Citrus Sinensis ID: 016443

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MWKIFLFLLLPIKQVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNLPKNVPY
Secondary Structure (PSIPRED)
ccEEccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHEHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHcHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccHHHHHHcccccHHHHccccccHHHHHccccccccccccccccEEEcccccccHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHcccccEEEccccccHHHHEHHHHcccccccccccccccccccccccccccccccEEEccccEEEcccccEEcHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccc
Coil and Loop (DISEMBL)
MWKIFLFLLLPikqvagvpgvTEALFLARQAALAQEknknatpmtyscglcgkgyrsSKALAQHLNSRShimrasqgtsneekekviikpiplrdvnkpprkreanneesedsddeweevgpdevLVSEATnsltnlnvgspadddleeddddgafeefdpaccfmcdlphdaiENCMVHMhkchgffipdveylkdpkglLTYLGLKvkrdfmclycndrchpfnsLEAVRKHMEAKRhckihfgdgddeeEAELEEFYdysssymdedgkqlisssdmantvelgggseliitkrtdkgtstktfgsreYLRYyrqkprpspannVAITAALASRYKsmglatvqTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNiirnlpknvpy
Flexible Loop (DISEMBL)
MWKIFLFLLLPIKQVAGVPGVTEALFLARQAALAqeknknatpmTYSCGLCGKGYRSSKALAQHLNSRSHImrasqgtsneekekviikpiplrdvnkpprkreanneesedsddeweeVGPDEVLVSeatnsltnlnvgspaddDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIhfgdgddeeeAELEEFYDYSSSYMDEDGKQLISSSDMANTVELgggseliitkrtdkgtstktfgsreylryyrqkprpspanNVAITAALASRYKSmglatvqtrehmVRMKVIKEmnrtgveamrtrvgmknniirnlpknvpy
Low Complexity Region (SEG)
MWKIFLFLLLPIKQVAGVPGVTEalflarqaalaqEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNeesedsddeweeVGPDEVLVSEATNSLTNLNVGSPadddleeddddgafeefdPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHfgdgddeeeaeleefydySSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNLPKNVPY
Disordered region (IsUnstruct)
*WKIFLFLLLPIKQVAGVPGVTEALFLARQAALAQE***NATPMTYSCGLCGKGY******************************************************************************************************EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFG*********************************************LII****************EYLRYY***********VAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVE**********************
Disordered Region (DISOPRED)
MWKIFLFLLLPIKQVAGVPGVTEALF*********************CGLCGKGYR***************************************************************VGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYM*******************GGGSELIITK******************************************************************************MKNNIIRNL******
Disordered Region (DISEMBL)
MWKIFLFLLLPIKQVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHI************EKVIIKPIPLRDVNK**********************GPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNLPKNVPY
Disordered Region (DISPRO)
MWKIFLFLLLPIKQVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSN****************************************************************************EEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSY********************GGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNLPKNVP*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWKIFLFLLLPIKQVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNLPKNVPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
Q91VY9	476	Zinc finger protein 622 O	yes	no	0.915	0.747	0.268	7e-27
Q969S3	477	Zinc finger protein 622 O	yes	no	0.526	0.429	0.350	2e-24
Q7TM96	386	Zinc finger protein 622 O	no	no	0.262	0.264	0.476	2e-20
Q90Y35	405	Zinc finger protein 622 O	yes	no	0.311	0.298	0.418	7e-20
O59811	463	Zinc finger protein C550.	yes	no	0.632	0.531	0.264	1e-19
P38344	393	Pre-60S factor REI1 OS=Sa	yes	no	0.449	0.445	0.305	1e-15
Q06709	432	Zinc finger protein REH1	no	no	0.519	0.467	0.284	2e-11

>sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 183/450 (40%), Gaps = 94/450 (20%)

Query: 13  KQVAGVPGVTEALFLAR---QAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRS 69
           ++VA +  VT   F  R   Q A+A+    +    TY C  CGK + +  A   HL SR 
Sbjct: 34  RKVAAMAPVTAEGFQERVRAQRAVAEAAEASKGAATY-CTACGKKFATFNAYENHLGSRR 92

Query: 70  H----------------------------------------IMRASQGTSNEEKEKVIIK 89
           H                                        I +A +   +   +K    
Sbjct: 93  HAELERKAVRAASRRVELLNAKNLEKGLGADGVDKDAVNAAIQQAIKAQPSTSPKKAPFV 152

Query: 90  P-------------IPLRD-VNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLT 135
           P             +P RD   KPPR +    +  + +  +WE+   +     E      
Sbjct: 153 PTDECGRAAAGARGVPERDPTEKPPRLQWFEQQAKKLAKQQWEDGEEEGEEEEEDDEDED 212

Query: 136 --------NLNVGSPADDDLEEDDDDGAFEEFDPAC------CFMCDLPHDAIENCMVHM 181
                    L    P  +D  +D +D A EE  P        C  C     ++   + HM
Sbjct: 213 WEDIDSDDGLECEDPGVED--QDAEDAAAEESPPLGAIPITDCLFCSHHSSSLVKNVAHM 270

Query: 182 HKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHC 241
            K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++   F S EAV+ HM  K HC
Sbjct: 271 TKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHC 330

Query: 242 KIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVEL----GGGSELIITKR 297
           K+ F DGD     E  +FYD+ SSY D    Q  +  +  +T ++        ELI+   
Sbjct: 331 KL-FTDGD--AALEFADFYDFRSSYPDYKEGQDPAELEALSTDKILECDDETMELIL--- 384

Query: 298 TDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALASRYKSMGLATVQTREHMV 353
                S    G R  +RYY+Q+   PR  + A N      +  +Y+++G     T   ++
Sbjct: 385 ----PSGARVGHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQQYRALGWMG-STGAALM 439

Query: 354 RMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
           R + ++ + R   + M  ++GMKNN  + +
Sbjct: 440 RERDMQYVQRMKSKWM-LKIGMKNNATKQM 468

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.
Mus musculus (taxid: 10090)

>sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 26/231 (11%)

Query: 164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
           C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct: 254 CLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGK 313

Query: 224 PFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMD----ED---GKQLIS 276
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ SSY D    ED    ++L S
Sbjct: 314 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRSSYPDHKEGEDPNKAEELPS 370

Query: 277 SSDMANTVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVA----ITA 332
             ++    E     ELI+        S    G R  +RYY+Q+   S A  VA       
Sbjct: 371 EKNLEYDDET---MELIL-------PSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVG 420

Query: 333 ALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
            +  +Y+++G  T  T   ++R + ++ + R   + M  + GMKNN  + +
Sbjct: 421 RVLQQYRALGW-TGSTGAALMRERDMQYVQRMKSKWM-LKTGMKNNATKQM 469

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Homo sapiens (taxid: 9606)

>sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=2 SV=2

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
           C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct: 247 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 306

Query: 224 PFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMD 268
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ SSY D
Sbjct: 307 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRSSYPD 348

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Rattus norvegicus (taxid: 10116)

>sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 8/129 (6%)

Query: 164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
           C  C      +   + HM K H FFIPD+EYL D +GL+ YLG K+    +C++CN++  
Sbjct: 246 CLFCSHHSRTLMKNVAHMTKVHSFFIPDIEYLVDLRGLIKYLGEKIGVGKICIWCNEKGK 305

Query: 224 PFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANT 283
            F S EAV+ HM  K HCK+ F DGD     E  +FYD+ SSY D    Q     DM   
Sbjct: 306 SFYSTEAVQAHMNDKSHCKL-FTDGD--AALEFADFYDFRSSYPDHKEGQ-----DMEVP 357

Query: 284 VELGGGSEL 292
            EL    EL
Sbjct: 358 AELPSDREL 366

May behave as an activator of the bound transcription factor, MYBL2, and be involved in embryonic development.

Gallus gallus (taxid: 9031)

>sp|O59811|YJVF_SCHPO Zinc finger protein C550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 125/295 (42%), Gaps = 49/295 (16%)

Query: 13  KQVAGVPGVTEALFLARQAALAQ--EKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSH 70
           ++VA +P ++  +F  +  ++ +  E+ +       +C +C K + S  A + H+ S+ H
Sbjct: 35  RKVASLPPLSAEVFAGKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHMASKKH 94

Query: 71  IMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEA 130
               S+   N       IK +   D +       +  E   DS     E+  +E L S+ 
Sbjct: 95  RDNLSKFQRNSR-----IKKLQSEDASSIASSTLSMGEPVVDS-----EIEEEEDLASQL 144

Query: 131 TN---SLTNLNV-----------------------------GSPADDDLEEDDDDGAFEE 158
           T+   SL+NL++                               P  +++E +    + + 
Sbjct: 145 TSRAISLSNLSLHGRESEPSKTELATSIPQSNEASKSHLFTQEPTPEEIEAELARRSSQR 204

Query: 159 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYC 218
             P  C  C     + + C  HM   H  +IP+ EYL D   L  YL  K+   F CL C
Sbjct: 205 LSPRDCLFCAASFSSFDTCKKHMKASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTC 264

Query: 219 NDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQ 273
           N     F SLEAVR HM+ K H  I +   D  E+ EL +FYD+++SY D   KQ
Sbjct: 265 N---REFKSLEAVRAHMQQKGHTSIAYDTED--EQLELSDFYDFTTSYPDYAVKQ 314

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38344|REI1_YEAST Pre-60S factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REI1 PE=1 SV=3

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 38/213 (17%)

Query: 164 CFMCDLPHDA----IENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCN 219
           C  C+  H+     +E  + HM + HGF+IP+ +YL D  GL+ Y+  K+    +C+ CN
Sbjct: 164 CLFCE--HNKHFKDVEENLEHMFRTHGFYIPEQKYLVDKIGLVKYMSEKIGLGNICIVCN 221

Query: 220 DRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYM---------DED 270
              +   +L AVR+HM AKRHCKI +   D  E  E+ EFYD++SSY          +ED
Sbjct: 222 ---YQGRTLTAVRQHMLAKRHCKIPYESED--ERLEISEFYDFTSSYANFNSNTTPDNED 276

Query: 271 GKQLISS-------SDMANTVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRP- 322
             + + S        D+        G EL +       T  K  G R   RYY+Q  +P 
Sbjct: 277 DWEDVGSDEAGSDDEDLPQEYLYNDGIELHLP------TGIKV-GHRSLQRYYKQDLKPE 329

Query: 323 ---SPANNVAITAALASRYKSMGLATVQTREHM 352
              +      + A   S   +     VQT++ +
Sbjct: 330 VILTEGQGTLVAAETRSFLPAFDKKGVQTQQRV 362

Pre-60S-associated cytoplasmic factor invoved in the dissociation and recycling of other late pre-60S factors like ARX1, TIF6 and ALB1 before newly synthesized large ribosomal subunits enter translation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q06709|REH1_YEAST Zinc finger protein REH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REH1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 48/250 (19%)

Query: 146 DLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYL 205
           D+ +   D   E+     C  C   +  +E  + HM   HG FIP+  YL D  GLL +L
Sbjct: 170 DIADKPSDKENEKITITECIYCGKDNKEVERNVKHMFSEHGLFIPERSYLIDLNGLLEFL 229

Query: 206 GLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDY--- 262
              +  D  CL CN      + LE++R HM +KRHC++ +     EE      FYD+   
Sbjct: 230 IKMIVIDHNCLCCN---FHGSGLESIRAHMASKRHCRLPY--ETKEERQLFAPFYDFTYD 284

Query: 263 ------------------SSSYM----DEDGK---QLISSSDMAN----TVELG-GGSEL 292
                             SS Y     +EDG+    L+SS +  N    TV +   G EL
Sbjct: 285 DHSISKNLQNDRAITSKLSSVYGAKNDEEDGEVDITLVSSENDINANYTTVSIDESGLEL 344

Query: 293 IITKRTDKGTSTKTFGSREYLRYYRQK--PRPSPANNVAITAALASRYKSMGLATVQTRE 350
            +        +    G R   RYYRQ    +P+P N    T   A R    G+   Q ++
Sbjct: 345 TL-------PTGARLGHRAGQRYYRQNLPSQPNP-NESRRTITAADRRMVSGVTEKQYKK 396

Query: 351 HMVRMKVIKE 360
            M +M+ +++
Sbjct: 397 GMKKMQQLEK 406

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
225429787	411	PREDICTED: zinc finger protein 622 [Viti	0.961	0.909	0.716	1e-151
255574095	407	transcription factor, putative [Ricinus	0.956	0.914	0.749	1e-149
302398699	405	C2H2L domain class transcription factor	0.951	0.913	0.746	1e-146
356563786	407	PREDICTED: zinc finger protein 622-like	0.956	0.914	0.712	1e-145
296081767	376	unnamed protein product [Vitis vinifera]	0.874	0.904	0.673	1e-144
356539178	407	PREDICTED: zinc finger protein 622-like	0.956	0.914	0.715	1e-143
356563788	407	PREDICTED: zinc finger protein 622-like	0.956	0.914	0.712	1e-142
388507466	410	unknown [Lotus japonicus]	0.964	0.914	0.693	1e-141
388508652	410	unknown [Lotus japonicus]	0.964	0.914	0.691	1e-140
356539180	407	PREDICTED: zinc finger protein 622-like	0.958	0.916	0.698	1e-135

>gi|225429787|ref|XP_002282746.1| PREDICTED: zinc finger protein 622 [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 273/381 (71%), Positives = 317/381 (83%), Gaps = 7/381 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           +++AGVPGVTEAL+LARQ++LA+EKN+ N TPM YSC LCGKGYRSSKAL QHL SRSHI
Sbjct: 34  RKIAGVPGVTEALYLARQSSLAEEKNRLNETPMLYSCSLCGKGYRSSKALGQHLKSRSHI 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           +RASQ  S++++E  IIKP+  R  NKPP +RE  NEESED     EEV PDE LV EAT
Sbjct: 94  LRASQRASHQDEETTIIKPLTHRTANKPPPQREPVNEESEDEW---EEVNPDEDLVGEAT 150

Query: 132 NSLTNLNVGSPADDDLEEDDDDGA-FE-EFDPACCFMCDLPHDAIENCMVHMHKCHGFFI 189
            S+T +NV   A +D  ++ DD   FE + DP CCFMCD   + IE C+VHMHK HGFFI
Sbjct: 151 ESITQMNVNEHASNDDMDESDDDDDFEIKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFI 210

Query: 190 PDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGD 249
           PDVEYLKDPKGLLTYLGLKV RDFMCLYCND CHPFNSLEAVRKHM AK HCK+H+GDG 
Sbjct: 211 PDVEYLKDPKGLLTYLGLKVTRDFMCLYCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGG 270

Query: 250 DEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELG-GGSELIITKRTDKGTSTKTFG 308
           D+EEAELEEFYDYSSSY+D D KQL++S DM NTVELG GGSELIIT+RTD G STK+ G
Sbjct: 271 DDEEAELEEFYDYSSSYVDVDEKQLVASGDMNNTVELGCGGSELIITRRTDGGISTKSLG 330

Query: 309 SREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEA 368
           SRE+LRYYRQKPRPSP N  AITAALASRY+SMGLATVQ+RE +VRMKV+K+MN++GVEA
Sbjct: 331 SREFLRYYRQKPRPSPMNGAAITAALASRYRSMGLATVQSREQIVRMKVMKQMNKSGVEA 390

Query: 369 MRTRVGMKNNIIRNLPKNVPY 389
           MR+++GMK+N+IRNLP NVPY
Sbjct: 391 MRSKIGMKSNVIRNLPNNVPY 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574095|ref|XP_002527963.1| transcription factor, putative [Ricinus communis] gi|223532589|gb|EEF34375.1| transcription factor, putative [Ricinus communis]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 284/379 (74%), Positives = 325/379 (85%), Gaps = 7/379 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNKNA-TPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           ++VAGVPGVTEALFLARQ+ L QEK+K++ TPM YSC LCGKGYRSSKA AQHL SRSHI
Sbjct: 34  RKVAGVPGVTEALFLARQSVLVQEKDKSSETPMLYSCVLCGKGYRSSKAHAQHLKSRSHI 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           +RASQG +NE ++  +IKP+P R +NK P +R   +EESEDS DEWEEV P+E LV +A+
Sbjct: 94  LRASQG-ANENEDTAVIKPLPRRIMNKRPPQRAVEDEESEDSGDEWEEVDPEEELVGDAS 152

Query: 132 NSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPD 191
            SLT L+V   +D+D++E +DD      DP+CCFMCD  H  +E+CMVHMHK HGFFIPD
Sbjct: 153 KSLTGLSVNETSDEDMDEGEDDELL---DPSCCFMCDQQHGNVESCMVHMHKQHGFFIPD 209

Query: 192 VEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDE 251
           VEYLKDPK LLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHM AK HCK+H+GDGDDE
Sbjct: 210 VEYLKDPKSLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMAAKGHCKVHYGDGDDE 269

Query: 252 EEAELEEFYDYSSSYMDEDGKQLISSSDMANTVEL-GGGSELIITKRTDKGTSTKTFGSR 310
           EEAELEEFYDYSSSY+DE+GKQLI S DMANTVEL GGGSELIIT R+D   S+KT GSR
Sbjct: 270 EEAELEEFYDYSSSYVDENGKQLIVSGDMANTVELGGGGSELIITTRSDSKISSKTLGSR 329

Query: 311 EYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 370
           E+LRYYRQKPRPSPAN VAITAALASRY+SMGLATVQ+RE MVRMKV+KEMNR+  EAMR
Sbjct: 330 EFLRYYRQKPRPSPANGVAITAALASRYRSMGLATVQSREQMVRMKVMKEMNRSS-EAMR 388

Query: 371 TRVGMKNNIIRNLPKNVPY 389
           T++GMK+NIIRNLPKNVPY
Sbjct: 389 TKIGMKSNIIRNLPKNVPY 407

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398699|gb|ADL36644.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/379 (74%), Positives = 325/379 (85%), Gaps = 9/379 (2%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           +++AGVPGVTEALF+ARQAALAQEKN  + TPM YSCGLCGKGYRSSKA A+HL SRSHI
Sbjct: 34  RKIAGVPGVTEALFIARQAALAQEKNSLSETPMLYSCGLCGKGYRSSKAHAEHLKSRSHI 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           +RASQG S E++EK II+P+P R VNK P KREAN+EE+E+S+DEW EV PDE L     
Sbjct: 94  LRASQGAS-EQEEKAIIRPLPPRVVNKAPPKREANDEETEESEDEWVEVDPDEDLA---- 148

Query: 132 NSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPD 191
            SLT++NV   A ++  ++DD   FEE DP CCFMCDL HD +E+CMVHMHK HGFFIPD
Sbjct: 149 KSLTDMNVDEHASEEDMDEDD--DFEELDPTCCFMCDLEHDTLESCMVHMHKHHGFFIPD 206

Query: 192 VEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDE 251
           +EYLKDPKGLLTYLGLKVKRDFMCLYCNDR HPFNSLEAVRKHM AK HCK+H+GD DDE
Sbjct: 207 IEYLKDPKGLLTYLGLKVKRDFMCLYCNDRRHPFNSLEAVRKHMVAKSHCKVHYGDDDDE 266

Query: 252 EEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELG-GGSELIITKRTDKGTSTKTFGSR 310
           EEAELEEFYDYSSSY+DE GKQL+ S DMAN+VELG GGSELIIT+R+D G S+KT GSR
Sbjct: 267 EEAELEEFYDYSSSYVDEAGKQLVVSGDMANSVELGSGGSELIITRRSDDGISSKTLGSR 326

Query: 311 EYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 370
           EYLRYYRQK RPSPAN  AITAALASRY+SMGLATVQ++E MVRMKV+KEM R+GVEAMR
Sbjct: 327 EYLRYYRQKLRPSPANGAAITAALASRYRSMGLATVQSKERMVRMKVLKEMRRSGVEAMR 386

Query: 371 TRVGMKNNIIRNLPKNVPY 389
           +++GMK+N+IRNLPKN  Y
Sbjct: 387 SKMGMKSNVIRNLPKNCTY 405

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563786|ref|XP_003550140.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/379 (71%), Positives = 323/379 (85%), Gaps = 7/379 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           ++VAGVPGVTEALFLARQ+ LAQEKNK   TPM Y+CGLCGK Y+SSKA A+HL SR H+
Sbjct: 34  RKVAGVPGVTEALFLARQSVLAQEKNKLGETPMLYTCGLCGKDYKSSKAHAEHLKSRGHM 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           MRAS+GTS+ + EK I+KP+P R VN+PP +RE +N E+E+S+DEWEEV P+E LV  A 
Sbjct: 94  MRASEGTSHAD-EKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAA 152

Query: 132 NSLTNLNVGSPADD-DLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIP 190
            SLT+LNV    ++ D+E DDD   FEE DP+CCFMCD  H  IENCMVHMHK HGFFIP
Sbjct: 153 KSLTDLNVNEHGENVDMEVDDD---FEELDPSCCFMCDQEHKTIENCMVHMHKHHGFFIP 209

Query: 191 DVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDD 250
           DVEYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDG D
Sbjct: 210 DVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGVD 269

Query: 251 EEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSR 310
           +EE ELEEFYDYSSSY+D+ GKQL++S D +N VEL GGSELII++++   +STKT GSR
Sbjct: 270 DEEVELEEFYDYSSSYVDDQGKQLVASCDASNNVELVGGSELIISRKSGDRSSTKTLGSR 329

Query: 311 EYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 370
           E+LRYYRQKPRPS A N+AITAALASRY+SMGL T+Q+RE +VRMKV+KEMNR+GV+ MR
Sbjct: 330 EFLRYYRQKPRPSLA-NMAITAALASRYRSMGLTTIQSREKIVRMKVLKEMNRSGVDNMR 388

Query: 371 TRVGMKNNIIRNLPKNVPY 389
           T++ MK+N+IRNLPKNVPY
Sbjct: 389 TKMAMKSNVIRNLPKNVPY 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081767|emb|CBI20772.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/380 (67%), Positives = 296/380 (77%), Gaps = 40/380 (10%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           +++AGVPGVTEAL+LARQ++LA+EKN+ N TPM YSC LCGKGYRSSKAL QHL SRSHI
Sbjct: 34  RKIAGVPGVTEALYLARQSSLAEEKNRLNETPMLYSCSLCGKGYRSSKALGQHLKSRSHI 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           +RASQ  S++++E  IIKP+  R  NKPP +RE  NEESED DD+               
Sbjct: 94  LRASQRASHQDEETTIIKPLTHRTANKPPPQREPVNEESEDDDDDD-------------- 139

Query: 132 NSLTNLNVGSPADDDLEEDDDDGAFE-EFDPACCFMCDLPHDAIENCMVHMHKCHGFFIP 190
                                   FE + DP CCFMCD   + IE C+VHMHK HGFFIP
Sbjct: 140 -----------------------DFEIKLDPTCCFMCDQEQNTIERCIVHMHKQHGFFIP 176

Query: 191 DVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDD 250
           DVEYLKDPKGLLTYLGLKV RDFMCLYCND CHPFNSLEAVRKHM AK HCK+H+GDG D
Sbjct: 177 DVEYLKDPKGLLTYLGLKVTRDFMCLYCNDGCHPFNSLEAVRKHMVAKSHCKVHYGDGGD 236

Query: 251 EEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELG-GGSELIITKRTDKGTSTKTFGS 309
           +EEAELEEFYDYSSSY+D D KQL++S DM NTVELG GGSELIIT+RTD G STK+ GS
Sbjct: 237 DEEAELEEFYDYSSSYVDVDEKQLVASGDMNNTVELGCGGSELIITRRTDGGISTKSLGS 296

Query: 310 REYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAM 369
           RE+LRYYRQKPRPSP N  AITAALASRY+SMGLATVQ+RE +VRMKV+K+MN++GVEAM
Sbjct: 297 REFLRYYRQKPRPSPMNGAAITAALASRYRSMGLATVQSREQIVRMKVMKQMNKSGVEAM 356

Query: 370 RTRVGMKNNIIRNLPKNVPY 389
           R+++GMK+N+IRNLP NVPY
Sbjct: 357 RSKIGMKSNVIRNLPNNVPY 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539178|ref|XP_003538077.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/379 (71%), Positives = 325/379 (85%), Gaps = 7/379 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           ++VAGVPGVTEALFLARQ+ LAQEKNK   TPM YSCGLCGK Y+SSKA A+HL SR H+
Sbjct: 34  RKVAGVPGVTEALFLARQSVLAQEKNKLGETPMLYSCGLCGKDYKSSKAHAEHLKSRGHM 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           M+AS+GTS+ + EK I+KP+P R VN+PP +RE +N E+E+S+DEWEEV P+E LV  A 
Sbjct: 94  MQASEGTSHAD-EKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAA 152

Query: 132 NSLTNLNVGSPADD-DLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIP 190
            SLT+LNV    ++ D+E DDD   FEE DP+CCFMCD  H +IENCMVHMHK HGFFIP
Sbjct: 153 KSLTDLNVNEHGENVDMEVDDD---FEELDPSCCFMCDQEHKSIENCMVHMHKHHGFFIP 209

Query: 191 DVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDD 250
           DVEYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD
Sbjct: 210 DVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDD 269

Query: 251 EEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSR 310
           +EE EL+EFYDYSSSY+D+ GKQL++S D +N VEL GGSELIIT ++ + +STKT GSR
Sbjct: 270 DEEVELDEFYDYSSSYVDDQGKQLVASCDASNNVELVGGSELIITTKSGERSSTKTLGSR 329

Query: 311 EYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 370
           E+LRYYRQKPRPS A N+AITAALASRY+SMGL T+Q+RE +VRMKV+KEMNR+GV+ MR
Sbjct: 330 EFLRYYRQKPRPSLA-NMAITAALASRYRSMGLTTIQSREKIVRMKVLKEMNRSGVDNMR 388

Query: 371 TRVGMKNNIIRNLPKNVPY 389
           T++ MK+N+IRNLPKNVPY
Sbjct: 389 TKMAMKSNVIRNLPKNVPY 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563788|ref|XP_003550141.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/379 (71%), Positives = 323/379 (85%), Gaps = 7/379 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           ++VAGVPGVTEALFLARQ+ LAQEKNK   TPM Y+CGLCGK Y+SSKA A+HL SR H+
Sbjct: 34  RKVAGVPGVTEALFLARQSVLAQEKNKLGETPMLYTCGLCGKDYKSSKAHAEHLKSRGHM 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           MRAS+GTS+ + EK I+KP+P R VN+PP KRE +N E+E+S+DEWEEV P+E LV  A 
Sbjct: 94  MRASEGTSHAD-EKAIVKPLPQRVVNRPPPKREVDNSENEESEDEWEEVDPEEDLVDGAA 152

Query: 132 NSLTNLNVGSPADD-DLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIP 190
            SLT+LNV    ++ D+E DDD   FEE DP+CCFMCD  H  IE+CMVHMHK HGFFIP
Sbjct: 153 KSLTDLNVNEHGENVDMEVDDD---FEELDPSCCFMCDQEHKTIEDCMVHMHKHHGFFIP 209

Query: 191 DVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDD 250
           DVEYLKDPKGLLTYLGLKVK+D+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD
Sbjct: 210 DVEYLKDPKGLLTYLGLKVKKDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDD 269

Query: 251 EEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSR 310
           +EE EL+EFYDYSSSY+D+ GKQL++S D +N VEL GGSELIIT ++ +  STKT GSR
Sbjct: 270 DEEVELDEFYDYSSSYVDDQGKQLVASCDASNNVELVGGSELIITTKSGERASTKTLGSR 329

Query: 311 EYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 370
           E+LRYYRQKPRPS A N+AITAALASRY+SMGL T+Q+RE +VRMKV+KEMNR+GV+ MR
Sbjct: 330 EFLRYYRQKPRPSLA-NMAITAALASRYRSMGLTTIQSREKIVRMKVLKEMNRSGVDNMR 388

Query: 371 TRVGMKNNIIRNLPKNVPY 389
           T++ MK+N+IRNLPKNVPY
Sbjct: 389 TKMAMKSNVIRNLPKNVPY 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507466|gb|AFK41799.1| unknown [Lotus japonicus]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/379 (69%), Positives = 315/379 (83%), Gaps = 4/379 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           ++VAGVPGVTEALFLARQAALA+EK+K N T M YSCGLCGKGY+SSKA A+HL SR H+
Sbjct: 34  RKVAGVPGVTEALFLARQAALAEEKDKANETAMLYSCGLCGKGYKSSKAHAEHLKSRGHL 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           MR S+GTS  + EK I+KP+P R  N+PP +RE    E  +S+DEWEEV P++ LV +A 
Sbjct: 94  MRVSEGTSQSD-EKAIVKPLPQRSANRPPPRREVQVSEDGESEDEWEEVDPEDDLVGDAA 152

Query: 132 NSLTNLNVGSPADDDLEEDDDDGAFEEFD-PACCFMCDLPHDAIENCMVHMHKCHGFFIP 190
            SLT +NV   AD+D + D+DD    E   PACCFMCD  H+ IENCMVHMHK HGFFIP
Sbjct: 153 KSLTEMNVDEDADNDDDMDEDDDDTFEELDPACCFMCDQGHNTIENCMVHMHKHHGFFIP 212

Query: 191 DVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDD 250
           D+EYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHM AK HCK+HFGDGDD
Sbjct: 213 DIEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDD 272

Query: 251 EEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSR 310
           EEE ELE+FYDYSSSY DE G+QL+ S D  N +EL GGSEL+I++++   TST+T GSR
Sbjct: 273 EEEVELEDFYDYSSSYADEQGEQLVVSGDTTNNIELFGGSELVISRKSGDKTSTRTLGSR 332

Query: 311 EYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 370
           E+LRYYRQKPRPSPA N+AITAALASRY+SMGLATVQ+RE +VRMKV+K+M++TGVE MR
Sbjct: 333 EFLRYYRQKPRPSPA-NMAITAALASRYRSMGLATVQSREQIVRMKVLKQMSKTGVENMR 391

Query: 371 TRVGMKNNIIRNLPKNVPY 389
           +++GMK+N+IRNLPKN  Y
Sbjct: 392 SKMGMKSNVIRNLPKNCTY 410

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508652|gb|AFK42392.1| unknown [Lotus japonicus]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/379 (69%), Positives = 315/379 (83%), Gaps = 4/379 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           ++VAGVPGVTEALFLARQAALA+EK+K N T M YSCGLCGKGY+SSKA A+HL SR H+
Sbjct: 34  RKVAGVPGVTEALFLARQAALAEEKDKANETAMLYSCGLCGKGYKSSKAHAEHLKSRGHL 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           MR S+GTS  + EK I+KP+P R  N+PP +RE    E  +S+DEWEEV P++ LV +A 
Sbjct: 94  MRVSEGTSQSD-EKAIVKPLPQRSANRPPPRREVQVSEDGESEDEWEEVDPEDDLVGDAA 152

Query: 132 NSLTNLNVGSPADDDLEEDDDDGAFEEFD-PACCFMCDLPHDAIENCMVHMHKCHGFFIP 190
            SLT +NV   AD+D + D+DD    E   PACCFMCD  H+ IENCMVHMHK HGFFIP
Sbjct: 153 KSLTEMNVDEDADNDDDMDEDDDDTFEELDPACCFMCDQGHNTIENCMVHMHKHHGFFIP 212

Query: 191 DVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDD 250
           D+EYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHM AK HCK+HFGDGDD
Sbjct: 213 DIEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMVAKSHCKVHFGDGDD 272

Query: 251 EEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSR 310
           EEE ELE+FYDYSSSY+DE G+QL+ S D  N +EL GG EL+I++++   TST+T GSR
Sbjct: 273 EEEVELEDFYDYSSSYVDEQGEQLVVSGDTTNNIELFGGFELVISRKSGDKTSTRTLGSR 332

Query: 311 EYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 370
           E+LRYYRQKPRPSPA N+AITAALASRY+SMGLATVQ+RE +VRMKV+K+M++TGVE MR
Sbjct: 333 EFLRYYRQKPRPSPA-NMAITAALASRYRSMGLATVQSREQIVRMKVLKQMSKTGVENMR 391

Query: 371 TRVGMKNNIIRNLPKNVPY 389
           +++GMK+N+IRNLPKN  Y
Sbjct: 392 SKMGMKSNVIRNLPKNCTY 410

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539180|ref|XP_003538078.1| PREDICTED: zinc finger protein 622-like [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/378 (69%), Positives = 318/378 (84%), Gaps = 5/378 (1%)

Query: 13  KQVAGVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
           ++VAGVPGVTEALFLARQ+ LAQEKNK   TPM Y CGLCGK Y+SSKA A+HL SR H+
Sbjct: 34  RKVAGVPGVTEALFLARQSVLAQEKNKLGETPMLYCCGLCGKDYKSSKAHAEHLKSRGHM 93

Query: 72  MRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEAT 131
           MRAS+GTS  + EK I+KP+P R VN+PP +RE +N E+E+S+DEWEEV P+E LV  A 
Sbjct: 94  MRASEGTSQAD-EKAIVKPLPQRVVNRPPPRREVDNSENEESEDEWEEVDPEEDLVDGAA 152

Query: 132 NSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPD 191
            SLT+LNV    ++   + ++D  FEE DP+CCFMCD  H  IE+CMVHMHK HGFFIPD
Sbjct: 153 KSLTDLNVNEHGEN--VDMEEDDDFEELDPSCCFMCDQEHKTIEDCMVHMHKHHGFFIPD 210

Query: 192 VEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDE 251
           VEYLKDPKGLLTYLGLKVKRD+MCLYCNDRC+PF+SLEAVRKHMEAK HCK+H+GDGDD+
Sbjct: 211 VEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDD 270

Query: 252 EEAELEEFYDYSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFGSRE 311
           EE EL+EFYDYSSSY+D+ GKQL++S D +N VEL GGSELIIT ++   +STKT GSRE
Sbjct: 271 EEVELDEFYDYSSSYVDDQGKQLVASCDASNNVELAGGSELIITTKSGDRSSTKTLGSRE 330

Query: 312 YLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRT 371
           +LRYYRQKPRPS A N+AITAALASRY+S+GL T+Q+RE +VRMKV+KEMNR+GV+ MRT
Sbjct: 331 FLRYYRQKPRPSLA-NMAITAALASRYRSLGLTTIQSREKIVRMKVLKEMNRSGVDNMRT 389

Query: 372 RVGMKNNIIRNLPKNVPY 389
           ++ MK+N+IRNLP NVPY
Sbjct: 390 KMAMKSNVIRNLPNNVPY 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2128161	405	AT4G31420 [Arabidopsis thalian	0.946	0.908	0.519	1.5e-99
TAIR|locus:2061087	395	FZF [Arabidopsis thaliana (tax	0.580	0.572	0.611	1.1e-95
UNIPROTKB|F1N194	470	ZNF622 "Uncharacterized protei	0.542	0.448	0.311	4.4e-26
FB|FBgn0030878	409	CG6769 [Drosophila melanogaste	0.516	0.491	0.333	7.9e-26
UNIPROTKB|F1LQ57	475	Fam134b "Protein FAM134B" [Rat	0.542	0.444	0.306	1.2e-25
UNIPROTKB|F1SRM2	424	ZNF622 "Uncharacterized protei	0.532	0.488	0.311	1.6e-24
MGI|MGI:1289282	476	Zfp622 "zinc finger protein 62	0.537	0.439	0.303	2.5e-24
UNIPROTKB|D4A2K8	435	D4A2K8 "Uncharacterized protei	0.529	0.473	0.315	5.4e-24
UNIPROTKB|E2R1D3	458	ZNF622 "Uncharacterized protei	0.542	0.460	0.297	6.1e-24
UNIPROTKB|Q969S3	477	ZNF622 "Zinc finger protein 62	0.542	0.442	0.297	9.1e-22

TAIR|locus:2128161 AT4G31420 [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 198/381 (51%), Positives = 251/381 (65%)

Query:    13 KQVAGVPGVTEXXXXXXXXXXXXEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHI 71
             ++VAGVPGVTE            EKNK N  PM Y+C +C KGYRSSKA  QHL SRSH+
Sbjct:    34 RKVAGVPGVTEALFEARQSALAQEKNKSNEAPMLYTCAICAKGYRSSKAHEQHLQSRSHV 93

Query:    72 MRASQGTS-NEEKEKVIIKPIPLRDVNKPPRKREANNXXXXXXXXXXXXVGPDEVLVSE- 129
             +R SQGTS N E++  II+ +P        R+ +               V  DE L +E 
Sbjct:    94 LRVSQGTSINGEEDIAIIRQLP--------RRVQHRGSIDDDSEDEWVEVDSDEELAAEE 145

Query:   130 ATNSLTNLNVGSPXXXXXXXXXXXXXXXXXXPACCFMCDLPHDAIENCMVHMHKCHGFFI 189
             A++SL+ LNV                     P CC MCD  H  +E+CM+HMHK HGFFI
Sbjct:   146 ASDSLSKLNVNESGSAEDMDDDGDADKYELDPTCCLMCDKKHKTLESCMLHMHKHHGFFI 205

Query:   190 PDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHXXXXX 249
             PD+EYLKDP+GLLTYLGLKVKRDFMCLYCN+ C PF+SLEAVRKHMEAK HCK+H     
Sbjct:   206 PDIEYLKDPEGLLTYLGLKVKRDFMCLYCNELCRPFSSLEAVRKHMEAKSHCKLHYGDGD 265

Query:   250 XXXXXXXXXXXX-XSSSYMDEDGKQLISSSDMANTVELGGGSELIITKRTDKGTSTKTFG 308
                           SSSY+DE GKQ++ S +  NTVEL GGSEL+IT++++  T++KT G
Sbjct:   266 DEEDAELEEFYDYSSSSYVDEAGKQIVVSGETDNTVELVGGSELLITEKSENTTTSKTLG 325

Query:   309 SREYLRYYRQKPRPSPANNVAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEA 368
             SRE++RYYRQKPRP+  ++  I A+L+SRYKS+GL TV ++E  +RMKV KEM++ G E 
Sbjct:   326 SREFMRYYRQKPRPTSQDSNQIIASLSSRYKSLGLKTVPSKEETLRMKVRKEMSKRG-ET 384

Query:   369 MRTRVGMKNNIIRNLPKNVPY 389
             MRT++G+K+N+IRNLP NVPY
Sbjct:   385 MRTKIGVKSNVIRNLPNNVPY 405

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2061087 FZF [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 140/229 (61%), Positives = 171/229 (74%)

Query:   161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCND 220
             PACC MCD  H  IE CMVHMHK HGFFIPD+EYLKDPKG LTYLGLKVKRDF+CLYCN+
Sbjct:   170 PACCLMCDKKHKTIEKCMVHMHKFHGFFIPDIEYLKDPKGFLTYLGLKVKRDFVCLYCNE 229

Query:   221 RCHPFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMDEDGKQLISSSDM 280
              CHPF+SLEAVRKHM+AK HCK+H                  SSSY++ D  Q++ S + 
Sbjct:   230 LCHPFSSLEAVRKHMDAKGHCKVHYGDGGDEEDAELEEFYDYSSSYVNGDENQMVVSGES 289

Query:   281 ANTVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAALASRYKS 340
              NTVEL GGSEL+ITKRTD   +++T GSRE++RYY+QKP PS   +  I  +L SRYK 
Sbjct:   290 VNTVELFGGSELVITKRTDNKVTSRTLGSREFMRYYKQKPAPSSQKH--IVNSLTSRYKM 347

Query:   341 MGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNLPKNVPY 389
             MGLATVQ++E +VRMKV++EMN+ G ++   R+GMK+N+IRNLP NV Y
Sbjct:   348 MGLATVQSKEAIVRMKVMREMNKRGAKSS-VRLGMKSNVIRNLPNNVTY 395

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|F1N194 ZNF622 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
 Identities = 70/225 (31%), Positives = 107/225 (47%)

Query:   164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
             C  C     ++   + HM K H FFIPDVEYL D KGL+ YLG KV    +CL+CN+R  
Sbjct:   247 CLFCPHHSSSLTKNVAHMTKVHSFFIPDVEYLSDLKGLIKYLGEKVGVGKICLWCNERGK 306

Query:   224 PFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 282
              F S EAV+ HM  + HCK+                    SSY D ++G+    + ++ +
Sbjct:   307 SFYSTEAVQAHMNDRSHCKLFTDGDALLEFADFYDFR---SSYPDHKEGEDHDETEELPS 363

Query:   283 TVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALASRY 338
                L    E   T      +  +  G R  +RYY+Q+    R  + A N      +  +Y
Sbjct:   364 EKTLDYDDE---TMELILPSGARV-GHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVLQQY 419

Query:   339 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
             +++G  T  T   +VR + ++ + R   + M  ++GMKNN  R +
Sbjct:   420 RALGW-TGSTGAALVRQRDMQYVQRMKSKWM-LKMGMKNNATRQM 462

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0030878 CG6769 [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
 Identities = 74/222 (33%), Positives = 103/222 (46%)

Query:   163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRC 222
             C F      D +EN + HM   H FFIPD EY  D +GLL YLG KV   F+CL+CNDR 
Sbjct:   191 CLFCTHASEDLVEN-LKHMSVAHSFFIPDTEYCTDIEGLLYYLGEKVANYFICLFCNDRG 249

Query:   223 HPFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMDEDGKQLISSSDMAN 282
               F SL+AVRKHM  K HC++                   SSSY D +    I    + +
Sbjct:   250 KTFYSLDAVRKHMIDKGHCQM---LHEGVALAEYAEYYDYSSSYPDNNEGMDIDEEVVPD 306

Query:   283 TVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQKPRPSPANNVAITAA------LAS 336
              ++ G   +L++        S    G R  LRYY+Q+ RP  A  V I  +      + S
Sbjct:   307 LLD-GDEYQLVLP-------SGAVIGHRSLLRYYKQRLRPERA--VVIKKSDRKLHRVLS 356

Query:   337 RYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNN 378
              Y+++G    Q      + + I  M R   +  + ++G K N
Sbjct:   357 EYRALGWTQTQQLSAARKARDIHLMKRVQSK-WQMKLGCKAN 397

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LQ57 Fam134b "Protein FAM134B" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
 Identities = 69/225 (30%), Positives = 107/225 (47%)

Query:   164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   252 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 311

Query:   224 PFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 282
              F S EAV+ HM  K HCK+                    SSY D ++G+      D+++
Sbjct:   312 SFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFR---SSYPDYKEGQDPAEIEDLSS 368

Query:   283 TVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALASRY 338
                L    E   T      +  +  G R  +RYY+Q+   PR  + A N      +  +Y
Sbjct:   369 EKILECDDE---TMELILPSGARV-GHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQQY 424

Query:   339 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
             +++G  T  T   ++R + ++ + R   + M  + GMKNN  + +
Sbjct:   425 RALGW-TGSTGAALMRERDMQYVQRMKSKWM-LKTGMKNNATKQM 467

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

UNIPROTKB|F1SRM2 ZNF622 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
 Identities = 72/231 (31%), Positives = 113/231 (48%)

Query:   164 CFMCDLPHDA---IENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCND 220
             C  C  PH +   ++N + HM K H FF+PDVEYL D KGL+ YLG KV    +CL+CN+
Sbjct:   199 CLFC--PHHSSSLVKN-VAHMTKVHSFFLPDVEYLSDLKGLIKYLGEKVGVGKICLWCNE 255

Query:   221 RCHPFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSD 279
             +   F S EAV+ HM  + HCK+                    SSY D ++G+    +  
Sbjct:   256 KGKSFYSTEAVQAHMHDRSHCKLFTDGDALLEFADFYDFR---SSYPDHKEGEDPDETEA 312

Query:   280 MANTVELGGGS---ELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITA 332
             + +   LG      ELI+   T  G      G R  +RYY+Q+    R  + A N     
Sbjct:   313 LPSEKPLGYDDDTMELILPSET--GARV---GHRSLMRYYKQRFGLSRAVAVARNQKAVG 367

Query:   333 ALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
              +  +Y+++G  T  T   +VR + ++ + R   + +  ++G+KNN  + +
Sbjct:   368 RVLQQYRALGW-TGSTGAALVRQRDMQYVQRMKSKWL-LKMGVKNNATKQM 416

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0033674 "positive regulation of kinase activity" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1289282 Zfp622 "zinc finger protein 622" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
 Identities = 69/227 (30%), Positives = 108/227 (47%)

Query:   164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   253 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 312

Query:   224 PFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLIS-SSDMA 281
              F S EAV+ HM  K HCK+                      Y + +D  +L + S+D  
Sbjct:   313 SFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDYKEGQDPAELEALSTD-- 370

Query:   282 NTVELGGGS-ELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALAS 336
               +E    + ELI+        S    G R  +RYY+Q+   PR  + A N      +  
Sbjct:   371 KILECDDETMELILP-------SGARVGHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQ 423

Query:   337 RYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
             +Y+++G     T   ++R + ++ + R   + M  ++GMKNN  + +
Sbjct:   424 QYRALGWMG-STGAALMRERDMQYVQRMKSKWM-LKIGMKNNATKQM 468

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=ISO

GO:0033674 "positive regulation of kinase activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO

GO:0046330 "positive regulation of JNK cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4A2K8 D4A2K8 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 252 (93.8 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
 Identities = 71/225 (31%), Positives = 107/225 (47%)

Query:   164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   217 CLFCSHHSSSLVKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGAGKICLWCNEKGK 276

Query:   224 PFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 282
              F S EAV+ HM  K HCK+                    SSY D ++G+      D++ 
Sbjct:   277 SFYSTEAVQAHMNDKSHCKLFTDGDAVLEFADFYDFR---SSYPDYKEGQDPAEIEDLSL 333

Query:   283 TVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALASRY 338
               +     ELII        S    G R  +RYY+Q+   PR  + A N      +  +Y
Sbjct:   334 ECD-DETMELIIP-------SGARVGHRSLMRYYKQRFGLPRAVTVARNQKAVGRVLQQY 385

Query:   339 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
             +++G  T  T   ++R + ++ + R     ++T  GMKNN  + +
Sbjct:   386 RALGW-TGSTGAALMRERDMQYVQRKSKWMLKT--GMKNNATKQM 427

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R1D3 ZNF622 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
 Identities = 67/225 (29%), Positives = 100/225 (44%)

Query:   164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   238 CLFCPHHSSSLMKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGK 297

Query:   224 PFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMDEDGKQLISSSDMANT 283
              F S EAV+ HM  K HCK+                      Y + D            T
Sbjct:   298 SFYSTEAVQAHMNDKSHCKLFTDGNAALEFADFYDFRSSYPDYKEGDHPDETEELPSEKT 357

Query:   284 VELGGGS-ELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALASRY 338
             VE    + ELI+        S    G R  +RYY+Q+    R  + A N      +  +Y
Sbjct:   358 VEYDDETMELILP-------SGARVGHRSLMRYYKQRFGLSRAVAVAKNQKAVGRILQQY 410

Query:   339 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
             +++G  T  T   ++  + ++ + R   + M  + GMKNN  + +
Sbjct:   411 RALGW-TGSTGAALLHERDMQYVQRMKSKWM-LKTGMKNNATKQM 453

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q969S3 ZNF622 "Zinc finger protein 622" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 9.1e-22, Sum P(2) = 9.1e-22
 Identities = 67/225 (29%), Positives = 106/225 (47%)

Query:   164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCH 223
             C  C     ++   + HM K H FFIPD+EYL D KGL+ YLG KV    +CL+CN++  
Sbjct:   254 CLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGK 313

Query:   224 PFNSLEAVRKHMEAKRHCKIHXXXXXXXXXXXXXXXXXXSSSYMD-EDGKQLISSSDMAN 282
              F S EAV+ HM  K HCK+                    SSY D ++G+    + ++ +
Sbjct:   314 SFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFR---SSYPDHKEGEDPNKAEELPS 370

Query:   283 TVELGGGSELIITKRTDKGTSTKTFGSREYLRYYRQK---PRP-SPANNVAITAALASRY 338
                L    E   T      +  +  G R  +RYY+Q+    R  + A N      +  +Y
Sbjct:   371 EKNLEYDDE---TMELILPSGARV-GHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVLQQY 426

Query:   339 KSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNL 383
             +++G  T  T   ++R + ++ + R   + M  + GMKNN  + +
Sbjct:   427 RALGW-TGSTGAALMRERDMQYVQRMKSKWM-LKTGMKNNATKQM 469

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IMP

GO:0043410 "positive regulation of MAPK cascade" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0033674 "positive regulation of kinase activity" evidence=IDA

GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam12756	100	pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 cop	2e-40

>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies)

 Score =  138 bits (350), Expect = 2e-40
 Identities = 51/104 (49%), Positives = 65/104 (62%), Gaps = 5/104 (4%)

Query: 163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRC 222
            C  C+   D +E  + HM K HGFFIP+ EYL D +GLL YL  K+     CLYC  + 
Sbjct: 1   DCLFCNHTSDTVEENLEHMFKSHGFFIPEREYLVDLEGLLNYLREKIHEGNECLYCGKQ- 59

Query: 223 HPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSY 266
             F SLEA+R+HM  K HCKI +    +EE+ E+ EFYD+SSSY
Sbjct: 60  --FKSLEALRQHMRDKGHCKIPY--ETEEEKDEIAEFYDFSSSY 99

This family contains two copies of a C2H2-like zinc finger domain. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	100.0
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	99.79
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	99.68
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	99.48
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.49
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.33
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.19
KOG2505	591	consensus Ankyrin repeat protein [General function	97.97
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	97.73
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	97.15
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.87
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.35
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.18
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	96.08
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.74
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.73
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	95.59
smart00355	26	ZnF_C2H2 zinc finger.	95.25
PLN02748	468	tRNA dimethylallyltransferase	94.88
PTZ00448	373	hypothetical protein; Provisional	94.77
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.24
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.76
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.42
PHA02768	55	hypothetical protein; Provisional	92.61
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	92.49
PHA00616	44	hypothetical protein	91.94
PF13821	55	DUF4187: Domain of unknown function (DUF4187)	91.93
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	91.22
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	89.9
KOG3608	467	consensus Zn finger proteins [General function pre	89.45
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.35
PHA00733	128	hypothetical protein	88.81
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	88.81
KOG3608	467	consensus Zn finger proteins [General function pre	88.15
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	87.25
KOG4727	193	consensus U1-like Zn-finger protein [General funct	86.07
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	85.7
PHA02768	55	hypothetical protein; Provisional	85.22
KOG3032	264	consensus Uncharacterized conserved protein [Funct	84.42
PHA00616	44	hypothetical protein	83.84
KOG3576	267	consensus Ovo and related transcription factors [T	83.22
PHA00732	79	hypothetical protein	82.44
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	82.38
smart00355	26	ZnF_C2H2 zinc finger.	82.1
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	81.8
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	81.33
PHA00732	79	hypothetical protein	80.68
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	80.66

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=1.7e-92  Score=695.97  Aligned_cols=358  Identities=36%  Similarity=0.557  Sum_probs=274.8

Q ss_pred             cccchhhhhhhhhhcCCCCCCHHHHHHHHHHHHHhhhc--cCCCCccccccccCccCCHHHHHHHhhcHhHHHhhhcCCC
Q 016443            2 WKIFLFLLLPIKQVAGVPGVTEALFLARQAALAQEKNK--NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQGTS   79 (389)
Q Consensus         2 ~k~~~hr~NlKRKVA~LPPVTaE~F~~k~~~~a~~~~~--~~~~~~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~~~   79 (389)
                      |||||||||||||||+|||||+|+|+.|+++.+.+...  .++.+.++|.+|+|+|.|++|+.+||+||+|+.++.+...
T Consensus        23 yKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   23 YKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             hhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            89999999999999999999999999999887554444  4577888999999999999999999999999999887665


Q ss_pred             cccchhcccccCCCCCCCCCCCccccCCCCCCCCcccccccCCchhhhhhhcccccccCCCCCCCCCCcccCCCCCCCCC
Q 016443           80 NEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEF  159 (389)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d~e~eweev~~~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (389)
                      ..+++.+.++.++.+.+.   + ..    ...+++..|-+++.++....++       ..+  +..+|.+++ .+...+.
T Consensus       103 ~~e~d~a~~~q~~~~~p~---~-l~----~~~e~e~~~~E~~~~~d~~~e~-------~~d--d~~Edi~~d-~~~e~e~  164 (390)
T KOG2785|consen  103 SEEGDSAKISQLPSRRPS---N-LQ----NKGESELKWYEVDSDEDSSEEE-------EED--DEEEDIEED-GDDEDEL  164 (390)
T ss_pred             cccccchhhhhccccCcc---c-cc----cCCCcccchhhcccccccchhh-------ccC--cchhhhhhc-cchhccc
Confidence            444333444444322110   0 00    0112455666665542110000       000  111111111 1223344


Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKR  239 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK~  239 (389)
                      .|++||||++.+.+++.|+.||++.||||||+++||+|+.|||.||++||..+++|||||..|+.|+|++|||+||.+||
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~  244 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKG  244 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhcc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCChhHHHHhhhhcccCCCCcCccccccccccCCCcceec--CC-CeeEEEecCCCCCCCcceeeeccccccc
Q 016443          240 HCKIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVEL--GG-GSELIITKRTDKGTSTKTFGSREYLRYY  316 (389)
Q Consensus       240 Hcki~~~~~~~e~~~e~~~FYDf~~sy~d~~~~~~~~~~~~~~~~~~--~~-g~eLvL~~~~~~~psG~~iGhR~~~ryy  316 (389)
                      ||||+| ++  |+++||++||||++||+|..+.+.+...++.++..+  .+ .+||+|       |||++||||+|+|||
T Consensus       245 HCkl~y-d~--ee~~El~efYDfsssY~d~~~~~~~~~~e~~~~~~l~~g~~~~el~l-------psga~vGhRsl~RYy  314 (390)
T KOG2785|consen  245 HCKLPY-DG--EERLELAEFYDFSSSYPDIAENQDPDSAEEDPTDELEGGDELYELTL-------PSGARVGHRSLMRYY  314 (390)
T ss_pred             CcccCC-Ch--HHHhhhhhhhcCcccccCcccCCCCcchhcCCcccccccceeeeeec-------ccccccccHHHHHHH
Confidence            999999 54  899999999999999999766555444443333444  12 278999       999999999999999


Q ss_pred             ccCCCCCCCch----HHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCCC
Q 016443          317 RQKPRPSPANN----VAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMRTRVGMKNNIIRNLPKNVP  388 (389)
Q Consensus       317 rQ~~~~~~~~~----~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvg~k~N~~~~~~~~~~  388 (389)
                      ||+|+|+++..    ..++.+....|+++||++.++..+....++++.++|.+ .+|.++||+++|..+||+-++-
T Consensus       315 kQ~l~p~~~~~~~~~r~~~~~~~~~~~a~~~t~~~~~~~k~~~~~~k~v~R~~-~r~~~~~g~k~n~~~~~~~~~~  389 (390)
T KOG2785|consen  315 KQNLRPSSAVVRLVSRRALSRVKRFYPALGWTGTTGVRAKMQARDMKFVERGR-RRFALRVGMKNNYRDQLHQRVQ  389 (390)
T ss_pred             hhcCCCcchHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhcchhhHHHHHhhhhc
Confidence            99999998653    33345566778999999988765555556666666655 6799999999999999987764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=99.79  E-value=1.9e-20  Score=152.38  Aligned_cols=99  Identities=45%  Similarity=0.832  Sum_probs=28.0

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  242 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK~Hck  242 (389)
                      +|+||+..++++..++.||...|+|.||+..+|+++.+|++|++.+|...+.|++|+   +.|.|..+|+.||+.++|++
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~---~~f~s~~~l~~Hm~~~~H~~   77 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCN---KTFRSREALQEHMRSKHHKK   77 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS----EESSHHHHHHHHHHTTTTC
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccC---CCCcCHHHHHHHHcCccCCC
Confidence            599999999999999999999999999999999999999999999999889999999   78999999999999999999


Q ss_pred             ccCCCCChhHHHHhhhhccc-CCCC
Q 016443          243 IHFGDGDDEEEAELEEFYDY-SSSY  266 (389)
Q Consensus       243 i~~~~~~~e~~~e~~~FYDf-~~sy  266 (389)
                      +.++..  ....++..|||| +.+|
T Consensus        78 ~~~~~~--~~~~~~~~~y~~~~~~~  100 (100)
T PF12756_consen   78 RNSESE--ESWEEFEKFYDFWSNDY  100 (100)
T ss_dssp             -S-----------------------
T ss_pred             cccccc--cccccccccccccccCC
Confidence            987643  668899999999 5554

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=99.68  E-value=1.3e-17  Score=163.63  Aligned_cols=160  Identities=21%  Similarity=0.376  Sum_probs=115.0

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHH-hhhcCCCcccchhcccccCCCCCCCCCCCccccC---CCCCCCCcccccccC
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIM-RASQGTSNEEKEKVIIKPIPLRDVNKPPRKREAN---NEESEDSDDEWEEVG  121 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~d~e~eweev~  121 (389)
                      +.|.+|.|.|...|+++.||+.|.|++ |+++...  + ...+|..+... ...-+..++.+   .++..+.+++|.+|.
T Consensus       196 ~~CLyCekifrdkntLkeHMrkK~HrrinPknreY--D-kfyiINY~ev~-ks~t~~~~e~dret~~d~~E~D~~wsDw~  271 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREY--D-KFYIINYLEVG-KSWTIVHSEDDRETNEDINETDDTWSDWN  271 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHhccCcccCCCcccc--c-eEEEEeHhhcC-Cccchhhhhhhhhhhccccccccchhhhh
Confidence            679999999999999999999999999 5554321  1 13344332100 00000000100   112233456676666


Q ss_pred             CchhhhhhhcccccccCCCCCCCCCCcccCCCCCCCCCCCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcc--c---cc
Q 016443          122 PDEVLVSEATNSLTNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE--Y---LK  196 (389)
Q Consensus       122 ~~e~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~e--y---lv  196 (389)
                      +++.                               ++ ....||||.+...++..+++||..+|-|+|-...  |   .|
T Consensus       272 ed~a-------------------------------~a-~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~Y  319 (423)
T KOG2482|consen  272 EDDA-------------------------------EA-LSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFY  319 (423)
T ss_pred             cCCC-------------------------------Cc-cceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchh
Confidence            5431                               11 2368999999999999999999999999999884  3   38


Q ss_pred             CHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCCccccC
Q 016443          197 DPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHF  245 (389)
Q Consensus       197 d~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK~Hcki~~  245 (389)
                      ....|||||+++++. ..|..|.   -+|.+..+++.||..-.|.-|..
T Consensus       320 qrvrviNyiRkq~~~-~~c~~cd---~~F~~e~~l~~hm~e~k~l~i~p  364 (423)
T KOG2482|consen  320 QRVRVINYIRKQKKK-SRCAECD---LSFWKEPGLLIHMVEDKHLSILP  364 (423)
T ss_pred             hhhhHHHHHHHHhhc-ccccccc---ccccCcchhhhhccccccccccC
Confidence            999999999999885 7999998   58999999999999988887764

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=99.48  E-value=3.5e-14  Score=139.66  Aligned_cols=95  Identities=25%  Similarity=0.473  Sum_probs=88.0

Q ss_pred             CCCCccccCCCCC-CCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          159 FDPACCFMCDLPH-DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       159 ~~~~~CLFC~~~s-~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +-..+||||+... .+..+.+.||+..|||.|..++.||....||..|.+++. .++||||.   |.|++...|+.||+.
T Consensus       142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~-r~~CLyCe---kifrdkntLkeHMrk  217 (423)
T KOG2482|consen  142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLE-RLRCLYCE---KIFRDKNTLKEHMRK  217 (423)
T ss_pred             eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHh-hheeeeec---cccCCcHHHHHHHHh
Confidence            4567999999988 589999999999999999999999999999999999987 58999999   899999999999999


Q ss_pred             CCCccccCCCCChhHHHHhhhhcccC
Q 016443          238 KRHCKIHFGDGDDEEEAELEEFYDYS  263 (389)
Q Consensus       238 K~Hcki~~~~~~~e~~~e~~~FYDf~  263 (389)
                      |+|.+|+...      .||++||-..
T Consensus       218 K~HrrinPkn------reYDkfyiIN  237 (423)
T KOG2482|consen  218 KRHRRINPKN------REYDKFYIIN  237 (423)
T ss_pred             ccCcccCCCc------cccceEEEEe
Confidence            9999998864      6999999874

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.49  E-value=5.2e-08  Score=62.75  Aligned_cols=26  Identities=35%  Similarity=0.732  Sum_probs=25.0

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHH
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHI   71 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk   71 (389)
                      |.|.+|+|.|.|+++|++|++|++||
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            67999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.33  E-value=2.7e-07  Score=57.92  Aligned_cols=25  Identities=40%  Similarity=0.929  Sum_probs=24.1

Q ss_pred             cccccccCccCCHHHHHHHhhcHhH
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSH   70 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKH   70 (389)
                      |.|.+|+++|+|+++|++|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            5799999999999999999999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.19  E-value=1.3e-06  Score=58.80  Aligned_cols=32  Identities=19%  Similarity=0.525  Sum_probs=29.1

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      .|.|.+|++.|.+..+|++|++|++|+.++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            46799999999999999999999999998653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.97  E-value=2.8e-06  Score=88.07  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=27.9

Q ss_pred             cccchhhhhhhhhhcCCCCCCHHHHHHHHH
Q 016443            2 WKIFLFLLLPIKQVAGVPGVTEALFLARQA   31 (389)
Q Consensus         2 ~k~~~hr~NlKRKVA~LPPVTaE~F~~k~~   31 (389)
                      ||+||||||+||||++||++|+|+|.....
T Consensus        86 yksD~HR~N~Krkl~~~~ils~edFe~i~s  115 (591)
T KOG2505|consen   86 YKSDWHRFNTKRKLRGKPILSEEDFEGIIS  115 (591)
T ss_pred             HHHHHHHHHHHHHhcCCCcccHHHHHHhhh
Confidence            899999999999999999999999997643

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.3e-05  Score=82.61  Aligned_cols=30  Identities=33%  Similarity=0.628  Sum_probs=28.3

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHHhhh
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIMRAS   75 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~~~~   75 (389)
                      ++|.+|+|+|.|++|++||.+||||+++++
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~  322 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVA  322 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHH
Confidence            679999999999999999999999999865

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=97.15  E-value=0.00038  Score=70.56  Aligned_cols=33  Identities=15%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHHHhhhcC
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      .|+|..|...|.+....+.|++|-||+.|++..
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRk   35 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRK   35 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhH
Confidence            589999999999999999999999999998754

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.87  E-value=0.00058  Score=41.74  Aligned_cols=22  Identities=36%  Similarity=0.958  Sum_probs=20.7

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      |.|..|+|.|.+...|+.|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5799999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.35  E-value=0.0022  Score=38.64  Aligned_cols=22  Identities=41%  Similarity=1.038  Sum_probs=18.4

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      |.|.+|+++|.+..+|+.|+..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            5799999999999999999975

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.18  E-value=0.0028  Score=40.14  Aligned_cols=24  Identities=38%  Similarity=0.750  Sum_probs=21.5

Q ss_pred             ccccccccCccCCHHHHHHHhhcH
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSR   68 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SK   68 (389)
                      +|.|..|++.|.+..+|..|+++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            378999999999999999999654

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=96.08  E-value=0.008  Score=58.90  Aligned_cols=58  Identities=24%  Similarity=0.433  Sum_probs=39.9

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCC
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRH  240 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK~H  240 (389)
                      +..|.||++.|+-.=-+--|+...=                    |+|   -+.|-.|+   |.|.+...||.||+--++
T Consensus       187 ~c~C~iCGKaFSRPWLLQGHiRTHT--------------------GEK---PF~C~hC~---kAFADRSNLRAHmQTHS~  240 (279)
T KOG2462|consen  187 PCECGICGKAFSRPWLLQGHIRTHT--------------------GEK---PFSCPHCG---KAFADRSNLRAHMQTHSD  240 (279)
T ss_pred             CcccccccccccchHHhhccccccc--------------------CCC---CccCCccc---chhcchHHHHHHHHhhcC
Confidence            4567777777764444445665432                    233   36788887   889999999999988777


Q ss_pred             ccccC
Q 016443          241 CKIHF  245 (389)
Q Consensus       241 cki~~  245 (389)
                      .| .|
T Consensus       241 ~K-~~  244 (279)
T KOG2462|consen  241 VK-KH  244 (279)
T ss_pred             Cc-cc
Confidence            76 44

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.74  E-value=0.0049  Score=53.55  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=48.2

Q ss_pred             cccchhhhhhhhhhc--CCCCCCHHHHHHHHHHHHHhhhc-cCCCCccccccccCccCCHHHHHHHhhcHhHHHhhhcC
Q 016443            2 WKIFLFLLLPIKQVA--GVPGVTEALFLARQAALAQEKNK-NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus         2 ~k~~~hr~NlKRKVA--~LPPVTaE~F~~k~~~~a~~~~~-~~~~~~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      .+++-||-|.=|.-+  +|+-|-...=..+...+.++-.. --.-..|+|..|.+-|-+..+++.|.++|.||.++++.
T Consensus        11 ~~~~~hr~~r~r~~~r~dLDqi~~dl~~~~~kll~~~~D~dlPG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l   89 (129)
T KOG3408|consen   11 HRSNRHRINRTRGRARKDLDQIDEDLETQKGKLLNQEIDPDLPGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKEL   89 (129)
T ss_pred             ccchhHHHHhhhccCcccccccccccccccchhhcCcCCCCCCCCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhc
Confidence            345666766655444  45555554433332222222111 11223478999999999999999999999999998754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.73  E-value=0.0046  Score=49.76  Aligned_cols=30  Identities=37%  Similarity=0.799  Sum_probs=26.2

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHHHhh
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHIMRA   74 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk~~~   74 (389)
                      .+.|.+|++.|.|..+++.||+++.|+...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~   79 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN   79 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence            478999999999999999999999999853

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.59  E-value=0.0097  Score=41.65  Aligned_cols=31  Identities=26%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             cccccccCcc--CCHHHHHHHhhcHhHHHhhhc
Q 016443           46 YSCGLCGKGY--RSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        46 ~~C~~C~K~F--~S~nay~nHl~SKKHk~~~~~   76 (389)
                      |.|.+|++.|  .|...-++|.++.+|++++..
T Consensus         4 yyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    4 YYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             eecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            6799999999  555788999999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.25  E-value=0.015  Score=35.17  Aligned_cols=21  Identities=43%  Similarity=0.947  Sum_probs=19.7

Q ss_pred             cccccccCccCCHHHHHHHhh
Q 016443           46 YSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~   66 (389)
                      +.|..|+++|.+...+..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999998

>PLN02748 tRNA dimethylallyltransferase

Probab=94.88  E-value=0.017  Score=60.96  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=30.1

Q ss_pred             CccccccccC-ccCCHHHHHHHhhcHhHHHhhhcC
Q 016443           44 MTYSCGLCGK-GYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus        44 ~~~~C~~C~K-~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      ..|.|.+|++ ++..+..|+.|++|++||.+++..
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~  451 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRL  451 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHH
Confidence            4578999997 899999999999999999986643

>PTZ00448 hypothetical protein; Provisional

Probab=94.77  E-value=0.019  Score=58.43  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHHHhhhcC
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      .|+|..|+-.|.+.+.++.|++|-||+.|.+..
T Consensus       314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRk  346 (373)
T PTZ00448        314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRN  346 (373)
T ss_pred             CccccccccccCCHHHHHHHhhhhHHHHHHHHH
Confidence            578999999999999999999999999997754

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.24  E-value=0.0051  Score=39.34  Aligned_cols=25  Identities=36%  Similarity=0.824  Sum_probs=22.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCC
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEAKRH  240 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~dK~H  240 (389)
                      +.|..|+   +.|.|..++++||..|.|
T Consensus         2 ~~C~~C~---k~f~~~~~~~~H~~sk~H   26 (27)
T PF12171_consen    2 FYCDACD---KYFSSENQLKQHMKSKKH   26 (27)
T ss_dssp             CBBTTTT---BBBSSHHHHHCCTTSHHH
T ss_pred             CCcccCC---CCcCCHHHHHHHHccCCC
Confidence            5799998   899999999999999877

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.76  E-value=0.035  Score=35.05  Aligned_cols=25  Identities=44%  Similarity=0.953  Sum_probs=21.7

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  242 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~dK~Hck  242 (389)
                      +.|..|+   +.|.+..++..||  +.||+
T Consensus         2 ~~C~~C~---~~F~~~~~l~~H~--~~h~~   26 (27)
T PF13912_consen    2 FECDECG---KTFSSLSALREHK--RSHCS   26 (27)
T ss_dssp             EEETTTT---EEESSHHHHHHHH--CTTTT
T ss_pred             CCCCccC---CccCChhHHHHHh--HHhcC
Confidence            4799998   8999999999999  66664

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.42  E-value=0.017  Score=35.85  Aligned_cols=24  Identities=38%  Similarity=0.866  Sum_probs=21.9

Q ss_pred             eeeecCCCCCCCCCHHHHHHHHHhCCC
Q 016443          214 MCLYCNDRCHPFNSLEAVRKHMEAKRH  240 (389)
Q Consensus       214 ~Cl~C~~~~k~F~s~eav~~HM~dK~H  240 (389)
                      .|-.|+   +.|.|...+++||+.+.|
T Consensus         2 ~C~~C~---~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    2 YCDICN---KSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EETTTT---EEESSHHHHHHHHTTHHH
T ss_pred             CCCCCC---CCcCCHHHHHHHHCcCCC
Confidence            688998   899999999999999876

>PHA02768 hypothetical protein; Provisional

Probab=92.61  E-value=0.071  Score=40.41  Aligned_cols=23  Identities=35%  Similarity=0.817  Sum_probs=21.8

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|+...++..|+++
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~   27 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK   27 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh
Confidence            47899999999999999999998

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.49  E-value=0.053  Score=32.87  Aligned_cols=22  Identities=27%  Similarity=0.762  Sum_probs=19.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...++.||+.
T Consensus         1 y~C~~C~---~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICG---KSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTT---EEESSHHHHHHHHHH
T ss_pred             CCCCCCC---CccCCHHHHHHHHhH
Confidence            3799998   899999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=91.94  E-value=0.07  Score=38.64  Aligned_cols=27  Identities=37%  Similarity=0.640  Sum_probs=22.4

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHHH
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHIM   72 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk~   72 (389)
                      .|+|..|++.|.....+..|+++ .|.+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg~   27 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHKQ   27 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcCC
Confidence            37899999999999999999954 3443

>PF13821 DUF4187: Domain of unknown function (DUF4187)

Probab=91.93  E-value=0.19  Score=38.00  Aligned_cols=31  Identities=23%  Similarity=0.585  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHH
Q 016443          197 DPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRK  233 (389)
Q Consensus       197 d~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~  233 (389)
                      -+..||.|||.+   .+-|+||+   -+|.|.+.+..
T Consensus        15 ~L~~l~~YLR~~---~~YC~~Cg---~~Y~d~~dL~~   45 (55)
T PF13821_consen   15 RLDKLLSYLREE---HNYCFWCG---TKYDDEEDLER   45 (55)
T ss_pred             HHHHHHHHHHhh---CceeeeeC---CccCCHHHHHh
Confidence            467899999998   46999998   57888877653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=91.22  E-value=0.13  Score=30.72  Aligned_cols=22  Identities=36%  Similarity=0.822  Sum_probs=17.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+..+++.||..
T Consensus         1 ~~C~~C~---~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICG---KSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS----EESSHHHHHHHHHH
T ss_pred             CCCcCCC---CcCCcHHHHHHHHHh
Confidence            3799998   899999999999975

...

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.90  E-value=0.27  Score=36.40  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=23.8

Q ss_pred             ccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           47 SCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        47 ~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      +|+.|...|.+   |..|+.|++|+.-+.+
T Consensus         7 YCE~C~~ky~~---l~~Hi~s~~Hr~FA~~   33 (49)
T PF07535_consen    7 YCENCRVKYDD---LEEHIQSEKHRKFAEN   33 (49)
T ss_pred             cCccccchhhh---HHHHhCCHHHHHHHcC
Confidence            59999999986   8999999999997654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=89.45  E-value=0.44  Score=48.62  Aligned_cols=64  Identities=19%  Similarity=0.310  Sum_probs=54.9

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhc-CCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 016443          160 DPACCFM--CDLPHDAIENCMVHMHKCH-GFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       160 ~~~~CLF--C~~~s~s~e~nl~HM~~~H-~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~  236 (389)
                      +.-.|-|  |.....+......||.+.| ||.-|                     .+.|-+|.   |.|.+=.+|-.|++
T Consensus       318 ~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~---------------------~Y~CH~Cd---r~ft~G~~L~~HL~  373 (467)
T KOG3608|consen  318 TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPI---------------------LYACHCCD---RFFTSGKSLSAHLM  373 (467)
T ss_pred             cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCC---------------------ceeeecch---hhhccchhHHHHHH
Confidence            3456888  9999999999999999999 76533                     25899998   88999999999999


Q ss_pred             hCCCccccCCC
Q 016443          237 AKRHCKIHFGD  247 (389)
Q Consensus       237 dK~Hcki~~~~  247 (389)
                      .|.-.+||++-
T Consensus       374 kkH~f~~PsGh  384 (467)
T KOG3608|consen  374 KKHGFRLPSGH  384 (467)
T ss_pred             HhhcccCCCCC
Confidence            99999999864

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.35  E-value=0.18  Score=33.49  Aligned_cols=28  Identities=36%  Similarity=0.708  Sum_probs=25.0

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 016443          212 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  242 (389)
Q Consensus       212 ~~~Cl~C~~~~k~F~s~eav~~HM~dK~Hck  242 (389)
                      .+.|..|+   +.|.+..++++|+..+.|-+
T Consensus         3 ~~~C~~C~---~~~~~~~~~~~H~~gk~H~~   30 (35)
T smart00451        3 GFYCKLCN---VTFTDEISVEAHLKGKKHKK   30 (35)
T ss_pred             CeEccccC---CccCCHHHHHHHHChHHHHH
Confidence            46899999   89999999999999998854

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PHA00733 hypothetical protein

Probab=88.81  E-value=0.64  Score=40.80  Aligned_cols=29  Identities=17%  Similarity=0.419  Sum_probs=25.4

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCC
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFI  189 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~I  189 (389)
                      +..|-.|+..+........||.+.|+.-+
T Consensus        99 ~~~C~~CgK~F~~~~sL~~H~~~~h~~~~  127 (128)
T PHA00733         99 SKVCPVCGKEFRNTDSTLDHVCKKHNICV  127 (128)
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcCccc
Confidence            35799999999999999999999998643

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=88.81  E-value=0.3  Score=36.20  Aligned_cols=28  Identities=32%  Similarity=0.421  Sum_probs=23.6

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      -+|+.|...|.   .|..|+.|++|+.-+..
T Consensus         6 GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~   33 (49)
T smart00586        6 GYCENCREKYD---DLETHLLSEKHRRFAEN   33 (49)
T ss_pred             cccccHhHHHh---hHHHHhccHHHHHHHcC
Confidence            45999999998   57889999999996553

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=88.15  E-value=0.73  Score=47.05  Aligned_cols=70  Identities=17%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCc----ccc----cCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHH
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDV----EYL----KDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVR  232 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~----eyl----vd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~  232 (389)
                      .|..|+...+...++-.||...|+=+=|-.    +|+    .|+.+-+.|=.+-+   +.|-.  |.   -.|++...++
T Consensus       265 kCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~---y~C~h~~C~---~s~r~~~q~~  338 (467)
T KOG3608|consen  265 KCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTV---YQCEHPDCH---YSVRTYTQMR  338 (467)
T ss_pred             cccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccc---eecCCCCCc---HHHHHHHHHH
Confidence            378888888888888889888888766655    232    35555555444333   57877  88   4678999999


Q ss_pred             HHHHhC
Q 016443          233 KHMEAK  238 (389)
Q Consensus       233 ~HM~dK  238 (389)
                      .||+.-
T Consensus       339 ~H~~ev  344 (467)
T KOG3608|consen  339 RHFLEV  344 (467)
T ss_pred             HHHHHh
Confidence            999874

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=87.25  E-value=0.24  Score=42.40  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=28.9

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      ++|--|.+-|-|+.|+..|.++|-|+.++..
T Consensus        56 hYCieCaryf~t~~aL~~HkkgkvHkRR~Ke   86 (126)
T COG5112          56 HYCIECARYFITEKALMEHKKGKVHKRRAKE   86 (126)
T ss_pred             eeeehhHHHHHHHHHHHHHhccchhHHHHHH
Confidence            5799999999999999999999999998764

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=86.07  E-value=0.79  Score=42.34  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=44.1

Q ss_pred             hhcCCCCCCHHHHHHH---HHHH-HHhhhc-------cCCCCccccccccCccCCHHHHHHHhhcHhHHHhhh
Q 016443           14 QVAGVPGVTEALFLAR---QAAL-AQEKNK-------NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRAS   75 (389)
Q Consensus        14 KVA~LPPVTaE~F~~k---~~~~-a~~~~~-------~~~~~~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~   75 (389)
                      .-|.=|||+.|...++   +..- .-++..       .+....|+|.+|+-+|...-.|-.||+-|+|..+..
T Consensus        33 ~~k~~~~vqre~L~~rdykvdl~sKLgkt~vitk~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlg  105 (193)
T KOG4727|consen   33 LKKDGPPVQREHLKHRDYKVDLESKLGKTVVITKSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLG  105 (193)
T ss_pred             HhhcCCchhHHHHhhhhhhhHhHhhccceeEeccCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHh
Confidence            3467799998887765   1111 111111       123456899999999999999999999999999754

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.70  E-value=0.89  Score=49.96  Aligned_cols=80  Identities=20%  Similarity=0.392  Sum_probs=59.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCc-----cc------ccCHHHHHHHHH-----HHhcCC-ceeeecCCCC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-----EY------LKDPKGLLTYLG-----LKVKRD-FMCLYCNDRC  222 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~-----ey------lvd~~gLl~YL~-----~kI~~~-~~Cl~C~~~~  222 (389)
                      .-..|++| ..+.+++.+-.||...|+++.-..     .+      +|=...|...+.     .+...| -+|++|+   
T Consensus       114 ~~~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~---  189 (669)
T KOG2231|consen  114 NKKECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCH---  189 (669)
T ss_pred             ccCCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhh---
Confidence            34579999 888999999999999999987333     11      355566666664     444555 6899999   


Q ss_pred             CCCCCHHHHHHHHHh-CCCccc
Q 016443          223 HPFNSLEAVRKHMEA-KRHCKI  243 (389)
Q Consensus       223 k~F~s~eav~~HM~d-K~Hcki  243 (389)
                      ..|-....++.||+- .-+|.+
T Consensus       190 ~~fld~~el~rH~~~~h~~chf  211 (669)
T KOG2231|consen  190 ERFLDDDELYRHLRFDHEFCHF  211 (669)
T ss_pred             hhhccHHHHHHhhccceeheee
Confidence            678999999999983 445544

>PHA02768 hypothetical protein; Provisional

Probab=85.22  E-value=0.55  Score=35.61  Aligned_cols=26  Identities=15%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             CCceeeecCCCCCCCCCHHHHHHHHHhCCCc
Q 016443          211 RDFMCLYCNDRCHPFNSLEAVRKHMEAKRHC  241 (389)
Q Consensus       211 ~~~~Cl~C~~~~k~F~s~eav~~HM~dK~Hc  241 (389)
                      .|+.|-.|+   +.|....+|+.||+.  |.
T Consensus         4 ~~y~C~~CG---K~Fs~~~~L~~H~r~--H~   29 (55)
T PHA02768          4 LGYECPICG---EIYIKRKSMITHLRK--HN   29 (55)
T ss_pred             cccCcchhC---CeeccHHHHHHHHHh--cC
Confidence            468999998   899999999999998  55

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.42  E-value=0.63  Score=44.88  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      ..|.+|+--.. ++-|+.|++||+|++++.+
T Consensus        36 l~C~vCn~piK-p~lW~vHvnsKkHre~id~   65 (264)
T KOG3032|consen   36 LVCRVCNVPIK-PSLWDVHVNSKKHREAIDS   65 (264)
T ss_pred             eeEEEecCccc-HHHHHHHhccHHHHHHHHH
Confidence            57999999999 9999999999999997543

>PHA00616 hypothetical protein

Probab=83.84  E-value=0.54  Score=34.07  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=27.2

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCccc
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEY  194 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~ey  194 (389)
                      -+|+.|+..+........||.+.||=.--..+|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            479999999999999999999999964333343

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=83.22  E-value=0.89  Score=43.36  Aligned_cols=63  Identities=21%  Similarity=0.386  Sum_probs=40.1

Q ss_pred             CCCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 016443          159 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       159 ~~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~  236 (389)
                      +.|-.|-.|++.+...-..-.|..+.||-           ..-..|-.++-. .++|--|+   -.-...+..-.|..
T Consensus       171 vrpykc~~c~kaftqrcsleshl~kvhgv-----------~~~yaykerr~k-l~vcedcg---~t~~~~e~~~~h~~  233 (267)
T KOG3576|consen  171 VRPYKCSLCEKAFTQRCSLESHLKKVHGV-----------QHQYAYKERRAK-LYVCEDCG---YTSERPEVYYLHLK  233 (267)
T ss_pred             ccccchhhhhHHHHhhccHHHHHHHHcCc-----------hHHHHHHHhhhh-eeeecccC---CCCCChhHHHHHHH
Confidence            35667888888887777777788888884           222345555544 46788886   34445555555554

>PHA00732 hypothetical protein

Probab=82.44  E-value=0.95  Score=36.59  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      |.|..|++.|.+..+++.|++.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~   23 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARR   23 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhc
Confidence            6799999999999999999873

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=82.38  E-value=2.1  Score=31.67  Aligned_cols=49  Identities=14%  Similarity=0.317  Sum_probs=37.3

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      -.|.||+. .-++..++.|....|...   .                  ....|..|..   .  ....+..||.-
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~---~------------------~~v~CPiC~~---~--~~~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSE---S------------------KNVVCPICSS---R--VTDNLIRHLNS   51 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCC---C------------------CCccCCCchh---h--hhhHHHHHHHH
Confidence            36999999 778999999999999863   1                  1248999973   2  33488899874

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>smart00355 ZnF_C2H2 zinc finger

Probab=82.10  E-value=1  Score=26.81  Aligned_cols=20  Identities=35%  Similarity=0.707  Sum_probs=18.5

Q ss_pred             eeeecCCCCCCCCCHHHHHHHHH
Q 016443          214 MCLYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       214 ~Cl~C~~~~k~F~s~eav~~HM~  236 (389)
                      .|..|+   +.|.+...++.||+
T Consensus         2 ~C~~C~---~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECG---KVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCc---chhCCHHHHHHHHH
Confidence            688998   89999999999998

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=81.80  E-value=0.23  Score=48.86  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=28.2

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHHHhhh
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAS   75 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~   75 (389)
                      -|+|.+|+|.|+++|.|+-|..|-.|.....
T Consensus        25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~   55 (309)
T KOG2837|consen   25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLL   55 (309)
T ss_pred             HHHHHHHHHHhccccccccccCCHHHHHHHH
Confidence            4789999999999999999999999998544

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=81.33  E-value=0.85  Score=27.92  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=18.3

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHG  186 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~  186 (389)
                      .|-+|+..+. ......||...|+
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCcCC-HHHHHHHHHhhCc
Confidence            4899999997 7788899999986

>PHA00732 hypothetical protein

Probab=80.68  E-value=1.5  Score=35.43  Aligned_cols=45  Identities=18%  Similarity=0.424  Sum_probs=36.3

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .|-.|+..+.+......||...|.                         +..|-.|+   +.|.   .+..|+..|
T Consensus         3 ~C~~Cgk~F~s~s~Lk~H~r~~H~-------------------------~~~C~~Cg---KsF~---~l~~H~~~~   47 (79)
T PHA00732          3 KCPICGFTTVTLFALKQHARRNHT-------------------------LTKCPVCN---KSYR---RLNQHFYSQ   47 (79)
T ss_pred             cCCCCCCccCCHHHHHHHhhcccC-------------------------CCccCCCC---CEeC---Chhhhhccc
Confidence            599999999999999999986664                         12699998   7777   588888666

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=80.66  E-value=1.3  Score=28.06  Aligned_cols=21  Identities=24%  Similarity=0.725  Sum_probs=17.9

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|..|+.+| ...++..|++.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 88899999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	98.59
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.08
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	97.94
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	97.8
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.78
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	97.71
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.6
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	97.56
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.54
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	97.38
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.35
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.23
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.22
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.17
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.15
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.15
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	97.14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.0
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	96.77
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.71
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.59
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.57
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	96.44
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.37
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.34
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.34
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.29
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.29
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.22
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.15
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	95.91
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	95.88
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	95.87
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	95.77
1ard_A	29	Yeast transcription factor ADR1; transcription reg	95.71
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	95.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	95.66
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	95.63
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	95.57
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	95.57
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.55
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.53
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	95.51
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	95.5
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	94.47
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	95.47
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	95.45
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	95.43
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	95.43
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	95.37
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	95.37
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	95.36
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	95.35
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.29
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.28
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.26
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.26
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	95.19
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	95.16
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.15
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	95.11
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	95.09
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	95.08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.06
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.05
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	95.03
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	95.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	94.99
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.94
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	93.93
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	94.89
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.88
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	93.86
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.85
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.82
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.81
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	94.79
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	94.77
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.74
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.74
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	94.73
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.73
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.7
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.7
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.69
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	94.69
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	94.67
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.63
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.62
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	94.61
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.59
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.58
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	94.57
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.56
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	94.55
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	94.55
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.54
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.54
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	94.54
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.53
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	94.53
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.52
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.52
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.52
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.52
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.5
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.5
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	94.49
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.48
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.48
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.48
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.48
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.47
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.43
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.43
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.43
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.43
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.41
1paa_A	30	Yeast transcription factor ADR1; transcription reg	94.4
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.39
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.38
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.38
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.38
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.37
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.36
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.36
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.35
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.35
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.35
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.34
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.34
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.33
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	94.33
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.32
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.31
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.3
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.29
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.28
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.27
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.27
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.26
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	94.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.24
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	94.24
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.23
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	94.23
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.23
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.23
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	94.22
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.22
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	94.22
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	94.22
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.2
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	94.19
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.19
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.12
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.12
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	94.11
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.1
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.08
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.06
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	93.99
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.99
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.97
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	93.95
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.94
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.94
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.86
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	93.84
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.81
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.74
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	93.74
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	93.66
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	93.65
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	93.65
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	93.64
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	93.6
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.56
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	93.55
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.53
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.45
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	93.38
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	93.36
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	93.3
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	93.22
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	93.19
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.11
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	93.09
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	93.07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	92.98
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	92.88
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	92.85
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	92.7
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.62
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	92.54
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	92.34
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	92.32
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	92.32
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	91.97
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	91.9
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	91.56
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	91.35
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	91.21
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	90.47
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	90.42
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	90.29
2epa_A	72	Krueppel-like factor 10; transforming growth facto	90.23
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	90.02
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.02
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	89.92
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	89.87
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	89.51
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	89.38
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	89.3
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	89.01
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	88.86
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	88.57
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	88.32
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	87.75
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	87.4
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	86.13
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	85.82
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	85.34
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	85.19
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.19
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	85.05
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	84.66
1ard_A	29	Yeast transcription factor ADR1; transcription reg	84.57
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	84.17
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	83.92
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	84.35
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	83.67
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	83.48
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	83.2
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.2
2epa_A	72	Krueppel-like factor 10; transforming growth facto	83.08
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.06
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.64
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.64
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.3
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.11
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	81.97
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	81.79
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	82.49
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	81.36
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	82.12
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	81.0
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	80.94
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	80.86
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.68

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=98.59  E-value=9e-09  Score=88.14  Aligned_cols=50  Identities=24%  Similarity=0.363  Sum_probs=45.1

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcc--c-c--cCHHHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE--Y-L--KDPKGLLTYLGLKV  209 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~e--y-l--vd~~gLl~YL~~kI  209 (389)
                      .++.||||+..+.+++..++||...|+|+|....  . |  |+..+||||||+++
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~i~~~~~LDfY~~IKLINyIR~~~   68 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKN   68 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHTC
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhcCCCHHHHHHhcCCCceEEEEEEEeeeccc
Confidence            4689999999999999999999999999999864  2 3  99999999999884

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.08  E-value=1.6e-06  Score=74.27  Aligned_cols=73  Identities=12%  Similarity=0.116  Sum_probs=47.0

Q ss_pred             cccchhhhhhhhhhcCCCCCCHHHHHHHHHHHHHhhhccCCCCccccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443            2 WKIFLFLLLPIKQVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus         2 ~k~~~hr~NlKRKVA~LPPVTaE~F~~k~~~~a~~~~~~~~~~~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      |++.+|+.||++.+++.+ ++...+..++.. ............|.|.+|++.|+|+..+++|+++|+|+.++.+
T Consensus        52 ~~gkkH~~~v~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~  124 (127)
T 1zu1_A           52 YQSRKHANKVRRYMAINQ-GEDSVPAKKFKA-APAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRL  124 (127)
T ss_dssp             HHCHHHHHHHHHHHHHTT-CCCCCSCCCCSC-CSSCCSSCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHH
T ss_pred             HCcHHHHHHHHHHhcccC-cccCCCCCccCC-CccccccCCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHH
Confidence            678899999998886321 000000000000 0000111234567899999999999999999999999998765

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=97.94  E-value=9e-06  Score=61.31  Aligned_cols=49  Identities=16%  Similarity=0.321  Sum_probs=42.1

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|.+|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        31 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           31 PCQYCGKRFHQKSDMKKHTFIHTGE-----------------------KPHKCQVCG---KAFSQSSNLITHSRK   79 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHTC-----------------------CCEECTTTS---CEESSHHHHHHHHHH
T ss_pred             eCCcCChhhCCHHHHHHHHHHhcCC-----------------------CCCcCCCcc---hhhCChHHHHHHHHh
Confidence            5999999999999999999876651                       136899998   899999999999974

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=97.80  E-value=5.5e-05  Score=60.10  Aligned_cols=50  Identities=16%  Similarity=0.256  Sum_probs=42.0

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      -.|-.|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        46 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   95 (106)
T 2ee8_A           46 YTCDICHKAFRRQDHLRDHRYIHSKE-----------------------KPFKCQECG---KGFCQSRTLAVHKTL   95 (106)
T ss_dssp             CBCSSSCCBCSCHHHHHHHGGGSCCC-----------------------CTTSCSSSC---CCCSSHHHHHHHHHH
T ss_pred             cCCCCccchhCCHHHHHHHHHHhCCC-----------------------CCeECCCcC---CcccCHHHHHHHHHH
Confidence            35999999999999999999865541                       136899998   899999999999964

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.78  E-value=2.2e-05  Score=61.09  Aligned_cols=52  Identities=17%  Similarity=0.489  Sum_probs=43.4

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .|-.|+..+.+......||...|+-.                     ...+.|..|+   +.|.+...|+.||+..
T Consensus        37 ~C~~C~~~f~~~~~l~~H~~~h~~~~---------------------~~~~~C~~C~---~~f~~~~~L~~H~~~~   88 (95)
T 2yt9_A           37 SCPVCGLRFKRKDRMSYHVRSHDGSV---------------------GKPYICQSCG---KGFSRPDHLNGHIKQV   88 (95)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHHCCCC---------------------CSSBCCSSSC---CCBSSHHHHHHHHHHT
T ss_pred             cCCCCCCccCCHHHHHHHHHHhcCCC---------------------CCceECCCcc---chhCCHHHHHHHHHHh
Confidence            59999999999999999998776631                     1236899998   8999999999999753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.74  E-value=0.00014  Score=58.90  Aligned_cols=53  Identities=19%  Similarity=0.343  Sum_probs=43.6

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .+-.|-+|+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+..
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~~  117 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVSHTGE-----------------------MPYKCSSCS---QQFMQKKDLQSHMIKL  117 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS-----------------------CSEECSSSC---CEESSHHHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCC-----------------------CCccCCCcc---chhCCHHHHHHHHHHH
Confidence            3467999999999999999999865541                       136899998   8999999999999853

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.71  E-value=3.5e-05  Score=60.00  Aligned_cols=50  Identities=18%  Similarity=0.319  Sum_probs=41.9

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      -.|-.|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        37 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   86 (96)
T 2dmd_A           37 YKCKTCDYAAADSSSLNKHLRIHSDE-----------------------RPFKCQICP---YASRNSSQLTVHLRS   86 (96)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSCCC-----------------------CCEECSSSS---CEESSHHHHHHHHTT
T ss_pred             EeCCCCCCccCCHHHHHHHHHHhCCC-----------------------CCccCCCCC---CccCCHHHHHHHHHH
Confidence            35999999999999999999865441                       136899998   899999999999964

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.60  E-value=2.2e-05  Score=67.35  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHHHHHHH--hhhcc---CCCCccccccccCccCCHHHHHHHhhcHhHHHhhhcC
Q 016443            7 FLLLPIKQVAGVPGVTEALFLARQAALAQ--EKNKN---ATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus         7 hr~NlKRKVA~LPPVTaE~F~~k~~~~a~--~~~~~---~~~~~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      |+--.||+..+|-=|-++.-.+.......  .....   .....|+|..|+|.|.+.++|+.|++||+|+.++.+.
T Consensus         7 ~~~~tkrr~rDlDqI~~dl~~e~~~k~~~~~~~~~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A            7 HLEKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             -----------------------------CCSCSSCSSSGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHhhcccCCCHHHHHHHHHhHHHHHhhccccccccccCCCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHh
Confidence            44456788888877765543222222111  11111   1234588999999999999999999999999987653

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.56  E-value=5.1e-05  Score=60.79  Aligned_cols=49  Identities=18%  Similarity=0.440  Sum_probs=42.0

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|-+|+..+.+......||...|+-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        39 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           39 GCGVCGKKFKMKHHLVGHMKIHTGI-----------------------KPYECNICA---KRFMWRDSFHRHVTS   87 (110)
T ss_dssp             ECTTTSCEESSSHHHHHHHTTTCCC-----------------------CCEECSSSC---CEESCHHHHHHHHHH
T ss_pred             cCCCCCcccCCHHHHHHHHHHcCCC-----------------------CCeeCCCCc---chhcCHHHHHHHHHH
Confidence            5999999999999999999865541                       136899998   899999999999975

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.54  E-value=0.00022  Score=57.02  Aligned_cols=47  Identities=26%  Similarity=0.357  Sum_probs=39.4

Q ss_pred             cccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          164 CFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       164 CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      |-.|+..+.+......||.  |.-                   ++   -+.|..|+   +.|.+...|+.||+.
T Consensus        45 C~~C~~~f~~~~~l~~H~~--H~~-------------------~~---~~~C~~C~---~~f~~~~~L~~H~~~   91 (107)
T 1wjp_A           45 CPYCSLRFFSPELKQEHES--KCE-------------------YK---KLTCLECM---RTFKSSFSIWRHQVE   91 (107)
T ss_dssp             CTTTCCCBSSHHHHHHHHH--HCS-------------------TG---GGEEGGGT---EECSSHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHH--cCC-------------------CC---CccCcccc---chhCCHHHHHHHHHH
Confidence            8899999999999999994  641                   11   26999998   899999999999974

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=97.38  E-value=0.00015  Score=61.75  Aligned_cols=49  Identities=22%  Similarity=0.416  Sum_probs=37.4

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|-.|+..+.+...+..||.. |.-                   +   .-+.|-.|+   +.|.+...|+.||+.
T Consensus        52 ~C~~C~k~F~~~~~L~~H~~~-H~~-------------------~---k~~~C~~C~---k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           52 PCRYCEKVFPLAEYRTKHEIH-HTG-------------------E---RRYQCLACG---KSFINYQFMSSHIKS  100 (133)
T ss_dssp             ECSSSSCEESSHHHHHHHHHH-HHT-------------------C---CCEEESSSC---CEESSHHHHHHHHHH
T ss_pred             eCCccCeecccccchhhhccc-cCC-------------------C---ccccCCCCC---CCcCCHHHHHHHhHH
Confidence            488899988888888899864 521                   1   135788887   788999999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.35  E-value=0.00021  Score=54.64  Aligned_cols=49  Identities=18%  Similarity=0.458  Sum_probs=41.8

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|-+|+..+.+......||...+|-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        36 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   84 (90)
T 1a1h_A           36 QCRICMRNFSRSDHLTTHIRTHTGE-----------------------KPFACDICG---RKFARSDERKRHTKI   84 (90)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESSHHHHHHHHGG
T ss_pred             cCCCCCcccCCHHHHHHHHHHcCCC-----------------------CCccCCCCC---chhCCHHHHHHHHHH
Confidence            5999999999999999999866541                       136899998   899999999999973

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.23  E-value=0.00055  Score=57.91  Aligned_cols=26  Identities=12%  Similarity=0.349  Sum_probs=22.6

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 016443           42 TPMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        42 ~~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      +...|.|..|+|.|.+...|+.|++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~   47 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTM   47 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHT
T ss_pred             hhcccccccCCcccCCHHHHHHHHHh
Confidence            34568899999999999999999874

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.22  E-value=0.00045  Score=53.85  Aligned_cols=49  Identities=27%  Similarity=0.524  Sum_probs=40.4

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|.+  |+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+-
T Consensus        47 ~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           47 KCTWEGCDWRFARSDELTRHYRKHTGA-----------------------KPFQCGVCN---RSFSRSDHLALHMKR   97 (100)
T ss_dssp             ECCSSSCCCEESSHHHHHHHHHHHTSC-----------------------CSCBCSSSC---CBCSSHHHHHHHHHH
T ss_pred             eCCCCCCCCccCCHHHHHHHHHHhCCC-----------------------CCeECCCCc---CccCCHHHHHHHHHH
Confidence            4765  999999999999999865541                       136899998   899999999999974

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.19  E-value=0.00025  Score=54.14  Aligned_cols=49  Identities=24%  Similarity=0.518  Sum_probs=40.4

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|.+  |+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus        37 ~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           37 HCDWDGCGWKFARSDELTRHYRKHTGH-----------------------RPFQCQKCD---RAFSRSDHLALHMKR   87 (89)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHHHHHCC-----------------------CCEECSSSS---CEESSHHHHHHHGGG
T ss_pred             CCCCCCCCCccCCHHHHHHHHHHcCCC-----------------------CCccCCCCC---cccCCHHHHHHHHHh
Confidence            4775  999999999999999765541                       136899998   899999999999963

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.17  E-value=0.00034  Score=61.39  Aligned_cols=51  Identities=22%  Similarity=0.445  Sum_probs=42.0

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +-.|-.|+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus       133 ~~~C~~C~~~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~  183 (190)
T 2i13_A          133 PYKCPECGKSFSREDNLHTHQRTHTGE-----------------------KPYKCPECG---KSFSRRDALNVHQRT  183 (190)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESSHHHHHHHHTT
T ss_pred             CeECCCCCcccCCHHHHHHHHHhcCCC-----------------------CCeECCCCC---CccCCHHHHHHHHHh
Confidence            456889999999988999999876551                       136899998   899999999999963

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.15  E-value=0.00057  Score=51.39  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee---cCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY---CNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~---C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|-.  |+..+.+......||...+|                          +.|-.   |+   +.|.+...|+.||+.
T Consensus        33 ~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------------~~C~~~~~C~---~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           33 ECPHEGCDKRFSLPSRLKRHEKVHAG--------------------------YPCKKDDSCS---FVGKTWTLYLKHVAE   83 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHS--------------------------EECCSCSSCC---CEESSHHHHHHHHHH
T ss_pred             eCCCCCCcCccCCHHHHHHHHHHhCC--------------------------CCCCCCCCCC---CccCCHHHHHHHHHh
Confidence            4877  99999999999999987665                          57888   87   899999999999974

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.15  E-value=0.0016  Score=52.18  Aligned_cols=50  Identities=20%  Similarity=0.458  Sum_probs=40.3

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCcee--eecCCCCCCCCCHHHHHHHHH
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMC--LYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~C--l~C~~~~k~F~s~eav~~HM~  236 (389)
                      +-.|-.|+..+.+......||...+|-                       ..+.|  ..|+   +.|.+...|+.||+
T Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           66 PFQCKTCQRKFSRSDHLKTHTRTHTGE-----------------------KPFSCRWPSCQ---KKFARSDELVRHHN  117 (119)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHTC-----------------------CCEECCSTTCC---CEESSHHHHHHHHH
T ss_pred             CccCCccCchhCCHHHHHHHHHHhcCC-----------------------CCeeCCCCCCc---cccCCHHHHHHHHh
Confidence            457889999999988888999865541                       13678  6798   89999999999996

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.15  E-value=4.2e-05  Score=59.23  Aligned_cols=48  Identities=8%  Similarity=0.083  Sum_probs=41.1

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|-.|+..+.+......||...|+.                        ...|-.|+   +.|.+...|+.||+.
T Consensus        33 ~C~~C~k~f~~~~~L~~H~~~h~~~------------------------~~~c~~C~---~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           33 ACDICGRKFARSDERKRHRDIQHIL------------------------PILEDKVE---ELLSKNYHLENEVAR   80 (88)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHTHH------------------------HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             cCCCCCCccCCHHHHHHHHHHhCCC------------------------cchHHHHH---HHHHHHhhhHHHHHH
Confidence            5889999999999999999988741                        13688898   889999999999975

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.14  E-value=0.00017  Score=58.10  Aligned_cols=24  Identities=25%  Similarity=0.599  Sum_probs=21.9

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        18 ~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           18 SKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             CCEECCccCchhcCHHHHHHHHHH
Confidence            468999999999999999999974

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.06  E-value=0.0006  Score=55.37  Aligned_cols=51  Identities=24%  Similarity=0.502  Sum_probs=40.4

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 016443          161 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       161 ~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM~  236 (389)
                      +-.|.+  |+..+.+......||...+|-                       ..+.|.+  |+   +.|.+...|+.||+
T Consensus        62 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~L~~H~~  115 (124)
T 1ubd_C           62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD-----------------------RPYVCPFDGCN---KKFAQSTNLKSHIL  115 (124)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCC-----------------------CCCCCCSTTCC---CCCSSTTTTHHHHH
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCCC-----------------------CceECCCCCCC---CccCCHHHHHHHHH
Confidence            456887  999999999999999765551                       1368876  98   88999999999997


Q ss_pred             h
Q 016443          237 A  237 (389)
Q Consensus       237 d  237 (389)
                      .
T Consensus       116 ~  116 (124)
T 1ubd_C          116 T  116 (124)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.00  E-value=0.00074  Score=59.19  Aligned_cols=51  Identities=18%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +-.|-.|+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~  155 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTGE-----------------------KPYKCPECG---KSFSREDNLHTHQRT  155 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESCHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCCC-----------------------CCeECCCCC---cccCCHHHHHHHHHh
Confidence            456888888888888888888765541                       236899998   899999999999975

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=96.77  E-value=0.00077  Score=54.70  Aligned_cols=48  Identities=21%  Similarity=0.403  Sum_probs=39.6

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM~  236 (389)
                      .|-.|+..+.+......||...++-                       ..+.|.+  |+   +.|.+...|+.||+
T Consensus        36 ~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~l~~H~~   85 (124)
T 1ubd_C           36 VCAECGKAFVESSKLKRHQLVHTGE-----------------------KPFQCTFEGCG---KRFSLDFNLRTHVR   85 (124)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSCC-----------------------CCEECCSTTCC---CEESCHHHHHHHHH
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCC-----------------------CCeeCCCCCCc---CccCCHHHHHHHHH
Confidence            4889999999999999999865541                       2368987  98   89999999999986

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.71  E-value=0.003  Score=53.04  Aligned_cols=50  Identities=26%  Similarity=0.569  Sum_probs=36.9

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 016443          161 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       161 ~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM~  236 (389)
                      +-.|-+  |+..+.+......||...+|-                       ..+.|-.  |+   +.|.+...|+.||+
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~L~~H~~  120 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRSHTGE-----------------------KPYMCEHEGCS---KAFSNASDRAKHQN  120 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC-----------------------CCEECCSTTCC---CEESSSSTTHHHHH
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHHcCCC-----------------------CCeeCCCCCCC---CccCCHHHHHHHHH
Confidence            456776  888888888888888754331                       1368887  87   78999999999984

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.61  E-value=0.0016  Score=45.53  Aligned_cols=24  Identities=17%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHG  186 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~  186 (389)
                      .|.+|+..+........||...|+
T Consensus        34 ~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           34 KCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCCcchhCCHHHHHHHHHHhcC
Confidence            589999999999999999998885

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.59  E-value=0.0014  Score=55.79  Aligned_cols=52  Identities=17%  Similarity=0.170  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCCccccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           19 PGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        19 PPVTaE~F~~k~~~~a~~~~~~~~~~~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      |||..++-.....    +..  .....+.|.+|+.+|.|...++.|.++|+|+.++..
T Consensus        12 ~~~~~~~~~~~~~----e~~--~~~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~   63 (127)
T 1zu1_A           12 LPVGKDAVNSLIR----ENS--HIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRR   63 (127)
T ss_dssp             CCCSHHHHHHHHH----HTT--TTBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHH
T ss_pred             cccchHHHhhhhc----ccc--ccCCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHH
Confidence            5687776664422    111  122346799999999999999999999999998664

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.57  E-value=0.0032  Score=55.04  Aligned_cols=48  Identities=21%  Similarity=0.312  Sum_probs=36.2

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee---cCCCCCCCCCHHHHHHHH
Q 016443          161 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY---CNDRCHPFNSLEAVRKHM  235 (389)
Q Consensus       161 ~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~---C~~~~k~F~s~eav~~HM  235 (389)
                      +-.|-+  |+..+.+......||...+|                          +.|..   |+   +.|.+...|+.||
T Consensus       134 ~~~C~~~~C~k~F~~~~~L~~H~~~H~~--------------------------~~C~~~~~C~---~~f~~~~~l~~H~  184 (190)
T 1tf6_A          134 PYECPHEGCDKRFSLPSRLKRHEKVHAG--------------------------YPCKKDDSCS---FVGKTWTLYLKHV  184 (190)
T ss_dssp             SSBCCSSSCCCBCSSHHHHHHHHTSSCS--------------------------CCCCSTTTCC---CCCSCHHHHHHHH
T ss_pred             CccCCCCCCCchhcCHHHHHHHHHHhCC--------------------------CcCCCCCcCC---CccccHHHHHHHH
Confidence            456766  77777777777777765433                          57777   87   8899999999999


Q ss_pred             Hh
Q 016443          236 EA  237 (389)
Q Consensus       236 ~d  237 (389)
                      +.
T Consensus       185 ~~  186 (190)
T 1tf6_A          185 AE  186 (190)
T ss_dssp             TT
T ss_pred             Hh
Confidence            64

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=96.44  E-value=0.0022  Score=54.08  Aligned_cols=48  Identities=27%  Similarity=0.550  Sum_probs=40.4

Q ss_pred             cccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 016443          163 CCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       163 ~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM~  236 (389)
                      .|-+  |+..+.+...+..||...+|-                       ..+.|-+  |+   +.|.+...|+.||+
T Consensus        92 ~C~~~~C~~~f~~~~~L~~H~~~h~~~-----------------------~~~~C~~~~C~---k~f~~~~~L~~H~~  143 (155)
T 2rpc_A           92 PCPFPGCGKIFARSENLKIHKRTHTGE-----------------------KPFKCEFEGCD---RRFANSSDRKKHMH  143 (155)
T ss_dssp             ECSCTTTCCEESCHHHHHHHHTTTCSS-----------------------CSBCCSSTTCC---CCBSSHHHHHHSST
T ss_pred             cCCcCCCCCccCCHHHHHHHHHhhCCC-----------------------CCccCCCCCCC---CccCCHHHHHHHHH
Confidence            4888  999999999999999865541                       1368998  98   89999999999996

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.37  E-value=0.0022  Score=53.92  Aligned_cols=53  Identities=19%  Similarity=0.506  Sum_probs=44.3

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHH
Q 016443          160 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHM  235 (389)
Q Consensus       160 ~~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM  235 (389)
                      .+-.|-+  |+..+.+...+..||...|.-.                      ..+.|-.  |+   +.|.+..+|+.||
T Consensus        96 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~----------------------~~~~C~~~~C~---~~f~~~~~L~~H~  150 (155)
T 2gli_A           96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE----------------------KPYVCKLPGCT---KRYTDPSSLRKHV  150 (155)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC----------------------CCEECCSTTTC---CEESSHHHHHHHH
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHHhcCCC----------------------CCeeCCCCCCc---cccCCHHHHHHHH
Confidence            3567998  9999999999999998778521                      1368988  98   8999999999999


Q ss_pred             Hh
Q 016443          236 EA  237 (389)
Q Consensus       236 ~d  237 (389)
                      +.
T Consensus       151 ~~  152 (155)
T 2gli_A          151 KT  152 (155)
T ss_dssp             HH
T ss_pred             Hh
Confidence            85

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.34  E-value=0.0052  Score=42.86  Aligned_cols=53  Identities=26%  Similarity=0.549  Sum_probs=44.0

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCC
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRH  240 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK~H  240 (389)
                      -.|-.|+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+...+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDV-----------------------RPYHCTYCN---FSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC-----------------------CCEECSSSS---CEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCC-----------------------CCccCCCCC---chhcCHHHHHHHHHHhcc
Confidence            46999999999999999999865441                       136899998   899999999999986544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.34  E-value=0.003  Score=44.70  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=24.1

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCCC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFIP  190 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~IP  190 (389)
                      .|-.|+..+.+......||...|.=.+.
T Consensus        32 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~   59 (60)
T 2adr_A           32 PCGLCNRAFTRRDLLIRHAQKIHSGNLG   59 (60)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTSCCSSC
T ss_pred             cCCCCCCccCCHHHHHHHHHHHcCCcCC
Confidence            5889999999999999999888875544

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.29  E-value=0.015  Score=50.73  Aligned_cols=74  Identities=19%  Similarity=0.320  Sum_probs=52.1

Q ss_pred             CCccc--cCCCCCCCHHHHHHHhhhhcCCCC-C------Cccc-ccCHHHHHHHHHHHhcC-Cceeee--cCCCCCCCCC
Q 016443          161 PACCF--MCDLPHDAIENCMVHMHKCHGFFI-P------DVEY-LKDPKGLLTYLGLKVKR-DFMCLY--CNDRCHPFNS  227 (389)
Q Consensus       161 ~~~CL--FC~~~s~s~e~nl~HM~~~H~F~I-P------~~ey-lvd~~gLl~YL~~kI~~-~~~Cl~--C~~~~k~F~s  227 (389)
                      +-.|-  .|+..+.+......||...|+-.. |      .=.. ......|...+..-... .+.|..  |+   +.|.+
T Consensus        72 ~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~---k~F~~  148 (190)
T 1tf6_A           72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD---KRFSL  148 (190)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCC---CBCSS
T ss_pred             ceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCC---chhcC
Confidence            45788  899999999999999988895221 1      1111 24666777665432211 268877  97   88999


Q ss_pred             HHHHHHHHHh
Q 016443          228 LEAVRKHMEA  237 (389)
Q Consensus       228 ~eav~~HM~d  237 (389)
                      ...|+.||+.
T Consensus       149 ~~~L~~H~~~  158 (190)
T 1tf6_A          149 PSRLKRHEKV  158 (190)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHHH
Confidence            9999999963

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.29  E-value=0.0042  Score=43.37  Aligned_cols=51  Identities=18%  Similarity=0.377  Sum_probs=43.0

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +-.|..|+..+.+......||...+|-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTGE-----------------------KPYKCEFCE---YAAAQKTSLRYHLER   54 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHCC-----------------------CCEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCCC-----------------------CCcCCCCCc---chhCCHHHHHHHHHH
Confidence            457999999999999999999975551                       236899998   899999999999974

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.22  E-value=0.0029  Score=46.44  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=22.1

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHG  186 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~  186 (389)
                      .|-+|+..+.....+..||...|+
T Consensus        39 ~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A           39 KCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             eCCCCCCccCCHHHHHHHHHHHhC
Confidence            599999999999999999998887

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.15  E-value=0.0034  Score=36.87  Aligned_cols=22  Identities=36%  Similarity=0.909  Sum_probs=20.4

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      |.|..|+|.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            6899999999999999999864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.91  E-value=0.015  Score=43.36  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=26.6

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCc
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDV  192 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~  192 (389)
                      -.|-.|+..+.....+..||...|.-..|..
T Consensus        39 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A           39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             cCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            3599999999999999999999998776655

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.88  E-value=0.0053  Score=45.86  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=26.6

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCC
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPD  191 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~  191 (389)
                      -.|-.|+..+.....+..||...|+..-|.
T Consensus        46 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A           46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             cCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            359999999999999999999999987664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.87  E-value=0.0043  Score=36.66  Aligned_cols=23  Identities=35%  Similarity=0.774  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            57899999999999999999864

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.77  E-value=0.0048  Score=36.60  Aligned_cols=23  Identities=30%  Similarity=0.804  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHh
Confidence            57899999999999999999874

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=95.71  E-value=0.0059  Score=36.20  Aligned_cols=23  Identities=22%  Similarity=0.728  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.67  E-value=0.0077  Score=44.47  Aligned_cols=52  Identities=19%  Similarity=0.413  Sum_probs=43.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-+|+..+.....+..||...++-                       .-+.|..|+   +.|.+...|+.||+.
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTGE-----------------------KPYKCLECG---KAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGCS-----------------------CCEECSSSC---CEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCCC-----------------------CCeECCCCC---cccCCHHHHHHHHHh
Confidence            4568999999999999999999865431                       136999998   899999999999974

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.66  E-value=0.017  Score=45.59  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             CccccccccCccC-CHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYR-SSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~-S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|. +...|+.|++.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~   47 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEV   47 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHH
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHH
Confidence            4689999999999 99999999954

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.63  E-value=0.015  Score=42.97  Aligned_cols=52  Identities=21%  Similarity=0.389  Sum_probs=43.6

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-.|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus        16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~-----------------------~~~~C~~C~---k~f~~~~~L~~H~~~   67 (74)
T 2lce_A           16 KPYKCDRCQASFRYKGNLASHKTVHTGE-----------------------KPYRCNICG---AQFNRPANLKTHTRI   67 (74)
T ss_dssp             CSBCCTTSSCCBSCHHHHHHHHHHHCCC-----------------------CSEECTTTC---CEESCHHHHHHHHHH
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHcCCC-----------------------CCEECCCCC---chhCCHHHHHHHHHh
Confidence            4567999999999999999999865431                       136899998   899999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.57  E-value=0.0058  Score=36.35  Aligned_cols=23  Identities=30%  Similarity=0.719  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.....++.|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            57899999999999999999864

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.57  E-value=0.0093  Score=43.99  Aligned_cols=24  Identities=38%  Similarity=0.713  Sum_probs=21.6

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ...|.|..|+|.|.+...|+.|++
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~   35 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQR   35 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCccCCHHHHHHHHH
Confidence            356899999999999999999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.55  E-value=0.033  Score=44.53  Aligned_cols=74  Identities=22%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCc-cc----ccCHHHHHHHHHHH----hcCCceeeecCCCCCCCCCHHH
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-EY----LKDPKGLLTYLGLK----VKRDFMCLYCNDRCHPFNSLEA  230 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~-ey----lvd~~gLl~YL~~k----I~~~~~Cl~C~~~~k~F~s~ea  230 (389)
                      .+-.|-.|+..+.+......||...++- -|.. ..    ......|...+...    ....+.|-.|+   +.|.+...
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~---~~f~~~~~   81 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTGE-KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ---ETFRRRME   81 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSSC-CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSC---CEESSHHH
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCCC-CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCC---CccCCHHH
Confidence            3567999999999999999999876652 2221 11    25667777777642    12346899998   89999999


Q ss_pred             HHHHHHh
Q 016443          231 VRKHMEA  237 (389)
Q Consensus       231 v~~HM~d  237 (389)
                      |+.||+.
T Consensus        82 l~~H~~~   88 (124)
T 2dlq_A           82 LRLHMVS   88 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999975

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.53  E-value=0.015  Score=47.62  Aligned_cols=27  Identities=19%  Similarity=0.488  Sum_probs=24.1

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcCCCC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHGFFI  189 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~F~I  189 (389)
                      .|-.|+..+........||...||-.|
T Consensus       102 ~C~~C~k~f~~~~~l~~H~~~h~~~~v  128 (129)
T 2wbt_A          102 VCPVCKKEFTSTDSALDHVCKKHNICV  128 (129)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTTCCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHHCCccC
Confidence            488999999999999999999998654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.51  E-value=0.0078  Score=37.51  Aligned_cols=24  Identities=38%  Similarity=0.656  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...++.|++.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHHH
Confidence            458999999999999999999864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.51  E-value=0.009  Score=43.73  Aligned_cols=52  Identities=23%  Similarity=0.425  Sum_probs=43.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-.|+..+.+...+..||...++-                       .-+.|-.|+   +.|.+...|+.||+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIHCTD-----------------------RPFKCNYCS---FDTKQPSNLSKHMKK   59 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCCS-----------------------CSEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCC-----------------------CCEeCCCCC---CccCCHHHHHHHHHH
Confidence            4568999999999999999999864331                       136899998   899999999999975

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=95.50  E-value=0.012  Score=41.46  Aligned_cols=50  Identities=18%  Similarity=0.389  Sum_probs=41.8

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      -.|-.|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   52 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNE-----------------------KPYPCGLCN---RAFTRRDLLIRHAQK   52 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSS-----------------------CSEECTTTC---CEESSHHHHHHHHTT
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCC-----------------------CCccCCCCC---CccCCHHHHHHHHHH
Confidence            46999999999999999999864331                       136899998   899999999999864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=94.47  E-value=0.0024  Score=37.50  Aligned_cols=23  Identities=39%  Similarity=0.827  Sum_probs=20.9

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            47899999999999999999874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=95.47  E-value=0.0076  Score=37.86  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHH
Confidence            47899999999999999999864

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.45  E-value=0.01  Score=44.20  Aligned_cols=55  Identities=16%  Similarity=0.377  Sum_probs=45.9

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .+-.|-.|+..+.+......||...|.-.                     ...+.|-.|+   +.|.+...|+.||+..
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~---------------------~~~~~C~~C~---~~f~~~~~L~~H~~~~   68 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQKHTEN---------------------VAKFHCPHCD---TVIARKSDLGVHLRKQ   68 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSSSS---------------------CSSEECSSSS---CEESSHHHHHHHHHHT
T ss_pred             CCeECCCcCchhCCHHHHHHHHHHhcCCC---------------------CCccCCCCCC---CccCCHHHHHHHHHHh
Confidence            45689999999999999999998777521                     0136999998   8999999999999864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=95.43  E-value=0.012  Score=37.33  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...+..|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCCCCcccCcHHHHHHHHHH
Confidence            3468999999999999999999864

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=95.43  E-value=0.01  Score=37.16  Aligned_cols=24  Identities=21%  Similarity=0.577  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...+..|++.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=95.37  E-value=0.011  Score=42.62  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=44.5

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-.|+..+.+......||...|.-.                     ...+.|-.|+   +.|.+...|+.||+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~---------------------~~~~~C~~C~---k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRN---------------------VKVYPCPFCF---KEFTRKDNMTAHVKI   62 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSS---------------------CCCEECTTTC---CEESCHHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCC---------------------CcCeECCCCC---CccCCHHHHHHHHHH
Confidence            34579999999999999999999877310                     1236899998   899999999999975

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=95.37  E-value=0.0063  Score=36.15  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTG
T ss_pred             CccCCCCCchhCCHHHHHHHHHH
Confidence            47899999999999999999975

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.36  E-value=0.0091  Score=35.43  Aligned_cols=23  Identities=26%  Similarity=0.855  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHHH
Confidence            57899999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.35  E-value=0.0076  Score=35.57  Aligned_cols=23  Identities=35%  Similarity=0.710  Sum_probs=20.9

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            47899999999999999999864

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.29  E-value=0.013  Score=36.82  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCeecCcCCCCcCchHHHHHHHHH
Confidence            3468999999999999999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.28  E-value=0.011  Score=37.37  Aligned_cols=25  Identities=16%  Similarity=0.583  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...+..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.26  E-value=0.011  Score=37.38  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...++.|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.26  E-value=0.01  Score=37.22  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...+..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.19  E-value=0.011  Score=46.64  Aligned_cols=52  Identities=21%  Similarity=0.425  Sum_probs=44.1

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-.|+..+.+...+..||...||-                       .-+.|-.|+   +.|.+...|+.||+.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~-----------------------k~~~C~~C~---k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLHAA-----------------------QVFPCKYCP---ATFYSSPGLTRHINK   78 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTSCS-----------------------SSEECTTSS---CEESSHHHHHHHHHT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhccCC-----------------------CccCCCCCC---CEeCCHHHHHHhCcc
Confidence            3457999999999999999999876652                       136899998   899999999999964

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=95.16  E-value=0.011  Score=46.55  Aligned_cols=32  Identities=19%  Similarity=0.380  Sum_probs=27.5

Q ss_pred             ccccccccCcc--CCHHHHHHHhhcHhHHHhhhc
Q 016443           45 TYSCGLCGKGY--RSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        45 ~~~C~~C~K~F--~S~nay~nHl~SKKHk~~~~~   76 (389)
                      .|.|.+|++.+  .|.+..++|++++||+.+++.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~   36 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD   36 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHH
Confidence            46799999999  567779999999999997653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.15  E-value=0.012  Score=37.13  Aligned_cols=25  Identities=24%  Similarity=0.592  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...+..|++.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=95.11  E-value=0.024  Score=44.45  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=44.2

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-+|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   67 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTDE-----------------------RPYTCDICH---KAFRRQDHLRDHRYI   67 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCCS-----------------------CCCBCSSSC---CBCSCHHHHHHHGGG
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCCC-----------------------CCcCCCCcc---chhCCHHHHHHHHHH
Confidence            4568999999999999999999876541                       236899998   899999999999975

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=95.09  E-value=0.012  Score=37.95  Aligned_cols=24  Identities=38%  Similarity=0.935  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...+..|++.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CceECCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.08  E-value=0.015  Score=38.14  Aligned_cols=25  Identities=32%  Similarity=0.786  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHh
Confidence            3468999999999999999999874

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.06  E-value=0.019  Score=42.78  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=43.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-.|+..+.+...+..||...++-                       .-+.|-.|+   +.|.+...|+.||+.
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~L~~H~~~   68 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRTHTGE-----------------------KPYKCDECG---KAFIQRSHLIGHHRV   68 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTTTCCS-----------------------CSEECSSSC---CEESSHHHHHHHGGG
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHcCCC-----------------------cCeeCCCCC---CccCCHHHHHHHHHH
Confidence            4578999999999999999999864431                       136899998   899999999999963

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.05  E-value=0.011  Score=37.39  Aligned_cols=24  Identities=25%  Similarity=0.786  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...+..|++.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHH
Confidence            458999999999999999999864

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.03  E-value=0.061  Score=41.18  Aligned_cols=60  Identities=12%  Similarity=0.019  Sum_probs=46.0

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      ...|-.|+..+.+...+..||...|.-.-|...|.              ...+.|-.|+   +.|.+...|+.||+.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~--------------c~~~~C~~C~---k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV--------------CYWEECPREG---KSFKAKYKLVNHIRV   84 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCC--------------CCCTTCSSTT---CCCSSHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccc--------------eeccCCCCCC---cccCCHHHHHHHHHh
Confidence            45699999999999999999997675433322221              1226899998   899999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.02  E-value=0.015  Score=37.84  Aligned_cols=24  Identities=29%  Similarity=0.632  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...++.|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKM   32 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999864

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=94.99  E-value=0.01  Score=35.24  Aligned_cols=23  Identities=30%  Similarity=0.610  Sum_probs=20.8

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            47899999999999999999864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.94  E-value=0.026  Score=43.28  Aligned_cols=52  Identities=19%  Similarity=0.430  Sum_probs=43.9

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|..|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   58 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTGV-----------------------KPYKCKTCD---YAAADSSSLNKHLRI   58 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCCC-----------------------CSEECSSSC---CEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCCC-----------------------CCEeCCCCC---CccCCHHHHHHHHHH
Confidence            4567999999999999999999865441                       136899998   899999999999985

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=93.93  E-value=0.0044  Score=37.07  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            47899999999999999999864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.89  E-value=0.023  Score=42.61  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=46.4

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .+-.|-.|+..+.+......||...|+-....                   ..+.|-.|+   +.|.+...|+.||+.-
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-------------------~~~~C~~C~---~~f~~~~~L~~H~~~h   70 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP-------------------AAFVCSKCG---KTFTRRNTMARHADNC   70 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTCSSCCC-------------------CCEECSSSC---CEESCHHHHHHHHHHC
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCC-------------------cceECCCCC---ChhCCHHHHHHHHHHc
Confidence            45689999999999999999999888642111                   136899998   8999999999999753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.88  E-value=0.018  Score=38.45  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           10 ENPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCEECCccCcccCCHHHHHHHHHH
Confidence            3468999999999999999999874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=93.86  E-value=0.0048  Score=36.93  Aligned_cols=23  Identities=26%  Similarity=0.743  Sum_probs=20.8

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            47899999999999999999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.85  E-value=0.02  Score=38.27  Aligned_cols=25  Identities=28%  Similarity=0.620  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.82  E-value=0.019  Score=37.80  Aligned_cols=25  Identities=36%  Similarity=0.691  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...++.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A           10 MKPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCCccCCHHHHHHHhhh
Confidence            3468999999999999999999864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.021  Score=38.05  Aligned_cols=25  Identities=28%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           10 EKPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CCSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=94.79  E-value=0.018  Score=37.55  Aligned_cols=25  Identities=28%  Similarity=0.687  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            8 ENPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCccCCCcChhhCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.77  E-value=0.019  Score=37.36  Aligned_cols=25  Identities=32%  Similarity=0.671  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.74  E-value=0.02  Score=38.38  Aligned_cols=25  Identities=40%  Similarity=0.817  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHh
Confidence            3468999999999999999999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.74  E-value=0.022  Score=38.04  Aligned_cols=25  Identities=32%  Similarity=0.719  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A           10 GKPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             SCSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=94.73  E-value=0.011  Score=34.83  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.73  E-value=0.019  Score=38.40  Aligned_cols=25  Identities=24%  Similarity=0.507  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en9_A           10 KKLFKCNECKKTFTQSSSLTVHQRI   34 (46)
T ss_dssp             SCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCEECCccCcccCCHHHHHHHHHH
Confidence            3468999999999999999999874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.70  E-value=0.019  Score=38.31  Aligned_cols=25  Identities=28%  Similarity=0.628  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHhH
Confidence            3468999999999999999999875

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.70  E-value=0.022  Score=37.92  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.69  E-value=0.022  Score=38.02  Aligned_cols=25  Identities=32%  Similarity=0.651  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCChhHHHHHhHh
Confidence            3468999999999999999999864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.69  E-value=0.016  Score=43.18  Aligned_cols=56  Identities=18%  Similarity=0.329  Sum_probs=45.2

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .+-.|-.|+..+.....+..||...++-                    .-...+.|-.|+   +.|.+...|+.||+..
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~--------------------~~~~~~~C~~C~---k~f~~~~~L~~H~~~~   61 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRKHAET--------------------VAALRFPCEFCG---KRFEKPDSVAAHRSKS   61 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHHH--------------------TTTCCEECTTTC---CEESSHHHHHHHHHHT
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHHhhcc--------------------CCCcccCCCCCC---chhCCHHHHHHHHHHh
Confidence            4567999999999999999999876651                    001236899998   8999999999999654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.02  Score=37.99  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CcCeECCCCCcccCchHHHHHHHhH
Confidence            3468999999999999999999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.63  E-value=0.019  Score=38.38  Aligned_cols=25  Identities=28%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCcCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999874

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.62  E-value=0.019  Score=37.78  Aligned_cols=25  Identities=24%  Similarity=0.591  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH
Confidence            3468999999999999999999864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=94.61  E-value=0.018  Score=37.47  Aligned_cols=24  Identities=42%  Similarity=0.834  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...++.|++.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~   33 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRS   33 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhhh
Confidence            468999999999999999999864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.59  E-value=0.02  Score=38.18  Aligned_cols=25  Identities=28%  Similarity=0.626  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.58  E-value=0.019  Score=37.94  Aligned_cols=25  Identities=24%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|+++
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (44)
T 2emx_A            8 EKPFGCSCCEKAFSSKSYLLVHQQT   32 (44)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.57  E-value=0.035  Score=43.67  Aligned_cols=53  Identities=23%  Similarity=0.475  Sum_probs=43.6

Q ss_pred             CCCccccCCCCCC-CHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHD-AIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~-s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-.|+..+. ....+..||...|+-                   ++   -+.|-.|+   +.|.+...|+.||+.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~~-------------------~~---~~~C~~C~---k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKL-------------------QD---ALKCQHCR---KQFKSKAGLNYHTMA   76 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHHHH-------------------HH---HHSCSSSC---CCCSCHHHHHHHHHH
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHHcCC-------------------CC---CEECCCCC---CccCCHHHHHHHHHH
Confidence            4567999999999 999999999865530                   23   25899998   899999999999975

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.56  E-value=0.024  Score=37.74  Aligned_cols=24  Identities=29%  Similarity=0.614  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKC   34 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHHh
Confidence            468999999999999999999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.55  E-value=0.019  Score=37.43  Aligned_cols=25  Identities=28%  Similarity=0.701  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...+..|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCCeeCCCccchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.55  E-value=0.025  Score=37.71  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH
Confidence            3468999999999999999999874

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.54  E-value=0.028  Score=37.50  Aligned_cols=25  Identities=32%  Similarity=0.650  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhhh
Confidence            3468999999999999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=94.54  E-value=0.02  Score=38.33  Aligned_cols=25  Identities=32%  Similarity=0.652  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQRI   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=94.54  E-value=0.023  Score=37.84  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQRS   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCceECCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.53  E-value=0.02  Score=38.25  Aligned_cols=25  Identities=32%  Similarity=0.717  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQKT   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.53  E-value=0.021  Score=38.00  Aligned_cols=25  Identities=36%  Similarity=0.763  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.52  E-value=0.02  Score=38.14  Aligned_cols=25  Identities=28%  Similarity=0.639  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.52  E-value=0.029  Score=37.53  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQRV   34 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CCCeeCcccCchhCCHHHHHHHHHh
Confidence            3468999999999999999999874

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.52  E-value=0.024  Score=37.49  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.52  E-value=0.023  Score=37.86  Aligned_cols=25  Identities=28%  Similarity=0.598  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCEECCCCChhhCChHHHHHHHHh
Confidence            3468999999999999999999864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.50  E-value=0.027  Score=37.68  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.50  E-value=0.029  Score=37.51  Aligned_cols=25  Identities=24%  Similarity=0.588  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A           10 EKPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             SSSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             CcCCCCCCCCcccCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.49  E-value=0.019  Score=37.49  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVLI   33 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTHH
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHHH
Confidence            3468999999999999999999863

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.48  E-value=0.023  Score=37.97  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKI   34 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999874

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.48  E-value=0.022  Score=38.15  Aligned_cols=25  Identities=28%  Similarity=0.592  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|.+|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCcCCCccCCHHHHHHHHHH
Confidence            3468999999999999999999865

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=94.48  E-value=0.028  Score=37.44  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.48  E-value=0.021  Score=38.06  Aligned_cols=25  Identities=36%  Similarity=0.786  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eow_A           10 EKPYKCNECGKAFRARSSLAIHQAT   34 (46)
T ss_dssp             CCCEECTTSCCEESSHHHHHHHHHH
T ss_pred             CCCeeccccCChhcCHHHHHHHHHH
Confidence            3468999999999999999999864

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.47  E-value=0.025  Score=37.88  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRI   34 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHH
Confidence            3468999999999999999999864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=94.43  E-value=0.026  Score=37.70  Aligned_cols=25  Identities=32%  Similarity=0.681  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQRV   34 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHHH
T ss_pred             CCceECCCCCchhCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.43  E-value=0.025  Score=37.73  Aligned_cols=24  Identities=25%  Similarity=0.674  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|+.|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.43  E-value=0.024  Score=37.78  Aligned_cols=25  Identities=28%  Similarity=0.737  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHHH
Confidence            3468999999999999999999874

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.43  E-value=0.021  Score=38.14  Aligned_cols=25  Identities=28%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQRT   34 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHHH
Confidence            3468999999999999999999875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.41  E-value=0.025  Score=37.90  Aligned_cols=25  Identities=28%  Similarity=0.590  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999865

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=94.40  E-value=0.017  Score=34.50  Aligned_cols=21  Identities=33%  Similarity=0.952  Sum_probs=19.3

Q ss_pred             ccccccccCccCCHHHHHHHh
Q 016443           45 TYSCGLCGKGYRSSKALAQHL   65 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl   65 (389)
                      .|.|..|+|.|.+...+..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            478999999999999999994

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=94.39  E-value=0.024  Score=37.83  Aligned_cols=25  Identities=32%  Similarity=0.662  Sum_probs=22.4

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNSQLSQHQKI   34 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHTG
T ss_pred             CcCcCCCCCcchhCCHHHHHHHHHh
Confidence            3468999999999999999999875

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.38  E-value=0.027  Score=37.58  Aligned_cols=25  Identities=32%  Similarity=0.662  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHHMV   34 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHGGG
T ss_pred             CcCccCCCccchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.38  E-value=0.024  Score=37.75  Aligned_cols=25  Identities=20%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytf_A           10 EKPFECSECQKAFNTKSNLIVHQRT   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.38  E-value=0.027  Score=37.43  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh
Confidence            3468999999999999999999865

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.37  E-value=0.022  Score=38.07  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEECcccCCccCCHhHHHHHHHH
Confidence            3468999999999999999999865

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.36  E-value=0.028  Score=37.51  Aligned_cols=25  Identities=32%  Similarity=0.700  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A           10 EKPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             SCCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCCeECCcCChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.36  E-value=0.028  Score=37.59  Aligned_cols=25  Identities=36%  Similarity=0.708  Sum_probs=22.4

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWIT   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTH
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.35  E-value=0.02  Score=36.66  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             CccccccccCccCCHHHHHHH-hh
Q 016443           44 MTYSCGLCGKGYRSSKALAQH-LN   66 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nH-l~   66 (389)
                      ..|.|..|+|.|.+...++.| ++
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~~   31 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVIQ   31 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999 54

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.35  E-value=0.024  Score=37.80  Aligned_cols=25  Identities=32%  Similarity=0.682  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQRI   34 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCChHHHHHHHhh
Confidence            3468999999999999999999875

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.35  E-value=0.026  Score=37.33  Aligned_cols=24  Identities=38%  Similarity=0.588  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.34  E-value=0.022  Score=37.58  Aligned_cols=24  Identities=29%  Similarity=0.649  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHH
Confidence            468999999999999999999864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.34  E-value=0.025  Score=37.75  Aligned_cols=25  Identities=28%  Similarity=0.701  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.33  E-value=0.032  Score=37.29  Aligned_cols=25  Identities=32%  Similarity=0.724  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCcCCCccChhhCChHHHHHHHHH
Confidence            3468999999999999999999875

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.33  E-value=0.028  Score=37.35  Aligned_cols=25  Identities=28%  Similarity=0.616  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHERL   34 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHHH
T ss_pred             CCCeECCCCCCccCchHHHHHHHHh
Confidence            3468999999999999999999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.32  E-value=0.028  Score=37.59  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRV   34 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH
Confidence            468999999999999999999864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.31  E-value=0.024  Score=37.85  Aligned_cols=25  Identities=28%  Similarity=0.680  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQKI   34 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHh
Confidence            3468999999999999999999863

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.30  E-value=0.027  Score=37.43  Aligned_cols=25  Identities=32%  Similarity=0.676  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.29  E-value=0.018  Score=36.47  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             CccccccccCccCCH-HHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSS-KALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~-nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+. ..+..|++.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHHh
Confidence            468999999999999 999999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.28  E-value=0.023  Score=37.84  Aligned_cols=25  Identities=28%  Similarity=0.668  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.27  E-value=0.013  Score=43.10  Aligned_cols=32  Identities=28%  Similarity=0.625  Sum_probs=29.2

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHHhhhcC
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      -.|.+|+++|+..-+.+.|+-|+.|..++...
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHH
Confidence            36999999999999999999999999987754

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.27  E-value=0.025  Score=37.62  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.26  E-value=0.025  Score=37.76  Aligned_cols=25  Identities=28%  Similarity=0.614  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.25  E-value=0.032  Score=37.15  Aligned_cols=24  Identities=29%  Similarity=0.659  Sum_probs=21.8

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ...|.|..|+|.|.+...|+.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           10 KKPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CCSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCCEECCccCchhCChHHHHHHhH
Confidence            346899999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.24  E-value=0.026  Score=37.63  Aligned_cols=25  Identities=36%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQLI   34 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999865

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.24  E-value=0.031  Score=36.97  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|..|++.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~   32 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQ   32 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHHh
Confidence            468999999999999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.23  E-value=0.025  Score=37.81  Aligned_cols=25  Identities=32%  Similarity=0.666  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em4_A           10 QRPYECIECGKAFKTKSSLICHRRS   34 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=94.23  E-value=0.029  Score=41.55  Aligned_cols=50  Identities=20%  Similarity=0.418  Sum_probs=42.1

Q ss_pred             CccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          162 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       162 ~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      -.|-.|+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   51 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDT-----------------------RPYPCQYCG---KRFHQKSDMKKHTFI   51 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTC-----------------------CCEECSSSC---CEESSHHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCC-----------------------CCeeCCcCC---hhhCCHHHHHHHHHH
Confidence            35999999999999999999875441                       236899998   899999999999974

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.23  E-value=0.026  Score=37.60  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHHH
T ss_pred             CcCeECCCCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.23  E-value=0.026  Score=37.58  Aligned_cols=25  Identities=32%  Similarity=0.647  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQRI   34 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHGG
T ss_pred             CCCeECCCcChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.23  E-value=0.031  Score=37.35  Aligned_cols=25  Identities=36%  Similarity=0.756  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A           10 ERPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=94.22  E-value=0.028  Score=34.05  Aligned_cols=23  Identities=30%  Similarity=0.767  Sum_probs=20.7

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 016443           45 TYSCG--LCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~--~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.  .|+|.|.+...++.|++.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            47898  999999999999999875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.22  E-value=0.026  Score=37.74  Aligned_cols=25  Identities=32%  Similarity=0.739  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEEccccCcccCCHHHHHHHHHH
Confidence            3468999999999999999999865

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=94.22  E-value=0.022  Score=37.92  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=21.0

Q ss_pred             CCccccccccCccCCHHHHHHHh
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHL   65 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl   65 (389)
                      ...|.|..|+|+|.+...++.|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            34689999999999999999998

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=94.22  E-value=0.029  Score=37.47  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQRM   34 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.20  E-value=0.021  Score=38.20  Aligned_cols=25  Identities=44%  Similarity=0.818  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCeECcccChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.19  E-value=0.022  Score=37.89  Aligned_cols=25  Identities=28%  Similarity=0.675  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTT
T ss_pred             CcCccCCCCCCccCChHHHHHHHHH
Confidence            3468999999999999999999864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.19  E-value=0.026  Score=37.73  Aligned_cols=25  Identities=28%  Similarity=0.667  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.12  E-value=0.027  Score=37.64  Aligned_cols=25  Identities=36%  Similarity=0.692  Sum_probs=22.4

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCeECcccCchhCCHHHHHHHHHH
Confidence            3468999999999999999999974

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.12  E-value=0.027  Score=37.57  Aligned_cols=25  Identities=28%  Similarity=0.635  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWRI   34 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=94.11  E-value=0.027  Score=38.57  Aligned_cols=23  Identities=35%  Similarity=0.905  Sum_probs=21.3

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ..|.|..|+|.|.....|+.|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            46899999999999999999987

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.10  E-value=0.021  Score=38.20  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|+.|++.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHH
Confidence            468999999999999999999864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.08  E-value=0.025  Score=43.35  Aligned_cols=52  Identities=15%  Similarity=0.351  Sum_probs=43.6

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-.|+..+.+......||...++-                       .-+.|..|+   +.|.+...|+.||+.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   57 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSHSGE-----------------------KPYSCPVCG---LRFKRKDRMSYHVRS   57 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHSCSS-----------------------CSEECSSSC---CEESCHHHHHHHHHH
T ss_pred             CCeECCCCCCccCChHHHHHHHHhcCCC-----------------------CCCcCCCCC---CccCCHHHHHHHHHH
Confidence            4567999999999999999999865431                       136899998   899999999999975

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=94.08  E-value=0.033  Score=37.04  Aligned_cols=25  Identities=32%  Similarity=0.699  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQRV   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCeECCccccccCChHHHHHHHHH
Confidence            3468999999999999999999865

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.06  E-value=0.03  Score=37.31  Aligned_cols=25  Identities=28%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeeCcccCcccCChHHHHHHHHH
Confidence            3468999999999999999999874

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=94.06  E-value=0.023  Score=38.05  Aligned_cols=25  Identities=32%  Similarity=0.650  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHHH
T ss_pred             CCCcccCccCcccCCHHHHHHHHHH
Confidence            3468999999999999999999874

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.04  E-value=0.028  Score=37.51  Aligned_cols=25  Identities=24%  Similarity=0.595  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQRV   34 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.99  E-value=0.024  Score=37.84  Aligned_cols=25  Identities=28%  Similarity=0.684  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQRT   34 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCchHHHHHHHHH
Confidence            3468999999999999999999874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.99  E-value=0.031  Score=37.29  Aligned_cols=25  Identities=28%  Similarity=0.643  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQRS   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHHH
Confidence            3468999999999999999999864

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.97  E-value=0.032  Score=37.08  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQRV   34 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCcCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.95  E-value=0.023  Score=37.84  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQRT   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.94  E-value=0.031  Score=37.31  Aligned_cols=25  Identities=36%  Similarity=0.745  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em2_A           10 EKPFKCKECGKAFRQNIHLASHLRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEECCcCCchhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.94  E-value=0.028  Score=37.50  Aligned_cols=25  Identities=40%  Similarity=0.751  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQKV   34 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHh
Confidence            3468999999999999999999875

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.86  E-value=0.033  Score=37.10  Aligned_cols=25  Identities=28%  Similarity=0.658  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CcCeECCCCCCeeCChHHHHHHHHH
Confidence            3468999999999999999999864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.84  E-value=0.025  Score=37.34  Aligned_cols=25  Identities=20%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...+..|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQRNYLVQHERT   34 (44)
T ss_dssp             CCSEECSSSSCEESSSHHHHHHHHH
T ss_pred             CCCeECCCCCchhCCHHHHHHHhHh
Confidence            3468999999999999999999864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.81  E-value=0.025  Score=37.72  Aligned_cols=25  Identities=32%  Similarity=0.614  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCeeCcccChhhCCHHHHHHHHHH
Confidence            3468999999999999999999854

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.74  E-value=0.036  Score=36.95  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yso_A           10 EKSHQCRECGEIFFQYVSLIEHQVL   34 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEEccccChhhCCHHHHHHHHHH
Confidence            3468999999999999999999864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=93.74  E-value=0.031  Score=34.04  Aligned_cols=23  Identities=35%  Similarity=0.700  Sum_probs=21.1

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 016443           45 TYSCG--LCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~--~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.  .|+|.|.+...+..|+++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHH
Confidence            57899  899999999999999975

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=93.66  E-value=0.026  Score=39.12  Aligned_cols=26  Identities=23%  Similarity=0.706  Sum_probs=22.6

Q ss_pred             CccccccccCccCCHHHHHHHhhcHh
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNSRS   69 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~SKK   69 (389)
                      ..|.|..|+|.|.+...|..|+++..
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHhc
Confidence            45889999999999999999997653

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.65  E-value=0.072  Score=39.30  Aligned_cols=24  Identities=21%  Similarity=0.591  Sum_probs=20.8

Q ss_pred             CCcccccc--ccCccCCHHHHHHHhh
Q 016443           43 PMTYSCGL--CGKGYRSSKALAQHLN   66 (389)
Q Consensus        43 ~~~~~C~~--C~K~F~S~nay~nHl~   66 (389)
                      ...|.|..  |+|.|.+...|+.|++
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~   30 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKK   30 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHH
Confidence            34578887  9999999999999986

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.65  E-value=0.034  Score=36.94  Aligned_cols=25  Identities=28%  Similarity=0.733  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.....|..|++.
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~   32 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVRS   32 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999865

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=93.64  E-value=0.033  Score=41.00  Aligned_cols=24  Identities=33%  Similarity=0.851  Sum_probs=21.6

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .+|.|..|+|+|.+...|..|++.
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~~   26 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRRA   26 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHHH
Confidence            368999999999999999999864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=93.60  E-value=0.032  Score=32.80  Aligned_cols=23  Identities=26%  Similarity=0.742  Sum_probs=20.8

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 016443           45 TYSCG--LCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~--~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.  .|+|.|.+...+..|++.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            47899  999999999999999864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.56  E-value=0.028  Score=37.45  Aligned_cols=25  Identities=32%  Similarity=0.660  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRRV   34 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTHH
T ss_pred             CCCeECCcCCchhCCHHHHHHHHHh
Confidence            3468999999999999999999864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.55  E-value=0.038  Score=37.44  Aligned_cols=26  Identities=35%  Similarity=0.580  Sum_probs=22.8

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 016443           42 TPMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        42 ~~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ....|.|..|+|.|.+...|+.|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLS   34 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHh
Confidence            34568999999999999999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.53  E-value=0.042  Score=41.91  Aligned_cols=52  Identities=19%  Similarity=0.478  Sum_probs=43.6

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      +-.|-.|+..+.+......||...+|-                       .-+.|-.|+   +.|.+...|+.||+..
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~C~---k~f~~~~~L~~H~~~h   54 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGE-----------------------KPFACDICG---RKFARSDERKRHRDIQ   54 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESSHHHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCC-----------------------CCccCCCCC---CccCCHHHHHHHHHHh
Confidence            457999999999999999999875441                       136899998   8999999999999763

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.45  E-value=0.024  Score=37.84  Aligned_cols=25  Identities=36%  Similarity=0.760  Sum_probs=22.2

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|+.|++.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQRVHLTQHQRV   34 (46)
T ss_dssp             CCSEECTTTCCEESSSHHHHTTGGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.38  E-value=0.019  Score=38.01  Aligned_cols=25  Identities=28%  Similarity=0.646  Sum_probs=22.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCCeECcccCcccCCHHHHHHHHHH
Confidence            3468999999999999999999864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=93.36  E-value=0.041  Score=38.30  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|..|++.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHHH
Confidence            458999999999999999999864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=93.30  E-value=0.05  Score=34.69  Aligned_cols=24  Identities=33%  Similarity=0.603  Sum_probs=21.3

Q ss_pred             Ccccccc--ccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|.+  |+|.|.+...++.|++.
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            4689996  99999999999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=93.22  E-value=0.045  Score=39.16  Aligned_cols=24  Identities=21%  Similarity=0.589  Sum_probs=20.7

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...|+.|+++
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH
Confidence            468899999999999999999865

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=93.19  E-value=0.17  Score=39.95  Aligned_cols=75  Identities=19%  Similarity=0.305  Sum_probs=53.6

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCC---CC--Ccc-cccCHHHHHHHHHHHhcC-CceeeecCCCCCCCCCHHH
Q 016443          160 DPACCFM--CDLPHDAIENCMVHMHKCHGFF---IP--DVE-YLKDPKGLLTYLGLKVKR-DFMCLYCNDRCHPFNSLEA  230 (389)
Q Consensus       160 ~~~~CLF--C~~~s~s~e~nl~HM~~~H~F~---IP--~~e-ylvd~~gLl~YL~~kI~~-~~~Cl~C~~~~k~F~s~ea  230 (389)
                      .+-.|-+  |+..+.+......||...++--   =+  .=. .......|...+...... .+.|-.|+   +.|.+...
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f~~~~~   81 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ---RKFSRSDH   81 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTC---CEESCHHH
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccC---chhCCHHH
Confidence            3567998  9999999999999999765421   11  011 124567777776654322 36899998   89999999


Q ss_pred             HHHHHHh
Q 016443          231 VRKHMEA  237 (389)
Q Consensus       231 v~~HM~d  237 (389)
                      |+.||+.
T Consensus        82 l~~H~~~   88 (119)
T 2jp9_A           82 LKTHTRT   88 (119)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999974

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.11  E-value=0.028  Score=56.90  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=29.4

Q ss_pred             CccccccccC------ccCCHHHHHHHhhcHhHHHhhhc
Q 016443           44 MTYSCGLCGK------GYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        44 ~~~~C~~C~K------~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      ..+.|.+|++      ++..+..|+.|++|++||.+++.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~  397 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKR  397 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHH
Confidence            4478999998      89999999999999999997654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.09  E-value=0.09  Score=41.69  Aligned_cols=57  Identities=25%  Similarity=0.458  Sum_probs=45.4

Q ss_pred             CCCccccCCCCC-CCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHH-HHh
Q 016443          160 DPACCFMCDLPH-DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKH-MEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s-~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~H-M~d  237 (389)
                      .+-.|-.|+..+ .+...+..||.. ||    +                   .-+.|-.|+   |.|.+...|+.| |+.
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~-h~----~-------------------k~~~C~~Cg---k~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMEN-CK----Q-------------------EMFTCHHCG---KQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHH-HC----C-------------------CCCCCSSSC---CCCSSHHHHHHHHHHH
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHH-HC----C-------------------CCeECCCCC---CeeCCHHHHHHHhHHh
Confidence            356799999999 999999999985 44    1                   135899998   899999999999 753


Q ss_pred             CCCccccC
Q 016443          238 KRHCKIHF  245 (389)
Q Consensus       238 K~Hcki~~  245 (389)
                        |...+|
T Consensus        86 --H~~~p~   91 (96)
T 2ctd_A           86 --HNSLPS   91 (96)
T ss_dssp             --TCCCSS
T ss_pred             --cCCCCC
Confidence              555555

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=93.07  E-value=0.046  Score=40.23  Aligned_cols=51  Identities=20%  Similarity=0.356  Sum_probs=42.4

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      |-.|-.|+..+.....+..||. .|.=                   ++   -+.|-.|+   +.|.....|+.||+-
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~-~Ht~-------------------ek---p~~C~~C~---k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRR-AHLG-------------------YR---PRSCPECG---KCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH-HHHT-------------------CC---CEECTTTC---CEESSHHHHHHHGGG
T ss_pred             CccCCCCCCEeCCHHHHHHHHH-HhCC-------------------Cc---CeECCCCC---CCcCCHHHHHHHhCc
Confidence            5679999999999999999997 4631                   12   36899998   899999999999963

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=92.98  E-value=0.057  Score=39.44  Aligned_cols=52  Identities=21%  Similarity=0.508  Sum_probs=42.8

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.|-+  |+..+.+......||...+|-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ-----------------------KPFQCRICM---RNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESCHHHHHHHHTT
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHhhCCC-----------------------CCeECCCCC---chhCCHHHHHHHHHh
Confidence            4567985  999999999999999865441                       236899998   899999999999963

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=92.88  E-value=0.0069  Score=37.70  Aligned_cols=23  Identities=30%  Similarity=0.777  Sum_probs=20.5

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|++.
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            47899999999999999999864

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=92.85  E-value=0.093  Score=53.02  Aligned_cols=32  Identities=22%  Similarity=0.504  Sum_probs=28.6

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      .+.|..|+|.|++++.|.+||.+|||+.++.+
T Consensus       292 ~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          292 GIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             EECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             CeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            35699999999999999999999999997644

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.70  E-value=0.045  Score=43.24  Aligned_cols=51  Identities=22%  Similarity=0.360  Sum_probs=42.7

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      .+-.| .|+..+.+......||...++-                       ..+.|-.|+   +.|.+...|+.||+.
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   59 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSMHLGL-----------------------RPYGCGVCG---KKFKMKHHLVGHMKI   59 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCC-----------------------CSEECTTTS---CEESSSHHHHHHHTT
T ss_pred             CCEec-cCCCccCCHHHHHHHHHHcCCC-----------------------cCccCCCCC---cccCCHHHHHHHHHH
Confidence            45679 8999999999999999975541                       236899998   899999999999974

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.62  E-value=0.073  Score=35.60  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CCcccccc--ccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..  |+|.|.+...|+.|++.
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            45689986  99999999999999864

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=92.54  E-value=0.079  Score=38.95  Aligned_cols=25  Identities=28%  Similarity=0.599  Sum_probs=22.3

Q ss_pred             CCCccccccccCccCCHHHHHHHhh
Q 016443           42 TPMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        42 ~~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ....|.|..|+|.|.+...|+.|++
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~   38 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKT   38 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHH
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHH
Confidence            4457899999999999999999985

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=92.34  E-value=0.08  Score=39.90  Aligned_cols=51  Identities=22%  Similarity=0.500  Sum_probs=42.2

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          161 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       161 ~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +-.|-+  |+..+.+......||...++-                       ..+.|..|+   +.|.+...|+.||+.
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~   56 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQ-----------------------KPFQCRICM---RNFSRSDHLTTHIRT   56 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCC-----------------------CCEECTTTC---CEESCHHHHHHHHHH
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCC-----------------------CCccCCCCC---cccCCHHHHHHHHHH
Confidence            456874  999999999999999865541                       236899998   899999999999984

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=92.32  E-value=0.071  Score=38.90  Aligned_cols=23  Identities=22%  Similarity=0.748  Sum_probs=18.9

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.+...+..|+++
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           49 PFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CEECTTTCCEESCHHHHHHHHTT
T ss_pred             CeECCCCCchhCCHHHHHHHHHh
Confidence            57888888888888888888764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.32  E-value=0.085  Score=39.77  Aligned_cols=25  Identities=36%  Similarity=0.701  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.....|+.|++.
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhh
Confidence            3568999999999999999999865

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.97  E-value=0.13  Score=37.80  Aligned_cols=52  Identities=21%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 016443          161 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       161 ~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM~  236 (389)
                      +-.|-+  |+..+.+...+..||...|.-                      ..-+.|-.  |+   +.|.+...|+.||+
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~----------------------~~~~~C~~~~C~---k~f~~~~~L~~H~~   61 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH----------------------QKSFSCPEPACG---KSFNFKKHLKEHMK   61 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGS----------------------CCCEECSCTTTC---CEESSHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCC----------------------CCCeECCCCCCc---CccCCHHHHHHHHH
Confidence            456888  999999999999999976742                      11368988  98   89999999999997


Q ss_pred             h
Q 016443          237 A  237 (389)
Q Consensus       237 d  237 (389)
                      .
T Consensus        62 ~   62 (79)
T 2dlk_A           62 L   62 (79)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.90  E-value=0.14  Score=40.29  Aligned_cols=49  Identities=20%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~  236 (389)
                      .+-.|..|+..+.+...+..||.. |.                     +   -+.|-.|+   +.|.+...|+.||+
T Consensus        15 ~~~~C~~C~~~f~~~~~l~~H~~~-H~---------------------~---~~~C~~C~---~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLLEQGSHERL-CR---------------------N---AAVCPYCS---LRFFSPELKQEHES   63 (107)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HH---------------------H---SBCCTTTC---CCBSSHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHH-CC---------------------C---CccCCCCC---CccCCHHHHHHHHH
Confidence            456799999999999999999986 41                     1   25899998   89999999999995

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=91.56  E-value=0.095  Score=41.19  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=22.3

Q ss_pred             ccccCCCCCCCHHHHHHHhhhhcC
Q 016443          163 CCFMCDLPHDAIENCMVHMHKCHG  186 (389)
Q Consensus       163 ~CLFC~~~s~s~e~nl~HM~~~H~  186 (389)
                      .|-+|+..+.....+..||.+.|.
T Consensus        58 ~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           58 PCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             ECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCCEeCCHHHHHHhCcccCc
Confidence            599999999999999999999985

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.35  E-value=0.11  Score=36.11  Aligned_cols=24  Identities=33%  Similarity=0.785  Sum_probs=21.6

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ...|.|..|+|.|.+...|+.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            356899999999999999999985

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.21  E-value=0.12  Score=32.60  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             Cccccc--cccCccCCHHHHHHHhhc
Q 016443           44 MTYSCG--LCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~--~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|.  .|+|.|.+...++.|++.
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~   30 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHH
Confidence            458999  599999999999999854

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=90.47  E-value=0.16  Score=34.29  Aligned_cols=24  Identities=21%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ...+.|..|+-+|++-++|.+|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            345679999999999999999964

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=90.42  E-value=0.2  Score=40.67  Aligned_cols=51  Identities=20%  Similarity=0.425  Sum_probs=42.2

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .+-.|-.|+..+........||.. |     +.                   -+.|-.|+   +.|.+...|+.||+..
T Consensus        73 ~~~~C~~C~k~f~~~~~l~~H~~~-H-----~~-------------------~~~C~~C~---k~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           73 SQFVCPLCLMPFSSSVSLKQHIRY-T-----EH-------------------TKVCPVCK---KEFTSTDSALDHVCKK  123 (129)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH-T-----CC-------------------CCBCTTTC---CBCSSHHHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHhHHHHHHHH-C-----CC-------------------CCCCCCCC---cccCCHHHHHHHHHHH
Confidence            345799999999999999999974 6     11                   15899998   8999999999999753

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.29  E-value=0.18  Score=37.23  Aligned_cols=25  Identities=32%  Similarity=0.727  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.+...|..|++.
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~   40 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRT   40 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH
Confidence            3568999999999999999999863

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=90.23  E-value=0.23  Score=36.10  Aligned_cols=51  Identities=18%  Similarity=0.402  Sum_probs=41.9

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHH
Q 016443          160 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHM  235 (389)
Q Consensus       160 ~~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM  235 (389)
                      .+-.|-.  |+..+........||...++-                       .-+.|.+  |+   +.|.+...|+.||
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~-----------------------~~~~C~~~~C~---k~f~~~~~l~~H~   69 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGE-----------------------KPFSCSWKGCE---RRFARSDELSRHR   69 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHHHSSS-----------------------CSEECCCTTCC---CEESSHHHHHHHT
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHhcCCC-----------------------CCccCCCCCCC---cccCCHHHHHhHh
Confidence            5667988  999999999999999754431                       1368977  98   8999999999998


Q ss_pred             H
Q 016443          236 E  236 (389)
Q Consensus       236 ~  236 (389)
                      +
T Consensus        70 ~   70 (72)
T 2epa_A           70 R   70 (72)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.02  E-value=0.19  Score=33.39  Aligned_cols=25  Identities=28%  Similarity=0.591  Sum_probs=21.9

Q ss_pred             CCccccc--cccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCG--LCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~--~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|.  .|+|.|.+...|+.|++.
T Consensus        10 ~k~~~C~~~~C~k~f~~~~~L~~H~~~   36 (48)
T 2ent_A           10 EKPFACTWPGCGWRFSRSDELSRHRRS   36 (48)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            3468998  899999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.02  E-value=0.19  Score=42.34  Aligned_cols=51  Identities=22%  Similarity=0.471  Sum_probs=42.4

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +-.|-.|+..+.+...+..||. .|.-   +                   ..+.|-.|+   +.|.+...|+.||+.
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~-~H~~---~-------------------k~~~C~~C~---k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFN-IHSW---E-------------------KKYPCRYCE---KVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHH-HHHC---C-------------------SCEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CeECCCCCCCcCCHHHHHHHHH-HcCC---C-------------------CCeeCCccC---eecccccchhhhccc
Confidence            4579999999999999999997 4631   1                   136899998   899999999999974

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=89.92  E-value=0.4  Score=36.63  Aligned_cols=52  Identities=15%  Similarity=0.413  Sum_probs=42.6

Q ss_pred             CCCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHH
Q 016443          160 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHM  235 (389)
Q Consensus       160 ~~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM  235 (389)
                      .+-.|-+  |+..+.+......||...++-                       ..+.|.+  |+   +.|.+...|+.||
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~l~~H~   67 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGE-----------------------KPYKCTWEGCD---WRFARSDELTRHY   67 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCC-----------------------CCEECCSSSCC---CEESSHHHHHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCC-----------------------CCeeCCCCCCC---CccCCHHHHHHHH
Confidence            4567998  999999999999999865441                       1368875  97   8999999999999


Q ss_pred             Hh
Q 016443          236 EA  237 (389)
Q Consensus       236 ~d  237 (389)
                      +.
T Consensus        68 ~~   69 (100)
T 2ebt_A           68 RK   69 (100)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.87  E-value=0.15  Score=37.90  Aligned_cols=23  Identities=26%  Similarity=0.777  Sum_probs=19.8

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ..|.|..|+|.|.+...|..|++
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             cceECCCCCChhCCHHHHHHHHH
Confidence            46889999999999999999985

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.51  E-value=0.19  Score=39.85  Aligned_cols=29  Identities=24%  Similarity=0.544  Sum_probs=24.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhcHhHH
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNSRSHI   71 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~SKKHk   71 (389)
                      ...|.|..|+|.|.+...|+.|++...|.
T Consensus        78 ~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           78 QKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            34689999999999999999999765444

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.38  E-value=0.08  Score=38.26  Aligned_cols=54  Identities=15%  Similarity=0.260  Sum_probs=43.0

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceee-ecCCCCCCCCCHHHHHHHHHhC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCL-YCNDRCHPFNSLEAVRKHMEAK  238 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl-~C~~~~k~F~s~eav~~HM~dK  238 (389)
                      .+-.|-+|+..+. ......||.. .|-                       .-+.|- .|+   +.|.....|+.||+  
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~-----------------------~p~~C~~~C~---k~f~~~~~L~~H~~--   58 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPR-----------------------LPVACPNQCG---VGTVAREDLPGHLK--   58 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CSS-----------------------SEEECTTCCS---CCEEETTTHHHHHH--
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cCC-----------------------cCccCCcccC---cccccHHHHHHHHH--
Confidence            4578999999999 8888899986 441                       125898 898   88999999999997  


Q ss_pred             CCccc
Q 016443          239 RHCKI  243 (389)
Q Consensus       239 ~Hcki  243 (389)
                      .||..
T Consensus        59 ~hc~~   63 (66)
T 2eod_A           59 DSCNT   63 (66)
T ss_dssp             TTSSS
T ss_pred             hhccc
Confidence            47643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.30  E-value=0.17  Score=41.02  Aligned_cols=54  Identities=17%  Similarity=0.394  Sum_probs=42.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHH
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHM  235 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM  235 (389)
                      .+-.|-.|+..+.....+..||...|.-...+                   ..+.|-.|+   +.|.+...|+.||
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~e-------------------kpf~C~~Cg---k~F~~~~~L~~H~   70 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLN-------------------SSYVCVECN---FLTKRYDALSEHN   70 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCSSCCCS-------------------CCEEETTTT---EEESSTHHHHTHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhCCCCCCC-------------------CCcCCCCCC---cccCCHHHHHHHH
Confidence            45679999999999999999998777321111                   136899998   8999999999994

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=89.01  E-value=0.28  Score=36.18  Aligned_cols=49  Identities=16%  Similarity=0.356  Sum_probs=40.5

Q ss_pred             cc--ccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHHh
Q 016443          163 CC--FMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       163 ~C--LFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM~d  237 (389)
                      .|  -.|+..+.+......||...++                    +   .-+.|-.  |+   +.|.+...|+.||+.
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------~---~~~~C~~~~C~---~~f~~~~~l~~H~~~   55 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQFSHTQ--------------------Q---LPYECPHEGCD---KRFSLPSRLKRHEKV   55 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHT--------------------T---CCEECCSTTCC---CEESSHHHHHHHHHH
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCC--------------------C---CCeeCCCCCCc---CccCCHHHHHHHHHH
Confidence            58  7899999999999999975443                    1   1268988  98   899999999999975

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=88.86  E-value=0.28  Score=36.64  Aligned_cols=51  Identities=16%  Similarity=0.426  Sum_probs=41.8

Q ss_pred             CCcccc--CCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeee--cCCCCCCCCCHHHHHHHHH
Q 016443          161 PACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY--CNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       161 ~~~CLF--C~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~--C~~~~k~F~s~eav~~HM~  236 (389)
                      +-.|-+  |+..+.+......||...++-                       ..+.|.+  |+   +.|.+...|+.||+
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~l~~H~~   58 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGE-----------------------KPYHCDWDGCG---WKFARSDELTRHYR   58 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSS-----------------------CCEECCSTTTC---CEESSHHHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCC-----------------------CCcCCCCCCCC---CccCCHHHHHHHHH
Confidence            457999  999999999999999865431                       1368875  98   89999999999997


Q ss_pred             h
Q 016443          237 A  237 (389)
Q Consensus       237 d  237 (389)
                      .
T Consensus        59 ~   59 (89)
T 2wbs_A           59 K   59 (89)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.57  E-value=0.32  Score=34.85  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=22.0

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ...+.|.-|++.|+-..++++||+
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CCceeCCcccccccchHHHHhhhh
Confidence            356889999999999999999997

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=88.32  E-value=0.28  Score=38.79  Aligned_cols=20  Identities=25%  Similarity=0.509  Sum_probs=9.8

Q ss_pred             cccccccCcc-CCHHHHHHHh
Q 016443           46 YSCGLCGKGY-RSSKALAQHL   65 (389)
Q Consensus        46 ~~C~~C~K~F-~S~nay~nHl   65 (389)
                      |.|..|+|.| .+...|+.|+
T Consensus        35 ~~C~~C~k~F~~~~~~L~~H~   55 (96)
T 2ctd_A           35 VSCPTCQAVGRKTIEGLKKHM   55 (96)
T ss_dssp             EECTTTCSCEESSHHHHHHHH
T ss_pred             cCCCCCCCCcccCHHHHHHHH
Confidence            4455555555 4555544444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.75  E-value=0.25  Score=37.58  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.6

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      |.|..|+|.|.+...|+.|++.
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRV   84 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHH
T ss_pred             cCCCCCCcccCCHHHHHHHHHh
Confidence            7899999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=87.40  E-value=0.25  Score=28.30  Aligned_cols=22  Identities=23%  Similarity=0.599  Sum_probs=19.1

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         2 ~~C~~C~---k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCE---RSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSC---CBCSSHHHHHHHGGG
T ss_pred             ccCCCCC---CcCCCHHHHHHHHHH
Confidence            4788897   899999999999964

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.13  E-value=0.29  Score=28.24  Aligned_cols=22  Identities=27%  Similarity=0.650  Sum_probs=19.5

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            4 FSCSLCP---QRSRDFSAMTKHLRT   25 (27)
T ss_dssp             EECSSSS---CEESSHHHHHHHHHH
T ss_pred             ccCCCcC---hhhCCHHHHHHHHHH
Confidence            5788997   899999999999974

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=85.82  E-value=0.41  Score=37.49  Aligned_cols=24  Identities=38%  Similarity=0.692  Sum_probs=21.9

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.+...++.|++.
T Consensus        24 kpy~C~~C~k~F~~~~~L~~H~~~   47 (88)
T 1x6f_A           24 STYQCKHCDSKLQSTAELTSHLNI   47 (88)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCCCCEeCCHHHHHHHHHH
Confidence            468999999999999999999975

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.34  E-value=0.36  Score=34.70  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|. ...++.|++.
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~   31 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ   31 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH
Confidence            34689999999999 9999999753

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=85.19  E-value=0.45  Score=29.30  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            3 FACPECP---KRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCSSSC---CCCSSHHHHHHHHHH
T ss_pred             ccCCCCC---chhCCHHHHHHHHHH
Confidence            5799998   899999999999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.19  E-value=0.44  Score=31.71  Aligned_cols=24  Identities=25%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             ccccccccCccCCHHHHHHHhhcH
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSR   68 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SK   68 (389)
                      .|.|.+|.|.|.|.+.+..|-.++
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~   28 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAV   28 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhc
Confidence            478999999999999999998653

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=85.05  E-value=0.5  Score=38.25  Aligned_cols=25  Identities=16%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             CCCccccccccCccCCHHHHHHHhh
Q 016443           42 TPMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        42 ~~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ....|.|..|+|.|.+...|+.|++
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r   39 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVD   39 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHH
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHH
Confidence            4456899999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=84.66  E-value=0.34  Score=28.10  Aligned_cols=22  Identities=27%  Similarity=0.783  Sum_probs=19.5

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         4 ~~C~~C~---~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            4 YQCDYCG---RSFSDPTSKMRHLET   25 (30)
T ss_dssp             EECTTTC---CEESCHHHHHHHHHT
T ss_pred             ccCCCCC---cccCCHHHHHHHHHH
Confidence            5788997   899999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=84.57  E-value=0.48  Score=27.36  Aligned_cols=22  Identities=27%  Similarity=0.777  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            3 FVCEVCT---RAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCTTTC---CBCSSHHHHHHHHHH
T ss_pred             eECCCCC---cccCCHHHHHHHHHH
Confidence            5788897   899999999999975

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=84.17  E-value=0.37  Score=27.86  Aligned_cols=22  Identities=18%  Similarity=0.545  Sum_probs=19.3

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+-
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            4 YSCSVCG---KRFSLKHQMETHYRV   25 (28)
T ss_dssp             EECSSSC---CEESCHHHHHHHHTT
T ss_pred             ccCCCCC---cccCCHHHHHHHHHh
Confidence            5788997   899999999999963

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=83.92  E-value=0.43  Score=40.49  Aligned_cols=29  Identities=28%  Similarity=0.560  Sum_probs=25.8

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHhCCCccc
Q 016443          212 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKI  243 (389)
Q Consensus       212 ~~~Cl~C~~~~k~F~s~eav~~HM~dK~Hcki  243 (389)
                      ..+||+|.   +.|.+.+.+-+||+++.++-+
T Consensus        15 ~~~CLFCd---~~~~s~~~~l~H~k~~H~FD~   43 (121)
T 1wir_A           15 HTPCLFCD---RLFASAEETFSHCKLEHQFNI   43 (121)
T ss_dssp             CEECSSSC---CEESSHHHHHHHHHHSSCCCH
T ss_pred             ceeEecCC---CcccCHHHHHHHHHHhcCCCH
Confidence            35899999   789999999999999988755

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=84.35  E-value=0.21  Score=28.65  Aligned_cols=22  Identities=18%  Similarity=0.579  Sum_probs=19.3

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            3 YVCERCG---KRFVQSSQLANHIRH   24 (26)
Confidence            5799998   899999999999963

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.67  E-value=0.41  Score=27.60  Aligned_cols=22  Identities=18%  Similarity=0.620  Sum_probs=19.4

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            3 LKCRECG---KQFTTSGNLKRHLRI   24 (29)
T ss_dssp             EECTTTS---CEESCHHHHHHHHHH
T ss_pred             ccCCCCC---CccCChhHHHHHHHH
Confidence            5788897   899999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=83.48  E-value=0.34  Score=28.18  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHH
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~  236 (389)
                      +.|-.|+   +.|.....|+.||+
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            4 YRCPLCR---AGCPSLASMQAHMR   24 (27)
T ss_dssp             EEETTTT---EEESCHHHHHHHHT
T ss_pred             cCCCCCC---cccCCHHHHHHHHH
Confidence            5799997   89999999999996

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=83.20  E-value=0.25  Score=33.28  Aligned_cols=25  Identities=20%  Similarity=0.525  Sum_probs=21.5

Q ss_pred             CCccccc--cccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCG--LCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~--~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|.  .|+|.|.....++.|++.
T Consensus        16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           16 DKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            3468996  699999999999999864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.20  E-value=0.46  Score=29.24  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          212 DFMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       212 ~~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      -+.|-.|+   +.|.....|+.||+.
T Consensus         9 ~~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            9 PYKCPQCS---YASAIKANLNVHLRK   31 (36)
T ss_dssp             SEECSSSS---CEESSHHHHHHHHHH
T ss_pred             CCCCCCCC---cccCCHHHHHHHHHH
Confidence            36899998   899999999999973

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=83.08  E-value=0.67  Score=33.46  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             CCcccccc--ccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..  |+|.|.+...|+.|++.
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~   41 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRT   41 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHH
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHh
Confidence            35689999  99999999999999853

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.06  E-value=0.58  Score=28.76  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+-
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elr_A           10 HLCDMCG---KKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CBCTTTC---CBCSSHHHHHHHHHH
T ss_pred             eecCcCC---CCcCchHHHHHHHHH
Confidence            5899997   899999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.64  E-value=0.54  Score=29.18  Aligned_cols=22  Identities=18%  Similarity=0.677  Sum_probs=19.8

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (37)
T 2elo_A           10 YSCPVCE---KSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CEETTTT---EECSSHHHHHHHHHH
T ss_pred             cCCCCCC---CccCCHHHHHHHHHH
Confidence            6899998   899999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=82.64  E-value=0.5  Score=28.80  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         8 ~~C~~C~---k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            8 YVCALCL---KKFVSSIRLRSHIRE   29 (35)
T ss_dssp             EECSSSC---CEESSHHHHHHHHHH
T ss_pred             eECCCCc---chhCCHHHHHHHHHH
Confidence            5899998   899999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.30  E-value=0.46  Score=29.40  Aligned_cols=22  Identities=32%  Similarity=0.798  Sum_probs=19.7

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.....|+.||+-
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2els_A           10 FTCEYCN---KVFKFKHSLQAHLRI   31 (36)
T ss_dssp             EECTTTC---CEESSHHHHHHHHHH
T ss_pred             EECCCCC---ceeCCHHHHHHHHHH
Confidence            5899997   899999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.11  E-value=0.55  Score=29.04  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.8

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elq_A           10 FKCSLCE---YATRSKSNLKAHMNR   31 (36)
T ss_dssp             EECSSSS---CEESCHHHHHHHHHH
T ss_pred             ccCCCCC---chhCCHHHHHHHHHH
Confidence            5899998   899999999999974

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=81.97  E-value=0.53  Score=28.84  Aligned_cols=22  Identities=23%  Similarity=0.676  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         8 ~~C~~C~---k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            8 FVCRICL---SAFTTKANCARHLKV   29 (35)
T ss_dssp             EECSSSC---CEESSHHHHHHHHGG
T ss_pred             eeCCCCC---cccCCHHHHHHHHHH
Confidence            5899997   899999999999964

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=81.79  E-value=0.62  Score=28.90  Aligned_cols=22  Identities=23%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus        12 ~~C~~C~---k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A           12 FQCPDCD---RSFSRSDHLALHRKR   33 (37)
T ss_dssp             BCCTTTC---CCBSSHHHHHHHHGG
T ss_pred             ccCCCCC---cccCcHHHHHHHHHH
Confidence            5899997   899999999999964

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=82.49  E-value=0.29  Score=28.64  Aligned_cols=22  Identities=23%  Similarity=0.774  Sum_probs=19.3

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         4 ~~C~~C~---k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            4 YVCIHCQ---RQFADPGALQRHVRI   25 (30)
Confidence            5799998   899999999999963

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=81.36  E-value=0.52  Score=27.03  Aligned_cols=22  Identities=23%  Similarity=0.670  Sum_probs=19.1

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+-
T Consensus         3 ~~C~~C~---~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            3 HKCPHCD---KKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCSSCC---CCCCTTTHHHHHHHH
T ss_pred             CcCCCCC---cccCCHHHHHHHHHH
Confidence            5788998   899999999999973

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=82.12  E-value=0.3  Score=28.53  Aligned_cols=21  Identities=19%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHH
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~  236 (389)
                      +.|-.|+   +.|.+...|+.||+
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            3 CQCVMCG---KAFTQASSLIAHVR   23 (29)
Confidence            5799998   89999999999996

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=81.00  E-value=1  Score=30.98  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCC
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNS  227 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s  227 (389)
                      .+-.|-.|+..+.....+..||...|.--                      .-+.|-.|+   +.|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~----------------------k~~~C~~C~---k~F~~   53 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTSE----------------------RPHKCQVWV---SGPSS   53 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCC----------------------CCCCSSSSC---CSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC----------------------CCccCCCCC---CCCCC
Confidence            45689999999999999999998777421                      136899998   77875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=80.94  E-value=0.25  Score=42.10  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=26.5

Q ss_pred             CceeeecCCCCCCCCCHHHHHHHHHhCCCccc
Q 016443          212 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKI  243 (389)
Q Consensus       212 ~~~Cl~C~~~~k~F~s~eav~~HM~dK~Hcki  243 (389)
                      -+.|..|+   |.|.+...|+.|++.|.|-+-
T Consensus        50 pfyC~~C~---K~F~~~~~L~~H~rsK~HKrr   78 (124)
T 1zr9_A           50 LHRCLACA---RYFIDSTNLKTHFRSKDHKKR   78 (124)
T ss_dssp             CSEETTTT---EECSSHHHHHHHTTCHHHHHH
T ss_pred             ceEcccCc---chhCCHHHHHHHHhhhhhhHH
Confidence            46999998   999999999999999999874

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=80.86  E-value=0.42  Score=27.69  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.+...|+.||+.
T Consensus         3 ~~C~~C~---k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            3 FACPECP---KRFMRSDHLTLHILL   24 (29)
T ss_dssp             EECSSSS---CEESCSHHHHHHHTG
T ss_pred             ccCCCCC---chhCCHHHHHHHHHH
Confidence            5788897   899999999999964

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.68  E-value=0.57  Score=28.94  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   +.|.....|+.||+.
T Consensus        10 ~~C~~C~---k~f~~~~~l~~H~~~   31 (36)
T 2elv_A           10 YDCHICE---RKFKNELDRDRHMLV   31 (36)
T ss_dssp             EECSSSC---CEESSHHHHHHHHTT
T ss_pred             eECCCCC---CccCCHHHHHHHHHH
Confidence            5899998   899999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	98.74
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.43
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.63
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.05
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	95.79
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	95.67
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.67
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	95.61
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.48
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.45
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.33
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	95.19
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	95.11
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.9
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.66
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.29
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.2
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.1
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.95
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	93.91
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	93.62
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	92.77
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	92.69
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	92.07
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	91.88
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.43
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.18
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	91.14
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.8
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	90.63
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.06
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	89.59
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.41
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	88.97
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	88.96
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	88.42
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	88.07
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	87.64
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	87.14
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.68
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	84.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	83.98
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	83.39
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	82.52
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	81.77
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	81.51
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.28
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	80.72
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	80.12

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=9.2e-10  Score=92.24  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=45.8

Q ss_pred             CCCccccCCCCCCCHHHHHHHhhhhcCCCCCCcc--c-c--cCHHHHHHHHHHHhc
Q 016443          160 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVE--Y-L--KDPKGLLTYLGLKVK  210 (389)
Q Consensus       160 ~~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~e--y-l--vd~~gLl~YL~~kI~  210 (389)
                      .++.||||++.+.+++..+.||...|+|+|....  + |  |+.++||||||+++.
T Consensus        14 ~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~~~~~LDfY~~IKLINYIR~~~~   69 (121)
T d1wira_          14 QHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNP   69 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHHHHTTCCHHHHHHHHHHHHHTCC
T ss_pred             ccceecccCCccCCHHHHHHHHHHhhCCCHHHHHHHcCCCccceEEEEeeeecccC
Confidence            5788999999999999999999999999999863  3 3  889999999999864

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.4e-08  Score=74.31  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=29.7

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHHhhhcC
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      |+|..|+|.|.|+++|++|++||+||.++++.
T Consensus        16 fYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L   47 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   47 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             EecccccCccCCHHHHHHHHcccHHHHHHHHh
Confidence            68999999999999999999999999987754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0003  Score=43.01  Aligned_cols=27  Identities=26%  Similarity=0.753  Sum_probs=25.1

Q ss_pred             ccccccccCccCCHHHHHHHhhcHhHH
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSRSHI   71 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SKKHk   71 (389)
                      +|.|..|+-+|.+...+..||+||.|.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhc
Confidence            378999999999999999999999984

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.05  E-value=0.0017  Score=40.33  Aligned_cols=23  Identities=22%  Similarity=0.728  Sum_probs=21.4

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      +|.|.+|+|.|.....++.|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCCCCCCCCCCCCchHcccccCc
Confidence            58899999999999999999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0026  Score=41.15  Aligned_cols=26  Identities=19%  Similarity=0.511  Sum_probs=22.9

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 016443           42 TPMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        42 ~~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...+|.|.+|+|.|.....++.|++.
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccccCCCCCCcccChHHHHHHccc
Confidence            34579999999999999999999963

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0027  Score=39.16  Aligned_cols=23  Identities=22%  Similarity=0.748  Sum_probs=21.5

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      +|.|..|+|.|+....+..|++.
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCCC
Confidence            58999999999999999999975

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0031  Score=40.98  Aligned_cols=26  Identities=19%  Similarity=0.540  Sum_probs=23.1

Q ss_pred             CCccccccccCccCCHHHHHHHhhcH
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNSR   68 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~SK   68 (389)
                      ..+|.|.+|+|.|+....++.|++..
T Consensus         6 ekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           6 EKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCEeCCCCcccccchHHHHHHcccc
Confidence            45789999999999999999998764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.0042  Score=40.46  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=22.8

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 016443           42 TPMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        42 ~~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...+|.|..|+|+|.....++.|++.
T Consensus         8 geKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CccCeEeCCCCCEecCHHHHHHHHhc
Confidence            34579999999999999999999863

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0038  Score=40.48  Aligned_cols=25  Identities=28%  Similarity=0.700  Sum_probs=22.5

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..+|.|..|+|.|.....|+.|++.
T Consensus         6 ekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCCCcCCHhHHHHhCcc
Confidence            4579999999999999999999964

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.004  Score=39.76  Aligned_cols=25  Identities=36%  Similarity=0.671  Sum_probs=22.3

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..+|.|..|+|+|...+.|..|++.
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCeeCCCCCCEeCchHHhHhhccc
Confidence            3578999999999999999999874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0037  Score=41.40  Aligned_cols=24  Identities=33%  Similarity=0.809  Sum_probs=21.8

Q ss_pred             CccccccccCccCCHHHHHHHhhc
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ..|.|..|+|.|.....++.||++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~   27 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQ   27 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCcC
Confidence            468999999999999999999864

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0038  Score=37.85  Aligned_cols=23  Identities=30%  Similarity=0.689  Sum_probs=21.0

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      +|.|..|+|.|+....+..|.+-
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccC
Confidence            58999999999999999999863

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.004  Score=38.63  Aligned_cols=23  Identities=26%  Similarity=0.700  Sum_probs=21.5

Q ss_pred             ccccccccCccCCHHHHHHHhhc
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..|+|.|.....+..|++.
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CEECCcCCCeecchHHhhhhcCc
Confidence            58899999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0072  Score=39.50  Aligned_cols=26  Identities=31%  Similarity=0.698  Sum_probs=22.9

Q ss_pred             CCCccccccccCccCCHHHHHHHhhc
Q 016443           42 TPMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        42 ~~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...+|.|..|+|.|.....|..|++.
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCcc
Confidence            34578999999999999999999874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0056  Score=37.24  Aligned_cols=27  Identities=41%  Similarity=0.844  Sum_probs=24.2

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  242 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~dK~Hck  242 (389)
                      +.|-+|++   .|++.-.|-.||.+|.|.|
T Consensus         2 y~C~~CnF---~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCNF---SFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSSC---EESSHHHHHHHHHSSSSCC
T ss_pred             cccceeee---eEeeccchhHhhhhhhhcc
Confidence            47999995   7899999999999999975

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.66  E-value=0.0079  Score=39.31  Aligned_cols=25  Identities=36%  Similarity=0.906  Sum_probs=22.3

Q ss_pred             CccccccccCccCCHHHHHHHhhcH
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNSR   68 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~SK   68 (389)
                      ..|.|.+|+|.|.|-.|+==||++-
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTT
T ss_pred             CccCCCCCCCccCCcccccchHhhh
Confidence            3589999999999999999999764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.003  Score=46.70  Aligned_cols=41  Identities=29%  Similarity=0.476  Sum_probs=33.5

Q ss_pred             CCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHHhCCCcc
Q 016443          190 PDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK  242 (389)
Q Consensus       190 P~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~dK~Hck  242 (389)
                      |+.++=.|+.|+         ..+-|+.|+   |.|.|..+++.|++.|.|-|
T Consensus         2 ~~~e~D~D~pG~---------gqfYCv~C~---K~F~se~~l~~H~ksKkHKr   42 (67)
T d1zr9a1           2 PNAEFDPDLPGG---------GLHRCLACA---RYFIDSTNLKTHFRSKDHKK   42 (67)
T ss_dssp             CSCSSCSSSGGG---------GCSEETTTT---EECSSHHHHHHHTTCHHHHH
T ss_pred             CCCCCCCCCCCC---------CEEeccccc---CccCCHHHHHHHHcccHHHH
Confidence            445555677764         247999999   99999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.015  Score=34.33  Aligned_cols=23  Identities=26%  Similarity=0.696  Sum_probs=21.0

Q ss_pred             cccccccCccCCHHHHHHHhhcH
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSR   68 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SK   68 (389)
                      ..|.+|+|-|+-..-++.||+|.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CccchhhhHhcchhHHHHHhhcc
Confidence            36999999999999999999984

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.011  Score=36.75  Aligned_cols=23  Identities=26%  Similarity=0.688  Sum_probs=20.9

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 016443           45 TYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.+  |+|.|.....++.|++.
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCccccc
Confidence            578988  99999999999999974

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.015  Score=36.22  Aligned_cols=23  Identities=35%  Similarity=0.678  Sum_probs=21.0

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 016443           45 TYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..  |+|.|.....++.|++.
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcCc
Confidence            478999  99999999999999964

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.0078  Score=41.22  Aligned_cols=32  Identities=28%  Similarity=0.625  Sum_probs=29.3

Q ss_pred             cccccccCccCCHHHHHHHhhcHhHHHhhhcC
Q 016443           46 YSCGLCGKGYRSSKALAQHLNSRSHIMRASQG   77 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~~   77 (389)
                      -.|.+|+..|++.-+.+.|+-|+.|..++...
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~   38 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRET   38 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHH
Confidence            36999999999999999999999999987754

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.62  E-value=0.019  Score=40.53  Aligned_cols=29  Identities=21%  Similarity=0.477  Sum_probs=27.1

Q ss_pred             ccccccCccCCHHHHHHHhhcHhHHHhhh
Q 016443           47 SCGLCGKGYRSSKALAQHLNSRSHIMRAS   75 (389)
Q Consensus        47 ~C~~C~K~F~S~nay~nHl~SKKHk~~~~   75 (389)
                      .|.+|+.+|+|...-++|-.=|+|..+..
T Consensus        23 ~C~lCn~~Fns~~~AqsHY~GK~H~K~lk   51 (55)
T d1zu1a2          23 CCPVCNMTFSSPVVAESHYIGKTHIKNLR   51 (55)
T ss_dssp             EETTTTEECSSHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhhhcccCCHHHHHHHhhhhHHHHHHH
Confidence            49999999999999999999999999754

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.022  Score=39.13  Aligned_cols=25  Identities=32%  Similarity=0.821  Sum_probs=21.8

Q ss_pred             CCccccccccCccCCHHHHHHHhhc
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      ...|.|..|+|.|.....|..|++.
T Consensus        28 ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1          28 LRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             ccCCcCCCcCCEecCHHHHHHHHhc
Confidence            3468999999999999999999863

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.69  E-value=0.026  Score=35.57  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=21.2

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 016443           45 TYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.+  |+|.|+....++.|+++
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhhh
Confidence            588999  99999999999999875

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.07  E-value=0.025  Score=46.16  Aligned_cols=41  Identities=29%  Similarity=0.561  Sum_probs=32.4

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHhCCCccccCCCCChhHHHHhh-hhccc
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELE-EFYDY  262 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~dK~Hcki~~~~~~~e~~~e~~-~FYDf  262 (389)
                      -.||+|.   +.|.|...+-+||+.+.++-|.      .-..++. +||++
T Consensus        16 ~~CLFCd---~~f~s~~~~l~H~k~~H~FD~~------~~~~~~~LDfY~~   57 (121)
T d1wira_          16 TPCLFCD---RLFASAEETFSHCKLEHQFNID------SMVHKHGLEFYGY   57 (121)
T ss_dssp             EECSSSC---CEESSHHHHHHHHHHSSCCCHH------HHHHHTTCCHHHH
T ss_pred             ceecccC---CccCCHHHHHHHHHHhhCCCHH------HHHHHcCCCccce
Confidence            4899999   7999999999999998887664      2234443 79987

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.88  E-value=0.035  Score=34.17  Aligned_cols=23  Identities=26%  Similarity=0.777  Sum_probs=20.6

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 016443           45 TYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.+  |+|.|.....++.|++.
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCc
Confidence            578988  99999999999999863

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.43  E-value=0.058  Score=32.63  Aligned_cols=25  Identities=24%  Similarity=0.655  Sum_probs=23.0

Q ss_pred             CccccccccCccCCHHHHHHHhhcH
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLNSR   68 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~SK   68 (389)
                      +.|+|.+|+.+|.-.-.++-||-|.
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvsh   27 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSH   27 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecc
Confidence            5789999999999999999999874

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.18  E-value=0.064  Score=36.64  Aligned_cols=23  Identities=39%  Similarity=0.755  Sum_probs=20.6

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ..|.|.+|+|.|...+.++||-.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             ceeeccccccccCCHHHHhHhHH
Confidence            46889999999999999999954

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.064  Score=33.36  Aligned_cols=23  Identities=30%  Similarity=0.767  Sum_probs=20.2

Q ss_pred             ccccc--cccCccCCHHHHHHHhhc
Q 016443           45 TYSCG--LCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~--~C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.  -|+|.|.....++.|++.
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCc
Confidence            47896  599999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.025  Score=34.68  Aligned_cols=23  Identities=30%  Similarity=0.733  Sum_probs=20.7

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 016443           45 TYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      .|.|..  |+|.|.....++.|++.
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            478999  99999999999999964

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=90.63  E-value=0.2  Score=36.62  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHHHHHHHhhhccCCCCccccccccCccCCHHHHHHHhhcHhHHHhhhc
Q 016443           20 GVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        20 PVTaE~F~~k~~~~a~~~~~~~~~~~~~C~~C~K~F~S~nay~nHl~SKKHk~~~~~   76 (389)
                      ||..|+-.....    +...  --....|.+|+-...|+..-..|-.||||..++..
T Consensus        13 P~g~e~v~~~iq----e~~~--lFtd~~CkvC~a~L~seSQriaHYeskkHa~kvr~   63 (72)
T d1zu1a1          13 PVGKDAVNSLIR----ENSH--IFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRR   63 (72)
T ss_dssp             CCSHHHHHHHHH----HTTT--TBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH----hhhh--hcchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688886665431    1111  11123599999999999999999999999998764

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.077  Score=32.45  Aligned_cols=23  Identities=35%  Similarity=0.849  Sum_probs=20.9

Q ss_pred             cccccc--ccCccCCHHHHHHHhhc
Q 016443           45 TYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        45 ~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      .|.|.+  |.|+|....+++.|+++
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            478988  99999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.075  Score=36.22  Aligned_cols=49  Identities=24%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcCCCCCCcccccCHHHHHHHHHHHhcCCceeeecCCCCCCCCCHHHHHHHHH
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME  236 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~F~IP~~eylvd~~gLl~YL~~kI~~~~~Cl~C~~~~k~F~s~eav~~HM~  236 (389)
                      +-.|= |+..+........||. .|.=                   +   .-+.|-.|+   +.|.....|..||+
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~-~Ht~-------------------e---kpy~C~~C~---k~F~~~~~L~~H~r   51 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMS-MHLG-------------------L---RPYGCGVCG---KKFKMKHHLVGHMK   51 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHH-HHSC-------------------C---CSEECTTTS---CEESSSHHHHHHHT
T ss_pred             CCCCC-CCCeECCHHHhHHHhh-cccc-------------------c---cCCcCCCcC---CEecCHHHHHHHHh
Confidence            34684 9999999999999986 5651                   1   236999998   89999999999996

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.41  E-value=0.12  Score=32.41  Aligned_cols=24  Identities=29%  Similarity=0.664  Sum_probs=20.8

Q ss_pred             CCccccccccCccCCHHHHHHHhh
Q 016443           43 PMTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        43 ~~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      +.-|.|.+|+-.|+|..+++.|..
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            345789999999999999999963

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.091  Score=33.73  Aligned_cols=22  Identities=36%  Similarity=0.818  Sum_probs=20.3

Q ss_pred             ccccc--ccCccCCHHHHHHHhhc
Q 016443           46 YSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      |.|..  |+|.|.....++.|++.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~   25 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL   25 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH
T ss_pred             eECCCCCCCCeeCChhHhccccCe
Confidence            67887  99999999999999986

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.11  Score=32.80  Aligned_cols=23  Identities=26%  Similarity=0.777  Sum_probs=19.8

Q ss_pred             CccccccccCccCCHHHHHHHhh
Q 016443           44 MTYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        44 ~~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      ..|.|.-|+|+|.-.|+...|..
T Consensus         3 ~afvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             ceeeecccccchhcchHHHHHhh
Confidence            45789999999999999988753

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.11  Score=37.31  Aligned_cols=32  Identities=19%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             ccccccccCccC--CHHHHHHHhhcHhHHHhhhc
Q 016443           45 TYSCGLCGKGYR--SSKALAQHLNSRSHIMRASQ   76 (389)
Q Consensus        45 ~~~C~~C~K~F~--S~nay~nHl~SKKHk~~~~~   76 (389)
                      -|.|.+|++-|.  |.+.=+.|+..++|++++..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~   36 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD   36 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHH
Confidence            367999999994  45667899999999998764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.07  E-value=0.15  Score=30.73  Aligned_cols=22  Identities=23%  Similarity=0.785  Sum_probs=19.6

Q ss_pred             ccccccccCccCCHHHHHHHhh
Q 016443           45 TYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      +|.|.+|++.|.-...-+-|.+
T Consensus         3 Pf~C~~CgrkFArsderkRH~k   24 (28)
T d1a1ia3           3 PFACDICGRKFARSDERKRHTK   24 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHHG
T ss_pred             Ccccchhhhhhhcchhhhhhhh
Confidence            5889999999999999888865

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=87.64  E-value=0.12  Score=31.59  Aligned_cols=22  Identities=27%  Similarity=0.777  Sum_probs=20.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   |.|.....|+.||+-
T Consensus         3 ~~C~~C~---k~F~~~~~L~~H~r~   24 (29)
T d2adra1           3 FVCEVCT---RAFARQEHLKRHYRS   24 (29)
T ss_dssp             BCCTTTC---CCBSCHHHHHHHHHT
T ss_pred             CCCCCCC---CCCCCchHcccccCc
Confidence            5899998   899999999999974

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.14  E-value=0.059  Score=36.65  Aligned_cols=26  Identities=19%  Similarity=0.588  Sum_probs=22.6

Q ss_pred             CCCcccccc--ccCccCCHHHHHHHhhc
Q 016443           42 TPMTYSCGL--CGKGYRSSKALAQHLNS   67 (389)
Q Consensus        42 ~~~~~~C~~--C~K~F~S~nay~nHl~S   67 (389)
                      ....|.|.+  |+|.|+....++.|++.
T Consensus        15 gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          15 PDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             CCCCeECCcCCCCccccCchHHHhhccc
Confidence            345799988  99999999999999874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.21  Score=30.77  Aligned_cols=22  Identities=23%  Similarity=0.827  Sum_probs=19.8

Q ss_pred             ceeee--cCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLY--CNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~--C~~~~k~F~s~eav~~HM~d  237 (389)
                      ++|-+  |+   |.|.....|+.||+-
T Consensus         3 ~~C~~~gCg---k~F~~~~~L~~H~r~   26 (30)
T d2glia3           3 HKCTFEGCR---KSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCSTTCC---CCCSSHHHHHHHHHH
T ss_pred             eeCCCCCCC---ceECChhHhhhhcCc
Confidence            58989  98   899999999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.58  E-value=0.17  Score=32.28  Aligned_cols=22  Identities=23%  Similarity=0.676  Sum_probs=19.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   |.|.....|+.||+-
T Consensus         8 y~C~~C~---k~F~~~~~L~~H~r~   29 (35)
T d1srka_           8 FVCRICL---SAFTTKANCARHLKV   29 (35)
T ss_dssp             EECSSSC---CEESSHHHHHHHHGG
T ss_pred             ccCCCCC---CcccChHHHHHHccc
Confidence            5899998   899999999999973

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=0.23  Score=29.08  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=20.0

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   |.|+-...|..||+.
T Consensus         2 hkc~~c~---kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCG---KCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTT---BCCCCHHHHHHHGGG
T ss_pred             Cccchhh---hHhcchhHHHHHhhc
Confidence            5799998   899999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.39  E-value=0.19  Score=30.40  Aligned_cols=22  Identities=23%  Similarity=0.641  Sum_probs=19.9

Q ss_pred             ceeeecCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLYCNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~C~~~~k~F~s~eav~~HM~d  237 (389)
                      +.|-.|+   |.|.-...|..||+-
T Consensus         4 y~C~~C~---k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           4 FQCRICM---RNFSRSDHLTTHIRT   25 (28)
T ss_dssp             EECTTTC---CEESCHHHHHHHHHH
T ss_pred             ccCCCCc---CEecccccccccCCC
Confidence            5899998   899999999999974

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=82.52  E-value=0.42  Score=27.64  Aligned_cols=22  Identities=36%  Similarity=0.909  Sum_probs=19.8

Q ss_pred             cccccccCccCCHHHHHHHhhc
Q 016443           46 YSCGLCGKGYRSSKALAQHLNS   67 (389)
Q Consensus        46 ~~C~~C~K~F~S~nay~nHl~S   67 (389)
                      |.|.+|..+|--..|+..|.+-
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            5799999999999999999764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.77  E-value=0.44  Score=27.97  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=17.8

Q ss_pred             ccccccCccCCHHHHHHHhh
Q 016443           47 SCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        47 ~C~~C~K~F~S~nay~nHl~   66 (389)
                      .|.+|.|+|-|.--++.|-+
T Consensus         2 qcp~c~k~f~skyylkvhnr   21 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR   21 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccc
Confidence            59999999999999988864

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=0.29  Score=30.00  Aligned_cols=22  Identities=27%  Similarity=0.671  Sum_probs=19.6

Q ss_pred             ceeee--cCCCCCCCCCHHHHHHHHHh
Q 016443          213 FMCLY--CNDRCHPFNSLEAVRKHMEA  237 (389)
Q Consensus       213 ~~Cl~--C~~~~k~F~s~eav~~HM~d  237 (389)
                      ++|-+  |+   |.|.....|..||+-
T Consensus         3 ~~C~~~gCg---k~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           3 FQCTFEGCG---KRFSLDFNLRTHVRI   26 (30)
T ss_dssp             EECCSTTCC---CEESCHHHHHHHHHH
T ss_pred             ccCCCCCCC---ceECcHHHcCccccc
Confidence            57888  98   899999999999974

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.28  E-value=0.39  Score=29.31  Aligned_cols=24  Identities=29%  Similarity=0.798  Sum_probs=21.8

Q ss_pred             ccccccccCccCCHHHHHHHhhcH
Q 016443           45 TYSCGLCGKGYRSSKALAQHLNSR   68 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~SK   68 (389)
                      .|+|.+|+..|.-..-..-|++|.
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CcccchHHHHhhccccceEeeecc
Confidence            589999999999999999999884

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.72  E-value=0.47  Score=27.43  Aligned_cols=22  Identities=27%  Similarity=0.709  Sum_probs=20.4

Q ss_pred             ccccccccCccCCHHHHHHHhh
Q 016443           45 TYSCGLCGKGYRSSKALAQHLN   66 (389)
Q Consensus        45 ~~~C~~C~K~F~S~nay~nHl~   66 (389)
                      .|.|..|...|--...++.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999985

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.12  E-value=0.32  Score=29.32  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=22.7

Q ss_pred             CCccccCCCCCCCHHHHHHHhhhhcC
Q 016443          161 PACCFMCDLPHDAIENCMVHMHKCHG  186 (389)
Q Consensus       161 ~~~CLFC~~~s~s~e~nl~HM~~~H~  186 (389)
                      |-.|-||..........-.||.+.||
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            45699999888888888899999998