYMGMATIAVGNGLFKANPSSLL 137 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhhhcccCCHHHHH
Confidence 3455555555555566789999999 5999999999999999998888861 3466677889999999999999999999
Q ss_pred hcccCcCc--hhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHH---HHhccCCCCCCC--cCc
Q 016442 83 ARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVW---LSATSSTPDRHP--QIS 155 (389)
Q Consensus 83 ~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~ 155 (389)
.|++|+++ |..++++++.+.++|..+||.+++++.++.|||+.|++.++..++..+.. ....++.+++.+ +.+
T Consensus 138 ~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PRK09584 138 STCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPIN 217 (500)
T ss_pred HHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccc
Confidence 99998654 45688999999999999999999999999999999999776444433222 222233211111 111
Q ss_pred HHHHHH----------HHHh-cCCccccCC----------CCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 016442 156 KYELEY----------ILRE-KQKPLLMGN----------KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSW 214 (389)
Q Consensus 156 ~~~~~~----------~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (389)
..+... .... ......... ...... ....++.-| ++.+.. +..++....++.....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~~~~~i~f~~~~~q 294 (500)
T PRK09584 218 YRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKE-AFAMKGAAR-RKMIVA-FILMLEAIIFFVLYSQ 294 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HhhcCHHHH-HHHHHH-HHHHHHHHHHHHHHHH
Confidence 110000 0000 000000000 000000 000001111 222222 2222333444455555
Q ss_pred hhHHHHH--Hhcccc------chhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh
Q 016442 215 MPIYFNF--VYHIDL------RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 286 (389)
Q Consensus 215 ~~~~~~~--~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
.|.++.. ..+.+. ...+++.+...+..++..++..++-+|.++|... . ....++++..++++.....
T Consensus 295 ~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~---~--~~~~~G~~l~~l~f~~l~~ 369 (500)
T PRK09584 295 MPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPM---P--HKFAIGMVLCSGAFLVLPL 369 (500)
T ss_pred hccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCc---H--HHHHHHHHHHHHHHHHHHH
Confidence 5555443 111221 1245566666667777777777776776655221 1 2234444444444433222
Q ss_pred ccc---------hhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh------
Q 016442 287 AKS---------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE------ 350 (389)
Q Consensus 287 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------ 350 (389)
... .++.+...++......+..|....+..+..| +.||+.+|.......+|..++..+.+....
T Consensus 370 ~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~ 449 (500)
T PRK09584 370 GAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTD 449 (500)
T ss_pred HHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 111 2233333333333344455555566666666 899999998766666666555555542211
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHH
Q 016442 351 ---LVGSFQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 351 ---~~g~~~~~~~~~~~~~~~~~~ 371 (389)
..+.+...|...++..++..+
T Consensus 450 ~~~~~~~~~~~f~~~~~~~~~~a~ 473 (500)
T PRK09584 450 PLMSLEVYGRVFLQIGIATAVIAV 473 (500)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHH
Confidence 112266777766666544433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=179.23 Aligned_cols=320 Identities=18% Similarity=0.182 Sum_probs=233.2
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhh----hcCCee-hhHHHHHHHHHHHHHhhhh-c-cc----chHHHHHHHHHhhhhh
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVD----YYGGKI-IMAWGVALWSLATFLTPWA-A-DT----SLLALLAMRAVVGLAE 71 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~d----r~Grr~-~~~~~~~~~~~~~~~~~~~-~-~~----~~~~l~~~r~l~G~~~ 71 (389)
.+|.+..+..+..++..|+.|.++| |+|||| .++.+....+++..++... + .. ....+.+..++..++.
T Consensus 38 ~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~ 117 (428)
T PF13347_consen 38 LAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAY 117 (428)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhh
Confidence 3466777777888899999999999 899765 5667888888887776654 1 01 2334577777779999
Q ss_pred ccchhhhHHHHhcccC-cCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc-------CcchhHHHHhhHHHHHHHHHHHh
Q 016442 72 GVALPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 72 ~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-------~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
.....+..++.+|..+ ++||.+..+.-+.+..+|..+...+.+.+.+.. +|++...+.+++.++..+...+.
T Consensus 118 t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~ 197 (428)
T PF13347_consen 118 TFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFF 197 (428)
T ss_pred hhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhhe
Confidence 9999999999999997 578999999999999999877777766655322 58999999888888887777777
Q ss_pred ccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 016442 144 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY 223 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (389)
.+|++++.+ +++++.+.++.++++++||+++.+.+..++...+........+.|.++..
T Consensus 198 ~ke~~~~~~---------------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl 256 (428)
T PF13347_consen 198 VKERSVEVT---------------------EQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL 256 (428)
T ss_pred eeecccccc---------------------ccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Confidence 776221111 23344455667889999999999999999998888888888888988887
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHH--HHhhccchhhHHHHHHHHH
Q 016442 224 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALI--GLTAAKSPVMASAWLTLAI 301 (389)
Q Consensus 224 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 301 (389)
|.+ ...+.+.....+...++.++.++++||+|+|+. . ..+......... .+...++.+.......+..
T Consensus 257 ~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 326 (428)
T PF13347_consen 257 GNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-------Y--IIGLLLAALGFLLLFFLGPGSPWLVLILFILAG 326 (428)
T ss_pred cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee-------h--hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 765 566777778889999999999999999999943 2 222222222222 2222134444444433333
Q ss_pred hhhhccccccchhhhcccc--------cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 302 GMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
...+.......+...|+.+ +..|...|+.+....++..+++.+.+.+.+..|
T Consensus 327 i~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 327 IGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 3334444555666665544 346999999999999999999999999987765
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-23 Score=167.28 Aligned_cols=351 Identities=16% Similarity=0.217 Sum_probs=231.7
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhh-cCCeehhHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+..++-+.|+....+-+.++|++.|| +|-|..-++-+....++-++++.-. .+.+|.+..+|++.|+|.-....+-++
T Consensus 80 kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~ 159 (459)
T KOG4686|consen 80 KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNK 159 (459)
T ss_pred eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcc
Confidence 56677888999999999999999996 6888766666666666666654321 288999999999999998888888999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCc------chh---HHHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI------FGP---FVIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w------~~~---f~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+...|+..||.+.++|+.....-+|..+--.+.+++.+..+= +.. ...................--
T Consensus 160 yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~----- 234 (459)
T KOG4686|consen 160 YAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL----- 234 (459)
T ss_pred eeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 999999999999999999999999998888777777765330 111 111111111111111110000
Q ss_pred CcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhh
Q 016442 152 PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS 231 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (389)
.++.+++..+..+. ...+.++..+.++ -.|.+|.+....+++....+-+...-|.++++.+|+|+..++
T Consensus 235 ---~D~rAerilh~e~g------~~Ge~pkLtdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~ 303 (459)
T KOG4686|consen 235 ---SDDRAERILHLEEG------FLGEEPKLTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAG 303 (459)
T ss_pred ---hhhHHHHHHhhhcC------cccCCcccccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhcc
Confidence 00011111111100 0011111111111 157899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH--HHHHhhccchhhHHHHHHHHHhhhhcccc
Q 016442 232 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHS 309 (389)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (389)
.+.+.....+.+..++.|.++||.|++ ..++.. +.+..... .+.+.. -+++. ...+++.... ....
T Consensus 304 ~i~s~vy~Isav~spvfg~i~Dk~G~n-------~~wv~~-a~~~tl~~H~~l~Ft~-lsPy~--~m~~lGLsys-llAc 371 (459)
T KOG4686|consen 304 NILSTVYGISAVLSPVFGAISDKYGFN-------LWWVAS-ACILTLLGHSGLFFTF-LSPYT--SMTFLGLSYS-LLAC 371 (459)
T ss_pred chhhhhhhhhhhhhhhHHHhHhhhcce-------ehhHHH-HHHHHHHHhhhHHhhh-ccHHH--HHHHHhhhHH-HHHH
Confidence 999999999999999999999999998 122222 22211111 122222 12222 2222222222 2222
Q ss_pred ccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHhccCCc
Q 016442 310 GFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF---QGFLLLTSLLYFLSALFYIIFSTGER 381 (389)
Q Consensus 310 ~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (389)
..+..++.+.| ++-|++.|++..+.++|-++.|.+.|.+.|.-|+| +..|+..+.+.+....+.+.+.++++
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~kq~ 447 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKKQS 447 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheecccc
Confidence 34556666667 68999999999999999999999999999987754 44555666666666655555544443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=165.16 Aligned_cols=351 Identities=14% Similarity=0.076 Sum_probs=254.4
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeeh-hHHHHHHHHHHHHHhhhhcc-cchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKII-MAWGVALWSLATFLTPWAAD-TSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.|...++..+-.++-+|+.|.++|+.|+||. +-....+..++..+..+..+ ++++..++...+..++.......-.++
T Consensus 60 ~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~ 139 (438)
T COG2270 60 WGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSM 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhH
Confidence 3556778888888999999999999997665 55555555566666666632 235556777888889999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHh---h---------------cccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL---M---------------SQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l---~---------------~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
+.+..++++-++..+.-.....+|..+.-...-.. . +..+-|..+.+.++-.++..+..++.
T Consensus 140 L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~ 219 (438)
T COG2270 140 LPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILN 219 (438)
T ss_pred hhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhc
Confidence 99999998888887777777777776665543111 1 22346778888888888877777777
Q ss_pred ccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 016442 144 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY 223 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (389)
.++.++...+..+.-. ..-++.+.++|+..+++++...+++.+++.-+.+++......|..+.+
T Consensus 220 v~~~~~~~~~~~~~l~----------------~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~ 283 (438)
T COG2270 220 VHDAEKISSPPPTALR----------------NGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADL 283 (438)
T ss_pred ccccccccccchHHHH----------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 7766543211111000 011223457788888999999999999999999999999999999889
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhH-HHHHHHHHhhccchhhHHHHHHHHHh
Q 016442 224 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA-PGIALIGLTAAKSPVMASAWLTLAIG 302 (389)
Q Consensus 224 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
|++..+...+....++..++++++.|++.||++.|+.. ..+++. ...++..+.........+...+++..
T Consensus 284 gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl---------~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s 354 (438)
T COG2270 284 GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL---------MIGLVILSIAALYLIFLEGELDFWILGLLVGTS 354 (438)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee---------hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998322 222222 22223333332333333444555555
Q ss_pred hhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 303 MKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
.+.........+...++|++.++..|+++..++..+..||...+.+.+.+|+.+..+....++..++.+.+...+.+
T Consensus 355 ~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 355 LGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred cchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 55554444444444555589999999999999999999999999999999988888888888887777766655544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=178.82 Aligned_cols=325 Identities=10% Similarity=-0.011 Sum_probs=208.6
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhh----hcCC-eehhHHHHHHHHHHHHHhhhhcc--c--chHHHHHHHHHhhhhhcc
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVD----YYGG-KIIMAWGVALWSLATFLTPWAAD--T--SLLALLAMRAVVGLAEGV 73 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~~--~--~~~~l~~~r~l~G~~~~~ 73 (389)
++|.+..+..+.-++..|+.|.++| |+|| |+.++.+....+++..++...+. + .+..+++..++.+++...
T Consensus 43 ~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~ 122 (473)
T PRK10429 43 LVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTI 122 (473)
T ss_pred HHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888999999999999 6698 56677788887887666644310 1 133456667777888888
Q ss_pred chhhhHHHHhccc-CcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-------cCcchhHHHHhhHHHHHHHHHHHhcc
Q 016442 74 ALPAMNNMVARWF-PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------AGIFGPFVIFGLSGFLWVLVWLSATS 145 (389)
Q Consensus 74 ~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~ 145 (389)
..++..++..|.. +++||.+..++...+.++|..+.+.+...+.+. .+|+....+.+++.++..+..++..+
T Consensus 123 ~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~ 202 (473)
T PRK10429 123 MDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVH 202 (473)
T ss_pred HcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCce
Confidence 8889999999999 588999999997777777766665554433221 24666666666666655555554444
Q ss_pred CCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcc
Q 016442 146 STPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHI 225 (389)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 225 (389)
|+++..+.. .+++++.+.++.++.+++||.++.+....++..........+.+.|.+...+
T Consensus 203 e~~~~~~~~------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~- 263 (473)
T PRK10429 203 EVYSSDNQV------------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG- 263 (473)
T ss_pred ecCCccccc------------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-
Confidence 432211100 0011222344566677899999888888888877777777777766665433
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH-HHH--hhccchhhHHHHHHHHHh
Q 016442 226 DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL-IGL--TAAKSPVMASAWLTLAIG 302 (389)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 302 (389)
++...+.+.....+..+++.++.+++.||+|+|+ ...........+... ... ...++.+......++...
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~ 336 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-------LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNI 336 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-------HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 5556666667667888899999999999999882 222122111111111 111 112223333322222222
Q ss_pred hhhccccccchhhhcccc--------cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 303 MKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
..+.......++.+|..+ +..|...|..+....++..+++.+.|.+.+..|
T Consensus 337 ~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 337 GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 223333444555565533 345679999999999999999999999998665
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-20 Score=169.50 Aligned_cols=361 Identities=14% Similarity=0.110 Sum_probs=210.6
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhc-CCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+.+.+.+.+.....++++++|+++||+ ||||++.++.++..++.+++.... ++...+.+...+.++|.|...+...++
T Consensus 46 ~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-~~~~~~~l~l~li~iG~G~~~~~~~al 124 (493)
T PRK15462 46 HAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-IHPSFLYLSLAIIVCGYGLFKSNVSCL 124 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHhcccccccHHHH
Confidence 456778888888899999999999999 999999999999999987776541 222334444455556677777888899
Q ss_pred HhcccCcC--chhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCC----CCCcCc
Q 016442 82 VARWFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD----RHPQIS 155 (389)
Q Consensus 82 i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (389)
++|.+|++ +|..++++.....++|..++|.+.+++.+..|||+.|.+.++..++..+......+..++ ++++.+
T Consensus 125 v~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~ 204 (493)
T PRK15462 125 LGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLR 204 (493)
T ss_pred HHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCch
Confidence 99999875 699999999999999999999999999998999999998766444433333322211111 111111
Q ss_pred HHHHHH---------------HHHh-cCCcccc--------------CCCCCCCCCchhHHHhhcch--hHHHHHHHHHH
Q 016442 156 KYELEY---------------ILRE-KQKPLLM--------------GNKHKPATVIPPFRRLLSKM--PTWSIIVANAM 203 (389)
Q Consensus 156 ~~~~~~---------------~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 203 (389)
+++... .... ....... ..-.+++..++ + |+| .+..+.+...+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e--r~r~~~~~~l~~~~~~ 279 (493)
T PRK15462 205 ATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQK---Q--RKELGLIVTLTFFSML 279 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---H--HhhHHHHHHHHHHHHH
Confidence 110000 0000 0000000 00000000000 1 111 12233334444
Q ss_pred HHHHHHHHHHhhhHHHHHHhccc----cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHH
Q 016442 204 HSWGFFVILSWMPIYFNFVYHID----LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI 279 (389)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
+...+....+-+..|.++..+.+ +-...++.+...+..++.+++.+++-.|..+|+.......|......+...+.
T Consensus 280 Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 280 FWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 44455555566666666542221 12356677788888888888888888887654333333333433333333333
Q ss_pred HHHHHhh---c----cchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHh-hhhhhHHhHHHHHHHh
Q 016442 280 ALIGLTA---A----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVE 350 (389)
Q Consensus 280 ~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~ 350 (389)
..+.+.. . .+.++.+...++......+..|...+.+.++.| +.+|+.+|...... .+|..++..+.+...+
T Consensus 360 ~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~ 439 (493)
T PRK15462 360 CILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQ 439 (493)
T ss_pred HHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3332211 1 123333333444444445666777778888888 79999999985533 4555555555554421
Q ss_pred h-----------hhhHHHHHHHHHHHHHHH
Q 016442 351 L-----------VGSFQGFLLLTSLLYFLS 369 (389)
Q Consensus 351 ~-----------~g~~~~~~~~~~~~~~~~ 369 (389)
. ...+...|...+...+++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 440 ASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred ccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 0 113556676666655444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=173.94 Aligned_cols=318 Identities=13% Similarity=0.057 Sum_probs=194.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhc----CCeehh-HHHHHHHHHHHHHhhhhc---ccc--hHHHHHHHHHhhhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYY----GGKIIM-AWGVALWSLATFLTPWAA---DTS--LLALLAMRAVVGLAE 71 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~----Grr~~~-~~~~~~~~~~~~~~~~~~---~~~--~~~l~~~r~l~G~~~ 71 (389)
.++|.+.+...+..++..++.|+++||. ||||.. ..+.....+...+..... .++ ....+....+.+++.
T Consensus 44 ~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (448)
T PRK09848 44 AAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCY 123 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999996 767644 556555554444432110 011 233455567778888
Q ss_pred ccchhhhHHHHhcccCc-CchhhHHHHHHhhhh-----hhhhhhhhhhhHhhccc--CcchhHHHHhhHHHHHHHHHHHh
Q 016442 72 GVALPAMNNMVARWFPQ-TERARAVAIAMGGFT-----SGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 72 ~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~-----~G~~~g~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
+...++..++..|..++ +||.+..++-..+.+ ++..++|.+++...+.. +|.....+.++++.+..+.....
T Consensus 124 ~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 203 (448)
T PRK09848 124 SLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKS 203 (448)
T ss_pred HHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888877754 678887776654433 45555665554332111 12111122233333322223222
Q ss_pred ccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 016442 144 TSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY 223 (389)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (389)
.||+++++ .+++..++.+++++|||+++...+..++...+........|.|+++.+
T Consensus 204 ~~e~~~~~------------------------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (448)
T PRK09848 204 TRENVVRI------------------------VAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVL 259 (448)
T ss_pred cEeccCCC------------------------ccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeec
Confidence 23322111 011233446788999999999888888888888888888888888888
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc--cchhhHHH-HHHHH
Q 016442 224 HIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA--KSPVMASA-WLTLA 300 (389)
Q Consensus 224 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~ 300 (389)
|.++...+.......++.+++.++.+++.||+++| .....+..+..+........ ++.+.... ..+.+
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~---------~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g 330 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK---------NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIAS 330 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 87766555544444566778889999999999987 22233333322222222221 22332222 22233
Q ss_pred Hhhhhccccccchhhhcccc--------cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 301 IGMKSFSHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
.+.. ...+...+...+..| +.+|...|+.+....+|..+++.+.|.+.+..|
T Consensus 331 ~G~~-~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 331 IGQG-VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHH-HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3332 333444555555543 246999999999999999999999999987654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=179.30 Aligned_cols=332 Identities=13% Similarity=0.022 Sum_probs=206.7
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcC-----CeehhHHHHHHHH-HHHHHhhhhcccchHHH-HHHHHHhhhhhccc
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYG-----GKIIMAWGVALWS-LATFLTPWAADTSLLAL-LAMRAVVGLAEGVA 74 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~ 74 (389)
+|++...+...+...+-.+ +|.++||++ ||+.++++.++.+ +.....+.. ++.... .+..++.+++.+..
T Consensus 61 ~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~a~~ 137 (468)
T TIGR00788 61 ARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK--VSSAKVAAAFIFLAALAKALY 137 (468)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888665 999999998 7777888877763 443334433 454444 44889999999999
Q ss_pred hhhhHHHHhcccCcCchhhHHHHH---HhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCC-C
Q 016442 75 LPAMNNMVARWFPQTERARAVAIA---MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPD-R 150 (389)
Q Consensus 75 ~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~-~ 150 (389)
.++..++..|..+ |++....+.. ....++|..+|+.+++.+.+..+||..|++.+...++..+...+. +|++. .
T Consensus 138 dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~ 215 (468)
T TIGR00788 138 DVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFV 215 (468)
T ss_pred HHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccc
Confidence 9999999999998 5554433333 334458999999999999999999999999888887764444444 44321 1
Q ss_pred CCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHhccccch
Q 016442 151 HPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAM-HSWGFFVILSWMPIYFNFVYHIDLRQ 229 (389)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (389)
.++..+++...... ... ......++...+.++.+++|.++...+..++ +.........++ .+.++..|+++.+
T Consensus 216 ~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~ 289 (468)
T TIGR00788 216 RPRIGTYLEMNMAL-LTL----GVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSF 289 (468)
T ss_pred cccccccchhhhhh-hhh----hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcch
Confidence 11100000000000 000 0000001112345566788888876665555 222221111111 1233458999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh-----h-----ccchhhHHHHHHH
Q 016442 230 ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT-----A-----AKSPVMASAWLTL 299 (389)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~ 299 (389)
.|......+++.+++....+++.+|++.| .+...+.+.......... . .++.+.......+
T Consensus 290 ~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 290 SGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 99999998888888888888888777766 333444444333322111 0 0122222222222
Q ss_pred HHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 300 AIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
.....+........++.+..| +++|+..++.+.+.++|..+++.+.|.+.++.|
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222333333444555566655 899999999999999999999999999999876
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-19 Score=162.14 Aligned_cols=318 Identities=12% Similarity=0.057 Sum_probs=199.2
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhh----cCCee-hhHHHHHHHHHHHHHhhhhcccc----hHHHHHHHHHhhhhhccc
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDY----YGGKI-IMAWGVALWSLATFLTPWAADTS----LLALLAMRAVVGLAEGVA 74 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~~~ 74 (389)
+|.+..+.-+--++..|+.|.++|| +|||| .++++....+++..++...+..+ ...+.+..++..++....
T Consensus 47 ~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~ 126 (460)
T PRK11462 47 VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVV 126 (460)
T ss_pred HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3455555566667889999999996 78865 45567677887777665441111 344566677778888888
Q ss_pred hhhhHHHHhcccC-cCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc-------CcchhHHHHhhHHHHHHHHHHHhccC
Q 016442 75 LPAMNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-------GIFGPFVIFGLSGFLWVLVWLSATSS 146 (389)
Q Consensus 75 ~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-------~w~~~f~~~~~~~~~~~~~~~~~~~~ 146 (389)
..+-.++.+|..+ +|||++..++...+..+|..+++.+...+.+.. +|+....+.+++.+++....+...+|
T Consensus 127 ~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 127 NIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred hccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 8888999999997 788999999999999999888877765544332 47777777777666665555554444
Q ss_pred CCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccc
Q 016442 147 TPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHID 226 (389)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 226 (389)
++++++ ++.+.++.++..++||.++.+....++..............|.+...|.
T Consensus 207 ~~~~~~------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~- 261 (460)
T PRK11462 207 RVEAPP------------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT- 261 (460)
T ss_pred ccCCCc------------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-
Confidence 322110 1112345677888999888777666666665555555555555554443
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhc
Q 016442 227 LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 306 (389)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (389)
+...+.+.....+..+++.++++++.||+++| +.................+....+........++.....+.
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 334 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-------TIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQL 334 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 33445566677788889999999999999887 22221111111111111111112221222222222222233
Q ss_pred cccccchhhhcccc--------cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 307 SHSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 307 ~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
..+..+...+|..+ +..|...+..+....+|..+++.+.|.+.+..|
T Consensus 335 ~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 335 VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33334445555443 223555677778899999999999999987654
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=152.98 Aligned_cols=322 Identities=15% Similarity=0.178 Sum_probs=235.3
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcc----cchH--HHHHHHHHhhhhhccchhhhH
Q 016442 6 RFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD----TSLL--ALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 6 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~----~~~~--~l~~~r~l~G~~~~~~~~~~~ 79 (389)
|+.-+|++.+....+++-|+.|++|-|...+++....++|..+-..+.. +.++ ....+..+.+.++-.....-.
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPs 162 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPS 162 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcccc
Confidence 7778899999999999999999999999999999999999998666532 4555 778889999998888777778
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc------Ccch--hHHHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA------GIFG--PFVIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~------~w~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
.+..-|++++||..+..+-.+++.+|..+|.++...+..+- .|.. .|+....+..+..++..+..++.|+.+
T Consensus 163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP 242 (480)
T KOG2563|consen 163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP 242 (480)
T ss_pred HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 88899999999999999999999999999999988887543 3544 355555555555555555555555443
Q ss_pred CcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhh
Q 016442 152 PQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQAS 231 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (389)
+..... ++.+.+..+..++.++|+++..+.+.+.+....+++..+.+..-+.. .|++...+|
T Consensus 243 ps~s~~-----------------~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG 304 (480)
T KOG2563|consen 243 PSASQA-----------------ALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAG 304 (480)
T ss_pred CchhHh-----------------hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccc
Confidence 322111 11123356688899999999998888888777788877777666665 488888999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH---HHHHhh--ccchhhHHHHHHHHHhhhhc
Q 016442 232 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA---LIGLTA--AKSPVMASAWLTLAIGMKSF 306 (389)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~ 306 (389)
+......+++++++.+.|.+.||.++.| ....+........ +..... .........+.+++.+..+.
T Consensus 305 ~ig~l~iv~Gmlga~~~gii~Dktk~fk--------~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 305 YIGALMIVAGMLGALASGIIADKTKKFK--------LTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHH--------HHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence 9999999999999999999999987662 1111111111111 111111 12233333444445555444
Q ss_pred cccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 307 SHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 307 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
.+...-.-.+..+|..-++..|+.+..+++-+.+-..+.+...+..+
T Consensus 377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 44344445566788888999999999999999999999999988766
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-18 Score=150.11 Aligned_cols=319 Identities=16% Similarity=0.122 Sum_probs=233.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh----cCCe-ehhHHHHHHHHHHHHHhhhhcc----cchHHHHHHHHHhhhhhccchhh
Q 016442 7 FPSSFLWGYLVSPIAGGTLVDY----YGGK-IIMAWGVALWSLATFLTPWAAD----TSLLALLAMRAVVGLAEGVALPA 77 (389)
Q Consensus 7 ~~s~~~~~~~~~~~~~G~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~ 77 (389)
+..+--+--++.-|+.|.++|| +||+ +.++++.+..++.+.++..+++ .+..-.++...+.+++......+
T Consensus 53 iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniP 132 (467)
T COG2211 53 IFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIP 132 (467)
T ss_pred HHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCc
Confidence 3333344456788999999995 7765 4577777888888888877731 23455677889999999999999
Q ss_pred hHHHHhcccC-cCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-------ccCcchhHHHHhhHHHHHHHHHHHhccCCCC
Q 016442 78 MNNMVARWFP-QTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPD 149 (389)
Q Consensus 78 ~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
-.++.+|..+ ++||.+..++-+.+.++|..+...+...+.. ..||+....+.++++.+..+.+++..+|++.
T Consensus 133 y~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 133 YGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred hhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999985 6889999999999999997776666555442 3478888888888888888888887777665
Q ss_pred CCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccch
Q 016442 150 RHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ 229 (389)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (389)
+..+. ++..+++.++.+..+++||.+...++...+...+.+...+....|.+..+|.+...
T Consensus 213 ~~~~~-------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~ 273 (467)
T COG2211 213 ETQPT-------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF 273 (467)
T ss_pred ccccC-------------------cccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH
Confidence 32210 11123334445667889999999999888888888888888888888888888777
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHH--HhhccchhhHHHHHHHHHhhhhcc
Q 016442 230 ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG--LTAAKSPVMASAWLTLAIGMKSFS 307 (389)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 307 (389)
............+++.++..++.+|+|+| .+...+.+...+.... +...++....++..++.....+..
T Consensus 274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk---------~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~ 344 (467)
T COG2211 274 AYLLLLASGAGLLIGLILWPRLVKKFGKK---------KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIA 344 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhchH---------HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcc
Confidence 87777777777787899999999999999 2223333333333222 222334444444445555555667
Q ss_pred ccccchhhhcccc--------cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 308 HSGFLVNLQEIAP--------QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 308 ~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
.+..++..+|..+ +..|...|....+..+|.+++..+.|++.+..|
T Consensus 345 ~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 345 NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7777877776653 345889999999999999999999999998766
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-17 Score=141.25 Aligned_cols=333 Identities=16% Similarity=0.141 Sum_probs=224.5
Q ss_pred HHhhhhhhhhhhhcC-----Ceeh-hHHHHHHHHHHHHHhhhhc---cc-------ch--H--HHHHHHHHhhhhhccch
Q 016442 16 LVSPIAGGTLVDYYG-----GKII-MAWGVALWSLATFLTPWAA---DT-------SL--L--ALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 16 ~~~~~~~G~l~dr~G-----rr~~-~~~~~~~~~~~~~~~~~~~---~~-------~~--~--~l~~~r~l~G~~~~~~~ 75 (389)
....+.+|+.+|+.+ ||.. +..|......+..+.+++. .. +. + .....-.+.|+|.+...
T Consensus 28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~ 107 (403)
T PF03209_consen 28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG 107 (403)
T ss_pred HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence 345788899999998 7755 4555555555555544431 12 22 2 24556678899999999
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHH---HhhHHHHHHHHHHHhccCCCCCCC
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI---FGLSGFLWVLVWLSATSSTPDRHP 152 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
++..++++|..|+|+|+++.++.....-+|.+++..+.+.+.+.++-.-..-+ .+++.++..++..+ ..|++..+.
T Consensus 108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~w-g~E~r~~~~ 186 (403)
T PF03209_consen 108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALW-GQEPRRSRR 186 (403)
T ss_pred HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCccc
Confidence 99999999999999999999999999999999999999999887763222222 22222222222222 222222211
Q ss_pred cCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhh
Q 016442 153 QISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASW 232 (389)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 232 (389)
. ..+++++.+..+.++++..+|+........++...+++.=...+-+|--+.+|+++.+...
T Consensus 187 ~------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~ 248 (403)
T PF03209_consen 187 A------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTR 248 (403)
T ss_pred c------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHH
Confidence 1 0123344455677888899999998888888888888888888889999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHcCCchhhHHHHHHHHHhhHHHHHH---HHHhhccchhhHHH-HHHHHHhhhhcc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQSIGFIAPGIAL---IGLTAAKSPVMASA-WLTLAIGMKSFS 307 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~ 307 (389)
+......+..++-...+++..| .+++ .....++.....++ .......+.+.+.. .++++.+.+.+.
T Consensus 249 Lta~~~~G~L~G~~~~g~~l~~~~~~~---------~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~ 319 (403)
T PF03209_consen 249 LTAFWGGGTLLGMLLAGFLLSRRLGKK---------RTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFT 319 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCch---------HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHH
Confidence 9999999999999888888774 2222 11122222222222 22223333444333 444555555555
Q ss_pred ccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh---------hHHHHHHHHHHHHHHHHHHHHHh
Q 016442 308 HSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG---------SFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 308 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.......+.-..+++.|..+|.....+.++..++..+.|.+.|... .|..+|.+=++..++++.+...+
T Consensus 320 vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 320 VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555566899999999999999999999999999998532 26666766666666666554444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-17 Score=144.11 Aligned_cols=365 Identities=14% Similarity=0.126 Sum_probs=221.8
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhc-CCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 6 RFPSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 6 ~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
-+.++|..-.-+...++|+++||+ |+|+++..|.+++.+|-++.+.....+...++++-++.++|.|..-+...++++|
T Consensus 65 ~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ 144 (498)
T COG3104 65 GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGE 144 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHH
Confidence 345566555667888999999996 9999999999999999999888711268889999999999999999999999999
Q ss_pred ccCcC--chhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCC---C--CcCcHH
Q 016442 85 WFPQT--ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR---H--PQISKY 157 (389)
Q Consensus 85 ~~~~~--~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~ 157 (389)
.+|++ +|-..++++.++.++|+.++|.+.+++.++.||+..|...++-..+..+..+..++..... + ...+..
T Consensus 145 ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~ 224 (498)
T COG3104 145 LYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN 224 (498)
T ss_pred hcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence 99865 4778999999999999999999999999999999999998877666655555543221111 0 000111
Q ss_pred HHHH--------HHHh-----cCCc----------------cccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHH
Q 016442 158 ELEY--------ILRE-----KQKP----------------LLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGF 208 (389)
Q Consensus 158 ~~~~--------~~~~-----~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (389)
+... .... ...+ ...+.-..++.. +.-+++ .....+.+...+++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~---~~~~~Lfl~~~iFW~~~ 300 (498)
T COG3104 225 FLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRL---LAAIPLFLFAVIFWALY 300 (498)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHH---HHHHHHHHHHHHHHHHH
Confidence 0000 0000 0000 000000000000 111111 12223333333344444
Q ss_pred HHHHHhhhHHHHHHhccc----cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH
Q 016442 209 FVILSWMPIYFNFVYHID----LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL 284 (389)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (389)
....+.+..|.++..+.+ .....+..+...+.-++..++..++..|.++++.......+.-....+..++...+..
T Consensus 301 ~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~ 380 (498)
T COG3104 301 EQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLL 380 (498)
T ss_pred HhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 444444555554432212 1235566777788888888888999999777754433333444444444444433333
Q ss_pred h---hc-----cchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHH------HH
Q 016442 285 T---AA-----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGF------FV 349 (389)
Q Consensus 285 ~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~------l~ 349 (389)
. .. .+.++.+...++....-.+..+.-...+....| +..+..++........++.++..+.+. ..
T Consensus 381 ~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~ 460 (498)
T COG3104 381 AGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAY 460 (498)
T ss_pred HHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhh
Confidence 2 11 122333333333333334445555555555555 788999998888888888777777763 33
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 350 ELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
+... ....|...++..++.......
T Consensus 461 ~~~~-~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 461 TAFI-EGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred hhhh-hhhhHHHHHHHHHHHHHHHHH
Confidence 3333 566677777666555544333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=147.81 Aligned_cols=319 Identities=17% Similarity=0.120 Sum_probs=225.8
Q ss_pred HHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhh--ccchhhhHHHHhcccCcC
Q 016442 12 LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAE--GVALPAMNNMVARWFPQT 89 (389)
Q Consensus 12 ~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~ 89 (389)
.+...+.++..|.++||+|||..+........+......+. . +|.++ +.|+.. +.......++++|....+
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--G-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--H-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 46677888999999999999999999999999998888876 3 44444 555433 355677889999999999
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCc
Q 016442 90 ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKP 169 (389)
Q Consensus 90 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (389)
+|...+++.+.....+..++|.+++.+.+..|.-.+|.+..+..++..+......||+..++++.+.+. + + ...
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~-~---~-~~~- 218 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL-R---E-LTP- 218 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc-c---c-cCC-
Confidence 999999999999999999999999999999999999999999999888888888888765544322000 0 0 000
Q ss_pred cccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHH
Q 016442 170 LLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF-VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248 (389)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 248 (389)
.........+.....+..-.+|..+.+++..+....... ...-..+.|++..+++++++.+.+.+.......++.++.
T Consensus 219 -~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~ 297 (463)
T KOG2816|consen 219 -GSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLL 297 (463)
T ss_pred -CcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111111112222234455555554444444333 223245778888899999999999998899898888666
Q ss_pred H-HHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccccchhHHH
Q 016442 249 G-LLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLH 327 (389)
Q Consensus 249 g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 327 (389)
. .+...++.+ .++..++..-........+.+..|................+...........++++|++.
T Consensus 298 ~~~l~~~l~~~---------~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~ 368 (463)
T KOG2816|consen 298 LPLLSSILGEK---------RLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVF 368 (463)
T ss_pred HHHHHHHHhhh---------hHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchh
Confidence 5 677777777 466777777777777777777766655554444444333333333344445568999999
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 328 GISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 328 g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
++...+..+...++|.+.+.++..+-
T Consensus 369 ~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 369 GIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999976543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-20 Score=172.43 Aligned_cols=348 Identities=14% Similarity=0.138 Sum_probs=3.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-----------c----------------
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-----------D---------------- 54 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----------~---------------- 54 (389)
+|.|++.+.+-++..+..++..++.+|.+|-|.+-.|.++++++++++++-. .
T Consensus 38 ~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~ 117 (539)
T PF03137_consen 38 SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSS 117 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccccccc
Confidence 6889999999999999999999999999999999999999999999875320 0
Q ss_pred ---------------------cchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhh
Q 016442 55 ---------------------TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLS 113 (389)
Q Consensus 55 ---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 113 (389)
.-+..++++.++.|+|....++...+|+-|..++++-+..+|+......+|.++|..++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg 197 (539)
T PF03137_consen 118 SSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLG 197 (539)
T ss_dssp ----------------------------------SSS-------------------------------------------
T ss_pred ccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHH
Confidence 01345889999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcc---------------------cC-cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHh-cCCcc
Q 016442 114 PILMSQ---------------------AG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILRE-KQKPL 170 (389)
Q Consensus 114 ~~l~~~---------------------~~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 170 (389)
+.+.+. .| |...|++.+...++..+..+.++++-|+..+..++++.++..++ ...+.
T Consensus 198 ~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~ 277 (539)
T PF03137_consen 198 SFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDS 277 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhc
Confidence 877531 12 66677778888888788888877766655222111111111111 00000
Q ss_pred ccCC------CCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHH-HHHH
Q 016442 171 LMGN------KHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAF 243 (389)
Q Consensus 171 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 243 (389)
..++ ....++.....+++++||.+....++.........++.++.|-|++.+++.++.+++.+.....+ +.++
T Consensus 278 ~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~ 357 (539)
T PF03137_consen 278 FKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAAL 357 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhhe
Confidence 0001 12234455677899999999999999999999999999999999999999999999988766555 5667
Q ss_pred HHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHH---HHHH---------H--hh-------c---------------
Q 016442 244 TGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI---ALIG---------L--TA-------A--------------- 287 (389)
Q Consensus 244 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------~--~~-------~--------------- 287 (389)
|.+++|++.+|++.+.... .+......++.... .++. . .. .
T Consensus 358 G~llGG~ivkk~kl~~~~~---~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~ 434 (539)
T PF03137_consen 358 GILLGGYIVKKFKLSARGA---AKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSG 434 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ehheEEEEEEEecCcHHHH---HHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCC
Confidence 8899999999987652211 11111111111111 0100 0 00 0
Q ss_pred -----------c---chhhHHHHHHHHHhhh-hccccccchhhhcccccchhHHHHHHHHHhh-hhhhHHhHHHHHHHhh
Q 016442 288 -----------K---SPVMASAWLTLAIGMK-SFSHSGFLVNLQEIAPQYSGVLHGISNTAGT-FAAILGTVGAGFFVEL 351 (389)
Q Consensus 288 -----------~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~ 351 (389)
+ ....+.+..++..... ....|........+++++|+.+.|+...+.+ +|.+-+|.++|.+.|+
T Consensus 435 ~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 435 NGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 0 0011112222222222 2333444445555566899999999988766 7889999999999997
Q ss_pred h
Q 016442 352 V 352 (389)
Q Consensus 352 ~ 352 (389)
.
T Consensus 515 t 515 (539)
T PF03137_consen 515 T 515 (539)
T ss_dssp -
T ss_pred h
Confidence 3
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=147.92 Aligned_cols=257 Identities=15% Similarity=0.149 Sum_probs=200.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-------------------c--------
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-------------------D-------- 54 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------------------~-------- 54 (389)
++.|++.+.+-++..+...+..+...|..|-+.+-+|+++++++++++++-. .
T Consensus 132 s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~ 211 (735)
T KOG3626|consen 132 SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCC 211 (735)
T ss_pred CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhh
Confidence 5788999999999999999999999999999999999999999999876430 0
Q ss_pred --------------------cc--hH-HHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhh
Q 016442 55 --------------------TS--LL-ALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLV 111 (389)
Q Consensus 55 --------------------~~--~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 111 (389)
.+ ++ .++++.++.|+|....++...+|+-|...+++-+..+|+......+|.++|.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfl 291 (735)
T KOG3626|consen 212 CNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFL 291 (735)
T ss_pred ccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHH
Confidence 00 22 46888999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhccc------------------C-cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcC-Cccc
Q 016442 112 LSPILMSQA------------------G-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQ-KPLL 171 (389)
Q Consensus 112 l~~~l~~~~------------------~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 171 (389)
+++++.+.+ | |..-|++.+.+.++..+..++++++.|+..++.+.++.+...++.. ....
T Consensus 292 lgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~ 371 (735)
T KOG3626|consen 292 LGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSD 371 (735)
T ss_pred HHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCC
Confidence 999886421 1 6677888888888888888888877776554321111111111110 0000
Q ss_pred cCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHH-HHHHHHHHHH
Q 016442 172 MGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSV-MAFTGYLGGL 250 (389)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~ 250 (389)
.....+-++.....+++++||.+....+...+....+.++.+++|-|++.++|.++..+..+....++. ..+|.+++|+
T Consensus 372 ~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~ 451 (735)
T KOG3626|consen 372 KTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGL 451 (735)
T ss_pred cchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccce
Confidence 000011123345678899999999999999999999999999999999999999999999988666654 5566789999
Q ss_pred HHHHHHHc
Q 016442 251 LSDMLIQR 258 (389)
Q Consensus 251 l~d~~~~~ 258 (389)
+.+|+..+
T Consensus 452 iikkfkl~ 459 (735)
T KOG3626|consen 452 IIKKFKLS 459 (735)
T ss_pred eeeeeccc
Confidence 99988755
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=126.29 Aligned_cols=140 Identities=21% Similarity=0.356 Sum_probs=127.1
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
|++.+.+.++..+++++.|++.||+|||+.+..+.....++.+..... ++++.+.+.+++.|++.+...+...+++.|
T Consensus 1 g~~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred CEEEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355667788999999999999999999999999999999999988888 899999999999999999999999999999
Q ss_pred ccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccC
Q 016442 85 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS 146 (389)
Q Consensus 85 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 146 (389)
.+|+++|++.+++.+....+|..+++.+.+.+.+..+|++.+++.+...++..+...+..||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999998999999999888877776666665543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=134.79 Aligned_cols=352 Identities=14% Similarity=0.150 Sum_probs=214.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCC-eehhHHHHHHHHHHHHHh-hhhc-cc-chHHHHHHHHHhhhhhccchhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGG-KIIMAWGVALWSLATFLT-PWAA-DT-SLLALLAMRAVVGLAEGVALPA 77 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~l~~~r~l~G~~~~~~~~~ 77 (389)
+..|++.++..++.+++++..|++..|.+. |+.++.|.++..++.++. +... .+ +-+.++++|++.|+|.+. ...
T Consensus 71 ~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~ 149 (488)
T KOG2325|consen 71 TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAV 149 (488)
T ss_pred chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHH
Confidence 456999999999999999999999999997 888999999999999988 4332 13 678899999999999775 677
Q ss_pred hHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc--cC-----------cchhHHHHhhHHHHHHHHHHHhc
Q 016442 78 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--AG-----------IFGPFVIFGLSGFLWVLVWLSAT 144 (389)
Q Consensus 78 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--~~-----------w~~~f~~~~~~~~~~~~~~~~~~ 144 (389)
..+|+++....++|.++++....+..+|..+||.++..+... -| +-.+-|+.++..++..+......
T Consensus 150 lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f 229 (488)
T KOG2325|consen 150 LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF 229 (488)
T ss_pred HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence 789999999899999999999999999999999988766431 12 23455777777777766666666
Q ss_pred cCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Q 016442 145 SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH 224 (389)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 224 (389)
+|.+++..+.+.++.++ +..++++.+..+.++ +..+...+..+...+.+....+..+.+....++
T Consensus 230 ~E~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~d~------~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~ 294 (488)
T KOG2325|consen 230 KEVYRGIIDKKKRSVEE---------EKSDIEKVKKPKLDW------VAVLVCIFLRFVVNFIATTIETLSSALTMVMYG 294 (488)
T ss_pred eecccCccccccccchh---------hccchhhhccCChhH------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhc
Confidence 66655443221111000 000000111111111 122334445555556666667777777777788
Q ss_pred cccchhhhhhhHHHHH-HHHHH-HHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHH----Hhhccc---------
Q 016442 225 IDLRQASWFSAVPWSV-MAFTG-YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG----LTAAKS--------- 289 (389)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------- 289 (389)
++.+++-...+..... +.+.. +.......|.++.-. |..+ ..+++....+... +.....
T Consensus 295 w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~-----r~~~-~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~ 368 (488)
T KOG2325|consen 295 WTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDK-----RRII-LLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTY 368 (488)
T ss_pred cccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----ceee-eehHHHHHHhhheeeeeccccccccccccccc
Confidence 8777765544332222 22222 222333334333100 0111 1111111111111 100000
Q ss_pred ------------------hhhHHHHHH--HHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 290 ------------------PVMASAWLT--LAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 290 ------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
....+.... ++..+-....+....+...+.|+.+++..|++......+..++|.+...+.
T Consensus 369 ~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~ 448 (488)
T KOG2325|consen 369 AGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIF 448 (488)
T ss_pred cCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhH
Confidence 000011111 111111111123334455566799999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 350 ELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
...| +.+.+.+..+..++...++...
T Consensus 449 ~~~g-~~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 449 TLSG-PRPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred HhcC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 9988 7777776666665555554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-14 Score=128.16 Aligned_cols=171 Identities=11% Similarity=0.123 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 271 (389)
|+++.+.+..++...+......++|.|+++++|+++.+.++..+...+...+.++..|+++||+++|+ ...
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~---------~~~ 77 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR---------YML 77 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch---------hHH
Confidence 44667778888888899999999999999889999999999999999999999999999999999982 223
Q ss_pred HHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 272 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
.+.....+........++.+..+....+.........+....+..|..| ++|+++.|+.+...++|..++|.+.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443344444444433333222222223334445566666655 789999999999999999999999999886
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 016442 351 LVGSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~ 373 (389)
.| ++..|...+++.+++.+..
T Consensus 158 -~g-~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 158 -QS-INLPFWLAAICSAFPLVFI 178 (395)
T ss_pred -hc-cCcHHHHHHHHHHHHHHHH
Confidence 45 7888888777776665443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=133.17 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=125.2
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHHhhhhhccchhhhHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD--TSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+...... .+++.+++.+++.|++.+...+....
T Consensus 252 ~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 252 NASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888899999999999999999999999999999888776665310 13466788899999999988899999
Q ss_pred HHhcccCcCchhhHHHHHH-hhhhhhhhhhhhhhhHhhcc------cCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 81 MVARWFPQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQ------AGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
++.|++|+++|++++|+.+ ...++|..+||.++|.+.++ +||+..|.+.+++.++..++..++.+|+.
T Consensus 332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999997 67889999999999999887 46999999999888888887777776653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-13 Score=115.59 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=160.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.|++.+........++..++.|.++||+|||+.-+..+++++++++..- . ++++.++++|++-|++.+....+-.++
T Consensus 69 ~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~--~~~~~L~~GRvlgGiaTSLLfS~FEsW 145 (354)
T PF05631_consen 69 HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-S--SNYPVLLLGRVLGGIATSLLFSAFESW 145 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888899999999999999999999999999999997543 4 799999999999999999988888876
Q ss_pred Hh-ccc----CcCchhhHHHHHH-hhhhhhhhhhhhhhhHhhcccCc--chhHHHHhhHHHHHHHHHHHhccCCCCCCCc
Q 016442 82 VA-RWF----PQTERARAVAIAM-GGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQ 153 (389)
Q Consensus 82 i~-~~~----~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~w--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (389)
.. |.- |++..+..++... ..+++-.+.+..++..+.+..+. ..+|........+..++.....+|+..+..+
T Consensus 146 ~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~ 225 (354)
T PF05631_consen 146 MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSS 225 (354)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccc
Confidence 54 432 3333444454444 33445556666677777776654 7788887777777666666555555433211
Q ss_pred CcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHhccccchhhh
Q 016442 154 ISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVIL-SWMPIYFNFVYHIDLRQASW 232 (389)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~ 232 (389)
. ++..+...+.++.+.+||+++.+.+...+...+.+.+. .|.|..-.+ + ...--|.
T Consensus 226 ~--------------------~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~--~-~~~P~Gl 282 (354)
T PF05631_consen 226 S--------------------SSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD--D-EELPLGL 282 (354)
T ss_pred c--------------------cchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC--C-CCCCchH
Confidence 0 00111223456678889999999999888888877765 556655422 1 2334788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDM 254 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~ 254 (389)
+++.+..+.++|+.+..++..|
T Consensus 283 IFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 283 IFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 8888888899888877665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=124.32 Aligned_cols=348 Identities=16% Similarity=0.119 Sum_probs=200.0
Q ss_pred hhhhhhhhhhhcC-----CeehhHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHHhhhhhccchhhhHHHHhcccC--c
Q 016442 18 SPIAGGTLVDYYG-----GKIIMAWGVALWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP--Q 88 (389)
Q Consensus 18 ~~~~~G~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~ 88 (389)
..++.|.++|.+- ||+-++++.++..++...++... ..+.....+.-++..+|.+.....+.+++.|... +
T Consensus 40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p 119 (433)
T PF03092_consen 40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREP 119 (433)
T ss_pred HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Confidence 3466799999763 55567777777766555555432 1456667777788889999999999999999984 3
Q ss_pred CchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCC
Q 016442 89 TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQK 168 (389)
Q Consensus 89 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (389)
++|+...+.......+|.+++..++|.+.+..++|..|.+.+++..+..+...+..+|.++..+....... ++ ..
T Consensus 120 ~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~----~~-~~ 194 (433)
T PF03092_consen 120 ESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFG----KE-EV 194 (433)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhccc----cc-cc
Confidence 44788888888999999999999999999999999999999888888777777776663222211000000 00 00
Q ss_pred ccccCCCCCCCCCchhHHHhhcchhHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHhc---cccchhhhhhhHHHHHHHHH
Q 016442 169 PLLMGNKHKPATVIPPFRRLLSKMPTWSIIV-ANAMHSWGFFVILSWMPIYFNFVYH---IDLRQASWFSAVPWSVMAFT 244 (389)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~ 244 (389)
. ......++.....++.+++|.++...+ ..++............-.+..+..+ +|+...+.+..+..++.++
T Consensus 195 ~---~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~- 270 (433)
T PF03092_consen 195 P---CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLL- 270 (433)
T ss_pred c---hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHH-
Confidence 0 000001122334556777777776655 2222222111110100011223344 6666666655444444444
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh---------ccchhhHHHHHHHHHhhhhccccccchhh
Q 016442 245 GYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA---------AKSPVMASAWLTLAIGMKSFSHSGFLVNL 315 (389)
Q Consensus 245 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
+..+-+|+.++... |+.......+.....+.-... .++.+..+.-..+.-........+.....
T Consensus 271 ---g~~~y~~~~~~~~~----R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~ 343 (433)
T PF03092_consen 271 ---GILLYRKYFSNWSW----RRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLA 343 (433)
T ss_pred ---HHHHHHHHHhCCCH----HHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHH
Confidence 44444444443221 122222222221111110000 01112222222333333333333334455
Q ss_pred hcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 016442 316 QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-------SFQGFLLLTSLLYFLSALFYIIFSTGER 381 (389)
Q Consensus 316 ~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (389)
.+..| ...|+..++...+.++|..++..+...+.+..+ +.....+++.++.++.+.+..+++++++
T Consensus 344 a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 344 ARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 56655 799999999999999999999999999988765 2455556666666666665556655444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=128.57 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=126.0
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++..+..+. +|.+.+++.+++.|++.+...+.....+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 328 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALTGFGFSLVFPALGVEAV 328 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566677888899999999999999999999999998888888888887 88888889999999999988888888889
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
|..|+++|++++++++....+|..+++.+.+.+.++.||++.|++.+...++..+......++++
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 329 KRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999988888877766666655444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-13 Score=122.97 Aligned_cols=175 Identities=10% Similarity=0.046 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--hccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHHcCCchhhHHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFV--YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKIL 269 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~ 269 (389)
.++.+....++..+++++...++|.|+++. +|+++.+++.+.+...+...++.+++|+++|| +||| ..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~---------~~ 81 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK---------KT 81 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH---------HH
Confidence 455666777777899999999999999987 89999999999999999999999999999999 7998 34
Q ss_pred HHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-c---chhHHHHHHHHHhhhhhhHHhHHH
Q 016442 270 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q---YSGVLHGISNTAGTFAAILGTVGA 345 (389)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~~g~~~~~~~~ 345 (389)
+..+....++........++.........+.....+...+.......+..| + .|+++.++.+...++|..++|.+.
T Consensus 82 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~ 161 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA 161 (475)
T ss_pred HHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence 444444555554444444443333333222222233445555666666665 3 388899999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 346 GFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 346 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
+++.++.| ++..|...++..+++.+.+...+
T Consensus 162 g~l~~~~g-~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 162 GVIAENYG-YHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999887 89998887776666655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=122.78 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
++...+..++.+..........|.+.++ +|+++.+.+++.+...++..+++++.|++.||+|+| .....+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~~~~~ 94 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR---------YFMGIG 94 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc---------hhHHHH
Confidence 3344555555555556777888888877 899999999999999999999999999999999998 333445
Q ss_pred hhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
.+..++........++.+......++.....+...+....+..+..| ++|++++|+.+....+|..++|.+.+.+.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55555555555444444444333333233333444555667777777 78999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 016442 353 GSFQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~ 371 (389)
| ++..|.+.++..++..+
T Consensus 175 g-w~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 175 G-WRYGMMIAGIIAIVVGL 192 (434)
T ss_pred c-HHHHHHHHHHHHHHHHH
Confidence 7 88888887766554433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=119.51 Aligned_cols=167 Identities=14% Similarity=0.184 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh
Q 016442 195 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF 274 (389)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 274 (389)
+......++...+.+....++|.|++++.|+|+.+.|+..+...+...+.+++.|+++||+++| .....+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k---------~~l~~~~ 83 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK---------PMIVTGM 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch---------HHHHHHH
Confidence 3455777788888888899999999888999999999999999999999999999999999988 3334444
Q ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 275 IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
.............++.+.......+.....+...+...+...+..| |+|+++.|+.+...++|..+||.+.|.+. ..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g 162 (400)
T PRK11646 84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD 162 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 4444444444444554444333333332333444555566666655 89999999999999999999999999999 455
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 016442 354 SFQGFLLLTSLLYFLSALF 372 (389)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~ 372 (389)
++..|++.++..++..+.
T Consensus 163 -~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 163 -FRLVCATGAVLFVLAAAF 180 (400)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 888888777666555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=123.47 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=129.1
Q ss_pred hhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCch
Q 016442 183 PPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSV 262 (389)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 262 (389)
.+++.+.|+|.++......++...+........|.+.++ .+.++.+.|+..+...++..+++++.|+++||++||+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~ 86 (417)
T PRK10489 8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL 86 (417)
T ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE
Confidence 455566678888888888888888888888888988877 5779999999999999999999999999999999985432
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHH
Q 016442 263 TLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILG 341 (389)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~ 341 (389)
... .+...+.... ....+...++.+......++.....+...+.......+..| ++|+++.++.+...++|..+|
T Consensus 87 ~~~--~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 162 (417)
T PRK10489 87 LAR--GTCGLGFIGL--ALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS 162 (417)
T ss_pred ehH--HHHHHHHHHH--HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence 110 0001111110 01111122333333333222222233333444555666555 789999999999999999999
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 342 TVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 342 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
|.+.|.+.+..| ++..+.+.++..+++.+.....++
T Consensus 163 ~~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 198 (417)
T PRK10489 163 PALGGLLIAAGG-VAWNYGLAAAGTFITLLPLLRLPA 198 (417)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999876 778887777766666555554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-14 Score=128.56 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=125.1
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
+.|++.++..++..++.+++|++.||+|||+.+..+..+.+++..+.+++ +|.+.+++.+++.|++.+...+....++
T Consensus 263 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 340 (420)
T PRK09528 263 VFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLLVGVFKYI 340 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999999998888888 8999999999999999888888888999
Q ss_pred hcccCcCchhhHHHH-HHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 83 ARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 83 ~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
.|.+|++.|+...+. ++....+|..+++.+.|++.+..||+..|...+++.++..++..+..++++
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999888887655 677788999999999999999999999999988888776666665554443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=119.17 Aligned_cols=173 Identities=15% Similarity=0.200 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHcCCchhhHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVTLTRKILQ 270 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 270 (389)
+.++..+.......+++++...++|.|+++.+|+++.+++.+.+.......++.+++|+++||+ ||| ...
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr---------r~i 79 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR---------MAV 79 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH---------HHH
Confidence 4566667777777889999999999999998999999999999999999999999999999999 988 223
Q ss_pred HHHhhHHHHHHHHHhhcc-c-hhhHHHHHHHHHhhhhccccccchhhhcccc-c--chhHHHHHHHHHhhhhhhHHhHHH
Q 016442 271 SIGFIAPGIALIGLTAAK-S-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q--YSGVLHGISNTAGTFAAILGTVGA 345 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~~g~~~~~~~~ 345 (389)
..+.+...+....+...+ . ........+...+ .+...+...++..|.+| + .|.++.++.....++|+.++|.+.
T Consensus 80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG-~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCG-YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 333333333333332211 1 2222222222222 23334555667788776 3 699999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 346 GFFVELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 346 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
|++.+..| ++..|...++..+++.+.+..
T Consensus 159 g~L~~~~G-w~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 159 GYAQEEYS-WAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHhhhC-hHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 899998877766666665544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=131.86 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=119.3
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcc
Q 016442 6 RFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW 85 (389)
Q Consensus 6 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 85 (389)
+...+..++..++.++.|+++||+|||++++.+.++.+++.++.++. ++...+++.+++.|++.+..++...++++|+
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556678889999999999999999999999999999999998888 8888888899999988888899999999999
Q ss_pred cCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCC
Q 016442 86 FPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST 147 (389)
Q Consensus 86 ~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 147 (389)
+|.++|++++|+.+....+|.++||.+++.+.+. +...+|++.++..++.+++..++ ||.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET 736 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PDT 736 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999999999988764 45677887777777766655554 543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=117.12 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI 272 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 272 (389)
.+....+.+..+++.--.+..-.|...++ .++|.+|.|.+.+...+...++.++.|.++||.+.| ..+..
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr---------~fm~~ 99 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR---------YFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc---------eeehH
Confidence 34445555555555656666666766666 689999999999999999999999999999999998 66678
Q ss_pred HhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHH--HHHH
Q 016442 273 GFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGA--GFFV 349 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~ 349 (389)
+++..++..+.+...++......+..+...+-+...|.....+..-+| ++||+..++-|+..++|+.+.|++. +++.
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 888888888888887777776666666666666666666666666555 8999999999999999999999999 9999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 016442 350 ELVGSFQGFLLLTSLLYFLSALFYIIFSTGERV 382 (389)
Q Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (389)
++.+ ++..|++.+++.++..+..+...|++++
T Consensus 180 ~~~~-w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 180 FHGG-WRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred hccc-hhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 8875 9999999998887777666665554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=118.02 Aligned_cols=169 Identities=12% Similarity=0.104 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhH
Q 016442 197 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
+....++...+.......+|.|..+ .+.++.+.+++.+...++..++.++.|+++||+||| .....+...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~~~~~~~~ 73 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK---------KVMIGADLI 73 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh---------HHHHHHHHH
Confidence 4566677777777788888988887 688999999999999999999999999999999998 222222222
Q ss_pred HHHHHHHHhhcc-----chhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 277 PGIALIGLTAAK-----SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 277 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
...........+ +.+......++.....+...+....+..|..| ++|+++.|..+....+|..++|.+.+.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 74 RAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211111 34444444444334444555666777778777 799999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 351 LVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..| +...++..++..+++.+.....
T Consensus 154 ~~g-~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 154 TLG-IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHhc
Confidence 887 8888887776666555544433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-13 Score=123.09 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=123.3
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+. ++.+.+++.+++.|++.+...+...+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 328 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAALTGAGCSLIFPALGVEVV 328 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455667778888999999999999999999999999999988888777 88888888999999999988888889999
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
|.+|+|+|++++++.+....+|..++|.+.+.+.++.||+..|.+.+...++..+..++.
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 329 KRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998887776666554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=125.54 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=114.1
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHH-hhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFL-TPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
++..+...++..++.+..|+++||+|||+.+..+..+..++... ......++...+++.|++.|++.+........++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 368 (490)
T PRK10642 289 VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLP 368 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888899999999999999999988887654443332 22111156777888999999887777777888999
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc-CcchhHHHHhhHHHHHHHHHHHhccCCCCCCC------cCcH
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP------QISK 156 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 156 (389)
|.+|++.|+.+++.......++..++|.+.+++.+.. +|+.+++...+++++..+..++. ||+|++.. +.++
T Consensus 369 ~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-pes~~~~~~~~~~~~~~~ 447 (490)
T PRK10642 369 AMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM-KETANRPLKGATPAASDI 447 (490)
T ss_pred HHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh-ccccCCCCCCccccccch
Confidence 9999999999999754445566678898888887754 47877777676666665555554 66665432 2444
Q ss_pred HHHHHHHHhc
Q 016442 157 YELEYILREK 166 (389)
Q Consensus 157 ~~~~~~~~~~ 166 (389)
+|.++..++.
T Consensus 448 ~~a~~~l~~~ 457 (490)
T PRK10642 448 QEAKEILVEH 457 (490)
T ss_pred hhHHHHhhcc
Confidence 5555544444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=124.63 Aligned_cols=140 Identities=17% Similarity=0.148 Sum_probs=123.1
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
+.+.+.+.++..++.+..|++.||+|||+.+..+..+..++.+...+. ++.+.+++.+++.|++.+...+...+++.+
T Consensus 261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 344556667788888999999999999999999998888888777777 888889999999999999999999999999
Q ss_pred ccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccC
Q 016442 85 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSS 146 (389)
Q Consensus 85 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 146 (389)
..|+++|++.++..+....+|..+||.+++.+.+..||++.|++.+++.++..+..++..++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888877666655433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-12 Score=118.19 Aligned_cols=177 Identities=8% Similarity=0.060 Sum_probs=122.5
Q ss_pred Hhhcchh-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHHcCCchhh
Q 016442 187 RLLSKMP-TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTL 264 (389)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~ 264 (389)
+.+++|+ ++..+...++..++++....+++.|+++++|++..+++..............+++|+++|| +|||
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r------ 88 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK------ 88 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------
Confidence 4556764 7788888888889999999999999998899999988887776665555556789999999 5998
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhc-cchhhHHHHHHHHHhhhhccccccchhhhcccc-c--chhHHHHHHHHHhhhhhhH
Q 016442 265 TRKILQSIGFIAPGIALIGLTAA-KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q--YSGVLHGISNTAGTFAAIL 340 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~~g~~~ 340 (389)
.....+.....+........ +..........+.....+...+....+..+.+| + .++.+.++.+...++|..+
T Consensus 89 ---~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~ 165 (500)
T PRK09584 89 ---RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF 165 (500)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence 33333334444333333332 222222222222222233344555566777765 2 3456788889999999999
Q ss_pred HhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 016442 341 GTVGAGFFVELVGSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 341 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 373 (389)
+|.+.|++.|..| |+..|...++..+++.+.+
T Consensus 166 gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 166 SMLATPWLAAKYG-WSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 9999988776666655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=118.73 Aligned_cols=174 Identities=11% Similarity=0.039 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 271 (389)
++++...+..++.......+..+.|.+.++ +|.++.+.++..+...++..++.++.|+++||+||| ....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~ 79 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR---------NIFF 79 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH---------HHHH
Confidence 456777788888888888888999999887 899999999998888899999999999999999998 2222
Q ss_pred HHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 272 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
.+....+.........++.+.....-.+.+...+...+.......+..| ++|+++.|+.+...++|..++|.+.|.+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 80 TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 3333333333333333444433333333333333334455666666666 789999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 351 LVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+.| ++..|.+...+..++.+.....
T Consensus 160 ~~g-w~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 160 YAS-WHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred hcc-HHHHHHHHHHHHHHHHHHHHHh
Confidence 887 8888888776665555544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=116.04 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHH
Q 016442 200 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI 279 (389)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
................|.+.++ +|.++.+.++..+...++..++.++.|++.||+||| .....+......
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~~~~~~~~~ 82 (385)
T TIGR00710 13 LSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR---------PVLLLGLFIFAL 82 (385)
T ss_pred HHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHHHHHH
Confidence 3333444555555666766555 899999999999999999999999999999999988 333334444444
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHH
Q 016442 280 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF 358 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 358 (389)
........++.+......++.....+...+....+..|..| ++|+++.|+.+....++..++|.+.+.+.+..+ ++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~ 161 (385)
T TIGR00710 83 SSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAI 161 (385)
T ss_pred HHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHH
Confidence 44444444444444443333333333444555666777766 789999999999999999999999999999877 8888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016442 359 LLLTSLLYFLSALFYII 375 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~~ 375 (389)
+...++..++..+....
T Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 162 FAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777766665554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-11 Score=105.88 Aligned_cols=317 Identities=13% Similarity=0.081 Sum_probs=208.7
Q ss_pred HHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchh
Q 016442 13 WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERA 92 (389)
Q Consensus 13 ~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 92 (389)
-.+....++...+.|..+.|++++++.+...+...+..+. ++...+-+..+.-|++.+. ..+-.+++-...|+++..
T Consensus 52 YSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq 128 (412)
T PF01770_consen 52 YSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ 128 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH
Confidence 3466777888999999999999999999999999999999 9999999999999999876 778889999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhHhhccc--CcchhHHHHhhHHHHHHHHHHHhccCCCCCC---CcCcH-HH-----HHH
Q 016442 93 RAVAIAMGGFTSGNAIGLVLSPILMSQA--GIFGPFVIFGLSGFLWVLVWLSATSSTPDRH---PQISK-YE-----LEY 161 (389)
Q Consensus 93 ~~~~~~~~~~~~G~~~g~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~-----~~~ 161 (389)
++.+...++.-+|..++..++..+.... +.+...++......+..+..+++ |.+++.. ++... .+ .+.
T Consensus 129 ~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL-P~~~~S~~f~r~~~~~~~~~~~~~~~ 207 (412)
T PF01770_consen 129 KVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL-PMPKRSLFFHRKPPAEQDANESESDK 207 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc-CCCCcccceeccCccccccccccccc
Confidence 9999999999999999999998887633 34555555444444444444444 4433211 11100 00 000
Q ss_pred HHHhcCCccccCCCCC--CC-------CCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--hccccchh
Q 016442 162 ILREKQKPLLMGNKHK--PA-------TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFV--YHIDLRQA 230 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~ 230 (389)
..+..+.....+++++ +. ....++++..+||+++...+-..+...++....++....-++. -+-+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYN 287 (412)
T PF01770_consen 208 MNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYN 287 (412)
T ss_pred cccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 0000000000000000 00 0123456677889888888888888888888888887777764 12233446
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccc
Q 016442 231 SWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSG 310 (389)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
|.+-+...+.+.++.+..|++..++.+. ....+.......+.+++.....++.+......++......+..+.
T Consensus 288 G~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTi 360 (412)
T PF01770_consen 288 GAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITI 360 (412)
T ss_pred hHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788888888888885555544 234445555556666666677777776666666555555444433
Q ss_pred c-chhhhcccccchhHHHHHHHHHhhhhhhH
Q 016442 311 F-LVNLQEIAPQYSGVLHGISNTAGTFAAIL 340 (389)
Q Consensus 311 ~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 340 (389)
. .-+...+..|.-|-..|+.+....+-..+
T Consensus 361 A~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 361 ASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 3 33444555567777888776665544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=116.36 Aligned_cols=165 Identities=19% Similarity=0.250 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
.+..++............|.++.+++|.++.+.+++.+...++..++.++.|++.||+||| .....+....
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~ 72 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR---------RVLIIGLLLF 72 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH---------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe---------eeEeehhhhh
Confidence 3455666677777778888666666899999999999999999999999999999999999 3334444444
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHH
Q 016442 278 GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQ 356 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 356 (389)
.+........++.+......++.....+...+....+..+..| |+|+++.++.+....+|..++|.+.+.+.+..+ ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~ 151 (352)
T PF07690_consen 73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WR 151 (352)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HC
T ss_pred hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cc
Confidence 4442222222333344444444444435556667777777777 699999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHHHHHHH
Q 016442 357 GFLLLTSLLYFLSALF 372 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~~ 372 (389)
..|++.++..++..++
T Consensus 152 ~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 152 WAFLISAILSLIAAIL 167 (352)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhh
Confidence 8888888887777664
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-12 Score=115.44 Aligned_cols=171 Identities=14% Similarity=0.009 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
++.+.+..+......+......|.+.++ +|.++.+.++..+...++..++.+..|++.||+||| .+...+
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~ 80 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQS-FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR---------KLLIGL 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH---------HHHHHH
Confidence 3333444443333333344456766555 899999999999999999999999999999999999 333444
Q ss_pred hhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
.....+........++.+.....-+......+...+....+..+..| |+|+++.|+......++..++|++.+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~ 160 (390)
T PRK03545 81 FVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL 160 (390)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 44444444444444555444443332222223334455566667665 79999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 016442 353 GSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
| ++..|...+++.++..+....
T Consensus 161 g-w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 161 G-WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHH
Confidence 7 888988888776665544333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=111.12 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
++...+..++............|.+.++ +|+|+.+.+...+...++..++.++.|++.||+||| .....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r---------~~~~~~ 78 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEY-FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK---------RQLIFG 78 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHH
Confidence 4444555555555566677778887665 899999999999999999999999999999999999 233334
Q ss_pred hhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
.....+........++.+.......+.....+...+.......+..| ++|+.+.+..+....+++.++|.+.+.+.+..
T Consensus 79 ~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 158 (394)
T PRK03699 79 FALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS 158 (394)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444443333444444444333333333333444455556666666 68999999998888999999999999887643
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 016442 353 GSFQGFLLLTSLLYFLSALFYI 374 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~ 374 (389)
.+++..|...++..++..+..+
T Consensus 159 ~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 159 IEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3488888877776655544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=111.61 Aligned_cols=155 Identities=12% Similarity=-0.029 Sum_probs=112.1
Q ss_pred HHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh
Q 016442 207 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 286 (389)
Q Consensus 207 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
..+.....+|.+.++ +|.++.+.+...+...++..+++++.|++.||+||| .....+....++.......
T Consensus 35 ~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr---------~~~~~~~~~~~~~~~~~~~ 104 (394)
T PRK10213 35 VEFLPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR---------YVVILFAVLLTLSCLLVSF 104 (394)
T ss_pred HHHHHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH---------HHHHHHHHHHHHHHHHHHH
Confidence 333445567776665 899999999999999999999999999999999999 3334444444444444444
Q ss_pred ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 287 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
.++.+..+..-.+.....+...+....+..|..| |+|+++.++.....+++..++|.+.+.+.+..| ++..|...+++
T Consensus 105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~~~l 183 (394)
T PRK10213 105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAAAVM 183 (394)
T ss_pred HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHH
Confidence 4544444444333333333344556666777776 799999999999999999999999999999887 88888887766
Q ss_pred HHHHHHH
Q 016442 366 YFLSALF 372 (389)
Q Consensus 366 ~~~~~~~ 372 (389)
.+++.+.
T Consensus 184 ~~~~~l~ 190 (394)
T PRK10213 184 GVLCIFW 190 (394)
T ss_pred HHHHHHH
Confidence 5554433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-13 Score=119.02 Aligned_cols=137 Identities=28% Similarity=0.387 Sum_probs=127.8
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCee-hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKI-IMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+..... ++.+.+.+..++.|++.+...+...++
T Consensus 212 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~ 289 (352)
T cd06174 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--PSLALLLVALLLLGFGLGFAFPALLTL 289 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhccchhHHHH
Confidence 4677888999999999999999999999999 9999999999999999888 889999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWL 141 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 141 (389)
+.|..|+|+|++.++..+...++|..+++.+.+.+.+..+|+..+.+.+++.++..+...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 290 ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999999999999999999999999988887666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-12 Score=113.54 Aligned_cols=170 Identities=11% Similarity=-0.067 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 271 (389)
+.++......+............+|.+.++ +|.+..+.++..+...++..++.++.|++.||+||| ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~ 72 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK---------HILL 72 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH---------HHHH
Confidence 456667777777788878888888887766 899999999999999999999999999999999998 3344
Q ss_pred HHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 272 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
.+....++........++.+.....-++.+...+...+.......+..| ++|+++++.......++..++|.+.+.+.+
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 4444455555555555555554444333333223333444556677776 689999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 016442 351 LVGSFQGFLLLTSLLYFLSALF 372 (389)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~ 372 (389)
..| ++..|.+.++..++..+.
T Consensus 153 ~~g-wr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 153 EFS-WRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred hcc-HHHHHHHHHHHHHHHHHH
Confidence 877 888888877766555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=114.80 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHHcCCchhhHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLTRKILQ 270 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 270 (389)
|.++..+...+...+++++...+++.|+++.+|++..++.+....+.....+..+++|+++|| +||| ...
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r---------~~~ 84 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK---------RTI 84 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH---------HHH
Confidence 456666777778889999999999999999999999999988888887888888899999999 9999 333
Q ss_pred HHHhhHHHHHHHHHhhccc-hhhHHHHHHHHHhhhhccccccchhhhcccc-c--chhHHHHHHHHHhhhhhhHHhHHHH
Q 016442 271 SIGFIAPGIALIGLTAAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q--YSGVLHGISNTAGTFAAILGTVGAG 346 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~g~~~g~~~~~~~~g~~~~~~~~g 346 (389)
..+.+...+.........+ .........+.....+...+.......|.+| + +|+.+.++.....++|..++|.+.|
T Consensus 85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g 164 (489)
T PRK10207 85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP 164 (489)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 3344443433333333222 2222222222223334444555667777665 4 4577899999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 347 FFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 347 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
++.++.| |+..|.+.++..+++.+.+...
T Consensus 165 ~l~~~~g-w~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 165 VIADKFG-YSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHhhC-hHHHHHHHHHHHHHHHHHHHHc
Confidence 9999987 8899988766555555544443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=111.95 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH--HHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh
Q 016442 197 IIVANAMHSWGFFVILSWMPIY--FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF 274 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 274 (389)
+....+....++.....+.|.+ +++++|.++.+.++..+...++..++.++.|+++||++|| ..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~ 78 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK---------PVLLAGL 78 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc---------HHHHHHH
Confidence 3334444444455555555544 4555899999999999999999999999999999999999 2333333
Q ss_pred hHHHHHHHHHhhccchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 275 IAPGIALIGLTAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
....+........++.+..... .+.+.+... ..+.......+..| ++++...+..+....++..++|.+.+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 157 (401)
T PRK11043 79 SLFALGSLGMLWVESAAQLLVLRFVQAVGVCS-AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF 157 (401)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333334444333332 222333222 22333445556665 67888889988889999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 353 GSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
| ++..+...++..++..+.....++
T Consensus 158 g-~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 158 G-WQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred C-hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7 888888777776666555444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-11 Score=110.91 Aligned_cols=168 Identities=13% Similarity=-0.017 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh
Q 016442 195 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF 274 (389)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 274 (389)
............+.......+|.+.++ +|.++.+.++..+...++..++.++.|+++||+||| ..+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~l~~~~ 75 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK---------PVAIPGA 75 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh---------HHHHHHH
Confidence 334444555555666666778877766 799999999999999999999999999999999988 3333444
Q ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 275 IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
....+........++.+......++.....+...+....+..|..| ++|+++.+..+....++..++|.+.+.+.+..|
T Consensus 76 ~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 76 ALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4444444444444444333333222222223333445566666665 899999999999999999999999999888776
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 016442 354 SFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~ 373 (389)
+...+.+.+++.++..+..
T Consensus 156 -~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 156 -WQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred -hHHHHHHHHHHHHHHHHHH
Confidence 8888877776665555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=111.53 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
+....+..+.............|.+.++ +|.++.+.++..+...++..++.++.|++.||+||| .....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~~~~~ 83 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGE-FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR---------LPMVTS 83 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHH
Confidence 3445555666666666666777766555 899999999999999999999999999999999999 333334
Q ss_pred hhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
.+...+..+.....++.+......++.+...+...+....+..|..| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 84 IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444433333333333444455566666666 89999999999999999999999999998875
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 353 G-SFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 353 g-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
+ ++...+.+.++..++..+.....+
T Consensus 164 ~~~w~~~f~~~~~~~~~~~~~~~~~~ 189 (405)
T TIGR00891 164 GDGWRALFFISILPIIFALWLRKNIP 189 (405)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 377777766555544444333333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=111.23 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
.+..++...+.......+|.|+++++|.|+.+.++..+...+...+.++..|+++||+|||| .+...+....
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~--------~~~~~~~~~~ 74 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK--------GLILFCCLLA 74 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch--------HHHHHHHHHH
Confidence 34567777788888899999998889999999999999999999999999999999999882 2222223332
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHH--HHHHHHHhhhhhhHHhHHHHHHHhhhhh
Q 016442 278 GIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVL--HGISNTAGTFAAILGTVGAGFFVELVGS 354 (389)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~--~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 354 (389)
..........++.+.....-.+..+......+.......|..| +.|+.+ .+......++|..++|.+.+.+.+..|
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~- 153 (375)
T TIGR00899 75 ALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG- 153 (375)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-
Confidence 3332333334444433333222222223334444555566655 455543 677788889999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016442 355 FQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (389)
++..|++.+++.++..+....
T Consensus 154 ~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 154 FTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776665554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=110.14 Aligned_cols=147 Identities=13% Similarity=0.049 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI 272 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 272 (389)
+++...+..+...........+.|.++++++|+|+.+.++..+...++..++.++.|+++||+||| .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~ 72 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR---------YTTTL 72 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch---------HHHHH
Confidence 355566677777777788888999878777999999999999999999999999999999999998 33333
Q ss_pred HhhHHHHHHHHHhhcc-chhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 273 GFIAPGIALIGLTAAK-SPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
+.+...+........+ +.+..... ++.+.+ ... ......+..+..| ++|+++.++.....++|..+++.+.+.+.
T Consensus 73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444444443334 44433333 333333 222 2334556666666 79999999999888899888888887776
Q ss_pred h
Q 016442 350 E 350 (389)
Q Consensus 350 ~ 350 (389)
+
T Consensus 151 ~ 151 (366)
T TIGR00886 151 G 151 (366)
T ss_pred H
Confidence 5
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=116.46 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhh
Q 016442 196 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI 275 (389)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
...+..++............|.+.++ +|.++.+.++..+...++..++.++.|++.||+||| .....+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~ 75 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR---------RLFLISTF 75 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH---------HHHHHHHH
Confidence 34455555666666677778877776 899999999999999999999999999999999998 33344444
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh
Q 016442 276 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS 354 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 354 (389)
...+........++....+..-++.+...+...+....+..|..| ++|+++.++......+|..++|.+.+++.++.|
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~- 154 (485)
T TIGR00711 76 AFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH- 154 (485)
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-
Confidence 444444444444555444444333333334444556667777766 899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016442 355 FQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (389)
++..|+..+...++..+....
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~ 175 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFF 175 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHH
Confidence 888888776666555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=110.70 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhH
Q 016442 197 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
..+.+++............| .+++++|++..+.++..+...++..++.++.|++.||+||| .....+.+.
T Consensus 13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r---------~~~~~~~~~ 82 (412)
T TIGR02332 13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR---------RWIAGIMVL 82 (412)
T ss_pred HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH---------HHHHHHHHH
Confidence 34444444444555555566 56666999999999999999999999999999999999999 344444545
Q ss_pred HHHHHHHHhhccchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhh---
Q 016442 277 PGIALIGLTAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL--- 351 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--- 351 (389)
.++........++.+..... ++.+.+.+ ...+....+..|..| ++|+++.|+.+....+|..+++.+.+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45444444444554444433 33333333 334555567788777 7899999999999999999999999998753
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHH
Q 016442 352 ---VGSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 352 ---~g~~~~~~~~~~~~~~~~~~~~ 373 (389)
.| ++..|.+.++..++..++.
T Consensus 162 ~~~~g-wr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 162 MALKG-WQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred CCccc-hhHHHHHHHHHHHHHHHHH
Confidence 44 8889888777665544433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=110.21 Aligned_cols=154 Identities=12% Similarity=0.041 Sum_probs=113.4
Q ss_pred HHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhcc
Q 016442 209 FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAK 288 (389)
Q Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (389)
.......|...++ +|.|..+.++..+...++..++.+..|++.||+||| .+...+....++........+
T Consensus 26 ~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r---------~~l~~~~~l~~~~~~~~~~a~ 95 (393)
T PRK09705 26 TSVGPLLPQLRQA-SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER---------RSVAISLLLIAVGALMRELYP 95 (393)
T ss_pred hccchhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHCc
Confidence 4456677776665 899999999999999999999999999999999999 555666666666666666666
Q ss_pred chhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 016442 289 SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368 (389)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 368 (389)
+....+..-++.+...+...+.......+.+|++|+.++|........|..+++.+.+++.++.++++..+...++..++
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55554444444333333444455566777788889999999999999999999999999998764476666555544444
Q ss_pred HHHH
Q 016442 369 SALF 372 (389)
Q Consensus 369 ~~~~ 372 (389)
....
T Consensus 176 ~~~~ 179 (393)
T PRK09705 176 ALFA 179 (393)
T ss_pred HHHH
Confidence 3333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-11 Score=105.29 Aligned_cols=174 Identities=18% Similarity=0.050 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 271 (389)
.+.+.+.+..|.....++.....+|+..+| +|.|..++|...+.+..+..++.++...+.||+.|| .++.
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr---------~lLl 82 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR---------RLLL 82 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH---------HHHH
Confidence 356677888888999999999999999998 899999999999999999999999999999999999 3334
Q ss_pred HHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 272 IGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
..+......-+.....++.+.....=++.....+.+.+.......++.| ++|+++.++..+...++..+|.++..++-|
T Consensus 83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444444444444555666655555444444445555666666666665 899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 351 LVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+| |+..|+..+.+.+++.+..+..
T Consensus 163 ~~G-WR~~F~~ia~l~ll~~~~~~~~ 187 (394)
T COG2814 163 LFG-WRATFLAIAVLALLALLLLWKL 187 (394)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence 998 9999999888887777655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-13 Score=123.57 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=110.5
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhc--CCeehhHH--HHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhh
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYY--GGKIIMAW--GVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
+.+++.++..++..++.++.|+++||. ++|+...+ +..+.+++.+++... ++++.+++.+++.|++.+...+..
T Consensus 277 ~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 277 EAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHhchHHHHH
Confidence 456788888899999999999999984 34433333 334444555556666 889999999999999999999999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc-CcchhHHHHhhHHHHHHH
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGPFVIFGLSGFLWVL 138 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~ 138 (389)
.+++.|.+|++++++.+++++...++|..+||.+++.+.+.. +|++.|++.++..++..+
T Consensus 355 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999998877 599999998887666544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-11 Score=110.36 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=105.7
Q ss_pred HHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH
Q 016442 205 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL 284 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (389)
....+......|.+. +++|++..+.++..+...++..++.++.|+++||+|+| .....+.+..++.....
T Consensus 49 ~~~~~~~~~~~~~l~-~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r---------~~~~~~~~~~~~~~~~~ 118 (476)
T PLN00028 49 FVSTFAAAPLLPIIR-DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR---------YGSAFLLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHHHH
Confidence 333444455555554 44899999999988888889999999999999999998 33333444444444444
Q ss_pred hhccchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhh---------hh
Q 016442 285 TAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL---------VG 353 (389)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---------~g 353 (389)
...++....... ++.+.+... . .....+..+..| ++||++.|+.+...++|..+++.+.+.+.+. .|
T Consensus 119 ~~~~s~~~l~~~r~l~G~~~~~-~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g 196 (476)
T PLN00028 119 SLVSSATGFIAVRFFIGFSLAT-F-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA 196 (476)
T ss_pred HHhcCHHHHHHHHHHHHHHHHh-h-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 444444433332 333333322 2 223345667776 7999999999988888888888777665432 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 354 SFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
++..|.+.+++.++..+....+.+
T Consensus 197 -Wr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 197 -WRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888888777666555555443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-11 Score=112.65 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
+..+.+..++...-......-.|.+.++ +|.++.+.++..+.+.++.....+..|+++||+||| .....+
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk---------~~l~~~ 77 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK---------RLLMLG 77 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHH
Confidence 3445566666666677778888988776 899999999999999999999999999999999999 344444
Q ss_pred hhHHHHHHHHHhhccchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL 351 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 351 (389)
.....+........++.+..+.. .+.+.+.+...+........+..| ++|+++.|+......+|..+||.+.|.+.++
T Consensus 78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444444444455555554444 334444443333222334455544 7999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 352 VGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 352 ~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
.| |++.|++...+.++..++...
T Consensus 158 ~g-wr~~f~i~~~~~~~~~~l~~~ 180 (495)
T PRK14995 158 FY-WGSVFLINVPIVLVVMGLTAR 180 (495)
T ss_pred CC-hHHHHHHHHHHHHHHHHHHHH
Confidence 87 889988877666655544433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=109.16 Aligned_cols=159 Identities=11% Similarity=0.025 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH
Q 016442 205 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL 284 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (389)
......+...+|.+.+| +|.|+.+.+++.+...++..++++..|++.||+||| .+...............
T Consensus 4 ~~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr---------~~~~~~~~~~~~~~~~~ 73 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR---------WFLFGSLATFAAAAGRL 73 (368)
T ss_pred hHHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch---------HHHHHHHHHHHHHHHHH
Confidence 34455666777777666 899999999999999999999999999999999977 22222222222221111
Q ss_pred hhccchhhHHHH-HHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHH
Q 016442 285 TAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTS 363 (389)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 363 (389)
...++....... ++.+.+.. ...+......+..++|+|+++.++.+....+|..+++.+.+.+.++.| |+..|...+
T Consensus 74 ~~~~~~~~l~~~R~l~G~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~ 151 (368)
T TIGR00903 74 LDPFNYEWLLACQLLAALGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIA 151 (368)
T ss_pred HHhccHHHHHHHHHHHHhHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHH
Confidence 221233333332 33333333 222233333334445899999999999999999999999999999887 999998877
Q ss_pred HHHHHHHHHHHH
Q 016442 364 LLYFLSALFYII 375 (389)
Q Consensus 364 ~~~~~~~~~~~~ 375 (389)
++.++..+....
T Consensus 152 ~l~~~~~~~~~~ 163 (368)
T TIGR00903 152 AVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHHHHH
Confidence 776555544433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-11 Score=108.44 Aligned_cols=175 Identities=10% Similarity=0.065 Sum_probs=113.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHH-HHHHHHHHHHHHHHHHHHcCCchhhHHHHH
Q 016442 191 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWS-VMAFTGYLGGLLSDMLIQRGTSVTLTRKIL 269 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 269 (389)
|.+.+...+..++...+.......+|.|+++++|.|+.+.|...+...+ ....+.+.+++ .||+|+| +..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r-------~~~~ 85 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDR-------KSLI 85 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccch-------hHHH
Confidence 5666777777888888888889999999998899999999998765555 44555555666 9999998 2222
Q ss_pred HHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cch--hHHHHHHHHHhhhhhhHHhHHHH
Q 016442 270 QSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYS--GVLHGISNTAGTFAAILGTVGAG 346 (389)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--g~~~g~~~~~~~~g~~~~~~~~g 346 (389)
..+.+..++........++.+.......+..+......+....+..+..+ +.| +...+..+...++|..++|++.+
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~ 164 (393)
T PRK15011 86 -VFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY 164 (393)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 22222222223333333444333222222223333334444455555444 333 34557888889999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 347 FFVELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 347 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
.+.|+.| ++..|+..+...++..+....
T Consensus 165 ~l~~~~g-w~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 165 ALAMGFS-FTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHhcC-hHHHHHHHHHHHHHHHHHHHh
Confidence 9999887 889888887766655554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=111.50 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=107.8
Q ss_pred HHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc
Q 016442 208 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA 287 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (389)
.+......|.+.++ +|.+..+.++..+...++..++.++.|+++||+|||+. ...+....++........
T Consensus 19 ~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~---------~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 19 VYTWTLLAPPLGRY-FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAV---------AMLGGILYGLGFTFYAIA 88 (377)
T ss_pred HhhhhhHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccch---------hHHhHHHHHHHHHHHHHH
Confidence 44555666655554 89999999999999999999999999999999999932 233333333333444444
Q ss_pred cchhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 016442 288 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF 367 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 367 (389)
++.+.......+.+...+...+.......+..||+|+++.++......+|..+++++.+.+.+..| ++..|...++..+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~ 167 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFL 167 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHH
Confidence 444443333332222222233333445666678889999999999999999888888888887766 8888888777766
Q ss_pred HHHHHHHH
Q 016442 368 LSALFYII 375 (389)
Q Consensus 368 ~~~~~~~~ 375 (389)
+..+....
T Consensus 168 ~~~~~~~~ 175 (377)
T TIGR00890 168 LVIVLGAF 175 (377)
T ss_pred HHHHHHHH
Confidence 65554433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=110.78 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=112.8
Q ss_pred HHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh
Q 016442 207 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 286 (389)
Q Consensus 207 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
+.......+|.+.++ +|.++.+.+...+...++..++.++.|++.||+||| .....+....++.......
T Consensus 6 ~~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 6 AIDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK---------PVILGGTLVFALAAVACAL 75 (377)
T ss_pred HHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh---------HHHHHHHHHHHHHHHHHHH
Confidence 344555777888777 799999999999999999999999999999999988 3334444444444444444
Q ss_pred ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 287 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
.++.+......++.....+...+....+..+..| ++|+++.++.+....+|..++|.+.+.+.+..+ ++..|...+..
T Consensus 76 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 154 (377)
T PRK11102 76 AQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALA 154 (377)
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHH
Confidence 4444443333333333333344455566677766 789999999999999999999999999999887 88888877766
Q ss_pred HHHHHHHHH
Q 016442 366 YFLSALFYI 374 (389)
Q Consensus 366 ~~~~~~~~~ 374 (389)
.++..+...
T Consensus 155 ~~~~~~~~~ 163 (377)
T PRK11102 155 AILAAALVF 163 (377)
T ss_pred HHHHHHHHH
Confidence 666554433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=110.07 Aligned_cols=173 Identities=15% Similarity=0.061 Sum_probs=117.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q 016442 191 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 270 (389)
+|+++.+.+..++...+........+...++ ++.++.+.++..+...+...+..++.|++.||++||+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl--------- 71 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM--------- 71 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh---------
Confidence 4567777788888777666666666666555 788888999999999999999999999999999999322
Q ss_pred HHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 271 SIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
..+....++..+......+. ...-++.+...+...+...++..|..| |+|++++|+.+....++..+||.+.|.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 72 FIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222111111222 222223333344556677777788777 79999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 350 ELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
+.. +...+.+.+.+.+++.+....+++
T Consensus 149 ~~~--~~~~~~i~~~~~~~~~~~~~~l~~ 175 (393)
T PRK11195 149 DPH--AEAALAVCALIYLLAALFNLFIPR 175 (393)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 863 555555555544444444444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=109.27 Aligned_cols=159 Identities=9% Similarity=0.060 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 271 (389)
+.+....+..++...+......+.|.++++ +|.++.+.+...+...++..++.++.|++.||++|| ....
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k---------~~l~ 82 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL---------KTMM 82 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH---------HHHH
Confidence 455566777777777777777888988876 799999999999999999999999999999999999 2222
Q ss_pred HHhhHHHHHHHH---Hhhc-cchhhHHHH-HHHHHhhhhccccccchhhhcc-cccchhHHHHHHHHHhhhhh-hHHhHH
Q 016442 272 IGFIAPGIALIG---LTAA-KSPVMASAW-LTLAIGMKSFSHSGFLVNLQEI-APQYSGVLHGISNTAGTFAA-ILGTVG 344 (389)
Q Consensus 272 ~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~-~~~~~~ 344 (389)
.+....+..... .... ++.+..... .+.+.+... ..+.......+. ++|+|++++|+.+...++|. .++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~ 161 (402)
T TIGR00897 83 IGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPL-FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY 161 (402)
T ss_pred HHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332322221 1221 233322222 222333222 222333344444 55899999999999999996 589999
Q ss_pred HHHHHhhhhhHHHHHHHH
Q 016442 345 AGFFVELVGSFQGFLLLT 362 (389)
Q Consensus 345 ~g~l~~~~g~~~~~~~~~ 362 (389)
.+.+.+..| +...++..
T Consensus 162 ~~~l~~~~g-~~~~~~~~ 178 (402)
T TIGR00897 162 SSYAIPAFG-EMNTLWSA 178 (402)
T ss_pred HHhcccccc-hHHHHHHH
Confidence 999988877 44444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=112.54 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHH
Q 016442 200 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGI 279 (389)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (389)
..+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||++|| .....+.....+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~ 94 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK---------RVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH---------HHHHHHHHHHHH
Confidence 3333334445555666666655 899999999999999999999999999999999988 333344444444
Q ss_pred HHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHH
Q 016442 280 ALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF 358 (389)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 358 (389)
........++.+......++.....+...+....+..|..| ++|+++.|+.+....+|..++|.+.+.+.+..| ++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~ 173 (398)
T TIGR00895 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSL 173 (398)
T ss_pred HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceee
Confidence 44444444444444443333333334455666777778777 789999999999999999999999999999887 7777
Q ss_pred HHHHHHHHHHHHH
Q 016442 359 LLLTSLLYFLSAL 371 (389)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (389)
+.+.++...+..+
T Consensus 174 ~~~~~~~~~~~~~ 186 (398)
T TIGR00895 174 FYVGGIAPLLLLL 186 (398)
T ss_pred hhhhhhHHHHHHH
Confidence 7776544444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=108.30 Aligned_cols=151 Identities=12% Similarity=0.062 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q 016442 191 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 270 (389)
++.++.+....++...........+|.+.++ +|.|..+.|+..+...++..+++++.|++.||+||| ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k---------~~~ 74 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN---------RSY 74 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHH
Confidence 4557778888888888888899999999987 799999999999999999999999999999999999 333
Q ss_pred HHHhhHHHHHHHHHhhccchhhHHHHHHH-HHhhhhcccccc-chhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 271 SIGFIAPGIALIGLTAAKSPVMASAWLTL-AIGMKSFSHSGF-LVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
..+.+..+.........++.+.....-++ +.+.. ...+.. .....+.++++|+++.|..+...++|..++|.+.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 75 YLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCA-MIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444444444433333 33333 333333 3334444558999999999999999999999999998
Q ss_pred Hhhh
Q 016442 349 VELV 352 (389)
Q Consensus 349 ~~~~ 352 (389)
.+..
T Consensus 154 ~~~~ 157 (381)
T PRK03633 154 STEL 157 (381)
T ss_pred cccc
Confidence 7753
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=111.79 Aligned_cols=172 Identities=13% Similarity=0.041 Sum_probs=107.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q 016442 191 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 270 (389)
++.++...+...........+....| ++++ .|.++.+.++..+...++..++.++.|++.||++||+. .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~---------~ 94 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF---------L 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee---------h
Confidence 33444444444444443444455555 4555 49999999999999999999999999999999998832 2
Q ss_pred HHHhhHHHHHHHHHhhc----cchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHH
Q 016442 271 SIGFIAPGIALIGLTAA----KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGA 345 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~ 345 (389)
..+.+..++........ ++........++.....+...+.......+..| ++|++++|+.+....++..++|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 95 PAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 22333333332222211 222222222222222223333444445556665 7999999999999999999999988
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 016442 346 GFFVELVGSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 346 g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 373 (389)
+...+...+|+..|+..+++.++..+..
T Consensus 175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~ 202 (438)
T TIGR00712 175 LLGMAWFNDWHAALYFPAICAIIVALFA 202 (438)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 8766543348888888777766654433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-11 Score=109.02 Aligned_cols=165 Identities=11% Similarity=0.036 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhH
Q 016442 197 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
.....++............|.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ ....+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~---------~~~~~~~~ 89 (406)
T PRK11551 20 CFLVALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKR---------ILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---------hHHHHHHH
Confidence 3444455555556666677777666 8999999999999999999999999999999999992 22333333
Q ss_pred HHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhH
Q 016442 277 PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSF 355 (389)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 355 (389)
..+..+.....++.+......++.....+...+....+..|..| ++|++++++.+....+|..+++.+.+.+.+..+ +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~ 168 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-W 168 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-H
Confidence 33333333334444444433333333333344555666777776 799999999999999999999999888888776 8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016442 356 QGFLLLTSLLYFLSALF 372 (389)
Q Consensus 356 ~~~~~~~~~~~~~~~~~ 372 (389)
+..|++.+++.++..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887766655544443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-11 Score=108.71 Aligned_cols=157 Identities=15% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh
Q 016442 207 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 286 (389)
Q Consensus 207 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
....+...+|.+.++ +|.++.+.++..+...++..++.++.|+++||++|| .....+.....+.......
T Consensus 28 ~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~ 97 (406)
T PRK15402 28 ANDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR---------PVMLAGVAFFILTCLAILL 97 (406)
T ss_pred hhhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHHHHHH
Confidence 344455566665555 899999999999999999999999999999999998 3333344444444333334
Q ss_pred ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 287 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
.++.+..+....+.+...+...+.......|..| ++|+++.++......++..++|.+.+.+.+..+ ++..+++.+++
T Consensus 98 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~~~~~~~~~ 176 (406)
T PRK15402 98 AQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRGMFVLFAAL 176 (406)
T ss_pred HccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHH
Confidence 4444433333232222222333444555666666 688888999888888999999999999999876 88888877777
Q ss_pred HHHHHHHHH
Q 016442 366 YFLSALFYI 374 (389)
Q Consensus 366 ~~~~~~~~~ 374 (389)
.+++.+...
T Consensus 177 ~~~~~~~~~ 185 (406)
T PRK15402 177 AALSFFGLW 185 (406)
T ss_pred HHHHHHHHH
Confidence 666555433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=111.62 Aligned_cols=158 Identities=14% Similarity=0.076 Sum_probs=112.5
Q ss_pred HHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh
Q 016442 207 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 286 (389)
Q Consensus 207 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
....+....|. +++++|.++.+.+++.+...++..++.++.|++.||+|||+.. ..+.............
T Consensus 9 ~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~---------~~~~~~~~~~~~~~~~ 78 (399)
T TIGR00893 9 DRANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL---------AVFIVIWGVFTGLQAF 78 (399)
T ss_pred HHHhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee---------HHHHHHHHHHHHHHHH
Confidence 33444555555 5555899999999999999999999999999999999988432 2233333333333333
Q ss_pred ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 287 AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
.++.+......++.+...+...+....+..|..| |+|+++.++.+....+|..++|.+.+.+.+..+ ++..|...++.
T Consensus 79 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 157 (399)
T TIGR00893 79 AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVL 157 (399)
T ss_pred HcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHH
Confidence 3444444444333333344455666777788777 799999999999999999999999999999887 88888877776
Q ss_pred HHHHHHHHHH
Q 016442 366 YFLSALFYII 375 (389)
Q Consensus 366 ~~~~~~~~~~ 375 (389)
.++..+....
T Consensus 158 ~~~~~~~~~~ 167 (399)
T TIGR00893 158 GIIWGVLWLK 167 (399)
T ss_pred HHHHHHHhhh
Confidence 6655554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=109.32 Aligned_cols=175 Identities=14% Similarity=0.052 Sum_probs=115.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q 016442 191 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 270 (389)
||.+|......++...+......++|.|+++++|+++.+.+...+...+...+++++.|+++||+|||+ ..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-------~~~~ 73 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK-------HLLW 73 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-------HHHH
Confidence 578888888999999999999999999999889999999999999999999999999999999999982 2222
Q ss_pred HHHhhHHHH-HHHHHhhcc----chhh-HHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHH
Q 016442 271 SIGFIAPGI-ALIGLTAAK----SPVM-ASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVG 344 (389)
Q Consensus 271 ~~~~~~~~~-~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 344 (389)
......... ........+ .... .....++.........+....+..+.. +.++...|......++|..++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~ 152 (396)
T TIGR00882 74 IISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASI 152 (396)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHH
Confidence 111111111 111111111 0111 111111111112222333333444432 234556778888889999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 345 AGFFVELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 345 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
.|.+.+. + ++..|+..+.+.++..+..+.
T Consensus 153 ~g~l~~~-~-~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 153 AGILFSI-D-PQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred Hhhhhcc-C-chHHHHHHHHHHHHHHHHHHH
Confidence 9988775 4 788888877776665554443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=107.54 Aligned_cols=160 Identities=12% Similarity=-0.006 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH
Q 016442 201 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA 280 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
..+...........+|.+.++ +|.|+.+.++..+...++..++.++.|+++||+||| .....+.....+.
T Consensus 17 ~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr---------~~~~~~~~~~~~~ 86 (394)
T PRK11652 17 VAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR---------PVILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHHHHHHH
Confidence 333344444455566766655 899999999999999999999999999999999998 2223333333333
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHH
Q 016442 281 LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL 359 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 359 (389)
.......++.+......++.....+...+.......+..+ ++++.+.+..+....++..++|.+.+.+.+..| ++..|
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~f 165 (394)
T PRK11652 87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRACY 165 (394)
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHHH
Confidence 3333333444333333222222222223333445556555 789999999999999999999999999998877 88888
Q ss_pred HHHHHHHHHHHH
Q 016442 360 LLTSLLYFLSAL 371 (389)
Q Consensus 360 ~~~~~~~~~~~~ 371 (389)
.+.++..++..+
T Consensus 166 ~~~~~~~~~~~~ 177 (394)
T PRK11652 166 LFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877665554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.5e-11 Score=111.37 Aligned_cols=163 Identities=12% Similarity=0.057 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
+....+..++..+.........|.+.++ +|.++.+.+...+...++..++.++.|++.||+||| .....+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~ 91 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQGE-FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR---------LAMVIS 91 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHH
Confidence 4445555555566666666667766554 899999999999999999999999999999999998 333344
Q ss_pred hhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
.+..++........++.+......++.+...+...+....+..|..| ++|+++.++.+....+|..++|.+.+.+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 171 (496)
T PRK03893 92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44444444444444444433333333333233334444556666666 78999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHH
Q 016442 353 GSFQGFLLLTSLLYF 367 (389)
Q Consensus 353 g~~~~~~~~~~~~~~ 367 (389)
+ +...|.+..+..+
T Consensus 172 ~-w~~~f~~~~~~~~ 185 (496)
T PRK03893 172 G-WRALFFIGILPII 185 (496)
T ss_pred C-HHHHHHHHHHHHH
Confidence 7 8888776444333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.2e-12 Score=117.11 Aligned_cols=141 Identities=18% Similarity=0.098 Sum_probs=106.2
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
+.++..+...++..++.+.+|+++||+|||+.+.....+..++.....+...++.+...+.+++.|+.............
T Consensus 295 ~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 374 (467)
T PRK09556 295 DAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAA 374 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667778889999999999999999999998776654444433222222115676777888888865444333344677
Q ss_pred hcccCcCchhhHHHHHHhhhhh-hhhhhhhhhhHhhc------------ccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 83 ARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMS------------QAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~------------~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
.|.+|+++|+.+.|+.+...++ |..++|.+.|.+.+ ..||+..|++..+..++..+.....
T Consensus 375 ~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 375 VGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999998886 77999999999999 5689999998877777765555443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=105.20 Aligned_cols=147 Identities=12% Similarity=0.044 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQS 271 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 271 (389)
|.++...+.........+.+....+.+-++++|+|+.|.+++.+...+...+.++..|++.||+|.| .+..
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R---------~v~~ 104 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR---------RWTV 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHH
Confidence 4555555554444444555555555555546999999999999999999999999999999999998 3333
Q ss_pred HHhhHHHHHHHHHhhc-----cchhhHHH-HHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHH
Q 016442 272 IGFIAPGIALIGLTAA-----KSPVMASA-WLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVG 344 (389)
Q Consensus 272 ~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~ 344 (389)
.+.+..++........ ++.+..+. ..+.+.+ +...+.....+++.+| ++||++.|+....+++|..+++.+
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333333322 33333333 3333443 3344555666777777 789999999987777887777666
Q ss_pred HHHHH
Q 016442 345 AGFFV 349 (389)
Q Consensus 345 ~g~l~ 349 (389)
.+.+.
T Consensus 183 ~p~~i 187 (462)
T PRK15034 183 APLVI 187 (462)
T ss_pred HHHHH
Confidence 65544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.7e-11 Score=108.29 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
+....+..+.............|.+. +++|.++.+.++..+...++..++.++.|++.||+||| .....+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r---------~~l~~~ 89 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIK-ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK---------PLMMWS 89 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHH
Confidence 34444555555555555555556544 45899999999999999999999999999999999998 444444
Q ss_pred hhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
....++........++.+.....-.+.+...+...+....+..|..| |+|+++.++......+|..+++.+.+.+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~ 169 (426)
T PRK12307 90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY 169 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence 44444444444444444444333333222223334445556666666 78999999999999999999999999998887
Q ss_pred hhHHHHHHHHHHH
Q 016442 353 GSFQGFLLLTSLL 365 (389)
Q Consensus 353 g~~~~~~~~~~~~ 365 (389)
+ ++..|.+....
T Consensus 170 ~-w~~~f~i~~~~ 181 (426)
T PRK12307 170 G-WRAAFFVGLLP 181 (426)
T ss_pred C-HHHHHHHHHHH
Confidence 6 88888765443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=105.59 Aligned_cols=164 Identities=13% Similarity=-0.051 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHH
Q 016442 199 VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPG 278 (389)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (389)
..++....+......++|.|+++ +|.|..+.|...+...+...+++++.|++.||++|+... ++.+. +.....
T Consensus 11 ~~~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~----~~~~~-~~~~~~- 83 (382)
T PRK11128 11 LSYFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPA----LRLLA-LLTLLF- 83 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHH----HHHHH-HHHHHH-
Confidence 34566667777888899999988 699999999999999999999999999999999985111 11221 111111
Q ss_pred HHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHH
Q 016442 279 IALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGF 358 (389)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 358 (389)
........++.+.......+.....+...+...+...+. +++|+++.|......++|..++|.+.+.+.++.| ++..
T Consensus 84 -~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~ 160 (382)
T PRK11128 84 -AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAI 160 (382)
T ss_pred -HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHH
Confidence 112222234444333332322222333444444455544 4567888888899999999999999999999988 8888
Q ss_pred HHHHHHHHHHHHHH
Q 016442 359 LLLTSLLYFLSALF 372 (389)
Q Consensus 359 ~~~~~~~~~~~~~~ 372 (389)
|+..++..++..+.
T Consensus 161 f~~~~~~~~~~~~~ 174 (382)
T PRK11128 161 LWILTAGVASMLLG 174 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776655544433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=105.50 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=108.8
Q ss_pred HHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc
Q 016442 208 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA 287 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (389)
......-+|...+ .+|.+..+.++..+.+.++..++.++.|+++||+||| ..+..+.....+........
T Consensus 32 ~~~~~p~l~~i~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 32 TDLIQPGIINVVR-DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR---------PVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHhhccCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch---------HHHHHHHHHHHHHHHHHHHc
Confidence 3344444555444 4899999999999999999999999999999999999 33333344444444444444
Q ss_pred cchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 288 KSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 288 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
++.+..+.. ++.+.+.. ...+....+..|..| +++++++++.+....++..++|.+.+.+.+..| ++..|++.++.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~~~ 179 (413)
T PRK15403 102 TSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVM 179 (413)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 554444433 33333332 333344566777776 688999999999999999999999999998876 88999888877
Q ss_pred HHHHHHHH
Q 016442 366 YFLSALFY 373 (389)
Q Consensus 366 ~~~~~~~~ 373 (389)
.+++.+..
T Consensus 180 ~~i~~~~~ 187 (413)
T PRK15403 180 GLIAFVGL 187 (413)
T ss_pred HHHHHHHH
Confidence 76665543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=105.40 Aligned_cols=162 Identities=10% Similarity=-0.063 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh
Q 016442 195 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF 274 (389)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 274 (389)
+.+.+.++....++.....++|.|+++ +|.|..+.|...+...+...++.++.+.++||.+|+.. .+ .+...+.
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~----~~-~~~~~~~ 80 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII----AL-RLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH----HH-HHHHHHH
Confidence 345666777777788888999999988 79999999999999999999999999999999986511 01 1111111
Q ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh
Q 016442 275 IAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS 354 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 354 (389)
..... ......++.+.......+...+.....+....+..+ .+++|++..|......++|..++|.+.|.+.++.|
T Consensus 81 ~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g- 156 (382)
T TIGR00902 81 AIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD- 156 (382)
T ss_pred HHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 11111 111233444444333332222333334444455444 34778999999999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 016442 355 FQGFLLLTSLLY 366 (389)
Q Consensus 355 ~~~~~~~~~~~~ 366 (389)
++..|.......
T Consensus 157 ~~~~f~~~~~~~ 168 (382)
T TIGR00902 157 EQNILAILTAGL 168 (382)
T ss_pred hhHHHHHHHHHH
Confidence 777777665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=110.38 Aligned_cols=163 Identities=12% Similarity=-0.001 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH
Q 016442 201 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA 280 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
+++.......+....|.+ ++++|.++.+.+++.+...++..++.++.|+++||+|||+ ....+.....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~---------~~~~~~~~~~~~ 73 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYL-VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV---------FLPIGLILCAIV 73 (379)
T ss_pred hhHHHHhHHhhhhhhHHH-HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee---------hhHHHHHHHHHH
Confidence 344455556666667755 4558999999999999999999999999999999999993 333444444444
Q ss_pred HHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhH-HHHHHHhhhhhHHHH
Q 016442 281 LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTV-GAGFFVELVGSFQGF 358 (389)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~-~~g~l~~~~g~~~~~ 358 (389)
.+.....++.+......++.....+...+....+..+..| ++|+++.++.+....+|..++|. +.+.+.+..+ ++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ 152 (379)
T TIGR00881 74 NLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWV 152 (379)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhH
Confidence 4444444444444444444444444555666777777777 78999999999999999999994 6666666655 7777
Q ss_pred HHHHHHHHHHHHHHHH
Q 016442 359 LLLTSLLYFLSALFYI 374 (389)
Q Consensus 359 ~~~~~~~~~~~~~~~~ 374 (389)
|.+.+++.++..+...
T Consensus 153 ~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 153 FIVPGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8777766555444333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=98.00 Aligned_cols=318 Identities=14% Similarity=0.026 Sum_probs=188.2
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccC
Q 016442 8 PSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 87 (389)
Q Consensus 8 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 87 (389)
.++-...+.++.++.+.+.|+.|+|+.+.++...+..-.+...+ +|-+-+++...+.|+|.+..+..--.+++|..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 56667788899999999999999999999999999988887766 577788999999999999999999999999999
Q ss_pred cCchhhHHHHHHhhhhhhhhhhhhhhhHhhccc--------Cc-chhH-------HHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 88 QTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--------GI-FGPF-------VIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 88 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~--------~w-~~~f-------~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
+|++.+..++.......+.++|..+-..+..+. +- ++.+ .+.-+..+...+...-.......+.
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~ 212 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPS 212 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCc
Confidence 999999999999999999888876654443211 11 1111 1111111111111111100110000
Q ss_pred CcCcHHHHHHHHHhcCCccccCCC-CCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh--cccc-
Q 016442 152 PQISKYELEYILREKQKPLLMGNK-HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVY--HIDL- 227 (389)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~- 227 (389)
++. ..+++ .. ....+..+...+++++|+...+....+..+....-.....|..+.-.. +.+.
T Consensus 213 ~~~-~~~~~-------------~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~ 278 (461)
T KOG3098|consen 213 KDV-VNCKS-------------SSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTT 278 (461)
T ss_pred cch-hhhhh-------------hccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcch
Confidence 000 00000 00 000111122335667788877766666665655556666676554332 2222
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH--hhc--c--------------c
Q 016442 228 RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--TAA--K--------------S 289 (389)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~--------------~ 289 (389)
...+......+.+.+++....+.+.+|..+.... ..+.++........... ..+ . .
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~------~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~ 352 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK------PTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPS 352 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC------cchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccc
Confidence 2233344455666666667777777776655332 22222222222222211 111 0 1
Q ss_pred hhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 290 PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
.........+.+..-.+.....+.+.+.+.|+.|.++.++......++..++-...+..
T Consensus 353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 353 YYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 11222233333333455666667778888899999999999888888887766655544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=114.22 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=112.0
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh---hccc------chHHHHHHHHHhhhhhccc
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW---AADT------SLLALLAMRAVVGLAEGVA 74 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~------~~~~l~~~r~l~G~~~~~~ 74 (389)
.++......++..++.+++|+++||+|||+.+..+..+.+++.++..+ ...+ +...+....+..+......
T Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (481)
T TIGR00879 321 AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGW 400 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccc
Confidence 456677788888999999999999999999999998888887776652 1112 2223333333333333334
Q ss_pred hhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 75 LPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 75 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
.+....++.|.+|+++|++++++.+...++|..++|.+.+.+.++.+|++.|++.++++++..+...+..||++
T Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 56677888999999999999999999999999999999999999899999999998888887777766655543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-10 Score=105.00 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=92.5
Q ss_pred HHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc---
Q 016442 211 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA--- 287 (389)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 287 (389)
+....| ++.++ |.++.+.+...+...++..++.++.|+++||+|+|+ +...+.+..++..+.....
T Consensus 48 ~~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~---------~l~~~~~~~~i~~~~~~~~~~~ 116 (452)
T PRK11273 48 FALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV---------FLPAGLILAAAVMLFMGFVPWA 116 (452)
T ss_pred HHHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch---------hHHHHHHHHHHHHHHHHhhhcc
Confidence 344555 55665 999999999999999999999999999999999992 2333333333333332221
Q ss_pred -cchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHH-HHHHhhhhhHHHHHHHHH
Q 016442 288 -KSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGA-GFFVELVGSFQGFLLLTS 363 (389)
Q Consensus 288 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~-g~l~~~~g~~~~~~~~~~ 363 (389)
.+.+..... .+.+.+ .+...+.......+..| ++|++++|+.+....+|..+.+++. ..+.... +++..|++.+
T Consensus 117 ~~~~~~~~~~~~l~gi~-~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-gw~~~f~i~~ 194 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-DWHAALYMPA 194 (452)
T ss_pred cccHHHHHHHHHHHHHH-HhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-cHHHHHHHHH
Confidence 222222222 233333 33333433444455555 7899999999999998875544443 3333333 4888888877
Q ss_pred HHHHHHHHH
Q 016442 364 LLYFLSALF 372 (389)
Q Consensus 364 ~~~~~~~~~ 372 (389)
+..++..+.
T Consensus 195 ~~~~~~~~l 203 (452)
T PRK11273 195 FAAILVALF 203 (452)
T ss_pred HHHHHHHHH
Confidence 665554433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-10 Score=101.43 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
++.++...+...+.........|.+ ++++|.++.+.+++.+...++..++++..+++.||+|+| .....+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r---------~~~~~g 74 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK---------AGILLG 74 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHH
Confidence 4455556666666665666777766 555899999999999999999999999999999999999 344444
Q ss_pred hhHHHHHHHHHhh---ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 274 FIAPGIALIGLTA---AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 274 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
....+........ .++.+......++.....+...+....+..+..| +++++..++.+...++|..++|.+.+.+.
T Consensus 75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333221 2333333333333333333444444555555555 78999999999999999999999998885
Q ss_pred hhh-------------------------hhHHHHHHHHHHHHHHHHHHH
Q 016442 350 ELV-------------------------GSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 350 ~~~-------------------------g~~~~~~~~~~~~~~~~~~~~ 373 (389)
... .+++..|...+++.++..+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 137777877776655544443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-10 Score=105.99 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=136.0
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHH
Q 016442 187 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTR 266 (389)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 266 (389)
..+|||.+..++....+.+.+......-.+-++.+ ..-|+...+.+.....+..++.++++|.+.||+.|||.
T Consensus 5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrri------ 77 (524)
T PF05977_consen 5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRI------ 77 (524)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH------
Confidence 45789999999999999999888887777777766 45688889999999899999999999999999999932
Q ss_pred HHHHHHHhhH---HHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHh
Q 016442 267 KILQSIGFIA---PGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 267 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~ 342 (389)
++..-.... ..+.++......+.+.++...++......+..|..++.+.++.| ++...++++.+...++...+||
T Consensus 78 -li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGP 156 (524)
T PF05977_consen 78 -LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGP 156 (524)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccc
Confidence 222111111 11111222222344555555555556666777888888988888 6889999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 343 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 343 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.++|.+....| ....|.+-++..++.+......+
T Consensus 157 algG~Lva~~G-~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 157 ALGGILVAFFG-AAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999988 77888888877776665544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-08 Score=88.80 Aligned_cols=243 Identities=11% Similarity=-0.027 Sum_probs=150.6
Q ss_pred cCcchhHHHHHHHHHh-hhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcc---c-----------------------
Q 016442 3 GADRFPSSFLWGYLVS-PIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAAD---T----------------------- 55 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~-~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~---~----------------------- 55 (389)
.+.++-+...+..++. .++.+++++|++|++++-.....+.....++++... +
T Consensus 44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i 123 (472)
T TIGR00769 44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFI 123 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHH
Confidence 4556666666665555 888999999999999988877777776666554410 1
Q ss_pred ---chHHHHHHHHHhhhhhccchh-hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-------c-Ccc
Q 016442 56 ---SLLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------A-GIF 123 (389)
Q Consensus 56 ---~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~-~w~ 123 (389)
+.|..-+..+...+-...... .-....+|.++.+|-.|..++...+.++|..+++.+..++.+. . .|.
T Consensus 124 ~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~ 203 (472)
T TIGR00769 124 AILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWH 203 (472)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHH
Confidence 133333444455554444444 6778999999999999999999999999999999998887631 1 242
Q ss_pred ----hhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHH
Q 016442 124 ----GPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIV 199 (389)
Q Consensus 124 ----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (389)
..+.+.++...+......++.++. ..+++..+.+. ..++++++....+.++.++|+|.++.+.+
T Consensus 204 ~~~~~l~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-----------~~~k~k~k~~~~es~k~i~~S~yL~~ia~ 271 (472)
T TIGR00769 204 VSLKNLMVIVICSGLAIILLYWWVNRNV-LTDPRSYNPAL-----------KEKKVKPKMSTMESLKFLVSSPYILDLAL 271 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccccchhh-----------ccccCCCCCCHHHHHHHHHhCHHHHHHHH
Confidence 233333433344333333332222 11111101100 00112224445678889999999988888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhccccchh----hhhhhHHHHHHHHHHHHHHHHHHHHHHc
Q 016442 200 ANAMHSWGFFVILSWMPIYFNFVYHIDLRQA----SWFSAVPWSVMAFTGYLGGLLSDMLIQR 258 (389)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 258 (389)
...+++.+.+....-.-...++.+. |+.+. |.+....++..++..++.+++.+|+|-+
T Consensus 272 ~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 272 LVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 8888877776666544455555432 33332 3334444555555666668888888877
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-11 Score=111.86 Aligned_cols=142 Identities=20% Similarity=0.065 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccc-hH-HHHHHHHHhhhhhcc-chhhhHHHHh
Q 016442 7 FPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS-LL-ALLAMRAVVGLAEGV-ALPAMNNMVA 83 (389)
Q Consensus 7 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~~~r~l~G~~~~~-~~~~~~~~i~ 83 (389)
......+...++.++.|+++||+|||++++.+..+.+++.+++.....++ .+ .....-++.+.+.+. ..|....+++
T Consensus 311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (479)
T PRK10077 311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 390 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence 34456677788999999999999999999999999988887765431112 11 223334444444443 3467789999
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhH------hhcccCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPI------LMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~------l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
|.+|+++|++++|+.+....+|..+++.+.+. +.+..+|++.|++.++..++..+..+++.||++
T Consensus 391 e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred hhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999888665544 345788999999988887777776666666544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-10 Score=103.99 Aligned_cols=142 Identities=13% Similarity=0.025 Sum_probs=110.3
Q ss_pred cCcchhH-HHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHh---hhhcccchHHHHHHHHHhhhhhccchhhh
Q 016442 3 GADRFPS-SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 3 ~~g~~~s-~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
+.|+... ...++..++.+++|+++||+|+|+.+.++..+.+++.+.. ... .++.+.+...-+++.+..+...+..
T Consensus 259 ~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~~l~~~~~g~~~~~~ 337 (491)
T PRK11010 259 EVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAVFFENLCGGMGTAAF 337 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566653 4557889999999999999999988877666555544332 222 1455555556667666666666777
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhcc
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS 145 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 145 (389)
.++..+..+++.+++..++.+...++|..+++.+.|.+.+..||+..|.+.++.+++..+...+.++
T Consensus 338 ~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 338 VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999988888887666666543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=99.97 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI 272 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 272 (389)
.+..+.+..+...+.........|.+ ++.+|.|+.+.++..+...++..++.++.|++.||+|+| ..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r---------~~l~~ 96 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIIT 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHH
Confidence 34555666666677777788888887 666899999999999999999999999999999999999 33344
Q ss_pred HhhHHHHHHHHH---hhccchhhHHHHHH-HHHhhhhccccccchhhhccccc-chhHHHHHHHHHhhhhhhHHhHHHHH
Q 016442 273 GFIAPGIALIGL---TAAKSPVMASAWLT-LAIGMKSFSHSGFLVNLQEIAPQ-YSGVLHGISNTAGTFAAILGTVGAGF 347 (389)
Q Consensus 273 ~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~g~~~~~~~~g~ 347 (389)
+.....+..... ...++........+ .+.+.+ ...+....+..+..|+ ++...++..+....+|..++|.+.+.
T Consensus 97 g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g-~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332 22344444333333 333333 3444445555677774 55567999999999999999998876
Q ss_pred HH
Q 016442 348 FV 349 (389)
Q Consensus 348 l~ 349 (389)
+.
T Consensus 176 l~ 177 (438)
T PRK10133 176 LI 177 (438)
T ss_pred HH
Confidence 54
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-10 Score=101.13 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=101.1
Q ss_pred HHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc
Q 016442 210 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS 289 (389)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (389)
.....+|.+.++ +|+++.+.++..+...++..++.++.|++.||+++|+ ....+........... ..++
T Consensus 18 ~~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~---------~~~~~~~~~~~~~~~~-~~~~ 86 (355)
T TIGR00896 18 SVGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER---------SVAAGLLLIAAGILIR-SAPG 86 (355)
T ss_pred cCcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH---------HHHHHHHHHHHHHHHH-Hhcc
Confidence 345667776665 8999999999999999999999999999999999982 2222332332322222 2233
Q ss_pred hhhHHHH-HHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh-HHHHHHHHHHHHH
Q 016442 290 PVMASAW-LTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS-FQGFLLLTSLLYF 367 (389)
Q Consensus 290 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~ 367 (389)
.+..+.. ++.+.+.. ...+.......+..|++|+++.|..+....+|..+++.+.+.+.+..+. ++..|...++..+
T Consensus 87 ~~~l~~~~~~~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 87 TALLFAGTALIGVGIA-IINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHHHHHH-HHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3333322 22333332 2333445566777788999999999999999999999999999887543 6667666555444
Q ss_pred HH
Q 016442 368 LS 369 (389)
Q Consensus 368 ~~ 369 (389)
+.
T Consensus 166 ~~ 167 (355)
T TIGR00896 166 LA 167 (355)
T ss_pred HH
Confidence 43
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-11 Score=108.23 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=103.9
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHH--HHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT--FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+.+...+...++..++.++.|+++||+|||+.+.....+..+.. ....+...++.+.+....++.|++.+...+...+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 335 (394)
T TIGR00883 256 SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGS 335 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45667778888999999999999999999998776555444433 1222221256777778889999998888999999
Q ss_pred HHhcccCcCchhhHHHH-HHhhhhhhhhhhhhhhhHhhcccC-cchhHHHHhhHHH
Q 016442 81 MVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGF 134 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~-w~~~f~~~~~~~~ 134 (389)
++.|.+|+++|++++++ .+....+|..++|.+++.+.++.| |+..++......+
T Consensus 336 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 99999999999999998 456677899999999999999888 8887776665443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=98.99 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHcCCchhhHHHHHHHH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-----IQRGTSVTLTRKILQSI 272 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~ 272 (389)
...++.+.........-+|.|+++ .|+|.++.|.+...... .+..++.|+++||+ ||| | ..+..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r-------r-~~l~~ 73 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR-------R-GWLLL 73 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc-------h-hHHHH
Confidence 445666777777788999999999 59999999998655444 57889999999999 665 2 22233
Q ss_pred HhhHHHHHHHHHhhc---cchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 273 GFIAPGIALIGLTAA---KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
+....++........ ++.+......++.........+...++..|..| |+|+++.++......+|..+++.+.+.+
T Consensus 74 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 74 TQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333222222222 222323333233334444555666777777777 6799999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 349 VELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 349 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
.+...+++..|++.++..++..+.....++
T Consensus 154 ~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e 183 (402)
T PRK11902 154 ADRVLGWGNTYLLMAGLMLAGALTTLWAPE 183 (402)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 986423888988877776665554444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-09 Score=94.70 Aligned_cols=323 Identities=13% Similarity=0.061 Sum_probs=176.2
Q ss_pred HHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhh------hhccc----c---hHHHHHHHHHhhhhhc-cchhhh
Q 016442 13 WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP------WAADT----S---LLALLAMRAVVGLAEG-VALPAM 78 (389)
Q Consensus 13 ~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~------~~~~~----~---~~~l~~~r~l~G~~~~-~~~~~~ 78 (389)
+..+++++..|.+.||..|++++..+.+.--++..+.+ +...+ + ...+++.-.+.|.-.- ......
T Consensus 49 ~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~ 128 (432)
T PF06963_consen 49 LSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANT 128 (432)
T ss_pred HHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45667778889999999999998887666444333322 11111 1 1222222223332211 112222
Q ss_pred HHHHhccc------CcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhc----cCCC
Q 016442 79 NNMVARWF------PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSAT----SSTP 148 (389)
Q Consensus 79 ~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~----~~~~ 148 (389)
.+.-.||. +++++.+.++...-.--...+++|.+.|.+.+..+.+....+.+...++...+=+++. +..|
T Consensus 129 iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P 208 (432)
T PF06963_consen 129 IAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVP 208 (432)
T ss_pred heeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 33344553 3456777888888888889999999999999988888887777777766554433322 2222
Q ss_pred CCCCcCcHHHHHHHHHhcCCccccCCC-------CCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 016442 149 DRHPQISKYELEYILREKQKPLLMGNK-------HKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF 221 (389)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (389)
+-..+.++++.+...+..+.....++. +.-++...+++..+++|.+. ..++..+.++..-++......|+..
T Consensus 209 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfl-as~alalLY~TVLsf~~lmt~yl~~ 287 (432)
T PF06963_consen 209 ALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFL-ASFALALLYFTVLSFGGLMTAYLKS 287 (432)
T ss_pred HhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHH-HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 211111111110000000000000000 00011123455566666554 4444445555555667778889988
Q ss_pred HhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc--hhhHHHHHHH
Q 016442 222 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS--PVMASAWLTL 299 (389)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 299 (389)
. |+++...|..-+...+.++.+.++..++.+|+|..+.-.. -...-..+...+...+....+ .......++.
T Consensus 288 ~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~-----~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~ 361 (432)
T PF06963_consen 288 Q-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLW-----SLWWQWVCLALCVVSFWAPGSPFSSISAYLLLG 361 (432)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH-----HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Confidence 5 9999999999999999999999999999999997632211 111111122222222222221 1222222222
Q ss_pred HHhhhh----ccccccchhhhccc-ccchhHHHHHHHHHhhhhhhHHh
Q 016442 300 AIGMKS----FSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 300 ~~~~~~----~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~ 342 (389)
+....= .+-.....+++|.. +++||+..|+-+...++...+.-
T Consensus 362 gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 362 GIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 222221 11122334445544 47999999999999988776554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=90.53 Aligned_cols=322 Identities=11% Similarity=0.077 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhccc
Q 016442 7 FPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWF 86 (389)
Q Consensus 7 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 86 (389)
+.-+-.+...+..+.+.++.+|...+.=......++.++.++.+++ +|.+.=+++-.+.+++.|........+.. .+
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 4444556677777788889999886665666777888899999998 99999999999999999988888888755 55
Q ss_pred CcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCc--chhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHH
Q 016442 87 PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI--FGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILR 164 (389)
Q Consensus 87 ~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (389)
++ ...+-++.+.+.+.++|+..-..+.+ .++ |..++....+.++..+..++..|+++.+.+..+.++.+...+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~ 215 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAED 215 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcccc
Confidence 43 35788888888888888887766655 554 777888777776666666666655443322111111111001
Q ss_pred hcCCccccCCCCCCCCCchhHHHhhc-chhHHHHHHHHHHHHHHHHHHH-HhhhHHHH-HHhccccchhhhhhhHHHHHH
Q 016442 165 EKQKPLLMGNKHKPATVIPPFRRLLS-KMPTWSIIVANAMHSWGFFVIL-SWMPIYFN-FVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+.... +..+.+.+...+.++++-++ -|......+-.+..++..+.++ ...|...- ....-...+.-++...+.++.
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GV 294 (402)
T PF02487_consen 216 DLLES-ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGV 294 (402)
T ss_pred ccccc-ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHH
Confidence 00000 00011111112222222221 1222223333333344444333 22222221 111112234455666667666
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH---HHHhhccchhhHHHHHHH-HHhhhhccccccchhhhc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL---IGLTAAKSPVMASAWLTL-AIGMKSFSHSGFLVNLQE 317 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 317 (389)
.+++--...+ |+ | +.++..+.-......+ ....+.++.+..+..++. |...+..+......+..|
T Consensus 295 FISRSS~~~~--ri--r-------~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~ 363 (402)
T PF02487_consen 295 FISRSSLPFF--RI--R-------RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEE 363 (402)
T ss_pred hhhhcceeee--eh--h-------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 6665433222 22 1 1121111111111111 111222344444433333 333334444455566667
Q ss_pred ccccchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 318 IAPQYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 318 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
.++++|-.++|.......+|..++..+.=++
T Consensus 364 ~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 364 VPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7779999999999888888887776655433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-09 Score=92.27 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=104.6
Q ss_pred hhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh--hccchhh
Q 016442 215 MPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--AAKSPVM 292 (389)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 292 (389)
+...+++++|+|+.|.+++.+...+.+.+.+++.|.+.||+|.| .......+...+-.+... ..+....
T Consensus 36 l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR---------~~~~~s~~l~~IP~~~~~~a~~~~~~~ 106 (417)
T COG2223 36 LGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR---------KWTILSMLLLLIPCLGLAFAVTYPSTW 106 (417)
T ss_pred HHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch---------HHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 33445566999999999999999999999999999999999999 333333333333333322 2222212
Q ss_pred HHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh--HHHHHHHHHHHHHHH
Q 016442 293 ASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS--FQGFLLLTSLLYFLS 369 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~ 369 (389)
.+...-+..+..+.........+++.+| |++|.+.|+.. .+|+|..+...+.+.+....|. ++....+.....++.
T Consensus 107 ~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 107 QLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2233333334444445555666777776 79999999998 9999999999999999988873 566656556666665
Q ss_pred HHHHHHhc
Q 016442 370 ALFYIIFS 377 (389)
Q Consensus 370 ~~~~~~~~ 377 (389)
.+..++..
T Consensus 186 ~v~~~~~~ 193 (417)
T COG2223 186 AVLAWLGM 193 (417)
T ss_pred HHHHHHHh
Confidence 55555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-09 Score=110.88 Aligned_cols=185 Identities=14% Similarity=0.001 Sum_probs=114.7
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHhccc-cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 016442 187 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYF----NFVYHID-LRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTS 261 (389)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 261 (389)
.++++++++.++...++..++.+.....++.+. .+..+.+ ....++..+...+...+.+++.|+++||++||+..
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 567788887777777776665443332222222 1111111 13456677778888899999999999999998211
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhH
Q 016442 262 VTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAIL 340 (389)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~ 340 (389)
. .+................ .++.+.++...++.....++..+...+++.+..| +++++++|+.++..++|..+
T Consensus 86 ~-----~~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i 159 (1140)
T PRK06814 86 K-----ILKFAEIGIAALAIYGFH-LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL 159 (1140)
T ss_pred H-----HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH
Confidence 0 111122222222222222 2344444444444444455566677777777766 79999999999999999999
Q ss_pred HhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 341 GTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 341 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
||.+.|++.+..+ +...|....+..+++.++....++
T Consensus 160 gp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1140)
T PRK06814 160 GTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPK 196 (1140)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999876 777775444444444444444443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-09 Score=94.27 Aligned_cols=157 Identities=12% Similarity=0.052 Sum_probs=108.8
Q ss_pred HHHhhhHHHHHHhccccch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccc
Q 016442 211 ILSWMPIYFNFVYHIDLRQ-ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKS 289 (389)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (389)
...+...++.+++|+++++ .|.+......+..+..+++|++.||+|.| .++..+.+.-++........++
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666679999999 99999999999999999999999999999 4445555555555544444444
Q ss_pred hhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh--hHHHHHHHHHHH
Q 016442 290 PVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG--SFQGFLLLTSLL 365 (389)
Q Consensus 290 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~ 365 (389)
.....+. ++++.+-+... ....++....| ++|+++.|+.+....+|.++++++.+.+ ...| +|....++....
T Consensus 115 l~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s 191 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHH
Confidence 4333333 34444444443 55556666555 8999999999999999999999999994 4444 233444445555
Q ss_pred HHHHHHHHHHhccC
Q 016442 366 YFLSALFYIIFSTG 379 (389)
Q Consensus 366 ~~~~~~~~~~~~~~ 379 (389)
..++.+..+++++.
T Consensus 192 ~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 192 MTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHhCCCC
Confidence 55566666666543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-10 Score=103.06 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhcCCe--ehhHHHHHHHHHHHHHhhh--------hcccchHHHHHHHHHhhhhhccch
Q 016442 6 RFPSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTPW--------AADTSLLALLAMRAVVGLAEGVAL 75 (389)
Q Consensus 6 ~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~r~l~G~~~~~~~ 75 (389)
.+.-+..+...++++++|++.||+|.| +++..++..+.+..+...+ . ++.+.+.+.-++.|+..|..+
T Consensus 321 ~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~--~~~~~f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 321 VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL--KSPWEFWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc--ccHHHHHHHHHHHHHHhhhHH
Confidence 344556678889999999999999999 8988888888665555444 4 788899999999999999999
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC-cchhHHHHhhHHHHHHHHHHHh
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
+.+.++.+|..|+++.+..+|++....-....+||.+.+.+.+..| -|+.+....++.++..++..+.
T Consensus 399 s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 399 SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998876 8888888888777766666554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=96.82 Aligned_cols=175 Identities=11% Similarity=0.100 Sum_probs=112.2
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHH
Q 016442 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI 268 (389)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 268 (389)
.||+++|......+.+.+.......+.|.+++++.|+|+++.|.+.+...+..++.+++.|.++||.+.|| ..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK-------~L 76 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKK-------HL 76 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCS-------HH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhH-------HH
Confidence 46788999999999999999999999999999888999999999999999999999999999999999884 23
Q ss_pred HHHHHhhH--HHHHHHHH--hh-ccchhhHHHHHHHHHhhhhcccc----ccchhhhcccccchhHHHHHHHHHhhhhhh
Q 016442 269 LQSIGFIA--PGIALIGL--TA-AKSPVMASAWLTLAIGMKSFSHS----GFLVNLQEIAPQYSGVLHGISNTAGTFAAI 339 (389)
Q Consensus 269 ~~~~~~~~--~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 339 (389)
+..+..+. .+..+... +. ..+. ....+++....+.... ...++.++.. ++.+.-.|=..+.+++|.+
T Consensus 77 l~~i~~l~~l~~pff~~v~~pll~~n~---~lg~iig~i~l~~~f~~~~~~~Ea~~er~s-r~~~feYG~~R~wGSig~a 152 (412)
T PF01306_consen 77 LWFIAILLLLFGPFFIYVFGPLLQSNF---WLGAIIGGIYLGLVFNAGVPLSEAYAERVS-RRNGFEYGRARMWGSIGFA 152 (412)
T ss_dssp HHHHHHHHHTCHHHHHHTHHHHHHTT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH-HHHSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccchHHHHHHHHHH-HHhcCCcchHHHHhhHHHH
Confidence 32322221 12222111 11 1111 1222222222222222 2223333222 4455667778889999999
Q ss_pred HHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 340 LGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 340 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+++.+.|.+.+.. ....|++.....++..++.+..
T Consensus 153 i~s~~~G~L~~i~--p~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 153 IASLLAGILFNIN--PNIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhheeeeeC--ccHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999863 5667776655544444443333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-10 Score=84.46 Aligned_cols=133 Identities=15% Similarity=0.153 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccch
Q 016442 234 SAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLV 313 (389)
Q Consensus 234 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (389)
.+...++..++.+..+++.||++|| .....+..............++.+......++.....+...+....
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 74 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRK---------PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA 74 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchh---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4456778888999999999999988 2223333333333333333344433333333333333344455666
Q ss_pred hhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 314 NLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 314 ~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+..|..| ++|+++.++.+....++..++|.+.+.+.+..+ +...+...+...+++.+.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhc
Confidence 6777776 789999999999999999999999999998876 7777777776666665554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.6e-10 Score=102.52 Aligned_cols=145 Identities=11% Similarity=0.087 Sum_probs=102.3
Q ss_pred HhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH--hhccchhhHHHHHHH
Q 016442 222 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--TAAKSPVMASAWLTL 299 (389)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 299 (389)
+++++..+.|.+.+...++..+++++.|++.||+|+|+ .+..+.+..++..... .........+..-++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~---------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 140 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW---------SIGIGMFLSSVISIVIPWAAGGGIALVVFCRVI 140 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch---------hhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 46889999999999999999999999999999999993 2233333322222222 222223333333333
Q ss_pred HHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 300 AIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV-GSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+...+...+....+..+..| ++|+++.|+.+....+|..++|.+.+.+.+.. | +...|.+.++..++..+.++..
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHH
Confidence 333334455566677777777 79999999999999999999999999999884 6 8888888777766655554444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=95.12 Aligned_cols=182 Identities=12% Similarity=0.187 Sum_probs=136.2
Q ss_pred Hhhcch-hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc----cccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HcCC
Q 016442 187 RLLSKM-PTWSIIVANAMHSWGFFVILSWMPIYFNFVYH----IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLI-QRGT 260 (389)
Q Consensus 187 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~ 260 (389)
..+++| .++.+...-+.--+++++....+..|+..+.+ +|++++.-+.+.+..-.-+..+++||++||+- +|
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~-- 92 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR-- 92 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh--
Confidence 345554 56667777788889999999999999998888 99999988888888888888999999999964 44
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHhhcc--c-hhhHHHHHHHHHhhhhccccccchhhhcccc--c-chhHHHHHHHHHh
Q 016442 261 SVTLTRKILQSIGFIAPGIALIGLTAAK--S-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--Q-YSGVLHGISNTAG 334 (389)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~g~~~~~~ 334 (389)
..+.++.+...+..+.+...+ . ....+...++..+ .+..=+.......+..| + +|-.+.++..+..
T Consensus 93 -------~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG-~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~i 164 (498)
T COG3104 93 -------RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVG-TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGI 164 (498)
T ss_pred -------HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhc-cccccccHHHHHHHhcCCCCcccCCCccEEEEEe
Confidence 444555555666655555542 2 2333333444433 33444555566666654 2 5778889999999
Q ss_pred hhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 335 TFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 335 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
++|+.++|.+.+++.++.| ++..|..+++-+..+.+.+.+.+|.
T Consensus 165 NiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 165 NIGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred ehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999998 9999999999999999888877643
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=105.43 Aligned_cols=131 Identities=20% Similarity=0.145 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccch--HHHHHHHHHhhhhhccchhhhHHHHhccc
Q 016442 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSL--LALLAMRAVVGLAEGVALPAMNNMVARWF 86 (389)
Q Consensus 9 s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 86 (389)
....+....+.++.+++.||+|||+.+..+..+.+++.++..+. ++. +...+.-++.+++.+...+....+.+|.+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV--PVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34456667788889999999999999999999999888887776 443 55556667777777777888899999999
Q ss_pred CcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 87 PQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 87 ~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
|++.|+.++|+.+....+|.+++|.+.+ + +..++..++.+.+...++..+...++
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999988 4 44567778888887777766665554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=105.05 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=101.9
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
.+++.+...++..++.+++++++||+|+|+++..+..+.+++.+...+.. ++.+.+.+..++.|++.+...+...++++
T Consensus 259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (437)
T TIGR00792 259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFVTGLVWALVA 337 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777888999999999999999999999999988888877766641 45677788888999999998999999999
Q ss_pred cccC-------cCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcc
Q 016442 84 RWFP-------QTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIF 123 (389)
Q Consensus 84 ~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~ 123 (389)
|..| ++++|.++|+.+....+|..+++.+.+.+.+..||.
T Consensus 338 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 338 DTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9875 456799999999999999999999999998877764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-10 Score=97.00 Aligned_cols=147 Identities=17% Similarity=0.141 Sum_probs=116.2
Q ss_pred hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHh
Q 016442 223 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG 302 (389)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
.+-+..+.|++++...+.+++.+.+.|.+.||+|+| ..+.+++..+......+...++....+..=.+-+.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~---------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK---------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGV 171 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc---------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence 344667899999999999999999999999999999 66677777777777777776666555444334333
Q ss_pred hhhccccccchhhhcccc-c-chhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 303 MKSFSHSGFLVNLQEIAP-Q-YSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~-~-~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
...+......++.++.+| + +|++++|+...+..+|-.+||+++|.++|..| +..+|.+.++++++-..+-++.-++
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCc
Confidence 444555555667777777 3 68999999999999999999999999999998 8999999998888877766655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.1e-08 Score=92.05 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHhhhhhhhhhhh-cCCeehhHHHHHHHHHHHHHhhhhccc------chHHHHHHHHHhhhhhccchhhhH
Q 016442 7 FPSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADT------SLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 7 ~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
+...+....-+.+.++|.++|+ +||++.+.++.++..++..+.++...+ .....+++-.+..+|.|+.-|...
T Consensus 28 i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vs 107 (654)
T TIGR00926 28 LFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVS 107 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCch
Confidence 3445555566778888999996 699999999999999999887765211 123466778888899999999999
Q ss_pred HHHhcccCcC---chhhHHHHHHhhhhhhhhhhhhhhhHhhcc-------cCcchhHHHHhhHHHHHHHHHHHhc
Q 016442 80 NMVARWFPQT---ERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------AGIFGPFVIFGLSGFLWVLVWLSAT 144 (389)
Q Consensus 80 ~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~ 144 (389)
+...|.++++ +|-..+.++..+.++|+.+++.+.+++.++ .+|...|.+.++..++..+......
T Consensus 108 af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 108 AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999754 367788999999999999999999888643 3699999998888877766655443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=102.03 Aligned_cols=174 Identities=13% Similarity=0.036 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
...+.+...+...-.+.+-...+.. ++.++.++...|++.....+..++.+++.|++.||+.|+ .++.++
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~---------~v~~vG 104 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK---------RVIAVG 104 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc---------eEEeeH
Confidence 3344555555555555554444433 344899999999999999999999999999999999999 333444
Q ss_pred hhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh
Q 016442 274 FIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV 352 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 352 (389)
..+-..+.+.....+..|.+..+=.+.+..-....+..+..+++.+| ++|+++.++.+....+|..+|-...+.+.+..
T Consensus 105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 44444444444444445555544444444445666777888889888 69999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 353 GSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
+.|++.|...+++.++..++..++.
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhc
Confidence 8899999999988877776655553
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-09 Score=101.28 Aligned_cols=162 Identities=11% Similarity=0.064 Sum_probs=105.6
Q ss_pred HHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc
Q 016442 208 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA 287 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (389)
..++....-.-++++++++..+.|++.+...++..++.++.+++.||.+|++.. .++.++.++..+.....
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i---------~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI---------GIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE---------EecHHHHHHHHHHHhCh
Confidence 334433333445566999999999999999999999999999999999988433 22222222222222111
Q ss_pred c-------------------------------------------------c--hhhHHHHHHHHHhhhhccccccchhhh
Q 016442 288 K-------------------------------------------------S--PVMASAWLTLAIGMKSFSHSGFLVNLQ 316 (389)
Q Consensus 288 ~-------------------------------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (389)
+ + ...++..-++.+...+...+....++.
T Consensus 119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID 198 (633)
T ss_pred HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence 0 0 111222222222223344455667888
Q ss_pred cccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh---------------------hhHHHHHHHHHHHHHHHHHHHH
Q 016442 317 EIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV---------------------GSFQGFLLLTSLLYFLSALFYI 374 (389)
Q Consensus 317 ~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~ 374 (389)
|..| ++|+...|+.+....+|..+|+.+.+++.+.+ |.|...|++.+++.++..+.++
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 79999999999999999999999999988643 2255667777776666555555
Q ss_pred Hhcc
Q 016442 375 IFST 378 (389)
Q Consensus 375 ~~~~ 378 (389)
.+++
T Consensus 279 ~~p~ 282 (633)
T TIGR00805 279 FFPK 282 (633)
T ss_pred hCcc
Confidence 5543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.8e-09 Score=106.95 Aligned_cols=158 Identities=12% Similarity=-0.005 Sum_probs=105.0
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhh
Q 016442 187 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDL--RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTL 264 (389)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 264 (389)
..++++.++.+++..++..+........+..++...++.+. ...++..+...++..++.++.|+++||+|||+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~----- 78 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNR----- 78 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHH-----
Confidence 45677788877777777776666555555555554455543 33577778888889999999999999999992
Q ss_pred HHHHHHHHHhhHHHHH-HHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHh
Q 016442 265 TRKILQSIGFIAPGIA-LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~ 342 (389)
.++....+...... .......++.+..++..++.+...+...+....++.+..| ++|++++|+......+|..++|
T Consensus 79 --~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~ 156 (1146)
T PRK08633 79 --VIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGT 156 (1146)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence 22222111111111 1111122333444444344444445566666777888777 7999999999999999999999
Q ss_pred HHHHHHHhh
Q 016442 343 VGAGFFVEL 351 (389)
Q Consensus 343 ~~~g~l~~~ 351 (389)
.+.+++.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 999999876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-08 Score=93.90 Aligned_cols=177 Identities=13% Similarity=0.072 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHH----HHHHcCCchhhHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD----MLIQRGTSVTLTRKI 268 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~ 268 (389)
++..+....+...+++.....+.+.|+++ +|.++...+.+.....+...+..++.|+++| |+|||+ .
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr--------p 75 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR--------P 75 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH--------H
Confidence 34455566666677777778888888876 8999999999999999999999999999999 488882 2
Q ss_pred HHHHHhhHHHHHHHHHhhccch-----------------hhHHHHHHHHHhhhhccccccchhhhcccc-cch--hHHHH
Q 016442 269 LQSIGFIAPGIALIGLTAAKSP-----------------VMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYS--GVLHG 328 (389)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--g~~~g 328 (389)
.+..+.......+..++...+. +..+..+.+.-.......+...++..|..| ++| +.+.+
T Consensus 76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~ 155 (477)
T TIGR01301 76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA 155 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence 2333333343343333332211 111111222222333344455677788777 443 68999
Q ss_pred HHHHHhhhhhhHHhHHHHHH--Hhhh------------hhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 329 ISNTAGTFAAILGTVGAGFF--VELV------------GSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 329 ~~~~~~~~g~~~~~~~~g~l--~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
+.+....+|+.+++.+.+.. .+.. .++...|.+.+++.+++.+...+..+
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~ 219 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK 219 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 99999999999999998875 2221 14778888888877777766555433
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-08 Score=93.57 Aligned_cols=155 Identities=13% Similarity=0.140 Sum_probs=93.0
Q ss_pred HHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc
Q 016442 208 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA 287 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (389)
.+.+..+.|.. ++++|+|..+.+.+.+.. .......++.|++.||+|+| .+..++.+...+........
T Consensus 43 ~y~fsv~s~~L-~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R---------~vllig~ll~~iG~ll~ala 111 (591)
T PTZ00207 43 MYAFNLISGAM-QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPR---------PIFVLSMTVFCLGTLLFALT 111 (591)
T ss_pred HHHHHHHHHHH-HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHH
Confidence 34555555654 555899999999887663 33345667789999999999 44444444444444433332
Q ss_pred ------cchhhHHHH-HHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHH
Q 016442 288 ------KSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLL 360 (389)
Q Consensus 288 ------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 360 (389)
.+.+..... .+.+.+. +...+.......+.+|++||++.|+......+|+++.+.+...+.+. ++...|+
T Consensus 112 ~~~~i~~s~~~l~l~r~l~G~G~-~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 112 FQEVIEGSVVRLSVYNGLMTLGC-MLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred hcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 223322222 2223332 22233334455667899999999999999999998655555544432 2556666
Q ss_pred HHHHHHHHHHHHHHHh
Q 016442 361 LTSLLYFLSALFYIIF 376 (389)
Q Consensus 361 ~~~~~~~~~~~~~~~~ 376 (389)
+.++..++..++....
T Consensus 189 ~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 189 FLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666655554444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-08 Score=91.85 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhc---cccch---hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 016442 199 VANAMHSWGFFVILSWMPIYFNFVYH---IDLRQ---ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI 272 (389)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 272 (389)
+..++.......+....| ++.++++ .+..+ .+...+...++..+++++.|+++||+||| ..+..
T Consensus 29 ~~~~~~~~d~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr---------~~l~~ 98 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSL-YFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRK---------KSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---------HHHHH
Confidence 334444444555444444 4444453 34433 23344455566669999999999999999 33444
Q ss_pred HhhHHHHHHHHHhhccchh--------hHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHh
Q 016442 273 GFIAPGIALIGLTAAKSPV--------MASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~ 342 (389)
+....++........++.. ..... ++.+.+. +...+....+..|..| ++|+...++.......|..+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~-g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSV-GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhh-hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4444444444433323221 12222 2223332 3344555677777766 8999999998887778877777
Q ss_pred HHHHHHHh--------hhhhHHHHHHHHHHHHHHH
Q 016442 343 VGAGFFVE--------LVGSFQGFLLLTSLLYFLS 369 (389)
Q Consensus 343 ~~~g~l~~--------~~g~~~~~~~~~~~~~~~~ 369 (389)
.+...+.. ..| |+..|.+.++..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWG-WRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHH
Confidence 66555432 345 888888776665544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=92.38 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=95.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhh
Q 016442 226 DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKS 305 (389)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (389)
+....|.+-+.+.+...+.++..|.++||+||| .++.++++..++....+..+++. ..+...=+..+..-
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk---------pvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~Gi~k 135 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK---------PVLLACLIGVALSYLLWALSRNF-AAFVLARFLGGIFK 135 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcc
Confidence 456678888999999999999999999999999 67777777777777777776655 22222122333333
Q ss_pred ccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh---hhhhHHHHH
Q 016442 306 FSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE---LVGSFQGFL 359 (389)
Q Consensus 306 ~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~ 359 (389)
...+...+++.|+.+ |+|+.+++.+++..++|-++||.++|++.+ ..|++..++
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al 193 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL 193 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH
Confidence 444566778888877 899999999999999999999999999988 556554444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-08 Score=90.84 Aligned_cols=161 Identities=13% Similarity=0.100 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHh--ccccchhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHH
Q 016442 196 SIIVANAMHSWGFFVILSWMPIYFNFVY--HIDLRQASWFS-----AVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI 268 (389)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 268 (389)
...+..++...-...+....|.+..+++ +.++. .+... +...++..+++++.|++.||+||| .
T Consensus 26 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr---------~ 95 (438)
T PRK09952 26 GSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK---------R 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH---------H
Confidence 3344444444444444455555555544 55655 34432 233455668888999999999999 3
Q ss_pred HHHHHhhHHHHHHHHHhhccchh--------hHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhh
Q 016442 269 LQSIGFIAPGIALIGLTAAKSPV--------MASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAA 338 (389)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 338 (389)
.+..+....++........++.. ..+.. ++.+.+. +...+....+..|..| ++|+...+..+....+|.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~-g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAV-GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 44445555555554444444432 12222 2223333 3333444567778777 799999999988888888
Q ss_pred hHHhHHHHHHHh--------hhhhHHHHHHHHHHHHHH
Q 016442 339 ILGTVGAGFFVE--------LVGSFQGFLLLTSLLYFL 368 (389)
Q Consensus 339 ~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~~~ 368 (389)
.+++.+...+.. ..| |+..|.+.++..++
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~ 211 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHH
Confidence 888877776653 345 88888877665444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=91.91 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=100.6
Q ss_pred HHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHcCCchhhHHHHHHHHHhhHHHHHHHHH
Q 016442 210 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML-----IQRGTSVTLTRKILQSIGFIAPGIALIGL 284 (389)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (389)
......|.+++| .|+|.++.+..... .+...+ .++.|++.||+ ||| +.++..+.+..+......
T Consensus 6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr--------~~~l~~~~~~~~~~~~~l 74 (356)
T TIGR00901 6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRR--------RSWLVLTQVLLLSLLLIL 74 (356)
T ss_pred hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCcc--------HHHHHHHHHHHHHHHHHH
Confidence 345567778777 69999999998644 444444 88999999998 555 222233333333332222
Q ss_pred hhc---cchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh------
Q 016442 285 TAA---KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS------ 354 (389)
Q Consensus 285 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~------ 354 (389)
... ...+......++.........+...++..|..| |+|+.+.|+......+|..+++.+.+.+.+..|.
T Consensus 75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 222 122222222222333334444556677777776 8999999999999999999999999999887652
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 016442 355 -FQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~ 375 (389)
+...|.+.++..++..+..+.
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 778888887776665554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-08 Score=92.94 Aligned_cols=171 Identities=12% Similarity=0.020 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH----hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh
Q 016442 199 VANAMHSWGFFVILSWMPIYFNFV----YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF 274 (389)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 274 (389)
+..+....-........|.+-.+. .+.+..+.+++.+...++..++.++.|++.||+||| .....+.
T Consensus 23 ~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr---------~~~~~~~ 93 (502)
T TIGR00887 23 VGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK---------RVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH---------HHHHHHH
Confidence 333333343444444455443321 133455678888999999999999999999999999 3333333
Q ss_pred hHHHHHHHHHhhccc------hhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHH
Q 016442 275 IAPGIALIGLTAAKS------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGF 347 (389)
Q Consensus 275 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 347 (389)
+...+.........+ .......-++.+...+...+....+..|..| ++|+++.++.+....+|..+++.+...
T Consensus 94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222222221 2223333333333334444566778888887 899999999999999999999988876
Q ss_pred HHhhh----------------------hhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 348 FVELV----------------------GSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 348 l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
+.... .+|+..+.+.++..++..+....+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpE 226 (502)
T TIGR00887 174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPE 226 (502)
T ss_pred HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 54311 13778887766666655555444444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-08 Score=91.14 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhh-hHH-----HHHHHHHHHHHHHHHHHHHHcCCchhhHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFS-AVP-----WSVMAFTGYLGGLLSDMLIQRGTSVTLTRK 267 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 267 (389)
.....+..++...-...+....|...++ ++.++.+.+... +.. .+...++.++.|++.||+|||
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr--------- 86 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR--------- 86 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH---------
Confidence 3445666777777777777888876666 787776654332 221 222246788999999999999
Q ss_pred HHHHHHhhHHHHHHHHHhhccchhh--------HHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhh
Q 016442 268 ILQSIGFIAPGIALIGLTAAKSPVM--------ASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAA 338 (389)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 338 (389)
.....+..............++... .+..-++.+...+...+....+..|..| ++|++++++.+...+++.
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV 166 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence 3334444444444444444443321 1111122222222333444567778777 899999999999988888
Q ss_pred hHHhHHHHHHH--------hhhhhHHHHHHHHHH
Q 016442 339 ILGTVGAGFFV--------ELVGSFQGFLLLTSL 364 (389)
Q Consensus 339 ~~~~~~~g~l~--------~~~g~~~~~~~~~~~ 364 (389)
.+++.+.+.+. +..| |+..|++...
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~ 199 (434)
T PRK15075 167 VFAALLGYLLNQWLSPAQMAEWG-WRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHhCCHHHHhccc-hHHHHHHHHH
Confidence 88888777663 3455 7888876433
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=89.25 Aligned_cols=348 Identities=14% Similarity=0.090 Sum_probs=216.9
Q ss_pred HHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhH
Q 016442 15 YLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARA 94 (389)
Q Consensus 15 ~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 94 (389)
+.+.-.+.=.+.|..-.|++++.-.+.......+..+. ++.+.+=+.-+..|...+. ..+-++++-+..+|+++.++
T Consensus 55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g--~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrv 131 (433)
T KOG3810|consen 55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG--PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRV 131 (433)
T ss_pred HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc--CCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHH
Confidence 34444455568899999999998888888888888888 9999999999999998764 77888999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhHhhcccC--cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCcccc
Q 016442 95 VAIAMGGFTSGNAIGLVLSPILMSQAG--IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLM 172 (389)
Q Consensus 95 ~~~~~~~~~~G~~~g~~l~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (389)
.+.-.++.-.|...|..++..+..... +...-.+.-....+......++ |.+++..-..+++++ ....+.++.
T Consensus 132 t~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fL-P~v~rSl~f~~~~~~-~~v~~~e~~--- 206 (433)
T KOG3810|consen 132 TGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFL-PRVKRSLYFHRLEDK-ISVGDLEEM--- 206 (433)
T ss_pred HHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhC-CCCchhhhhhccccc-ceeccchhc---
Confidence 999999999999999999988876433 3333333333333333344444 443322111111110 000000000
Q ss_pred CCCCCCC--------CCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccch----hhhhhhHHHHH
Q 016442 173 GNKHKPA--------TVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQ----ASWFSAVPWSV 240 (389)
Q Consensus 173 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~ 240 (389)
..+.+.. ....++++..+||++....+-..+...+++...++....-++. . ++. .|..=++..+.
T Consensus 207 ~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~-~--~~~~~vyNG~veAv~tlL 283 (433)
T KOG3810|consen 207 NPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV-A--PNPANVYNGAVEAVSTLL 283 (433)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh-C--CCchhhhcCHHHHHHHHH
Confidence 0000000 1123455667889888877777778888888887777666653 2 222 23344455556
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhcccccc-chhhhccc
Q 016442 241 MAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF-LVNLQEIA 319 (389)
Q Consensus 241 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 319 (389)
++++.+..|.+.-.+.|. +..++..+....+..++......+.|......++.-.......+.. ..+..++.
T Consensus 284 Ga~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~ 356 (433)
T KOG3810|consen 284 GAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLS 356 (433)
T ss_pred HHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhh
Confidence 667777777776555555 3466667777777777777777777766666555544444444333 44455666
Q ss_pred ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh----------hHHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 016442 320 PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG----------SFQGFLLLTSLLYFLSALFYIIFSTGERVN 383 (389)
Q Consensus 320 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (389)
.|.-|-..|+...+.-+-..+-..+ +.|..| -|...|.+.+...+++........++++.+
T Consensus 357 ~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~~~ 427 (433)
T KOG3810|consen 357 SELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRRNKVP 427 (433)
T ss_pred hhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 6788888888776655444333332 344322 255667777877777766555554444444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=93.09 Aligned_cols=138 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
+.++.-...+..+++++++|++.||+|.|+++..+.++..+.++..-+. ..-..+.+.-.+.|...|..+..+.++.+
T Consensus 290 lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g~s~G~~qA~SRSy~~ 367 (438)
T COG2270 290 LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGLLVGTSLGGAQASSRSYLA 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3445556677788999999999999999999999999999999888777 67777888889999999999999999999
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC-cchhHHHHhhHHHHHHHHHHHh
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
+..|++|-++.+|+++...-.+..+||.+-+.+.+..| -|..+....++..+..+.....
T Consensus 368 ~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 368 RLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred HhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 99999999999999999999999999999999887654 6777776666555544444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-08 Score=90.30 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=110.1
Q ss_pred hcchhHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhh
Q 016442 189 LSKMPTWSIIVANAMHSWGF----FVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTL 264 (389)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 264 (389)
+++|+++..+....+..... ......++...++ .|- ..+..++.....+...+..++.|+++|.+|||
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr------ 108 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR------ 108 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcch------
Confidence 35666665554444433322 2223334444444 674 46677778888889999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHH-HHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHh
Q 016442 265 TRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTL-AIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~ 342 (389)
.....+.++..+..+.....++....+....+ +.+. +.. ......++|..| |.|..+.++.....-.....+|
T Consensus 109 ---~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga-G~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~ 183 (599)
T PF06609_consen 109 ---YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA-GVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISP 183 (599)
T ss_pred ---HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh-HHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccH
Confidence 66666666666666666666665555544433 3332 222 233445677777 7888877776655545555667
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 343 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 343 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
.+...+..+. +|++.|++..+...++++...++++
T Consensus 184 ~ia~~~~~~~-~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 184 LIAQLFAAHS-GWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred HHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHhC
Confidence 7766665544 4889988888877776655444433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-08 Score=88.30 Aligned_cols=174 Identities=11% Similarity=0.035 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhh--hhHHHHHHHHHHHHH-HHHHHHHHHcCCchhhHHHHHHH
Q 016442 195 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWF--SAVPWSVMAFTGYLG-GLLSDMLIQRGTSVTLTRKILQS 271 (389)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~d~~~~~~~~~~~~~~~~~~ 271 (389)
..+...++.+...+......+|.++++ .|.|.++.|.+ .........+.+++. ++..||.|||| .++..
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~-------~~i~~ 75 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR-------SWVLP 75 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch-------hHHHH
Confidence 345566777778888888999999998 59999999997 355677776666666 44688888772 23223
Q ss_pred HHhhHHH-HHHHH-Hhhccc-hhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHH
Q 016442 272 IGFIAPG-IALIG-LTAAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGF 347 (389)
Q Consensus 272 ~~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 347 (389)
....... ...+. ...... .............+.....+....+..|..+ +.++...+.......+|..+++...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~ 155 (390)
T TIGR02718 76 MQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLV 155 (390)
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 11111 111111 1122222222222222333333444444444 566777788877778899999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 348 FVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 348 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
+.++.| ++..|++.++..++..+..+..+
T Consensus 156 l~~~~g-w~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 156 LFGKFG-QRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988 89899988887766655544443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=94.01 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=94.7
Q ss_pred HHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccCcC--
Q 016442 12 LWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT-- 89 (389)
Q Consensus 12 ~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-- 89 (389)
.++..++.++++++.||+|+|+++.++..+..++.+...+...++++.+++..++.|+|.+...+...++.+|..|.+
T Consensus 274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~ 353 (448)
T PRK09848 274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY 353 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 556778899999999999999999999999888887777653346777778888999999999999999999998754
Q ss_pred -----chhhHHHHHHhhhhhhhhhhhhhhhHhhcccCc
Q 016442 90 -----ERARAVAIAMGGFTSGNAIGLVLSPILMSQAGI 122 (389)
Q Consensus 90 -----~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w 122 (389)
++|..+|..+....+|..+|+.+.+.+.+..|+
T Consensus 354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999988766655
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.7e-09 Score=95.89 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=127.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcC--CeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYG--GKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
.+.+.+.++..+...++.+..|+++|+.. ++.+..++.++.+++.+.++++ ++++.+...-.+.|+..|.......
T Consensus 333 ~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~~fG~~~g~~~~l~~ 410 (509)
T KOG2504|consen 333 NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSILFGFCVGSFSSLTP 410 (509)
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999988 4567788888888888889999 9999999999999999999888888
Q ss_pred HHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC-cchhHHHHhhHHHHHHHHHHHhc
Q 016442 80 NMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSAT 144 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~ 144 (389)
..+.|..+.++-..+.|+.....+++..+||++++.+.|..+ |...|+..++..++....++..+
T Consensus 411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 411 VILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 899999999999999999999999999999999999988877 99999999998888777766665
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=83.23 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=105.6
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-----ccchHHHHHHHHHhhhhhccchhh
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-----DTSLLALLAMRAVVGLAEGVALPA 77 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~ 77 (389)
|...+.++-.+|..+ +++.|.+.|++|++.++.+|.....+|..+...+. ..++|.+.+..++.|.+.+....+
T Consensus 38 ~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta 116 (250)
T PF06813_consen 38 QLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTA 116 (250)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhH
Confidence 455667777788776 58889999999999999999999999998876653 256788888888888888777777
Q ss_pred hHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhcc
Q 016442 78 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATS 145 (389)
Q Consensus 78 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 145 (389)
+.....+.+| ++||++.|+.-...+++..+-..+...+.+...-+........+.++..+...+.++
T Consensus 117 ~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 117 SLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 7777778886 689999999999999998888887777766533333333333334444444444433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=88.08 Aligned_cols=131 Identities=32% Similarity=0.538 Sum_probs=109.6
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccc--hHHHHHHHHHhhhhhccchhhhHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS--LLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
+.++..+.+.++..++.++.|.+.||+|||+.+..+......+.+...+. ++ .+.+++.|+.+|++.+...+...+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 117 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--PNVGLALLLILRLLQGLGGGGLLPVASA 117 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35788899999999999999999999999988888887766666677676 55 899999999999999999999999
Q ss_pred HHhcccCc-CchhhHHHHHHh-hhhhhhhhhhhhhhHhhcc--cCcchhHHHHhhHHHH
Q 016442 81 MVARWFPQ-TERARAVAIAMG-GFTSGNAIGLVLSPILMSQ--AGIFGPFVIFGLSGFL 135 (389)
Q Consensus 81 ~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~--~~w~~~f~~~~~~~~~ 135 (389)
++.|+.|+ ++|+...+.... ...+|..+++.+++.+... .+||+.|.........
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999987 689999999988 6888999999887777654 5799866666555544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-07 Score=78.04 Aligned_cols=164 Identities=13% Similarity=0.026 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH
Q 016442 205 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL 284 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (389)
+......+..+-..+++.++.+..+++.+......+..+.++..+++.+|+|.| .-+..++.+.++....+
T Consensus 25 ~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk---------~gi~lgL~l~avg~~lF 95 (422)
T COG0738 25 WGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK---------AGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH---------HHHHHHHHHHHHHHHHH
Confidence 333444555555566777999999999999999999999999999999999999 33344444544444444
Q ss_pred hh---ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhh---------
Q 016442 285 TA---AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL--------- 351 (389)
Q Consensus 285 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~--------- 351 (389)
.. ..+....+...++.....+..-.....++....+ +....-+.+...+..+|++++|.+.+.+.++
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 32 1222223322222222223344445556666655 6778889999999999999999999999883
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 352 ---------VGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 352 ---------~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
..+.+.+|...+...++..+.....+
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k 210 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSK 210 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 12456667766666655555444443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-09 Score=88.52 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=102.5
Q ss_pred HHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHH--HHHHHHHhhhhhccchhhhHHHHhcccCcCc
Q 016442 13 WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA--LLAMRAVVGLAEGVALPAMNNMVARWFPQTE 90 (389)
Q Consensus 13 ~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 90 (389)
+.-.-|.++.+++.||+|||+.+..+.+++++..+....+..+|... +..+|++. ++.+.+.+.|..|.+|.+-
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchhh
Confidence 44456778899999999999999999999999999887773334322 35556544 4456777899999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 91 RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 91 r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
|+...|.-+...-+|.++.|.++ +....+-..+..+.+...++..+...+++-|++
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence 99999999999999999999998 333445566777778888888888777766654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=84.27 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhh
Q 016442 196 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI 275 (389)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
++...++++.+....+..++|.|+++ .|+|..|+|.+.+...+..+++.++.|.++||.+++ ++.+ .+..+
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~-------~~~l-~~~~l 76 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA-------KRIL-ALLSL 76 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH-------HHHH-HHHHH
Confidence 45667777888888889999999999 599999999999999999999999999999998766 2233 33333
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHH
Q 016442 276 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVG 344 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 344 (389)
..++.+......++.+......++...+.....+...++..+..+ +++.-.|-....+++|-+++...
T Consensus 77 ~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~-~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 77 LSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG-DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc-cccCCCCcchhhhhHHHHHHHHH
Confidence 343334333444444444333333322222223333333333332 33444555566666666666544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-08 Score=86.27 Aligned_cols=347 Identities=15% Similarity=0.105 Sum_probs=175.0
Q ss_pred HHHHHhhhhhhhhhhh----cCCeeh-hHHHHHHHHHHHHHhhhhcccchH-----------------HHHHHHHHhhhh
Q 016442 13 WGYLVSPIAGGTLVDY----YGGKII-MAWGVALWSLATFLTPWAADTSLL-----------------ALLAMRAVVGLA 70 (389)
Q Consensus 13 ~~~~~~~~~~G~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~ 70 (389)
+...+.+|+.|..+|| |||||. +..+.....++.++..++ .++. .+++.--+.=++
T Consensus 78 i~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a--aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A 155 (498)
T KOG0637|consen 78 LSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA--ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVA 155 (498)
T ss_pred cccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH--hhhhHHhcCCcccccchHHHHHHHHHhHHHHhh
Confidence 4456778899999995 888765 455556666677777766 3322 233334444455
Q ss_pred hccchhhhHHHHhcccCcCchhh-HHHHHHhhhhhhhhhhhhhhhHhhcccCcchh--HHHHhhHHHHHHHH-------H
Q 016442 71 EGVALPAMNNMVARWFPQTERAR-AVAIAMGGFTSGNAIGLVLSPILMSQAGIFGP--FVIFGLSGFLWVLV-------W 140 (389)
Q Consensus 71 ~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~--f~~~~~~~~~~~~~-------~ 140 (389)
.-.....+.+++.|...++++.+ +++.+..+.++|..+|..++++. +|+-. |...-..-+.+..+ .
T Consensus 156 ~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v 231 (498)
T KOG0637|consen 156 NNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEV 231 (498)
T ss_pred hhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 55778888999999998777666 99999999999999999988743 44422 22221111111111 1
Q ss_pred HHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCc-hhHHHhh-cchhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 016442 141 LSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVI-PPFRRLL-SKMPTWSIIVANAMHSWGFFVILSWMPIY 218 (389)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (389)
.+...++.+......+++.. .+....+.+..+.... +.+..+. ..|..+.+++...+...+.+.+..+...+
T Consensus 232 ~L~~i~~~~~l~~~~~~~~s------~~~~~~~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDf 305 (498)
T KOG0637|consen 232 TLLLIETSESLWYPQEKPLS------PKGTTARSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDF 305 (498)
T ss_pred hhhheecccccccccccCCC------CCcccccccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111000000000000 0000000000000000 1111122 23578888999999999988888888877
Q ss_pred HHH-Hhccccchh----------------hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHH
Q 016442 219 FNF-VYHIDLRQA----------------SWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIAL 281 (389)
Q Consensus 219 ~~~-~~g~~~~~~----------------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (389)
+-+ .++-++... .+=+.++.+...+.+....++.||+|-|+.............++.......
T Consensus 306 mG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~ 385 (498)
T KOG0637|consen 306 MGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNT 385 (498)
T ss_pred cchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhH
Confidence 754 344333211 122345556667777888889999986544332221111111111111100
Q ss_pred HHHhhc---------cchhhHHHHHHHHHhhh---hccccccchhhh-cccc--cchhHHHHHHHHHhhhhhhHHhHHHH
Q 016442 282 IGLTAA---------KSPVMASAWLTLAIGMK---SFSHSGFLVNLQ-EIAP--QYSGVLHGISNTAGTFAAILGTVGAG 346 (389)
Q Consensus 282 ~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g 346 (389)
...... +.......+....--.. .+.....+...+ +..+ .-+|...|+.|....+.+++.....|
T Consensus 386 ~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~G 465 (498)
T KOG0637|consen 386 YVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLG 465 (498)
T ss_pred HHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeecccc
Confidence 000000 00000000110000000 111122222222 1222 34588888899999999999999999
Q ss_pred HHHhhhhhHHH-HHHHHHHHHHHHHH
Q 016442 347 FFVELVGSFQG-FLLLTSLLYFLSAL 371 (389)
Q Consensus 347 ~l~~~~g~~~~-~~~~~~~~~~~~~~ 371 (389)
.+.|..|+-.. .+...+...+++.+
T Consensus 466 p~~~~~G~~~~~~~~~~a~s~~~~~i 491 (498)
T KOG0637|consen 466 PLDQLFGGGNLPAFVSGAVALLIGGI 491 (498)
T ss_pred chhhhcCCcchhHHHHHHHHHHHHHH
Confidence 99998874433 33333333344333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=87.39 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.++..+.+..+..++.+..+++.||+|+|+.+.++..+..++.++.... ++...+ ..-++.|++.+..+|...+.
T Consensus 178 ~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~--~~~~~~-~~~~l~g~~~s~i~P~~~s~ 254 (310)
T TIGR01272 178 DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT--HGYVAM-WFVLALGLFNSIMFPTIFSL 254 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999988888888877666555 443333 35568899999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhh
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 131 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~ 131 (389)
..+..|+ +.+++.++. ....+|..+.|.+.|.+.|..|.+..|++..+
T Consensus 255 a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 255 ALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 9998864 456666765 55668999999999999999998888875443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.7e-08 Score=89.16 Aligned_cols=170 Identities=12% Similarity=0.045 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
.+..+..+........+++.|+.+.+|+++..+|.+..+.-+...+..++.|+++||.+.|... |+..+..+....
T Consensus 15 g~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Gr----rrp~il~~~~~~ 90 (444)
T PRK09669 15 GLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQ----FRPYLLWFAIPF 90 (444)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCC----cchhHHHHHHHH
Confidence 3444444555666778899999999999999999999999999999999999999995432110 012222232232
Q ss_pred HHHHHHHhhccc------hhhHHHHHHHHHhhhhccccccchhhhcccc--cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 278 GIALIGLTAAKS------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 278 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
++........+. ........++..........+..+...|..+ ++|++..+.......+|..+++.+...+.
T Consensus 91 ~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~ 170 (444)
T PRK09669 91 GVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV 170 (444)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211111 1122222222222233444455667777654 78999999999999998888887766655
Q ss_pred hhhh------hHHHHHHHHHHHHHHHHH
Q 016442 350 ELVG------SFQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 350 ~~~g------~~~~~~~~~~~~~~~~~~ 371 (389)
+..+ ++...+.+.+++.++..+
T Consensus 171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 171 DILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 4432 133444444444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-07 Score=85.96 Aligned_cols=152 Identities=17% Similarity=0.089 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
.+..+..+........++..|+.+..|+++..+|.+..+.-+...+.-++.|+++||...|... ++..+..+.+..
T Consensus 15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr----~rp~il~g~i~~ 90 (460)
T PRK11462 15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGK----FRPWVLFGALPF 90 (460)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCC----cchhHhHHHHHH
Confidence 3444455666677778899999999999999999999999999999999999999986443111 122223333333
Q ss_pred HHHHHHHhhccc------hhhHHHHHHHHHhhhhccccccchhhhcccc--cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 278 GIALIGLTAAKS------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 278 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
++....+...+. ........++......+...+..++..|..+ |+|++..+.......+|..+++.+...+.
T Consensus 91 ~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 91 GIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222111 1112222222333444555666777777765 79999999999999999888888877666
Q ss_pred hhhh
Q 016442 350 ELVG 353 (389)
Q Consensus 350 ~~~g 353 (389)
+..|
T Consensus 171 ~~~g 174 (460)
T PRK11462 171 NLIG 174 (460)
T ss_pred HHhC
Confidence 5543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=77.87 Aligned_cols=302 Identities=13% Similarity=0.039 Sum_probs=150.9
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
.|+|.+.-+..-..+++..+.|.++|+-|||+.-+.-++.+.++++- -.+ ++|-.++++|++-|+..+....+..++
T Consensus 72 G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT-KhS--pqYkVLmVGR~LGGiaTsLLFSaFEsW 148 (454)
T KOG4332|consen 72 GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT-KHS--PQYKVLMVGRVLGGIATSLLFSAFESW 148 (454)
T ss_pred CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh-hcC--CceEEEeehhhhhhHHHHHHHHHHHHH
Confidence 35666666666667788888999999999999766655555555442 234 889999999999999999888887665
Q ss_pred -HhcccCcCchhhHHHHHH--------hhhhhhhhhhhhhhhHhhcccC--cchhHHHHhhHHHHHHHHHHHhccCCCCC
Q 016442 82 -VARWFPQTERARAVAIAM--------GGFTSGNAIGLVLSPILMSQAG--IFGPFVIFGLSGFLWVLVWLSATSSTPDR 150 (389)
Q Consensus 82 -i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~l~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 150 (389)
+.|.. ++|+.---+.. .++.+-.+++...+..+.+.++ --.+|-..+.+..+...+...-..|.-.+
T Consensus 149 liaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygd 226 (454)
T KOG4332|consen 149 LIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGD 226 (454)
T ss_pred HHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCC
Confidence 45654 33443222222 3334445555556666666554 34455443333333222222211121111
Q ss_pred CCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHhccccch
Q 016442 151 HPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI-LSWMPIYFNFVYHIDLRQ 229 (389)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 229 (389)
+ .|.+... .+.+...+.+..++++..+.....+.-...+.+ ..|.|..--+..+ .-
T Consensus 227 p-----s~~kdll---------------tqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~---iP 283 (454)
T KOG4332|consen 227 P-----SENKDLL---------------TQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IP 283 (454)
T ss_pred h-----hhhHHHH---------------HHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCccc---CC
Confidence 1 1100000 011123345566666655554444444444333 2344432211111 12
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh--c---cchhhHHHHHHHHHhhh
Q 016442 230 ASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA--A---KSPVMASAWLTLAIGMK 304 (389)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 304 (389)
-|.+++.+...+++|+-+..++..|-..| .... ..+..........+..... . .++......++..-...
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~--ve~y---mqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cv 358 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPK--VESY---MQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACV 358 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcc--cchH---HHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHH
Confidence 35666666666666666555554442222 1111 1111111122222222211 1 12223333444444444
Q ss_pred hccccccchhhhcccc-cchhHHHHHHHHHhhh
Q 016442 305 SFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTF 336 (389)
Q Consensus 305 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~ 336 (389)
+.++|..+-.-....| +.|++.+-+...--++
T Consensus 359 GlfwPSimkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 359 GLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred hhcchHHHHHHHhhCCHHHHhhhhhheechhhH
Confidence 5556665555555556 6888777665544443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-08 Score=91.17 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=104.3
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc--------ccchHHHHHHHHHhhhhhc
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--------DTSLLALLAMRAVVGLAEG 72 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~ 72 (389)
+.++|.+.+...++..++....+++.+|++.|+++.++.++.+++.+...... .++.+.....-++.+++.+
T Consensus 287 ~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g 366 (468)
T TIGR00788 287 PSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ 366 (468)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH
Confidence 35678888889999999999999999999999999999999999886543110 0334456667789999999
Q ss_pred cchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC
Q 016442 73 VALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG 121 (389)
Q Consensus 73 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 121 (389)
....+...++.+..|+++++...++.+...++|..+++.+++.+.++.|
T Consensus 367 ~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 367 LKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999988776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=86.27 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=114.0
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc--ccch--H---HHHHHHHHhhhhhc-cch
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--DTSL--L---ALLAMRAVVGLAEG-VAL 75 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~--~---~l~~~r~l~G~~~~-~~~ 75 (389)
.-+.+....+...+..+.+..+.||+|||+.++.+..++.+..+++.... .+.. | ..+++.++..++.+ +.-
T Consensus 307 a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~g 386 (485)
T KOG0569|consen 307 AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPG 386 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCC
Confidence 34566677778889999999999999999999999999999888766542 0111 1 12334444333333 236
Q ss_pred hhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCC
Q 016442 76 PAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHP 152 (389)
Q Consensus 76 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (389)
|...-+.+|.+|++.|..+++......-+...+-...-..+.+..|- +.|....++..+..+..++..||++.+..
T Consensus 387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 88889999999999999999999999998888887777777776665 78888899999988899998888876544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-07 Score=83.83 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=135.1
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhh
Q 016442 185 FRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTL 264 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 264 (389)
..+++.+++...+++...+...+...+.+++=-++++ .+-.+..-|........+.++.-+..+++.+|+|+.
T Consensus 364 ~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv------ 436 (618)
T KOG3762|consen 364 VGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV------ 436 (618)
T ss_pred HHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc------
Confidence 3356777877777777777777777777777667777 566666677777777778888889999999999988
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHh-hhhhhHHh
Q 016442 265 TRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAG-TFAAILGT 342 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~-~~g~~~~~ 342 (389)
.++..++.+...=++.+...+++|..+..=++-.......+....++++.+.| +.+.++.++..... .+|-.+|+
T Consensus 437 ---~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs 513 (618)
T KOG3762|consen 437 ---NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGS 513 (618)
T ss_pred ---ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhh
Confidence 44456666667777777777888877777666555555556666677777665 89999999987765 49999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 343 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 343 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.++|.+.+++| -...|..+++.+++..+.+..+
T Consensus 514 lIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 514 LIGGFVVERFG-ARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998 6677777777666666555444
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=86.37 Aligned_cols=149 Identities=11% Similarity=0.142 Sum_probs=109.7
Q ss_pred HhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc--cchhhHHHH-HH
Q 016442 222 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA--KSPVMASAW-LT 298 (389)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~ 298 (389)
++++++.+.+++.+....+.+++.+.++++.||+|.| .+...+.+..++..+..+.. ...+..+.. ++
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r---------~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~l 137 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR---------RVFFISGLISALLTLLTPLAASIGFYLLLVLRFL 137 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch---------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4778899999999999999999999999999999999 44455555555544444432 222222223 33
Q ss_pred HHHhhhhccccccchhhhcc-cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 299 LAIGMKSFSHSGFLVNLQEI-APQYSGVLHGISNTAGTFAAILGTVGAGFFVEL-VGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+.+.+. ..+....+..+- +|++|++..++.....++|.+++-++.|++.+. .| |...|++.+.+.++-.++++.+
T Consensus 138 qGl~~g~-~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 138 QGLGQGV-LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred hHHHHhH-HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHH
Confidence 3444443 344444444444 458999999999999999999999999999999 76 9999999999988887777776
Q ss_pred ccCCc
Q 016442 377 STGER 381 (389)
Q Consensus 377 ~~~~~ 381 (389)
.++++
T Consensus 216 ~~d~P 220 (466)
T KOG2532|consen 216 YSDSP 220 (466)
T ss_pred hcCCc
Confidence 55443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.9e-07 Score=85.99 Aligned_cols=146 Identities=12% Similarity=0.022 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHcCCchhhHHHHHHHH
Q 016442 197 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML----IQRGTSVTLTRKILQSI 272 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~~~~~~~~ 272 (389)
..+..+..+........+++.|+++..|+++..+|.+....-+...+..++.|+++||. |||| ..+..
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrr--------p~il~ 82 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFK--------PWILI 82 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcc--------hhHhh
Confidence 34455556667777888999999999999999999999999999999999999999955 6652 22233
Q ss_pred HhhHHHHHHHHHhhcc---ch---hhHHHHHHHHHhhhhccccccchhhhccc--ccchhHHHHHHHHHhhhhhhHHhHH
Q 016442 273 GFIAPGIALIGLTAAK---SP---VMASAWLTLAIGMKSFSHSGFLVNLQEIA--PQYSGVLHGISNTAGTFAAILGTVG 344 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~~~~~~ 344 (389)
+....++.+..+...+ .. .......++......+...+..+...|+. +++|.+..+......++++.+.+.+
T Consensus 83 g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 83 GTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344343332222211 11 11111222222334455566667777776 3799999998778888887777666
Q ss_pred HHHHHh
Q 016442 345 AGFFVE 350 (389)
Q Consensus 345 ~g~l~~ 350 (389)
...+.+
T Consensus 163 ~~~~~~ 168 (473)
T PRK10429 163 TLPFVN 168 (473)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.5e-08 Score=88.43 Aligned_cols=171 Identities=18% Similarity=0.138 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHH----HHHHcCCchhhHHHHHHHHHhhH
Q 016442 201 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD----MLIQRGTSVTLTRKILQSIGFIA 276 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
.+...........+++.|+.+..|.++...|.+.....+...+..++.|.++| |+||||.. +..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~--------~l~g~i~ 81 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW--------ILIGAIL 81 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE--------eehhhHH
Confidence 34455556666778899999989999999999999999999999999999999 77777432 2333333
Q ss_pred HHHHHHHHhhc-c---c----hhhHHHHHHHHHhhhhccccccchhhhcccc--cchhHHHHHHHHHhhhhhhHHhHHHH
Q 016442 277 PGIALIGLTAA-K---S----PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--QYSGVLHGISNTAGTFAAILGTVGAG 346 (389)
Q Consensus 277 ~~~~~~~~~~~-~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g 346 (389)
.++....+... + + ........++..........+..+...|..+ ++|.+..+.......+|..+.+.+.+
T Consensus 82 ~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~ 161 (428)
T PF13347_consen 82 LALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP 161 (428)
T ss_pred HHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333322 1 1 1111222222233344455566677777775 68999999999999999988888888
Q ss_pred HHHhhhh------hHHHHHHHHHHHHHHHHHHHHHhccC
Q 016442 347 FFVELVG------SFQGFLLLTSLLYFLSALFYIIFSTG 379 (389)
Q Consensus 347 ~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (389)
.+.+..| ++.....+.+++.+++.+......|+
T Consensus 162 ~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 162 ILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 8776555 35666666666655555544444333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.5e-07 Score=77.01 Aligned_cols=311 Identities=12% Similarity=0.014 Sum_probs=175.0
Q ss_pred hhhhhhhhh-----hcCCeehhH-HHHHHHHHHHHHhhhhc---------ccchHHHHHHHHHhhhhhccchhhhHHHHh
Q 016442 19 PIAGGTLVD-----YYGGKIIMA-WGVALWSLATFLTPWAA---------DTSLLALLAMRAVVGLAEGVALPAMNNMVA 83 (389)
Q Consensus 19 ~~~~G~l~d-----r~Grr~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 83 (389)
-+.|.++.| |+||||.-+ -+..+.+......+... .++...+...-++.-+..+.-..+...+.-
T Consensus 80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL 159 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL 159 (510)
T ss_pred HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 357889999 999998532 22222222222222211 134444444556667777888888888888
Q ss_pred cccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc-------ccCcc---------hhHHHHhhHHHHHHHHHHHhccCC
Q 016442 84 RWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS-------QAGIF---------GPFVIFGLSGFLWVLVWLSATSST 147 (389)
Q Consensus 84 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~-------~~~w~---------~~f~~~~~~~~~~~~~~~~~~~~~ 147 (389)
....+++.|-+......+.+.|..++..+--.+.. ..+|. ...++.+...++.-.+..+..+|+
T Consensus 160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~ 239 (510)
T KOG3574|consen 160 TMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEN 239 (510)
T ss_pred HhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88889999999888888888888877765433322 11232 223445555566555555554444
Q ss_pred CCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccc
Q 016442 148 PDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDL 227 (389)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (389)
+++.. + +++...++..+-++++++-|.+..........-.++.+-....+.-+.| .|.+.
T Consensus 240 ~~~~~---~----------------e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~k 299 (510)
T KOG3574|consen 240 DESVD---E----------------ELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPK 299 (510)
T ss_pred chhhh---h----------------hhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCCh
Confidence 43311 0 0111222333456678888888888888888888898888888988888 69999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHhhHHHHHHHHH-hhc-c----chhhHHHHHHHH
Q 016442 228 RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRG-TSVTLTRKILQSIGFIAPGIALIGL-TAA-K----SPVMASAWLTLA 300 (389)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~~~~~~ 300 (389)
++.+.......-..+ ..++...|+...+ ......+....-+........+... +.. . -+....+..+..
T Consensus 300 e~Lal~~v~~~plqI----~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~ 375 (510)
T KOG3574|consen 300 EELALIAVPLVPLQI----ALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITS 375 (510)
T ss_pred hHheeeeeehhhHHH----hhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHH
Confidence 888876544333344 4444444433221 1111111111111111111111111 110 1 111112222211
Q ss_pred Hhhh----hccccccchhhhcc-cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh
Q 016442 301 IGMK----SFSHSGFLVNLQEI-APQYSGVLHGISNTAGTFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 301 ~~~~----~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 353 (389)
..+. .......++.-+.+ +|...|+.+.+.|+..++|+--=..++.++.|..+
T Consensus 376 y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 376 YAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 1111 11112223333344 45899999999999999999998899999998643
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-06 Score=72.10 Aligned_cols=158 Identities=12% Similarity=0.053 Sum_probs=118.1
Q ss_pred HHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc
Q 016442 208 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA 287 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (389)
..+....++..-++ +|.|...+|.+.+++.++..+.++...++.+|+|.+ ..+..+++........=...
T Consensus 28 itsvgPLL~~Ir~~-~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~e---------r~l~~~Llli~~G~~iR~~~ 97 (395)
T COG2807 28 ITSVGPLLDEIRQD-LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEE---------RSLFLALLLIAAGILIRSLG 97 (395)
T ss_pred hhhhhhhHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH---------HHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444 899999999999999999999999999999999998 33334444444443333332
Q ss_pred cchhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 016442 288 KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF 367 (389)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 367 (389)
+....+....+.+..-...+......+++-+||+.+..+|++.+...+++.+++.+.-.+.++.++++....+-+...+
T Consensus 98 -~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~al 176 (395)
T COG2807 98 -GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLAL 176 (395)
T ss_pred -cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHH
Confidence 3333333444444444455667788899999999999999999999999999999999999998668888888888888
Q ss_pred HHHHHHHHh
Q 016442 368 LSALFYIIF 376 (389)
Q Consensus 368 ~~~~~~~~~ 376 (389)
++.+.++..
T Consensus 177 lAl~~WlPq 185 (395)
T COG2807 177 LALLIWLPQ 185 (395)
T ss_pred HHHHHHhhh
Confidence 888877766
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-08 Score=86.80 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=118.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccC
Q 016442 8 PSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 87 (389)
Q Consensus 8 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 87 (389)
......+-++.-++.+++..++|+-+++..++.+..+=.+..+.. +|.|..+-.-++||+..+..+.+..+|+++..|
T Consensus 412 ~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~aliWaa~~sY~s~vaP 489 (618)
T KOG3762|consen 412 SALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHALIWAAIISYASHVAP 489 (618)
T ss_pred hhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 344445556666788899999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCchhhHHHHHHh-hhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 88 QTERARAVAIAMG-GFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 88 ~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
|+.|..+-++.+. ..++|-.+|.+++|.+.+.++=|..|...++.+++.+++....
T Consensus 490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred CcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999874 6679999999999999999999999999988887766554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-05 Score=72.17 Aligned_cols=281 Identities=8% Similarity=0.012 Sum_probs=145.6
Q ss_pred HhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-------------cC---cchhHHHH
Q 016442 66 VVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-------------AG---IFGPFVIF 129 (389)
Q Consensus 66 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-------------~~---w~~~f~~~ 129 (389)
+.=+-.+.-..+.-.+.-....+++++.+......+.+.|..++..+--.+-+. .| -..-..+.
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fw 206 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFW 206 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHH
Confidence 444445666777777777788889999888888888888777776654443210 01 11122344
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCcc-ccCCC-----CCCCCCchh---HHHhhcchhHHHHHHH
Q 016442 130 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPL-LMGNK-----HKPATVIPP---FRRLLSKMPTWSIIVA 200 (389)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~ 200 (389)
+...++..+...++.+|+|......+.++.+...++.++.. +.+++ ++....++. +.+++|-|++..+.+.
T Consensus 207 g~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~i 286 (544)
T PF13000_consen 207 GWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIII 286 (544)
T ss_pred HHHHHHHHHHHheEeecccccccCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHH
Confidence 55555555566666666554322111111000000000000 00010 011112222 3456777888888888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchh-----------------
Q 016442 201 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVT----------------- 263 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~----------------- 263 (389)
....-.++.........-+.| .|++.++.+....+ .....++.++++.|+.+.+....
T Consensus 287 lL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li----~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~ 361 (544)
T PF13000_consen 287 LLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLI----DFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIR 361 (544)
T ss_pred HHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHH----hhhHHHHHHHHhhhhhcCCCccccccccccccccccchhh
Confidence 888888887777777777777 69999888776433 45555666666666654432100
Q ss_pred -------hHHHHHHHHH-hhHHHHHH-H-HHhhc--c-chhhHHHHHHHHHhh----hhccccccchhhhc-ccccchhH
Q 016442 264 -------LTRKILQSIG-FIAPGIAL-I-GLTAA--K-SPVMASAWLTLAIGM----KSFSHSGFLVNLQE-IAPQYSGV 325 (389)
Q Consensus 264 -------~~~~~~~~~~-~~~~~~~~-~-~~~~~--~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~g~ 325 (389)
..+.++.... =+..++.. . ...++ . .+......++....+ .........+.-++ ..|..-|+
T Consensus 362 ~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGT 441 (544)
T PF13000_consen 362 LLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGT 441 (544)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchH
Confidence 0011111110 01111100 0 01111 1 112222222222222 22222233333334 44689999
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHhh
Q 016442 326 LHGISNTAGTFAAILGTVGAGFFVEL 351 (389)
Q Consensus 326 ~~g~~~~~~~~g~~~~~~~~g~l~~~ 351 (389)
.+-+.|++.++|+---..+.=++.|.
T Consensus 442 YMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 442 YMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 99999999999998877777777775
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0001 Score=68.04 Aligned_cols=231 Identities=11% Similarity=-0.003 Sum_probs=137.1
Q ss_pred HHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-------ccc----------------------hHHHHHHHH
Q 016442 15 YLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-------DTS----------------------LLALLAMRA 65 (389)
Q Consensus 15 ~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~----------------------~~~l~~~r~ 65 (389)
..+......+++||++|.+++-+....+.....++++.. +++ .|.+.+..+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 445566779999999999988877766666655555431 111 122222223
Q ss_pred Hhhhhhccchh-hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc---------ccCcchhHHH----Hhh
Q 016442 66 VVGLAEGVALP-AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS---------QAGIFGPFVI----FGL 131 (389)
Q Consensus 66 l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~---------~~~w~~~f~~----~~~ 131 (389)
+.-+-.....+ .-..+.+|.++.+|-.|..++...+.++|.+++..+...+.+ ...|...... ..+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~ 231 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLI 231 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHH
Confidence 32222223222 357888999999999999999999999999999998888877 1235433322 222
Q ss_pred HHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 016442 132 SGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI 211 (389)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (389)
.+.+.........++..+++... +++. ..+++.++....+.++.++|+|.+..+.+...+++.+.+.+
T Consensus 232 ~g~~i~~~~~~~~~~vl~~~~~~-~~~~-----------~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLv 299 (491)
T PF03219_consen 232 LGIVIILLYRYMNKNVLTDPRFY-PSAK-----------KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLV 299 (491)
T ss_pred HHHHHHHHHHHHHHHccCccccc-hhhh-----------cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222221111111110 0000 01122233445578888999999998888888888877777
Q ss_pred HHhhhHHHHHHhccccch----hhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Q 016442 212 LSWMPIYFNFVYHIDLRQ----ASWFSAVPWSVMAFTGYLGGLLSDMLIQR 258 (389)
Q Consensus 212 ~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 258 (389)
....-..+++.+. ++.+ .|......++..++..++++.+.+|+|-+
T Consensus 300 E~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 300 EVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6666566665443 3333 23344555666666667788888888876
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-07 Score=74.61 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=96.4
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHH-HHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT-FLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
+.+-+.+....-.++.+++.|.++||+|++...+.+..+..+.. ....++ ++.=++...+.|+..+.........
T Consensus 301 ~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----~lsPy~~m~~lGLsysllAcslWP~ 376 (459)
T KOG4686|consen 301 SAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----FLSPYTSMTFLGLSYSLLACSLWPC 376 (459)
T ss_pred hccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----hccHHHHHHHHhhhHHHHHHHHhhh
Confidence 44566666667778888999999999999988777666555443 333332 3444566778888877766667788
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC---cchhHHH-HhhHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFGPFVI-FGLSGFLWV 137 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~---w~~~f~~-~~~~~~~~~ 137 (389)
++...|+++.|.+.|..+...++|-.+.|++++.+.++.| |--.|.. .+.+++...
T Consensus 377 va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 377 VASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV 436 (459)
T ss_pred hhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999988654 4444443 444444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=71.54 Aligned_cols=158 Identities=19% Similarity=0.137 Sum_probs=96.4
Q ss_pred HHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH--
Q 016442 207 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL-- 284 (389)
Q Consensus 207 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 284 (389)
..+.+..|.|.. ++.+|+|++|...+.....++..+ ++..|.+.||+|++ ....++...........
T Consensus 17 t~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 17 TTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW---------VVLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred cccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH---------HHHHHHHHHHHHHHHHHHH
Confidence 345555666655 456899999999999888888876 58899999999988 44444444443333322
Q ss_pred hhcc----chhhHHHHHHHHHhhhh-ccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHH
Q 016442 285 TAAK----SPVMASAWLTLAIGMKS-FSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFL 359 (389)
Q Consensus 285 ~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 359 (389)
.... .+.+.........+.+. ...........+.+|++||++.|+......+++.+-..+...+.+. +....+
T Consensus 86 ~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~--~~~~fl 163 (250)
T PF06813_consen 86 AVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD--DPSSFL 163 (250)
T ss_pred HHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC--ChHHHH
Confidence 2211 22223333222222222 2223333334467789999999999999999999888888777765 233444
Q ss_pred HHHHHH-HHHHHHHHHHhc
Q 016442 360 LLTSLL-YFLSALFYIIFS 377 (389)
Q Consensus 360 ~~~~~~-~~~~~~~~~~~~ 377 (389)
.+.+.. .+++.+...+.+
T Consensus 164 l~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 164 LFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHHHhhhee
Confidence 444443 333344434443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=80.49 Aligned_cols=139 Identities=17% Similarity=0.047 Sum_probs=94.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccc
Q 016442 229 QASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308 (389)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (389)
+.+++.+...++..++.++.|+++|++||| ..+.++.+...+..+....+.+...+...=++.+...+...
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk---------~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRK---------KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhh
Confidence 347899999999999999999999999999 33334444444444444444455555554444333444445
Q ss_pred cccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 309 SGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELV-GSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 309 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.....+.+|..| +.||...+..+....+|..++ .+.+...++. .+|...+....+..++-.+..+..+
T Consensus 161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~p 230 (513)
T KOG0254|consen 161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLP 230 (513)
T ss_pred hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 667888999998 699999999999998888777 5666665543 1277676666666666555544443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=66.53 Aligned_cols=107 Identities=14% Similarity=0.174 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccC
Q 016442 8 PSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 87 (389)
Q Consensus 8 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 87 (389)
.++......++.++.+.+.+++|.|+.++++.+.+.+-.+.. +- ++.+.++.+-++.|++.+..+++--.++.+..+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~--~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FY--PNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hh--hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 345566678888899999999999999999999998766654 34 788999999999999999999999999999999
Q ss_pred cCchhhHHHHHHhhhhhhhhhhhhhhhHhh
Q 016442 88 QTERARAVAIAMGGFTSGNAIGLVLSPILM 117 (389)
Q Consensus 88 ~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 117 (389)
+++|++..++.......+.++|..+...+.
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887765553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=73.07 Aligned_cols=153 Identities=16% Similarity=0.081 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhH
Q 016442 197 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
.....+..+........|+..|+.+..|+++..+|.++.+.=+..++.-++.|.++||..+|... ++..+..+.+.
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr----fRP~lL~g~ip 92 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGR----FRPWLLWGAIP 92 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccc----ccHHHHHHhHH
Confidence 45556666677778889999999999999999999999999999999999999999987654322 12333344333
Q ss_pred HHHHHHHHhhcc-----c-hhhHHHHHHHHHhhhhccccccchhhhcccc--cchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 277 PGIALIGLTAAK-----S-PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP--QYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 277 ~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
.++.......++ . .........+..........+..++..+..+ ++|.+..+.-.....+|..+...+.+.+
T Consensus 93 ~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl 172 (467)
T COG2211 93 FAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL 172 (467)
T ss_pred HHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333222 1 1222222233333344555566666676654 7999999999999999999999988888
Q ss_pred Hhhhh
Q 016442 349 VELVG 353 (389)
Q Consensus 349 ~~~~g 353 (389)
.+..|
T Consensus 173 v~~~g 177 (467)
T COG2211 173 VKLFG 177 (467)
T ss_pred HHHhC
Confidence 87654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-06 Score=80.37 Aligned_cols=141 Identities=13% Similarity=0.011 Sum_probs=105.5
Q ss_pred hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHh
Q 016442 223 YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIG 302 (389)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (389)
...+.....+..+...++..+|.++.|.++||+||| .+...+.+...++-+.....++.....+.=++.+.
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk---------~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK---------PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF 183 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH---------HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 455667777888899999999999999999999999 55566666666666666666776666666555555
Q ss_pred hhhccccccchhhhccc-ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 303 MKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 303 ~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+..........+..|.. |++|+.+..+ ......++.++|...+++.. +|...++...+...+..+..++.
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444555556666665 4899999999 88888999999999999988 37788887777776666654444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-06 Score=76.68 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=102.5
Q ss_pred HHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHH
Q 016442 221 FVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLA 300 (389)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (389)
+..++...+.+...+.+.++.+++.+.++.+.||++.. +.+....+.-....++... .++.+..++.-++.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls--------~~l~~~~~~w~~~~~~~~~-~~s~~~~ialr~ll 144 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLS--------KGLSVSGILWGLFGFLTAA-VHSFPGLIALRFLL 144 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChH--------HHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 44677788899999999999999999999999999844 1222222222222222222 34444555555555
Q ss_pred Hhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHH
Q 016442 301 IGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE------LVGSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~ 373 (389)
+.+-+...|....++...+. ++|+.-+|+.+...++|+++|+.+...+.+ .. +|++.|++.+++.++..++.
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHheE
Confidence 55556667777777777776 799999999999999999999999988754 23 48999999888877666543
Q ss_pred H
Q 016442 374 I 374 (389)
Q Consensus 374 ~ 374 (389)
+
T Consensus 224 f 224 (495)
T KOG2533|consen 224 F 224 (495)
T ss_pred E
Confidence 3
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=63.45 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=86.6
Q ss_pred HhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHH
Q 016442 222 VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAI 301 (389)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (389)
.+|+++.+++.++......+.+.+.+.|.++||+||| ......++..+...+.-.. ++...++..=++++
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk---------~~cl~~cily~~scl~k~~-~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK---------KACLLFCILYSLSCLTKHS-SNYPVLLLGRVLGG 132 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---------HHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999 3333444444444443333 33333333333333
Q ss_pred hhhhccccccch-hhhccc----c-cchhHHHHHHHHH-hhhhhhHHhHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHH
Q 016442 302 GMKSFSHSGFLV-NLQEIA----P-QYSGVLHGISNTA-GTFAAILGTVGAGFFVELVGS-FQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 302 ~~~~~~~~~~~~-~~~~~~----~-~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~ 373 (389)
.......+..-+ ++.|.. | +..+...+..... +.+-.+....+.-++.|..+. ...+|.....+.+++.++.
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 333333333322 233322 2 3345555544422 334445555556666666552 4678888777777777665
Q ss_pred HHhcc
Q 016442 374 IIFST 378 (389)
Q Consensus 374 ~~~~~ 378 (389)
...++
T Consensus 213 ~~~W~ 217 (354)
T PF05631_consen 213 LKTWP 217 (354)
T ss_pred Hhccc
Confidence 54433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-06 Score=75.93 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=90.6
Q ss_pred ehhHHHHHHHHHHHHHhhhhccc-c------hHHHHHHHHHhhhhhccchhhhHHHHhcccCcC---chhhHHHHHHhhh
Q 016442 33 IIMAWGVALWSLATFLTPWAADT-S------LLALLAMRAVVGLAEGVALPAMNNMVARWFPQT---ERARAVAIAMGGF 102 (389)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 102 (389)
|++.++.+++.+|.++..++..+ + .+.++++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 46788899999999885544212 2 367899999999999999999999999999765 4677899999999
Q ss_pred hhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 103 TSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 103 ~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
++|..+++.+.+++-++.+|.+.|.+.++..++..+..+.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988877766555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=53.29 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Q 016442 197 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 258 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 258 (389)
+-..+++...+......++|.|+++ .|+|+.+.|.+.++..+...++.++.|.++||.+++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4456777888888999999999998 799999999999999999999999999999999998
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0066 Score=55.04 Aligned_cols=244 Identities=9% Similarity=-0.019 Sum_probs=140.5
Q ss_pred CcchhHHHHH-HHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc-------ccc-------------------
Q 016442 4 ADRFPSSFLW-GYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA-------DTS------------------- 56 (389)
Q Consensus 4 ~g~~~s~~~~-~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~------------------- 56 (389)
++++-+..-+ +..+..++.+++.+++.|.+++-.-+..+....+++++.. +++
T Consensus 63 I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~i 142 (509)
T COG3202 63 ISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFI 142 (509)
T ss_pred hHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeee
Confidence 3444455555 5677888889999999999998888888877777776542 111
Q ss_pred ----hHHHHHHHHHhhhhhccchh-hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC----------
Q 016442 57 ----LLALLAMRAVVGLAEGVALP-AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---------- 121 (389)
Q Consensus 57 ----~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~---------- 121 (389)
.|..-+...+.=+=.+.... .-.....|.++.+|-.|..+.++...+++..++..+..++.++-.
T Consensus 143 li~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~ 222 (509)
T COG3202 143 LIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLL 222 (509)
T ss_pred EeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHH
Confidence 02222222222222222222 345677899988999999999999999999999999888866321
Q ss_pred cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHH
Q 016442 122 IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVAN 201 (389)
Q Consensus 122 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (389)
.+..+.+.+..++++.....+.-+.-.+++.......+ ..+.+..+....+.++.+.|+|-++.+.+..
T Consensus 223 ~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~-----------kk~~~k~k~~~~~s~k~i~~SkyL~~ial~v 291 (509)
T COG3202 223 LQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK-----------KKKKKKLKLGLIESFKMILRSKYLGAIALLV 291 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc-----------ccccccccCcHHHHHHHHHhhhHHHHHHHHH
Confidence 23344445554455444444443332222211100000 0001222334456778888899888888887
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhccccchh---hhhhhHHHHH-HHHHHHHHHHHHHHHHHc
Q 016442 202 AMHSWGFFVILSWMPIYFNFVYHIDLRQA---SWFSAVPWSV-MAFTGYLGGLLSDMLIQR 258 (389)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-~~~~~~~~g~l~d~~~~~ 258 (389)
.+++.+.+.+....-.-.++.+..+.+.. |.+....++. .++...+++.+.+|.|-.
T Consensus 292 l~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~ 352 (509)
T COG3202 292 LAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWF 352 (509)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence 77777766655333333333222222222 2233333444 344456777777777765
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00025 Score=68.23 Aligned_cols=163 Identities=10% Similarity=0.022 Sum_probs=103.0
Q ss_pred HHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhh
Q 016442 207 GFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTA 286 (389)
Q Consensus 207 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
+++++...+..|+.+.+|++..++..+...+....-+..+++|+++|++-.+ . ..+..+.+...+....+..
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~-~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------F-KTILYLSIVYVVGHALLSF 73 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------H-HHHHHHHHHHHHHHHHHHh
Confidence 3556677778888888899999888888888888888899999999975444 1 2222222222222222221
Q ss_pred c--cc------hhhHHHHHHHHHhhhhccccccchhhhcccc-c---chhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh-
Q 016442 287 A--KS------PVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-Q---YSGVLHGISNTAGTFAAILGTVGAGFFVELVG- 353 (389)
Q Consensus 287 ~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g- 353 (389)
. +. ....+..+.+..+..+..-+...+...+..+ + .+-....+.....++|+.+++.+.+++.+..+
T Consensus 74 ~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~ 153 (654)
T TIGR00926 74 GAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC 153 (654)
T ss_pred ccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 11 0112222222222223333444555554443 2 46778888899999999999999999986541
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 354 -----SFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 354 -----~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
.+...|.+.+++++++.+++...+
T Consensus 154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 154 FGCQDCYPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 377888888888888877765543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00016 Score=66.44 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhc
Q 016442 238 WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQE 317 (389)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (389)
++...+.+...|.++||+||| ...........+......... +|..+ ..-..+..........++.++
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk---------~~L~~~~~~~~l~~~~~~~~~-~~~~~--~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRK---------VVLLLPLFGTILPALCLLFQG-YWFFL--LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhh---------hhHHHHHHHHHHhHHHHHHHH-HHHhh--hcccccchhhhhhhhhhheee
Confidence 677888889999999999999 222222222222222221211 22221 111222333444555677777
Q ss_pred ccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 318 IAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 318 ~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
... +.|....|+.+.....+..++|.+.+.+.+..| +...+.+..+..++..+.....
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~~f~ia~~~~~~~~~y~~~~ 198 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IALVFLIAAASGILSLLYMLLF 198 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHhhc
Confidence 776 799999999999999999999999999999987 7788888777777766654444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.6e-08 Score=88.81 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=97.8
Q ss_pred HHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhh--hh-ccc-----chHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 13 WGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTP--WA-ADT-----SLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 13 ~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~--~~-~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
+...++.+....+.||+|||+.++.+..+.+++.+..+ .. ..+ +...+.......-....+..+....+.+|
T Consensus 297 ~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~E 376 (451)
T PF00083_consen 297 LVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAE 376 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccc
Confidence 34456667777999999999999999999888887764 11 112 22222222222112222345666788999
Q ss_pred ccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 85 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 85 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
.+|.+.|++..++......++..+++.+...+.+..+-...+.+.+...++..+..+++.||+..+.
T Consensus 377 lfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 377 LFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence 9999999999999999999999999998888877666355666666667777777777777776543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=60.01 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=59.5
Q ss_pred CchhhHHHHHHhhhhhhhhhhhhhhhHh---hc--ccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHHHH
Q 016442 89 TERARAVAIAMGGFTSGNAIGLVLSPIL---MS--QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYIL 163 (389)
Q Consensus 89 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l---~~--~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (389)
|+|+....+...+.++|.++.-..--.- .+ .-.|++.+.+.+++.++-+++...+-.+-+...++ ++++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~----- 75 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQE----- 75 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccc-----
Confidence 5677777777778888877665432111 11 12599999998888777666666653332111111 0000
Q ss_pred HhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHH
Q 016442 164 REKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHS 205 (389)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (389)
+++.+.+.+.+.++.+|+|..|...+.+....
T Consensus 76 ----------k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL 107 (267)
T PF07672_consen 76 ----------KENSTLSKKPSYKSILKEKETWKWILIYGIWL 107 (267)
T ss_pred ----------cccccccccchHHHHHccchHHHHHHHHHHHh
Confidence 11122234467889999999998877766554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.6e-06 Score=74.56 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=100.5
Q ss_pred HHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccc----hHHHHHHHHHhhh-hhccchhhhHHHHhcccCcCc
Q 016442 16 LVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS----LLALLAMRAVVGL-AEGVALPAMNNMVARWFPQTE 90 (389)
Q Consensus 16 ~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~ 90 (389)
.-+-++...++|+.|||+..+.+.+++.+..+..+.. .| -..+++...+..+ +.-+.......+-+|.+|.+-
T Consensus 362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~--y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv 439 (538)
T KOG0252|consen 362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP--YNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV 439 (538)
T ss_pred CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCC--cccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence 3366777889999999999999999999999988877 33 2223333333332 222334455667789999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhhhHhhc-----ccCcchhHHHHhhHHHHHHHHHHHhccCCCC
Q 016442 91 RARAVAIAMGGFTSGNAIGLVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTPD 149 (389)
Q Consensus 91 r~~~~~~~~~~~~~G~~~g~~l~~~l~~-----~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 149 (389)
|+..-|+..+..-.|+++|...-..+.+ ..+.|+++++.+...++..+..++++ |+..
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~ 502 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP-ETKG 502 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee-cccc
Confidence 9999999999999999999999999888 67899999999998888776666664 5443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00084 Score=63.46 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhc-CCeehhHHHHHHHHHHHHHhhhhc-----cc---------------c---hHHHHHHH
Q 016442 9 SSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAA-----DT---------------S---LLALLAMR 64 (389)
Q Consensus 9 s~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-----~~---------------~---~~~l~~~r 64 (389)
+.+.-......+.++.++|-| ||-+++.++.++..++..+..... .+ + ...++...
T Consensus 80 ~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l 159 (571)
T KOG1237|consen 80 NAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGAL 159 (571)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHH
Confidence 344444556678899999975 899999999999998866544331 00 1 13577777
Q ss_pred HHhhhhhccchhhhHHHHhcccC---cCc---hhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHH
Q 016442 65 AVVGLAEGVALPAMNNMVARWFP---QTE---RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVL 138 (389)
Q Consensus 65 ~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~ 138 (389)
-+..+|.|+.-|...+.=+|-++ +++ +...+.++....+.|..++..+-.+.-+..+|.+.|.+..+...++.+
T Consensus 160 ~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 160 YLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred HHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHH
Confidence 88888999999999999999998 322 236788999999999999999888887888999999988877776655
Q ss_pred HHHH
Q 016442 139 VWLS 142 (389)
Q Consensus 139 ~~~~ 142 (389)
+.+.
T Consensus 240 iF~~ 243 (571)
T KOG1237|consen 240 IFLP 243 (571)
T ss_pred HHHc
Confidence 5444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0002 Score=63.36 Aligned_cols=140 Identities=16% Similarity=0.064 Sum_probs=111.4
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhh-hcCCeehhHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVD-YYGGKIIMAWGVALWSLATFLTPWAA-DTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
|...++.....|..++....|++.. |.++|+.-.+++....++..+..++. .++.+.+...-++.|++.|.+.....+
T Consensus 245 eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals 324 (403)
T PF03209_consen 245 ETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALS 324 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445677788888888888888887 67888888889888888877654442 267889999999999999999999999
Q ss_pred HHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc----------cCcchhHHHHhhHHHHHHHHHHH
Q 016442 81 MVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ----------AGIFGPFVIFGLSGFLWVLVWLS 142 (389)
Q Consensus 81 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~----------~~w~~~f~~~~~~~~~~~~~~~~ 142 (389)
..-|..++++.|..+|.+.....+...+|..+++.+.|. .++-.+|.+.++..+++..+...
T Consensus 325 ~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 325 LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888652 13455666666655555444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0012 Score=60.49 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=35.5
Q ss_pred chHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhh
Q 016442 56 SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVL 112 (389)
Q Consensus 56 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l 112 (389)
.++..++.-++.|++.+........+.+. +|++ .++.+..+.+++.+++..+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence 46677788889999999888888887774 5533 4455555555555555544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=60.02 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=91.0
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccCcC
Q 016442 10 SFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQT 89 (389)
Q Consensus 10 ~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 89 (389)
+-.+...+..+......||+.--.=+.+...+.+.+..+.+++ +|.++-+.+-.+..++.|.....-.++-+. +++
T Consensus 70 aDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y~~- 145 (409)
T KOG3880|consen 70 ADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSSR-YPS- 145 (409)
T ss_pred hhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhcc-CCC-
Confidence 3344455556666677888765444556667788888889999 999998989889888888766665554443 322
Q ss_pred chhhHHHHHHhhhhhhhhhhhhhhhHhhcc--cCcchhHHHHhhHHHHHHHHHHHhccCCCCCC
Q 016442 90 ERARAVAIAMGGFTSGNAIGLVLSPILMSQ--AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH 151 (389)
Q Consensus 90 ~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (389)
...+.++.+.+....+|..--..+.+. .+-|...++...+.++.+...++..++++...
T Consensus 146 ---~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~ 206 (409)
T KOG3880|consen 146 ---IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVY 206 (409)
T ss_pred ---ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCcccc
Confidence 244555666666666666555555553 35688888888877777777777776665443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00042 Score=63.18 Aligned_cols=174 Identities=12% Similarity=0.071 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH-HhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 195 WSIIVANAMHSWGFFVILSWMPIYFNF-VYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
+...+..++....+..+..-.-.|+++ +.+-+.+..|+..+...++..+.+++.|+...|.++-+. .+ ..+
T Consensus 37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~-------Pl-i~s 108 (488)
T KOG2325|consen 37 YLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK-------PL-IVS 108 (488)
T ss_pred HHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCccc-------CH-HHH
Confidence 334444444444444333333346655 235567778999999999999999999999999885321 22 122
Q ss_pred hhHHHHHHH---HHhhccc-hhhHHHHHHHHHhhhhccccccchhhhccc-ccchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 274 FIAPGIALI---GLTAAKS-PVMASAWLTLAIGMKSFSHSGFLVNLQEIA-PQYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 274 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
.+.+.++.+ .+....+ ....+...=+..|.+.......-.+.++.. +++|.++++..+....+|.++||.+...+
T Consensus 109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 222222211 2222222 211111111222222222333445555544 47888988888888888888888776554
Q ss_pred Hhh------------hhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 349 VEL------------VGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 349 ~~~------------~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
... ++.|..+-+++++..++..+.....
T Consensus 189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 421 2246667777777777766655544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0019 Score=57.69 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHhhh--HHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHH
Q 016442 192 MPTWSIIVANAMHSWGF-FVILSWMP--IYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKI 268 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 268 (389)
|+=|..++...+..+++ .....|.| .+.++.+| +...+-+...++.+..+...+.+.|+.||+|-| .
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR---------~ 110 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR---------T 110 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchH---------H
Confidence 33444555555555543 12222222 34555566 666777888899999999999999999999998 3
Q ss_pred HHHHHhhHHHHHH--HHHhhcc---chhhHHHHHHHHHhhhhcccccc----chhhhccc-ccchhHHHHHHHHHhhhhh
Q 016442 269 LQSIGFIAPGIAL--IGLTAAK---SPVMASAWLTLAIGMKSFSHSGF----LVNLQEIA-PQYSGVLHGISNTAGTFAA 338 (389)
Q Consensus 269 ~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~g~~~g~~~~~~~~g~ 338 (389)
...++.....+.. =.....+ +... ......+....+...+-. .-..+.-+ |++|+++..+..+...+|.
T Consensus 111 a~llgt~ln~iGa~Ir~iss~p~v~~~f~-~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGv 189 (480)
T KOG2563|consen 111 ALLLGTVLNGIGAWIRLISSLPFVPPLFR-RPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGV 189 (480)
T ss_pred HHHHHHHHHHHHHHHhhhccCccccccch-hhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHH
Confidence 3333333333322 2222222 1111 122223333333222221 22333334 4899999999999988999
Q ss_pred hHHhHHHHHHHhhh
Q 016442 339 ILGTVGAGFFVELV 352 (389)
Q Consensus 339 ~~~~~~~g~l~~~~ 352 (389)
+++..+-+.+..+.
T Consensus 190 avg~llppilV~~~ 203 (480)
T KOG2563|consen 190 AVGFLLPPILVPSS 203 (480)
T ss_pred HHHhhccceecCCC
Confidence 99888888777654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00076 Score=62.14 Aligned_cols=158 Identities=21% Similarity=0.227 Sum_probs=92.5
Q ss_pred hhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc----cch
Q 016442 215 MPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA----KSP 290 (389)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 290 (389)
...++++++|+++.+...+.....+... ..++.|.++|-+.-++.+ |+..+.++.+........+... .+.
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 3456777799999998887666555443 467889999987522111 2233344443332222222211 112
Q ss_pred hhHHHHHHHHHhhhhccccccchhhhccc---ccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 016442 291 VMASAWLTLAIGMKSFSHSGFLVNLQEIA---PQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF 367 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 367 (389)
.....+.++........-....+...|.. |+.+|...+.......+|+.++..+.|.+.+..+ ++..|.+.+.+..
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPL 165 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHH
Confidence 22222222222222223333344444433 3348899999999999999999999999999886 7777777776666
Q ss_pred HHHHHHHHhcc
Q 016442 368 LSALFYIIFST 378 (389)
Q Consensus 368 ~~~~~~~~~~~ 378 (389)
+..+......+
T Consensus 166 l~~~~~~~~~~ 176 (433)
T PF03092_consen 166 LMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHhhh
Confidence 55544444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.022 Score=53.74 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAP 277 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
.+..++..++...+.......+...+|-+....+.+.+.+..+..+|+.+++++.++..++ .. ..-+.++++..
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-----~~-~~e~~i~l~~~ 93 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-----FV-AVELLLALLGG 93 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HH-HHHHHHHHHHH
Confidence 4444555555556666666666666787888888888888888888888877776433222 00 01111111111
Q ss_pred HHHH---HHHhhccch-hhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHh-hh
Q 016442 278 GIAL---IGLTAAKSP-VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVE-LV 352 (389)
Q Consensus 278 ~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~~ 352 (389)
.... ......... .......+....+.+...|...-+..+...+..+...|-......+|+.+|+.+.+++.- ..
T Consensus 94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~l 173 (521)
T PRK03612 94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRL 173 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhc
Confidence 1111 111111111 111111111222223333333333333222345677888889999999999999998764 67
Q ss_pred hhHHHHHHHHHHHHHHH
Q 016442 353 GSFQGFLLLTSLLYFLS 369 (389)
Q Consensus 353 g~~~~~~~~~~~~~~~~ 369 (389)
|.....+....+..+++
T Consensus 174 G~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 174 GLIRTAALTGSLNLLAA 190 (521)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 73344444433333333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.032 Score=43.08 Aligned_cols=107 Identities=12% Similarity=-0.003 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
-.++......+..++.+.+.+++|.| +.+.++.+.-.+........+ .+..+....+.+...+..+...-
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~~~~-~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFFYPN-SYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhHHhhHhhh
Confidence 34566677788888899999999999 555555555554444443333 33434443333333344455555
Q ss_pred hhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 313 VNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 313 ~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
.++.+..+ +.+++-.|+.-.+.+.+..+|..+.-.+.
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655 68888888888888888777776655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00038 Score=47.03 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=52.3
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLAL 60 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 60 (389)
+|.|++.+.+++||.+|++...++.++..+++.+..+.+...+..+.+++. ++++.+
T Consensus 27 ~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~~w 83 (85)
T PF06779_consen 27 SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFWLW 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchHHH
Confidence 467899999999999999999999999888999999999999999999998 777654
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.11 Score=47.46 Aligned_cols=177 Identities=12% Similarity=0.124 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI 272 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 272 (389)
..+.+....++...+.-...+-.|.++.+.+.-+-.-.+.+...-.+..++.+...|...||..|.+...... ...-.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l--~~Qn~ 80 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSL--VVQNL 80 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHH--HHHHH
Confidence 3566788888999999999999999999976545444555555666777778888899999988775432211 11122
Q ss_pred HhhHHHHHHHHHh-hcc----chhhHHHHHHH---HHhhhhccccccch--------hhhcccccchhHHHHHHHHHhhh
Q 016442 273 GFIAPGIALIGLT-AAK----SPVMASAWLTL---AIGMKSFSHSGFLV--------NLQEIAPQYSGVLHGISNTAGTF 336 (389)
Q Consensus 273 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~g~~~~~~~~ 336 (389)
........+.... ... +.+....++.. .............. .+.+-.++...+.++.+.-+-.+
T Consensus 81 sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ 160 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLF 160 (432)
T ss_pred HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHH
Confidence 2222222222221 111 11222222211 11111111111111 11122345667778888888889
Q ss_pred hhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 016442 337 AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALF 372 (389)
Q Consensus 337 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 372 (389)
...++|.+.|.+.+..+ ......+.++..+++...
T Consensus 161 ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 161 CKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 666666666666666654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.025 Score=50.51 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCc
Q 016442 55 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTE 90 (389)
Q Consensus 55 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 90 (389)
..+...++.-.+.+.+.|..........++. |+|.
T Consensus 115 ~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y 149 (406)
T KOG1479|consen 115 GFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY 149 (406)
T ss_pred hhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH
Confidence 3466677778888898888887777777764 4443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.029 Score=51.88 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcc-----ccchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHcCCchhhH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHI-----DLRQASWFSAVPWSVMAFT-GYLGGLLSDMLIQRGTSVTLT 265 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~ 265 (389)
|++....+..++..+.++.. --++|.... +.+...++-+...+...+. .++-+++++|++|++......
T Consensus 7 ~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 34545555555554444333 234554444 3345666655555555555 688899999999884432111
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccc--------------------------hhhHHHHHHHHHhhhhcccc-ccchhhhcc
Q 016442 266 RKILQSIGFIAPGIALIGLTAAKS--------------------------PVMASAWLTLAIGMKSFSHS-GFLVNLQEI 318 (389)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 318 (389)
...............+..+. .|......+..-.++....+ ..+..++|.
T Consensus 82 ----~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi 157 (472)
T TIGR00769 82 ----SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI 157 (472)
T ss_pred ----HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111111111111111111 11111222222233333444 668889999
Q ss_pred cc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 319 AP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 319 ~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
.. ++..+-.++....+++|..+++.+..++.+
T Consensus 158 ~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 158 TTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 788999999999999999999999988873
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=40.02 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH
Q 016442 205 SWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL 284 (389)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (389)
..+-+.+...+|...+| .++|..+.+++.+...++..+|.+...++.++..++ .+...+++.........
T Consensus 5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR---------RLLRAGLLLTVLSTAAM 74 (85)
T ss_pred hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHH
Confidence 34556777788877777 799999999999999999999999999888875444 44445555555555555
Q ss_pred hhccc
Q 016442 285 TAAKS 289 (389)
Q Consensus 285 ~~~~~ 289 (389)
...++
T Consensus 75 a~~~~ 79 (85)
T PF06779_consen 75 ALTHS 79 (85)
T ss_pred HHHhc
Confidence 44443
|
Note that many members are hypothetical proteins. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0006 Score=45.59 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=36.0
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALW 42 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~ 42 (389)
.|+|.+.++..+...++++++|.++||+++++.++......
T Consensus 35 ~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 35 SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 57889999999999999999999999999998877766543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.044 Score=52.82 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=105.2
Q ss_pred HHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc--
Q 016442 210 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA-- 287 (389)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 287 (389)
++....-.-+++.++++..+.|.+.+.+-++..+......+...|..|.++ +..+.+.+++..++....
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~---------Ig~G~~~m~lgsll~alPHf 184 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRW---------IGIGLVLMGLGSLLFALPHF 184 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccce---------eeechhHHHHHHHHHhChHH
Confidence 555555556677899999999999999999998888888888777766532 233333333322211100
Q ss_pred ----------------------------------------------cchhhHHHHHHHHHhhhhccc----cccchhhhc
Q 016442 288 ----------------------------------------------KSPVMASAWLTLAIGMKSFSH----SGFLVNLQE 317 (389)
Q Consensus 288 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 317 (389)
.........++++....++.. +.-..++.|
T Consensus 185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD 264 (735)
T KOG3626|consen 185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD 264 (735)
T ss_pred hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence 000112223333333333332 344567777
Q ss_pred ccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhh------------------hhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 318 IAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL------------------VGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 318 ~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
... ++.....|+...+..+|=++|-.+++.+... .|-|...|++++.+.++..+.++.+++
T Consensus 265 nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 265 NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 776 6788899999888888888887777777642 235777788888888888888888876
Q ss_pred CCcc
Q 016442 379 GERV 382 (389)
Q Consensus 379 ~~~~ 382 (389)
..++
T Consensus 345 ~lp~ 348 (735)
T KOG3626|consen 345 ELPK 348 (735)
T ss_pred cCcc
Confidence 5543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.21 Score=45.17 Aligned_cols=159 Identities=9% Similarity=-0.029 Sum_probs=91.0
Q ss_pred HHHHhhhHHHHHH-hccccchhhhhhhHH-HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc
Q 016442 210 VILSWMPIYFNFV-YHIDLRQASWFSAVP-WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA 287 (389)
Q Consensus 210 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (389)
-...++..|+.+. .|++.++...-..+. .=..+...+....+.|.++.| .++.+..+........+...
T Consensus 21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk---------pviil~~~~~i~t~~lll~~ 91 (412)
T PF01770_consen 21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK---------PVIILQALSYIITWLLLLFG 91 (412)
T ss_pred CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHH
Confidence 3456777788775 788888776433322 223445557788899999888 44444444444433333333
Q ss_pred cchhhH-HHHHHHHHhhhhccccccchhhh-cccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhh-hhHHHHHHHHHH
Q 016442 288 KSPVMA-SAWLTLAIGMKSFSHSGFLVNLQ-EIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELV-GSFQGFLLLTSL 364 (389)
Q Consensus 288 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~ 364 (389)
++.... +.-++.+... ..-....+++- .++|++--++.+......-+|..++..++-.+.... .++.....+...
T Consensus 92 ~sv~~mq~~q~~yg~~~--a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~ 169 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLAT--AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA 169 (412)
T ss_pred CcHHHHHHHHHHHHHHH--HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 443322 2222222222 22233334433 344566677788888888888888877777666532 246666666655
Q ss_pred HHHHHHHHHHHhccC
Q 016442 365 LYFLSALFYIIFSTG 379 (389)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (389)
...++.+..+++++.
T Consensus 170 ~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 170 SVSLALLIALFLPMP 184 (412)
T ss_pred HHHHHHHHHHHcCCC
Confidence 556666665666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.2 Score=43.31 Aligned_cols=138 Identities=16% Similarity=0.137 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhHHHHHHhcccc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHH
Q 016442 206 WGFFVILSWMPIYFNFVYHIDL--RQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIG 283 (389)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (389)
..........+.+..+ .+.+. ...+.......+...++.+..|++.||.||| +...........+.....
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~ 87 (338)
T COG0477 16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-------KVLIIGLLLFLLGTLLLA 87 (338)
T ss_pred HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-------HHHHHHHHHHHHHHHHHH
Confidence 3344444556666655 34344 3678888888888888889999999999777 112222211111111111
Q ss_pred HhhccchhhHHHHHHHHHhhhhccccccchhhhccccc--chhHHHHHHHH-HhhhhhhHHhHHHHHHHhh
Q 016442 284 LTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQ--YSGVLHGISNT-AGTFAAILGTVGAGFFVEL 351 (389)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~ 351 (389)
.....................+...+....+..+..|+ .|+...+.... ...++..++|.+.+.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 88 LAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred hCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222222222234445556677777774 78888888888 5778888888777777765
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.059 Score=49.36 Aligned_cols=108 Identities=15% Similarity=0.191 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhhhh----hhhhh---hhcCCeehhHHHHHHHHHHHHHhhhhc----------------ccchHHHHHHH
Q 016442 8 PSSFLWGYLVSPIA----GGTLV---DYYGGKIIMAWGVALWSLATFLTPWAA----------------DTSLLALLAMR 64 (389)
Q Consensus 8 ~s~~~~~~~~~~~~----~G~l~---dr~Grr~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~r 64 (389)
..++.++..++... .+.+. +|+||++.+..+..+..++.++.-... .+++...++.-
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 34444444444443 44444 568999999999999999888765442 13466778888
Q ss_pred HHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHh
Q 016442 65 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 116 (389)
Q Consensus 65 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 116 (389)
++.|++.+......+.++.+.. +++|.++.++.-.-..++..++-......
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999 68899999998888888877666554443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.064 Score=50.64 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=77.3
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHH---HHHHHhhhhc--ccc-hHHHHHHHHHhhhhhccchhh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATFLTPWAA--DTS-LLALLAMRAVVGLAEGVALPA 77 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~---~~~~~~~~~~--~~~-~~~l~~~r~l~G~~~~~~~~~ 77 (389)
.+.+.+++..|.++|+..++++.++--|+.. ..-..+.. ++..+..... ... ...++..-++.++..|...|.
T Consensus 52 ~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl 130 (521)
T PRK03612 52 FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPL 130 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998887643322221 11111111 1111111110 011 122344456677778887787
Q ss_pred hHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh-cccCcchhHHHHhhHHHHHH
Q 016442 78 MNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAGIFGPFVIFGLSGFLWV 137 (389)
Q Consensus 78 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~w~~~f~~~~~~~~~~~ 137 (389)
...+..+.. .++-++..|.......+|+++|.++.+++. ..+|-....++.+.+.+++.
T Consensus 131 ~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 131 LMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred HHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 777666543 234567889999999999999999987754 46675444444444444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.003 Score=59.66 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=1.0
Q ss_pred HHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh
Q 016442 206 WGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT 285 (389)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (389)
....++....-.-++++++++..+.|.+.+..-++..+..++..++.+|-+|. ..+..+.+++++..+.+.
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp---------rwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP---------RWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc---------ceeeecHHHHHHHHHHHh
Confidence 44444444444566777999999999999999999999999888888876544 222333333333332211
Q ss_pred hc----------------------------------------------cchhhHHHHHHHHHhhhhccc----cccchhh
Q 016442 286 AA----------------------------------------------KSPVMASAWLTLAIGMKSFSH----SGFLVNL 315 (389)
Q Consensus 286 ~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 315 (389)
.+ .........++++-...++.. +.-.+++
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 00 000112223333333333333 3445677
Q ss_pred hcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhh---------------------hhhHHHHHHHHHHHHHHHHHHH
Q 016442 316 QEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVEL---------------------VGSFQGFLLLTSLLYFLSALFY 373 (389)
Q Consensus 316 ~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---------------------~g~~~~~~~~~~~~~~~~~~~~ 373 (389)
.|..+ +..+...|+......+|-++|-.+++...+. .|.|...|++.+.+.++..+.+
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 6778888888888888877777777766532 1235566777777777766666
Q ss_pred HHhccC
Q 016442 374 IIFSTG 379 (389)
Q Consensus 374 ~~~~~~ 379 (389)
+.++|+
T Consensus 247 ~~FPk~ 252 (539)
T PF03137_consen 247 FFFPKK 252 (539)
T ss_dssp ------
T ss_pred HcCCcc
Confidence 666543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.88 Score=39.50 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=58.3
Q ss_pred HHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccC
Q 016442 11 FLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFP 87 (389)
Q Consensus 11 ~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 87 (389)
..+..+...++.+.+..++|-|+++.++...+......--. +.+..++-.-...|++.+..+..--+++++.-.
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~---pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE---PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc---hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 34555667777778999999999999998888766544332 788999999999999999988887777776653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.21 Score=45.24 Aligned_cols=83 Identities=5% Similarity=-0.021 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhhccccccchhhhcccc----cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 016442 293 ASAWLTLAIGMKSFSHSGFLVNLQEIAP----QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFL 368 (389)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 368 (389)
.+.+.++..|.++.= +.......+..+ +++.+.........++|..+++...+++.++.| |...|.+.++..++
T Consensus 37 ~~gL~lia~G~G~~K-~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~ 114 (372)
T PF00854_consen 37 YIGLALIAVGTGGIK-PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLL 114 (372)
T ss_dssp HHHHHHHHHHHHCCH-HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccc-ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc-hhhhhhHHHHHHHH
Confidence 333444444444333 333444444433 356778888899999999999999999999988 99999999999988
Q ss_pred HHHHHHHhc
Q 016442 369 SALFYIIFS 377 (389)
Q Consensus 369 ~~~~~~~~~ 377 (389)
+.+.++.-+
T Consensus 115 ~~~~f~~~~ 123 (372)
T PF00854_consen 115 ALIVFLSGR 123 (372)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHhCC
Confidence 888766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.0052 Score=53.87 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=1.7
Q ss_pred hccccccchhhhcc-cccchhHHHHHHHHHhhhhhhHHhHHH
Q 016442 305 SFSHSGFLVNLQEI-APQYSGVLHGISNTAGTFAAILGTVGA 345 (389)
Q Consensus 305 ~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~ 345 (389)
+...+..+.+..+. .|++|..+..+...+-..|-.+|..+.
T Consensus 263 Gyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 263 GYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ----HHHH----------------------------------
T ss_pred chhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444 346777777777777777777666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.9 Score=38.90 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
.+..++.........+.+.+-.+.|.++..+.++ ...+.......+.+...+...+..|...|.+. ..+..+....
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~--~~~~~l~~~~ 95 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRT--RVGYLLSLIA 95 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3444444444555677777777777666544444 44444445555555555555555554444110 0111111122
Q ss_pred hhHHHHHHHHHhhcc-c----hhhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHH
Q 016442 274 FIAPGIALIGLTAAK-S----PVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 274 ~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 348 (389)
.+......+...... . ............+..+..........++.++|.....++-.+..+.+.+... .+....
T Consensus 96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~-i~tka~ 174 (406)
T KOG1479|consen 96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLR-ILTKAA 174 (406)
T ss_pred HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHH-HHHHHh
Confidence 222222222221111 1 1122222233333344555666777777877766555554444444333222 222222
Q ss_pred H-hhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 349 V-ELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 349 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
. |.-.+-...|.+..+..+++.+++..+
T Consensus 175 ~~~~~~sA~~yF~~s~~~~llC~i~y~~l 203 (406)
T KOG1479|consen 175 FSDSRTSALIYFITSTVILLLCFVLYLVL 203 (406)
T ss_pred cCCCCceeehhHHHHHHHHHHHHHHHHHh
Confidence 2 221223455666666667777666644
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.13 Score=46.33 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred cchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHh
Q 016442 55 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 116 (389)
Q Consensus 55 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 116 (389)
+|.|..++.-+..|+..|..+......+.|-.|+++|-.++|..+.+.+.|..++..++-.+
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999887665
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.048 Score=49.16 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHcCCchhhHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML----IQRGTSVTLTRKI 268 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----~~~~~~~~~~~~~ 268 (389)
+........+...++...=..+.|+|+++ .|.+.+..+.+....-+.+.+.+++.|..+||. ||||.
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-------- 103 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-------- 103 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccc--------
Confidence 34445555556666776777999999998 699988888888888888999999999999964 45533
Q ss_pred HHHHHhhHHHHHHHHHhhc---------cc----hhhHHHHHHHHHhhhh----ccccccchhhhcccc-cchhH-HHHH
Q 016442 269 LQSIGFIAPGIALIGLTAA---------KS----PVMASAWLTLAIGMKS----FSHSGFLVNLQEIAP-QYSGV-LHGI 329 (389)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~g~-~~g~ 329 (389)
.+........+.+...... +. ....+...++++...- ....+.-++..++.. +++-+ +++.
T Consensus 104 fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~ 183 (498)
T KOG0637|consen 104 FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSV 183 (498)
T ss_pred hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchh
Confidence 2222222333322222211 11 1122333333333222 222334455666554 45555 9999
Q ss_pred HHHHhhhhhhHHhHHHHHH
Q 016442 330 SNTAGTFAAILGTVGAGFF 348 (389)
Q Consensus 330 ~~~~~~~g~~~~~~~~g~l 348 (389)
...+..+|+.+|-...++.
T Consensus 184 f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 184 FSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhcceeeeeccccc
Confidence 9999999988887666543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.83 Score=38.54 Aligned_cols=139 Identities=12% Similarity=0.033 Sum_probs=88.8
Q ss_pred CcchhHHHHHHHHHhhhhhhhhhhhcCCe--ehhHHHHHHHHHHHHHhhhh----c-ccchHHHHHHHHHhhhhhccchh
Q 016442 4 ADRFPSSFLWGYLVSPIAGGTLVDYYGGK--IIMAWGVALWSLATFLTPWA----A-DTSLLALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 4 ~g~~~s~~~~~~~~~~~~~G~l~dr~Grr--~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~r~l~G~~~~~~~~ 76 (389)
.|.+.+.++++.++|+-+..++..|-.+| ..+.+...+..+...+.... + +.+...=+++-.+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 57889999999999999988888876655 45555555554444432222 1 12222334445555567788999
Q ss_pred hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHH
Q 016442 77 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLS 142 (389)
Q Consensus 77 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 142 (389)
..+.+-+++.|+++|...+.++..-.++=..++-..--.-....+-|..|-++.+...+..+....
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~ 429 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQRR 429 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999998877666544333211000000124567888877776666554433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.7 Score=38.81 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHcCC
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSD-----MLIQRGT 260 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~ 260 (389)
+++..+...+..+........ -+|.+++. .|.|-++.+.......-.+ --++...+.| |+||||.
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~Grrks 100 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKS 100 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccc
Confidence 345555566666665554444 88988886 4777666665443332222 1345566666 9999843
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.025 Score=46.78 Aligned_cols=64 Identities=3% Similarity=0.083 Sum_probs=46.4
Q ss_pred hHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHH
Q 016442 184 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYL 247 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 247 (389)
+|..-+++-.+..+.+.+.+.-...+..+.++|.|..+.++++.....++-.+..+++...+.+
T Consensus 193 ~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v 256 (412)
T KOG4830|consen 193 HWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV 256 (412)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence 4445566667777778888877778888899999988888888777777666666665554443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.01 E-value=11 Score=36.20 Aligned_cols=171 Identities=18% Similarity=0.145 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhH
Q 016442 197 IIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIA 276 (389)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (389)
....-.+-..+++++...+-.|+.+.++.+...+...............+.+++++|.+--|- ..+.++.++
T Consensus 42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry--------~tI~~~s~i 113 (571)
T KOG1237|consen 42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRY--------FTINIGSLI 113 (571)
T ss_pred HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHH
Confidence 333444455566677777888888888888877777777777777777889999999766551 222222222
Q ss_pred HHHHHHHHh-------h---------c----cchh-h---HHHHHHHHHh-hhhccccccchhhhccc----c-c--chh
Q 016442 277 PGIALIGLT-------A---------A----KSPV-M---ASAWLTLAIG-MKSFSHSGFLVNLQEIA----P-Q--YSG 324 (389)
Q Consensus 277 ~~~~~~~~~-------~---------~----~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~-~--~~g 324 (389)
.......+. . . +... . .+...+.... ..+..-+......++-+ | + ...
T Consensus 114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~ 193 (571)
T KOG1237|consen 114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP 193 (571)
T ss_pred HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence 221111110 0 0 0001 0 1111111111 11111233333433333 2 2 334
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 325 VLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 325 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.-+.......+.|..++..+.-++-|+.+ +...|.+..++..+++++++.-
T Consensus 194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~~g 244 (571)
T KOG1237|consen 194 SFFNWFYFSQNGGALLAQTVLVYIQDNVG-WKLGFGIPTVLNALAILIFLPG 244 (571)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhccc-ceeeccHHHHHHHHHHHHHHcC
Confidence 67788888889999999999999888876 8888888888888877776543
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.11 E-value=7.5 Score=34.74 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q 016442 193 PTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSI 272 (389)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 272 (389)
....+.+.++....+--...+-...|+.+-.|-+.......-..-....++...+.|...|+..|+|...+.. .+.-.
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L--~lqNl 105 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL--LLQNL 105 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH--hhccH
Confidence 3444567777777777777777788888755544444455444555556666777788889998886543322 22222
Q ss_pred HhhHHHHHHHHHhhc------cchhhHHHHHHHHHhhhhc---cccccc-hh-------h-hcccccchhHHHHHHHHHh
Q 016442 273 GFIAPGIALIGLTAA------KSPVMASAWLTLAIGMKSF---SHSGFL-VN-------L-QEIAPQYSGVLHGISNTAG 334 (389)
Q Consensus 273 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-------~-~~~~~~~~g~~~g~~~~~~ 334 (389)
..+.++..+...... +.++... +.++....+.. ...... .+ + +.-.|.......+.....-
T Consensus 106 Sv~vagglvi~~l~~~~~~~~t~pv~t~-~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iD 184 (503)
T KOG2601|consen 106 SVIVAGGLVITLLVHKDLKSATSPVFTV-CLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGID 184 (503)
T ss_pred HHHHHHHHHhhheeecchhcccccHHHH-HHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhh
Confidence 333333333222221 2333222 22222111111 111111 11 1 1112233333446666677
Q ss_pred hhhhhHHhHHHHHHHhhhh
Q 016442 335 TFAAILGTVGAGFFVELVG 353 (389)
Q Consensus 335 ~~g~~~~~~~~g~l~~~~g 353 (389)
..-..+.|.+.|.+.+..+
T Consensus 185 q~tn~Lapv~tg~Iitfvs 203 (503)
T KOG2601|consen 185 QSTNLLAPVITGLIITFVS 203 (503)
T ss_pred hhhhchhhhhhcccceeec
Confidence 7888999999999988765
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=85.90 E-value=14 Score=35.27 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=17.4
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016442 225 IDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQ 257 (389)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 257 (389)
.++..-|.+....-+.-++.+.++|+.+.|.-+
T Consensus 290 ~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk 322 (521)
T PF02990_consen 290 LSPNNRGSLLTAAIILYALTSFIAGYVSARLYK 322 (521)
T ss_pred ccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345544555555455555555555555555544
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.49 E-value=6 Score=36.68 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=54.0
Q ss_pred cchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHh
Q 016442 55 TSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 116 (389)
Q Consensus 55 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 116 (389)
+|-+..++.-++.|+..|-....+..+..+..+++||..+-.+...+..+|..+|..++-.+
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777899999999999999999999999999999999999999999999998876544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.51 E-value=4.7 Score=34.98 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=58.8
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHh
Q 016442 43 SLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 116 (389)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 116 (389)
.+.-....+. ++++..++.-+.-|+-.|..++...--+.+-.++++|-.+|+.....-++|..++..++-.+
T Consensus 330 f~~~a~~~ft--psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 330 FLLQAWYWFT--PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHhc--cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3334445566 89999999999999888888888877777777889999999999999999999888876544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.61 E-value=7.7 Score=34.36 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=67.5
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhH--HHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHH
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMA--WGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMV 82 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 82 (389)
|-.-++..+..+++.+..|.+--++.|..-++ .+...-+...+.+..+ ++.|..+++.++.+.-.....+.+..-+
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t--~~Iw~~Ya~yvlfr~~y~l~itiA~~~i 351 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT--QHIWVCYAGYVLFRVIYQLTITIATFQI 351 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc--cceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence 33445667778888899999988887764444 4433344444445555 8999988888888877777788888888
Q ss_pred hcccCcCchhhHHHHHHh
Q 016442 83 ARWFPQTERARAVAIAMG 100 (389)
Q Consensus 83 ~~~~~~~~r~~~~~~~~~ 100 (389)
++..++|.-|..+|+...
T Consensus 352 A~nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 352 ARNLSSELFGLVFGINTF 369 (433)
T ss_pred HHhhhhhhheeeeehHHH
Confidence 888877777887777654
|
|
| >PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.50 E-value=25 Score=29.74 Aligned_cols=25 Identities=12% Similarity=-0.145 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 016442 198 IVANAMHSWGFFVILSWMPIYFNFV 222 (389)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (389)
.+...+.....++.+..=..|.+++
T Consensus 184 G~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 184 GIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred hHHHHHHHHHHHhcccchHHHHHhC
Confidence 4444445555666555555667664
|
The region concerned is approximately 280 residues long. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 389 | ||||
| 1pw4_A | 451 | Crystal Structure Of The Glycerol-3-Phosphate Trans | 3e-04 |
| >pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-52
Identities = 64/375 (17%), Positives = 129/375 (34%), Gaps = 16/375 (4%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWA--ADTSLLALLAMRAV 66
S Y S G++ D ++ + G+ L + + A +S+ + + +
Sbjct: 69 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128
Query: 67 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA-GIFGP 125
G +G+ P + W+ Q ER V++ G I +L + M+
Sbjct: 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 188
Query: 126 FVIFGLSGFLWVLVWLSATSSTPD--RHPQISKYELEYILREKQKPLLMGNKHKPATVIP 183
+ L L + TP P I +Y+ +Y +K + +
Sbjct: 189 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA-----EQELTAKQI 243
Query: 184 PFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAF 243
+ +L W I +AN + IL W P Y V H L ++SW +
Sbjct: 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303
Query: 244 TGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGM 303
L G +SD + + T + + + + A +P + + + +
Sbjct: 304 GTLLCGWMSDKVFRGNRGATGVFFMT----LVTIATIVYWMNPAGNPTVDMICMIVIGFL 359
Query: 304 KSFSHSGFLVNLQEIAP-QYSGVLHGISNTAG-TFAAILGTVGAGFFVELVGSFQGFLLL 361
++ E+AP + +G G + G ++ + G+ V+ G GF+++
Sbjct: 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 419
Query: 362 TSLLYFLSALFYIIF 376
L ++
Sbjct: 420 IGGSILAVILLIVVM 434
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 49/355 (13%), Positives = 107/355 (30%), Gaps = 51/355 (14%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
++L Y VS + G + D G + ++ G++++ LAT + +SL L+A A+ G
Sbjct: 42 GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQG 99
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG---IFGP 125
+ GV + + +T+ A ++ G + ++ +L + +
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159
Query: 126 FVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPF 185
++ + W+ T ++ +
Sbjct: 160 LLVLCAGVTFSMARWMPETRPVDAPRTRLLT---------------------------SY 192
Query: 186 RRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTG 245
+ L ++ G + + V + S +P
Sbjct: 193 KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAF--- 249
Query: 246 YLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKS 305
G + +R +++ I +A + + + + W L
Sbjct: 250 -FGAWFAGRPNKRFSTLMW-------QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF 301
Query: 306 FSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTV---GAGFFVELVGSFQG 357
F +G L SG + AGT A++G + G+G L
Sbjct: 302 FFGAGML-----FPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 93/255 (36%)
Query: 48 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARW-------FPQTERARAVAIAMG 100
L T+ L ++ +AE ++ + +A W + ++
Sbjct: 318 LPREVLTTNPRRL-SI-----IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLN-- 364
Query: 101 GFTSGNAIGLVLSPILMSQAGIFGPFVIF--------GLSGFLW---------VLVWLSA 143
VL P + +F +F L +W V+V
Sbjct: 365 ----------VLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 144 TSSTPDRHPQISKYELEYI-LREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANA 202
S ++ P+ S + I L K K H R ++ +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYN-----IPKT 458
Query: 203 MHSWGFFVILSWMPIYFNFVYHI-----------------DLRQASWFSA------VPWS 239
S Y + +H+ D R + W+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWN 515
Query: 240 VMAFTGYLGGLLSDM 254
+G + L +
Sbjct: 516 A---SGSILNTLQQL 527
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.57 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.54 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.52 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.49 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.44 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.39 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.12 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=309.95 Aligned_cols=362 Identities=17% Similarity=0.202 Sum_probs=279.2
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh----hcccchHHHHHHHHHhhhhhccchh
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~r~l~G~~~~~~~~ 76 (389)
++++|++.+++.++..++++++|+++||+|||+++..+..+.+++.+++++ + +|++.++++|+++|++.+...+
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccc
Confidence 367899999999999999999999999999999999999999999999999 8 9999999999999999999999
Q ss_pred hhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccC-cchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 77 AMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 77 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
...+++.|++|+++|++++++.+...++|..++|.+++.+.+..| ||+.|++.+++.++..++.++..||+|++.+..+
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP 218 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC
Confidence 999999999999999999999999999999999999999888888 9999999999888877777676677665432221
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSA 235 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 235 (389)
+++.+...+. +.+.+++++........++.+|+|+++...+..++..........+.|.|+++.+|+++.+.+.+.+
T Consensus 219 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 295 (451)
T 1pw4_A 219 IEEYKNDYPD---DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF 295 (451)
T ss_dssp CTTTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHH
T ss_pred hhhhcccccc---cchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1110000000 0000000011111112578899999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHcCCchhhHHHHHHHHHhhHHH-HHHHHHhhcc--chhhHHHHHHHHHhhhhccccc
Q 016442 236 VPWSVMAFTGYLGGLLSDML--IQRGTSVTLTRKILQSIGFIAPG-IALIGLTAAK--SPVMASAWLTLAIGMKSFSHSG 310 (389)
Q Consensus 236 ~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 310 (389)
...++.+++.++.+++.||+ ++| .....+..... ..+......+ +.+......++.........+.
T Consensus 296 ~~~~~~~~~~~~~g~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 366 (451)
T 1pw4_A 296 LYEYAGIPGTLLCGWMSDKVFRGNR---------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVML 366 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCH---------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHH
Confidence 99999999999999999998 766 22222222222 3333333322 3333332222222222333344
Q ss_pred cchhhhcccc-cchhHHHHHHHHHhhh-hhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016442 311 FLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFS 377 (389)
Q Consensus 311 ~~~~~~~~~~-~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 377 (389)
...+..+..| ++|+++.|+.+...++ |..++|.+.|.+.|..| +...|++.+++.+++.+.....+
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776 7899999999999999 99999999999999987 88888888888777776665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=294.47 Aligned_cols=335 Identities=15% Similarity=0.088 Sum_probs=267.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHh---hhhcccchHHHHHHHHHhhhhhccchhhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
+|+|++.+.+.++..++++++|+++||+|||+++..+..+.+++.+++ .++ +|++.+++.|+++|++.+...+..
T Consensus 61 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 61 FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhH
Confidence 467999999999999999999999999999999999999999999999 888 999999999999999999999999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhh-cccC-------------------------cchhHHHHhhH
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQAG-------------------------IFGPFVIFGLS 132 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~-------------------------w~~~f~~~~~~ 132 (389)
.++++|++|+|+|++++++.+...++|..++|.+++.+. +..+ ||+.|++.+.+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 218 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 5554 99999888877
Q ss_pred HHHHHHHHHHhc-cCCCCCCCcCcHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 016442 133 GFLWVLVWLSAT-SSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVI 211 (389)
Q Consensus 133 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (389)
.++..+..++.. ||++++.+ +++++++.+.++++++|+|+++...+..++........
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T 3o7q_A 219 VLLVALLIMLTKFPALQSDNH---------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTAC 277 (438)
T ss_dssp HHHHHHHHHHCCCCCCTTTCC---------------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccccc---------------------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 766655544432 22221110 11222344567889999999999999999988889999
Q ss_pred HHhhhHH-HHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccch
Q 016442 212 LSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP 290 (389)
Q Consensus 212 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (389)
..+.|.| +++.+|+++.+.+...+...++..++.++.+++.||+++| .....+.....+..+.....++.
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---------KVLAAYALIAMALCLISAFAGGH 348 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999 8887799999999999999999999999999999999988 33344444444444444444544
Q ss_pred hhHHHHHHHHHhhhhccccccchhhhcccccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 016442 291 VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSA 370 (389)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 370 (389)
.......+.+.+. +...+....+..|..|++++++.++.. ...++..++|.+.|++.|..|++...|.+.+++.++..
T Consensus 349 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 349 VGLIALTLCSAFM-SIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444444444433 334455566656666655888888877 77899999999999999998767777776655544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=280.34 Aligned_cols=327 Identities=13% Similarity=0.084 Sum_probs=261.7
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNM 81 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 81 (389)
++.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++..++ +|++.+++.|+++|++.+...+...++
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~ 112 (375)
T 2gfp_A 35 GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLIAASAMQGMGTGVGGVMARTL 112 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 467889999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHHHHHH
Q 016442 82 VARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEY 161 (389)
Q Consensus 82 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
+.|++|+|+|++++++.+...++|..++|.+++.+.++.+||+.|++.++..++..+...+..||+++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 184 (375)
T 2gfp_A 113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP-------- 184 (375)
T ss_dssp HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--------
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--------
Confidence 999999999999999999999999999999999999988999999998888777665444445554432210
Q ss_pred HHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHH
Q 016442 162 ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVM 241 (389)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (389)
+++.++++++.+|+|+++...+..++..........+.|.|+++.+|.++.+.+.......++.
T Consensus 185 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 248 (375)
T 2gfp_A 185 ----------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAA 248 (375)
T ss_dssp ----------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ----------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1122335567888999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHh-hHHHHH--HHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcc
Q 016442 242 AFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGF-IAPGIA--LIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEI 318 (389)
Q Consensus 242 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (389)
.++.++.+++.||.+++ ....... ...+.. .......++.+......++.....+...+....+..|.
T Consensus 249 ~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 319 (375)
T 2gfp_A 249 FFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEP 319 (375)
T ss_dssp HHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999874 2212111 111111 11111112333333333333333345566667777787
Q ss_pred cccchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHH
Q 016442 319 APQYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSL 364 (389)
Q Consensus 319 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 364 (389)
.|++|+++.|+.+...++|..++|.+.|.+.|..+ +...+...++
T Consensus 320 ~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~~ 364 (375)
T 2gfp_A 320 FPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHH
Confidence 78999999999999999999999999999988765 7766665433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=273.71 Aligned_cols=371 Identities=15% Similarity=0.106 Sum_probs=247.2
Q ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhh------------------hcccchHHHHHHH
Q 016442 3 GADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW------------------AADTSLLALLAMR 64 (389)
Q Consensus 3 ~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~r 64 (389)
+.|++.+++.+|..++++++|+++||+|||+++.++.+++.++++++++ + +|++.++++|
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R 133 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999884 5 8999999999
Q ss_pred HHhhhhhccchhhhHHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc--------cCcchhHHHHhhHHHHH
Q 016442 65 AVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLW 136 (389)
Q Consensus 65 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~--------~~w~~~f~~~~~~~~~~ 136 (389)
+++|++.|...+..+.+++|+.|+++|++..++.+.+...|..+++.++..+... .+||+.+.+..+..++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999988776543 24777777666666554
Q ss_pred HHHHHHhccCCCCCC-CcCcHHHHHHHHHhcCCcccc-------CCCCCCCCCchhHHHhhcchhHHHHHHHHHHH-HHH
Q 016442 137 VLVWLSATSSTPDRH-PQISKYELEYILREKQKPLLM-------GNKHKPATVIPPFRRLLSKMPTWSIIVANAMH-SWG 207 (389)
Q Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 207 (389)
. ...+..||+|+.. .+.++++.++..++...+... ++..++++........++.++.........+. ..+
T Consensus 214 ~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
T 4gc0_A 214 L-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVG 292 (491)
T ss_dssp H-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTC
T ss_pred h-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhh
Confidence 4 4445567776532 122222222211111100000 00000000011112233344444433333333 334
Q ss_pred HHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHH---
Q 016442 208 FFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGL--- 284 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 284 (389)
.+.+..+.|.+.++ .+.+..+........++...++.++.+++.||+||| .....+.....+.+..+
T Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr---------~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 293 INVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc---------chhccchHHHHHHHHHHHHH
Confidence 55666666666665 677777777777788888999999999999999999 22222222222222211
Q ss_pred -hhccchhhHHHH-HHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhh-----hHH
Q 016442 285 -TAAKSPVMASAW-LTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVG-----SFQ 356 (389)
Q Consensus 285 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~ 356 (389)
............ .+...++.....+..+.+..|++| +.|+++.|+.+..+++++.+++.+.+.+.+... ...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~ 442 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG 442 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 122222222222 223333333444566788999998 899999999999999999999999888765422 123
Q ss_pred HHHHHHHHHHHHHHH-HHHHhccCCcccccc
Q 016442 357 GFLLLTSLLYFLSAL-FYIIFSTGERVNFDE 386 (389)
Q Consensus 357 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 386 (389)
..|++.+++++++.+ .+++++|+|.++.||
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 445566666555554 455667777666543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=270.21 Aligned_cols=367 Identities=14% Similarity=0.131 Sum_probs=252.4
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhh-cCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 80 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 80 (389)
++.|++.+.+.++..++++++|+++|| +|||+++..+..+.+++.++++++ +|++.+++.|+++|++.+...+...+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 54 ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhccchHHH
Confidence 367889999999999999999999999 899999999999999999999999 99999999999999999999999999
Q ss_pred HHhcccCcCc--hhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCC-----Cc
Q 016442 81 MVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-----PQ 153 (389)
Q Consensus 81 ~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 153 (389)
+++|++|+++ |++++++++...++|..++|.+++.+.++.|||+.|++.++..++..+......++..++. ++
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDP 211 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCC
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCc
Confidence 9999999988 7788999999999999999999999999999999999988777766655554433322111 11
Q ss_pred CcHHHHHHHHHhc----------------CCccccCCC-----------------CCCCCCchhHHHhhcchhHHHHHHH
Q 016442 154 ISKYELEYILREK----------------QKPLLMGNK-----------------HKPATVIPPFRRLLSKMPTWSIIVA 200 (389)
Q Consensus 154 ~~~~~~~~~~~~~----------------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (389)
.++++.++..+.. .+..+.++. ...++...+.++..+....+...+.
T Consensus 212 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 212 LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 1122222211110 000000000 0000000000111122334555555
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHH
Q 016442 201 NAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIA 280 (389)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (389)
.++....+.....++|.|.++..+.+..+.+.......+...++.++.+++.||++||+.... ..+..+....+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~----~~~~~~~~~~~~~ 367 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP----TKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHH
Confidence 666666666777888899998778887888998999999999999999999999998853221 1112233333332
Q ss_pred HHHHhh---------ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHh
Q 016442 281 LIGLTA---------AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVE 350 (389)
Q Consensus 281 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 350 (389)
...... ..+.+......++.....+...+....+..|..| +.|+++.|+.+...++|..++|.+.+.+.|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222211 1133333333333333334445556667777777 789999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 351 LVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 351 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
. + +...|...+++.+++.+..+..
T Consensus 448 ~-~-~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 448 K-S-EVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp S-S-TTHHHHHTHHHHHHHHHHHHHC
T ss_pred c-c-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6 3 5566666666666655554444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=252.22 Aligned_cols=347 Identities=15% Similarity=0.106 Sum_probs=231.9
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHH---HHhhhhcccch-HHHHHHHHHhhhhhccchh
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAADTSL-LALLAMRAVVGLAEGVALP 76 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~ 76 (389)
++|.|++.+.+.++..++++++|+++||+|||+++..+..+.+++. ....+. +.. ..+...+.+.|++.+...+
T Consensus 42 ~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~ 119 (417)
T 2cfq_A 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILVGSIVGGIYLGFCFN 119 (417)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCHHHHGGGSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999888775532 112222 221 1234556666666655555
Q ss_pred hhHHHHhcccCc--CchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcC
Q 016442 77 AMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQI 154 (389)
Q Consensus 77 ~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (389)
.....+.++.++ ++|+...+......++|..++|.+++++.+ .+||+.|++.++..++..+..+..+||++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~- 197 (417)
T 2cfq_A 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATV- 197 (417)
T ss_dssp TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCS-
T ss_pred hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccccccc-
Confidence 555555555543 456777888989999999999999999887 5899999988777655444433333333221100
Q ss_pred cHHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc---cccchhh
Q 016442 155 SKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH---IDLRQAS 231 (389)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~ 231 (389)
+ + .+++++++....++++++|+|+++...+..+.....+.....++|.|+++.++ .+....+
T Consensus 198 ~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (417)
T 2cfq_A 198 A--N-------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262 (417)
T ss_dssp S--S-------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH
T ss_pred c--c-------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHH
Confidence 0 0 00011112233456788999998877766565555666666778888876544 2344557
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhcccccc
Q 016442 232 WFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGF 311 (389)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (389)
...+...++.+++.++.+++.||++|| .....+....++........++.+.......+.........+..
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788889999999999999988 33334444444444444444443333222222121222222334
Q ss_pred chhhhcccc-cchhHHHHH-HHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 312 LVNLQEIAP-QYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 312 ~~~~~~~~~-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
..+..|..| +.||++.++ .+...++|+.++|.+.|++.|..| +...|.+.+++.+++.+..+..
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhh
Confidence 567778777 799999999 488889999999999999999887 8888888888877776655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=233.30 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=128.1
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhc-CCeehhHHHHHHHHHHHHHhhhhccc-chHHHHHHHHHhhhhhccchhhhH
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFLTPWAADT-SLLALLAMRAVVGLAEGVALPAMN 79 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~ 79 (389)
++.|++.+++.++..++.+++|+++||+ |||+++..+..+.+++.+++.++ + +++.+++.|+++|++.+...+...
T Consensus 54 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 54 AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHH
Confidence 5678999999999999999999999999 99999999999999999999998 8 999999999999999999999999
Q ss_pred HHHhcccCcCchhhHHHH---HHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHh
Q 016442 80 NMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSA 143 (389)
Q Consensus 80 ~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 143 (389)
+++.|++|+++|+++.+. .+...++|..++|.+++.+.+..|||+.|++.++..++..+.....
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999876666 9999999999999999999998999999999888777665555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=127.46 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=136.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----hccccchhhhhhhHHHHHHHHHHHHHHHHHHH-HHHcCCchhhH
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFV-----YHIDLRQASWFSAVPWSVMAFTGYLGGLLSDM-LIQRGTSVTLT 265 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~ 265 (389)
+.++......++....++....+++.|+++. +|.++.+.+++.+...++..++.++.|+++|| +|||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------- 85 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------- 85 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence 4566777788888888999999999999998 89999999999999999999999999999999 8998
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cc--hhHHHHHHHHHhhhhhhHHh
Q 016442 266 RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QY--SGVLHGISNTAGTFAAILGT 342 (389)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~g~~~~~~~~g~~~~~ 342 (389)
..+..+.....+........++.+......++.+...+...+....+..|..| ++ |+.+.+..+...++|..++|
T Consensus 86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 86 --PAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544444444444455666777777766 66 78888989999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 343 VGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 343 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.+.+.+.+..| +...|.+.++..+++.+.....
T Consensus 164 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 164 LIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887 8899888877777666655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-13 Score=124.25 Aligned_cols=173 Identities=11% Similarity=0.027 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q 016442 194 TWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIG 273 (389)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 273 (389)
+....+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|+++||+||| ..+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~l~~~ 97 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch---------HHHHHH
Confidence 3344555555566666677777775555 899999999999999999999999999999999999 344444
Q ss_pred hhHHHHHHHHH---hhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHH
Q 016442 274 FIAPGIALIGL---TAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFV 349 (389)
Q Consensus 274 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 349 (389)
....++..+.. ...++.+.....-++.+...+...+....+..|..| |+|+++.++.+....+|..++|.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 445555555554444444444555566777788777 89999999999999999999999999998
Q ss_pred -hhhhh------------------------HHHHHHHHHHHHHHHHHHHHHh
Q 016442 350 -ELVGS------------------------FQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 350 -~~~g~------------------------~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
+..+. +...|...++..++..+.....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 6777776666655555544443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=125.73 Aligned_cols=174 Identities=13% Similarity=0.028 Sum_probs=127.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q 016442 191 KMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQ 270 (389)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 270 (389)
.+.+....+..+........+....|.+.++ + .++.+.+++.+...++..++.++.|+++||+||| ..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~l 95 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR---------VFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch---------HHH
Confidence 3445555666666666666677788877777 6 8999999999999999999999999999999999 344
Q ss_pred HHHhhHHHHHHHHHhh----ccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHH
Q 016442 271 SIGFIAPGIALIGLTA----AKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGA 345 (389)
Q Consensus 271 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~ 345 (389)
..+.+..++..+.... .++.+..+..-++.+...+...+....+..|..| ++|+++.|+.+....+|..++|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444 4555554444444444444555666777788777 8999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 346 GFFVELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 346 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
+++.+..|+++..|++.+++.++..+....
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 998887754777888777776655544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=126.35 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc------cccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHcCCchhh
Q 016442 192 MPTWSIIVANAMHSWGFFVILSWMPIYFNFVYH------IDLRQASWFSAVPWSVMAFTGYLGGLLSDML-IQRGTSVTL 264 (389)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~ 264 (389)
|.++...+..++...+++....+++.|+++++| +++.+.+++.+...++..++.++.|+++||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 456667778888888888999999999998889 9999999999999999999999999999999 988
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcc-chhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHH---HHHHhhhhhh
Q 016442 265 TRKILQSIGFIAPGIALIGLTAAK-SPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGI---SNTAGTFAAI 339 (389)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~---~~~~~~~g~~ 339 (389)
.....+.+...+..+.....+ +.+......++.+...+...+....+..|..| ++|+++.+. .+...++|..
T Consensus 86 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 86 ---NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444 44444444333333344455666677777776 788766665 8899999999
Q ss_pred HHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016442 340 LGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYII 375 (389)
Q Consensus 340 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (389)
++|.+.+.+.+..| +...|.+.+++.+++.+....
T Consensus 163 ~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 163 FASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877 888888887777666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-14 Score=126.15 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=120.5
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
|+..+...++..++.++.|+++||+|||+++..+..+.+++.+..++. ++.+.+++..++.+++.+...+....+++|
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777888899999999999999999999998888887777777 788888888888888877777778899999
Q ss_pred ccCcCchhhHHHH-HHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCC
Q 016442 85 WFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 148 (389)
Q Consensus 85 ~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 148 (389)
.+|++.|+.+.+. ++....+|..++|.+++.+.++.|++..|.+.+++.++..+..+...+|++
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999 588888999999999999998888899999888888777666665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-13 Score=120.15 Aligned_cols=165 Identities=8% Similarity=-0.009 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhh
Q 016442 196 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI 275 (389)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 275 (389)
...+..++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+... .+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---------~~~~ 73 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL---------VGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH---------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH---------HHHH
Confidence 34556666666777777788877665 8999999999999999999999999999999999985432 2222
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhh
Q 016442 276 APGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGS 354 (389)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 354 (389)
...+........++.+......++.....+...+....+..|..| |+|+++.+..+....+|..++|.+.+.+.+..|
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 152 (375)
T 2gfp_A 74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-
Confidence 333333333333444444444444333444455566677777766 899999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016442 355 FQGFLLLTSLLYFLSAL 371 (389)
Q Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (389)
++..+.+.++..++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 153 WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877776665554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-10 Score=103.31 Aligned_cols=143 Identities=20% Similarity=0.122 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc--c-cchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 8 PSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--D-TSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 8 ~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
.....+...++.++.+.+.||+|||+.++.+.....++.+..+... . ++...+...-+..+.......+....+.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 397 (491)
T 4gc0_A 318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 397 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455667788889999999999999999999888888776654331 1 122222222222222223345677899999
Q ss_pred ccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhc------ccCcchhHHHHhhHHHHHHHHHHHhccCCCCC
Q 016442 85 WFPQTERARAVAIAMGGFTSGNAIGLVLSPILMS------QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDR 150 (389)
Q Consensus 85 ~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 150 (389)
.+|.+.|++++|+......+|..+++.+.+.+.+ ..++.+.|++.+.++++..+..+++.||.+.+
T Consensus 398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 9999999999999999999999998887765533 34677888999999988888888888877544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 389 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-14 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.003 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 71.2 bits (173), Expect = 3e-14
Identities = 63/377 (16%), Positives = 130/377 (34%), Gaps = 10/377 (2%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPW--AADTSLLALLAMRAV 66
S Y S G++ D ++ + G+ L + + A +S+ + + +
Sbjct: 66 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 125
Query: 67 VGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPF 126
G +G+ P + W+ Q ER V++ G I +L + M+ +
Sbjct: 126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 185
Query: 127 VIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFR 186
+ F +LV L A + D +E + + + +
Sbjct: 186 LYMP--AFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQ 243
Query: 187 RLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGY 246
+L W I +AN + IL W P Y V H L ++SW +
Sbjct: 244 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 303
Query: 247 LGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSF 306
L G +SD + + T + + + + + A +P + + + +
Sbjct: 304 LCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 359
Query: 307 SHSGFLVNLQEIAP-QYSGVLHGISNTAGTF-AAILGTVGAGFFVELVGSFQGFLLLTSL 364
++ E+AP + +G G + G ++ + G+ V+ G GF+++
Sbjct: 360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 419
Query: 365 LYFLSALFYIIFSTGER 381
L ++ +R
Sbjct: 420 SILAVILLIVVMIGEKR 436
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.003
Identities = 37/370 (10%), Positives = 84/370 (22%), Gaps = 19/370 (5%)
Query: 9 SSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVG 68
++ L+ G L D G + + W + + LL + +
Sbjct: 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109
Query: 69 LAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVI 128
+ A + +R G +G L ++ +
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV 169
Query: 129 FGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRL 188
F L +++ + + D P + F
Sbjct: 170 FWLGSGCALILAVLLFFAKTDA------------------PSSATVANAVGANHSAFSLK 211
Query: 189 LSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLG 248
L+ + + + + + G L
Sbjct: 212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELL 271
Query: 249 GLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSH 308
+ + L G I + A + + +
Sbjct: 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331
Query: 309 SGFLVNLQEIAPQYSGVLHGI-SNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYF 367
F + ++S ++ + A I +V AG E +G +L+L +
Sbjct: 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391
Query: 368 LSALFYIIFS 377
+ + S
Sbjct: 392 FTLISVFTLS 401
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 389 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.49 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-40 Score=298.93 Aligned_cols=366 Identities=17% Similarity=0.199 Sum_probs=272.8
Q ss_pred CCcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHHhhhhhccchhhh
Q 016442 1 MAGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA--DTSLLALLAMRAVVGLAEGVALPAM 78 (389)
Q Consensus 1 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~ 78 (389)
++|+|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++. .++++.+++.|++.|++.+...+..
T Consensus 58 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (447)
T d1pw4a_ 58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137 (447)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHH
Confidence 47899999999999999999999999999999999999999999998887652 2578999999999999999999999
Q ss_pred HHHHhcccCcCchhhHHHHHHhhhhhhhhhhhhhhhHhhcc-cCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCcHH
Q 016442 79 NNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQ-AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKY 157 (389)
Q Consensus 79 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (389)
.+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+.+.++..+..+...+++|++.+..+.+
T Consensus 138 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (447)
T d1pw4a_ 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 217 (447)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh
Confidence 99999999999999999999999999999999998887665 47999999999988888888888877776654332222
Q ss_pred HHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccchhhhhhhHH
Q 016442 158 ELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVP 237 (389)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 237 (389)
+.+....+ ...++.+++........++.+++|.++......++.....+....+.|.|+++..+.+..+.+......
T Consensus 218 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 218 EYKNDYPD---DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp TTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred hhhhhccc---chhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence 21110000 000111222233344567888999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHh--hccchhhHHHHHHHHHhhhhccccccchhh
Q 016442 238 WSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLT--AAKSPVMASAWLTLAIGMKSFSHSGFLVNL 315 (389)
Q Consensus 238 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (389)
.+..+++.++.+++.||.++++.. .................. ...+.+......+..........+....+.
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 368 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRG------ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA 368 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHH------HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhccccccc------cccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877321 111222222222222222 222333333333332222333344556667
Q ss_pred hcccc-cchhHHHHHHHHHhhhh-hhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016442 316 QEIAP-QYSGVLHGISNTAGTFA-AILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIF 376 (389)
Q Consensus 316 ~~~~~-~~~g~~~g~~~~~~~~g-~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 376 (389)
.|..| +.||++.|+.+...+++ ..++|.+.|++.|..| +...+.+.+++.+++.++....
T Consensus 369 ~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 369 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 78999999999998874 5678999999999998 6777776666666555544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.7e-28 Score=218.37 Aligned_cols=348 Identities=15% Similarity=0.063 Sum_probs=237.6
Q ss_pred CcCcchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHH----HHHHHHHhhhhhccchhh
Q 016442 2 AGADRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLA----LLAMRAVVGLAEGVALPA 77 (389)
Q Consensus 2 ~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~~~~~~~ 77 (389)
+|+|++.+++.++..++++++|+++||+|||++++++..+..++..+..+. ++... .+..+.+.+.+.+.....
T Consensus 43 ~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (417)
T d1pv7a_ 43 SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF--IFGPLLQYNILVGSIVGGIYLGFCFNA 120 (417)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH--THHHHHHTTCHHHHHHTTTTGGGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhcccccccc
Confidence 578999999999999999999999999999999999999999988888776 44433 456666666666655555
Q ss_pred hHHHHhcccCc--CchhhHHHHHHhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCCCCCCCcCc
Q 016442 78 MNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQIS 155 (389)
Q Consensus 78 ~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (389)
......+..++ +++.+..+........+..+++.+++.+.+. +|+..+........+..+...+..++++++.++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (417)
T d1pv7a_ 121 GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN 199 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH
T ss_pred hhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhh
Confidence 55555544433 3455677888888899999999999988764 56666666666666656666666565555443322
Q ss_pred HHHHHHHHHhcCCccccCCCCCCCCCchhHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHH---Hhccccchhhh
Q 016442 156 KYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIYFNF---VYHIDLRQASW 232 (389)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~ 232 (389)
+++ +++++......++..+++..+....................+.+... ..+.+....+.
T Consensus 200 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (417)
T d1pv7a_ 200 AVG----------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263 (417)
T ss_dssp HHH----------------SCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hhh----------------hhcccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcc
Confidence 221 22233333444455566655555444444444433333333333322 23445566677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhccchhhHHHHHHHHHhhhhccccccc
Q 016442 233 FSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFL 312 (389)
Q Consensus 233 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (389)
......++..++..+.+++.||.+++ .....+....+.........++.+......++.....+...+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhcccccc---------cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999988 445555566666666666666666555554444444445555666
Q ss_pred hhhhcccc-cchhHHHHHHH-HHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016442 313 VNLQEIAP-QYSGVLHGISN-TAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLLYFLSALFYIIFST 378 (389)
Q Consensus 313 ~~~~~~~~-~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (389)
.+.+|..| +.|+++.|+.. ....+|..++|.+.|++.|+.| +...+++.+++.++..++..+..+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777666 79999999864 5667999999999999999998 888888877777666655544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.6e-14 Score=125.92 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=127.0
Q ss_pred cchhHHHHHHHHHhhhhhhhhhhhcCCeehhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhccchhhhHHHHhc
Q 016442 5 DRFPSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVAR 84 (389)
Q Consensus 5 g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 84 (389)
+...+...++..++..+.+++.||+|+|+.+..+..+.+++.+...+. ++.+.+++..++.|++.+...+...+++.|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 339 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ccCcCchhhHHHHH-HhhhhhhhhhhhhhhhHhhcccCcchhHHHHhhHHHHHHHHHHHhccCC
Q 016442 85 WFPQTERARAVAIA-MGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSST 147 (389)
Q Consensus 85 ~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 147 (389)
.+|+|+|++..+.. +....+|..++|.+.|++.|+.||+..|++.+++.++..++..+..+++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999985 5677899999999999999999999999999988888777766665544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.6e-12 Score=116.81 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=108.5
Q ss_pred HHHhhhHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHhhHHHHHHHHHhhc---
Q 016442 211 ILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAA--- 287 (389)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 287 (389)
+....| +++| .|+|..+.|++.+...++..++.++.|+++||+||| .....+.+..++..+.....
T Consensus 44 ~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r---------~~~~~~~~~~~~~~~~~~~~~~~ 112 (447)
T d1pw4a_ 44 FALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR---------VFLPAGLILAAAVMLFMGFVPWA 112 (447)
T ss_dssp HHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHHHHHHHHhhccccchh
Confidence 333344 5566 799999999999999999999999999999999999 33344444444433333221
Q ss_pred -cchhhHHHHHHHHHhhhhccccccchhhhcccc-cchhHHHHHHHHHhhhhhhHHhHHHHHHHhhhhhHHHHHHHHHHH
Q 016442 288 -KSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAP-QYSGVLHGISNTAGTFAAILGTVGAGFFVELVGSFQGFLLLTSLL 365 (389)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 365 (389)
++.......-++.....+...+....+..|..| ++|++++|+.+....+|..++|.+.+.+.+..+++...+++.+.+
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 233333333333333334444555666667666 799999999999999999999999999888776677777777766
Q ss_pred HHHHHHHHHHh
Q 016442 366 YFLSALFYIIF 376 (389)
Q Consensus 366 ~~~~~~~~~~~ 376 (389)
.++..+..+..
T Consensus 193 ~~~~~~~~~~~ 203 (447)
T d1pw4a_ 193 AILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66555554444
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