Citrus Sinensis ID: 016484

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MVLSILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAIFNM
cHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcEcEcccccccccccccEccccEcccccEccccEcccccccEEHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHcccccHHHccccccEEEEEccEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHccHHccccHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcc
MVLSIlrkmdpvtkFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILffegqrsgrlppnqqltwrgnsglsdgssyhvdlvggyydagdnvkfglpmAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLlkastatpgalyvqvgdpnmdhhcwerpedmdtprnvykvstqnpgsdVAAETAAALAAASVvfkdsdpsysTKLLKTAMKVFDFadkyrgsysdslnsvvcpfycsysgyldELLWGASWLHRASQNSSYLAYIQSnghilgaddddysfswddkraGTKVLLSKGFLEKNTQEFQLYKahsdnyicslipgsssfqaqytaglvnePLVALFFTLRLFssrklaskgsvynTIFLQGGFSTKQVRAIFNM
mvlsilrkmdpvtKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASvvfkdsdpsYSTKLLKTAMKVFDFADKYrgsysdslnsVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTiflqggfstkqVRAIFNM
MVLSILRKMDPVTKFSLTLQIlgltlcalsllcsaFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVaaetaaalaaaSVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGAddddysfswddKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAIFNM
****ILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQ***********TWRG***LSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWE****************************AALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAI***
*************KFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAIFNM
MVLSILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAIFNM
*VLSILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAIFNM
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLSILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVNEPLVALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAIFNM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
P05522 494 Endoglucanase 1 OS=Persea N/A no 0.817 0.643 0.801 1e-147
Q6YXT7 523 Endoglucanase 19 OS=Oryza yes no 0.789 0.586 0.711 1e-132
Q6Z715 503 Endoglucanase 4 OS=Oryza no no 0.820 0.634 0.644 1e-120
Q8LQ92 499 Endoglucanase 3 OS=Oryza no no 0.776 0.605 0.640 1e-116
Q9SRX3 501 Endoglucanase 1 OS=Arabid yes no 0.771 0.598 0.673 1e-115
O81416 516 Endoglucanase 17 OS=Arabi no no 0.776 0.585 0.669 1e-114
Q652F9 497 Endoglucanase 17 OS=Oryza no no 0.814 0.637 0.608 1e-106
Q6Z2J3 508 Endoglucanase 6 OS=Oryza no no 0.776 0.594 0.621 1e-105
Q9CAC1 492 Endoglucanase 8 OS=Arabid no no 0.776 0.613 0.610 1e-104
O49296 489 Endoglucanase 4 OS=Arabid no no 0.809 0.644 0.603 1e-104
>sp|P05522|GUN1_PERAE Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/318 (80%), Positives = 282/318 (88%)

Query: 24  LTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVD 83
           L +C + + C + +   YSDAL KSILFFEGQRSG+LP NQ+LTWRG+SGLSDGSSYHVD
Sbjct: 13  LLVCTVMVKCCSASDLHYSDALEKSILFFEGQRSGKLPTNQRLTWRGDSGLSDGSSYHVD 72

Query: 84  LVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTA 143
           LVGGYYDAGDN+KFGLPMAFTTT+L+W +IEFG  M   +ENA+AA+RW TDYLLKASTA
Sbjct: 73  LVGGYYDAGDNLKFGLPMAFTTTMLAWGIIEFGCLMPEQVENARAALRWSTDYLLKASTA 132

Query: 144 TPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKD 203
           T  +LYVQVG+PN DH CWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAAS+VF D
Sbjct: 133 TSNSLYVQVGEPNADHRCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASIVFGD 192

Query: 204 SDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRAS 263
           SD SYSTKLL TA+KVF+FAD+YRGSYSDSL SVVCPFYCSYSGY DELLWGASWLHRAS
Sbjct: 193 SDSSYSTKLLHTAVKVFEFADQYRGSYSDSLGSVVCPFYCSYSGYNDELLWGASWLHRAS 252

Query: 264 QNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNY 323
           QN+SY+ YIQSNGH LGADDDDYSFSWDDKR GTKVLLSKGFL+   +E QLYK H+DNY
Sbjct: 253 QNASYMTYIQSNGHTLGADDDDYSFSWDDKRVGTKVLLSKGFLQDRIEELQLYKVHTDNY 312

Query: 324 ICSLIPGSSSFQAQYTAG 341
           ICSLIPG+SSFQAQYT G
Sbjct: 313 ICSLIPGTSSFQAQYTPG 330
Involved in ripening fruit process.
Persea americana (taxid: 3435)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 4
>sp|Q6YXT7|GUN19_ORYSJ Endoglucanase 19 OS=Oryza sativa subsp. japonica GN=Os08g0114200 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z715|GUN4_ORYSJ Endoglucanase 4 OS=Oryza sativa subsp. japonica GN=GLU14 PE=2 SV=1 Back     alignment and function description
>sp|Q8LQ92|GUN3_ORYSJ Endoglucanase 3 OS=Oryza sativa subsp. japonica GN=GLU8 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRX3|GUN1_ARATH Endoglucanase 1 OS=Arabidopsis thaliana GN=CEL2 PE=2 SV=1 Back     alignment and function description
>sp|O81416|GUN17_ARATH Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1 Back     alignment and function description
>sp|Q652F9|GUN17_ORYSJ Endoglucanase 17 OS=Oryza sativa subsp. japonica GN=GLU13 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2J3|GUN6_ORYSJ Endoglucanase 6 OS=Oryza sativa subsp. japonica GN=Os02g0733300 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAC1|GUN8_ARATH Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1 Back     alignment and function description
>sp|O49296|GUN4_ARATH Endoglucanase 4 OS=Arabidopsis thaliana GN=At1g23210 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
2290681 505 acidic cellulase [Citrus sinensis] 0.876 0.675 0.997 0.0
255555765 494 endo-1,4-beta-glucanase, putative [Ricin 0.856 0.674 0.843 1e-163
224057986 494 predicted protein [Populus trichocarpa] 0.856 0.674 0.834 1e-160
1125032 494 cellulase precursor [Populus alba] 0.856 0.674 0.825 1e-158
429326590 494 korrigan [Populus tomentosa] 0.856 0.674 0.822 1e-158
13383303 494 endo-1,4-beta glucanase [Populus alba] 0.856 0.674 0.822 1e-158
347466579 494 endo-1,4-beta-glucanase [Populus trichoc 0.856 0.674 0.819 1e-156
297742445419 unnamed protein product [Vitis vinifera] 0.856 0.794 0.846 1e-156
429326592 494 korrigan [Populus tomentosa] 0.856 0.674 0.816 1e-156
1657374 497 endo-beta-1,4-glucanase [Prunus persica] 0.840 0.657 0.868 1e-155
>gi|2290681|gb|AAB65155.1| acidic cellulase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/341 (99%), Positives = 341/341 (100%)

Query: 1   MVLSILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRL 60
           MVLSILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRL
Sbjct: 1   MVLSILRKMDPVTKFSLTLQILGLTLCALSLLCSAFTFQDYSDALGKSILFFEGQRSGRL 60

Query: 61  PPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ 120
           PPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ
Sbjct: 61  PPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSSMQ 120

Query: 121 NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQ 180
           NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQ
Sbjct: 121 NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQ 180

Query: 181 NPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCP 240
           NPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCP
Sbjct: 181 NPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCP 240

Query: 241 FYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVL 300
           +YCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVL
Sbjct: 241 YYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTKVL 300

Query: 301 LSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAG 341
           LSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAG
Sbjct: 301 LSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAG 341

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255555765|ref|XP_002518918.1| endo-1,4-beta-glucanase, putative [Ricinus communis] gi|223541905|gb|EEF43451.1| endo-1,4-beta-glucanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224057986|ref|XP_002299423.1| predicted protein [Populus trichocarpa] gi|222846681|gb|EEE84228.1| predicted protein [Populus trichocarpa] gi|347466577|gb|AEO97201.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|347466631|gb|AEO97228.1| endo-1,4-beta-glucanase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1125032|dbj|BAA06877.1| cellulase precursor [Populus alba] Back     alignment and taxonomy information
>gi|429326590|gb|AFZ78635.1| korrigan [Populus tomentosa] Back     alignment and taxonomy information
>gi|13383303|dbj|BAB39482.1| endo-1,4-beta glucanase [Populus alba] Back     alignment and taxonomy information
>gi|347466579|gb|AEO97202.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|347466633|gb|AEO97229.1| endo-1,4-beta-glucanase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297742445|emb|CBI34594.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|429326592|gb|AFZ78636.1| korrigan [Populus tomentosa] Back     alignment and taxonomy information
>gi|1657374|emb|CAA65597.1| endo-beta-1,4-glucanase [Prunus persica] gi|1657380|emb|CAA65600.1| endo-beta-1,4-glucanase [Prunus persica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2024670 501 CEL2 "cellulase 2" [Arabidopsi 0.768 0.596 0.625 1.8e-103
TAIR|locus:2137824 516 GH9B13 "glycosyl hydrolase 9B1 0.773 0.583 0.622 3.3e-102
TAIR|locus:2017704 484 CEL5 "cellulase 5" [Arabidopsi 0.766 0.615 0.586 2.3e-94
TAIR|locus:2825314 484 CEL3 "cellulase 3" [Arabidopsi 0.766 0.615 0.582 1.9e-92
TAIR|locus:2033600 492 GH9B1 "glycosyl hydrolase 9B1" 0.773 0.611 0.566 2.1e-91
TAIR|locus:2028015 489 GH9B6 "glycosyl hydrolase 9B6" 0.773 0.615 0.572 5.1e-90
TAIR|locus:2120242 497 GH9B18 "glycosyl hydrolase 9B1 0.789 0.617 0.536 1.1e-89
TAIR|locus:2118519 478 GH9B14 "glycosyl hydrolase 9B1 0.750 0.610 0.509 4.2e-79
TAIR|locus:2120232 493 GH9B17 "glycosyl hydrolase 9B1 0.789 0.622 0.472 1.4e-78
TAIR|locus:2059375 525 GH9B8 "glycosyl hydrolase 9B8" 0.776 0.575 0.492 2.7e-77
TAIR|locus:2024670 CEL2 "cellulase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 189/302 (62%), Positives = 228/302 (75%)

Query:    40 DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
             +Y DAL KSILFFEGQRSG+LPPNQ++TWR NSGLSDGS+ +VDLVGGYYDAGDN+KFG 
Sbjct:    43 NYKDALSKSILFFEGQRSGKLPPNQRMTWRSNSGLSDGSALNVDLVGGYYDAGDNMKFGF 102

Query:   100 PMAFTTTLLSWSVIEFGSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDH 159
             PMAFTTT+LSWS+IEFG  M++ L NAK AIRW TD+LLKA T+ P  +YVQVGDPNMDH
Sbjct:   103 PMAFTTTMLSWSLIEFGGLMKSELPNAKDAIRWATDFLLKA-TSHPDTIYVQVGDPNMDH 161

Query:   160 HCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAMKV 219
              CWERPEDMDTPR+V+KV   NPGSD+           S+VF+  DPSYS  LL+ A+ V
Sbjct:   162 ACWERPEDMDTPRSVFKVDKNNPGSDIAGEIAAALAAASIVFRKCDPSYSNHLLQRAITV 221

Query:   220 FDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHIL 279
             F FADKYRG YS  L   VCPFYCSYSGY DELLWGA+WL +A+ N +YL YI++NG IL
Sbjct:   222 FTFADKYRGPYSAGLAPEVCPFYCSYSGYQDELLWGAAWLQKATNNPTYLNYIKANGQIL 281

Query:   280 GAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYT 339
             GA           K  G ++LLSK FL +  +  + YK H+D++ICS++PG+SS  +QYT
Sbjct:   282 GADEFDNMFSWDNKHVGARILLSKEFLIQKVKSLEEYKEHADSFICSVLPGASS--SQYT 339

Query:   340 AG 341
              G
Sbjct:   340 PG 341
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0007389 "pattern specification process" evidence=TAS
GO:0008810 "cellulase activity" evidence=TAS
GO:0009624 "response to nematode" evidence=IEP
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010093 "specification of floral organ identity" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
TAIR|locus:2137824 GH9B13 "glycosyl hydrolase 9B13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017704 CEL5 "cellulase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825314 CEL3 "cellulase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033600 GH9B1 "glycosyl hydrolase 9B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028015 GH9B6 "glycosyl hydrolase 9B6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120242 GH9B18 "glycosyl hydrolase 9B18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118519 GH9B14 "glycosyl hydrolase 9B14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120232 GH9B17 "glycosyl hydrolase 9B17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059375 GH9B8 "glycosyl hydrolase 9B8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P05522GUN1_PERAE3, ., 2, ., 1, ., 40.80180.81740.6437N/Ano
Q6YXT7GUN19_ORYSJ3, ., 2, ., 1, ., 40.71100.78920.5869yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.40.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
PLN02266 510 PLN02266, PLN02266, endoglucanase 1e-178
pfam00759437 pfam00759, Glyco_hydro_9, Glycosyl hydrolase famil 1e-159
PLN02308 492 PLN02308, PLN02308, endoglucanase 1e-157
PLN03009 495 PLN03009, PLN03009, cellulase 1e-145
PLN02175 484 PLN02175, PLN02175, endoglucanase 1e-138
PLN02613 498 PLN02613, PLN02613, endoglucanase 1e-135
PLN02171 629 PLN02171, PLN02171, endoglucanase 1e-126
PLN02909 486 PLN02909, PLN02909, Endoglucanase 1e-120
PLN00119 489 PLN00119, PLN00119, endoglucanase 1e-117
PLN02420 525 PLN02420, PLN02420, endoglucanase 1e-116
PLN02340 614 PLN02340, PLN02340, endoglucanase 1e-113
PLN02345 469 PLN02345, PLN02345, endoglucanase 1e-112
>gnl|CDD|215150 PLN02266, PLN02266, endoglucanase Back     alignment and domain information 
 Score =  505 bits (1303), Expect = e-178
 Identities = 216/343 (62%), Positives = 257/343 (74%), Gaps = 17/343 (4%)

Query: 15  FSLTLQILGLTLCALSLLCSAFTF----------------QDYSDALGKSILFFEGQRSG 58
            S TL  L + L    LLC+ F+                  +Y DAL KSILFFEGQRSG
Sbjct: 5   LSSTLLRLFIFLAFSLLLCNGFSSSSNNPFHHRHHPRLASHNYRDALTKSILFFEGQRSG 64

Query: 59  RLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGSS 118
           +LP +Q++TWR +SGLSDGS+ HVDLVGGYYDAGDNVKFG PMAFTTT+LSWSVIEFG  
Sbjct: 65  KLPSSQRMTWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGL 124

Query: 119 MQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVS 178
           M++ L+NAK AIRW TDYLLKA TA P  +YVQVGD N DH CWERPEDMDTPR+V+KV 
Sbjct: 125 MKSELQNAKDAIRWATDYLLKA-TAHPDTIYVQVGDANKDHACWERPEDMDTPRSVFKVD 183

Query: 179 TQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVV 238
              PGSDVAAETAAALAAAS+VF+ SDP+YS  L++ A++VF FADKYRG+YS+ L   V
Sbjct: 184 KNTPGSDVAAETAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFADKYRGAYSNGLKPDV 243

Query: 239 CPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGHILGADDDDYSFSWDDKRAGTK 298
           CPFYCSYSGY DELLWGA+WLH+A++N +YL YIQ NG ILGAD+ D +F WD+K  G +
Sbjct: 244 CPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVNGQILGADEFDNTFGWDNKHVGAR 303

Query: 299 VLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAG 341
           +LLSK FL +  Q    YK H+DN+ICS+IPG+     QYT G
Sbjct: 304 ILLSKAFLVQKVQSLHEYKGHADNFICSVIPGAPFSSTQYTPG 346

Length = 510
>gnl|CDD|216104 pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9 Back     alignment and domain information
>gnl|CDD|177943 PLN02308, PLN02308, endoglucanase Back     alignment and domain information
>gnl|CDD|166650 PLN03009, PLN03009, cellulase Back     alignment and domain information
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase Back     alignment and domain information
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase Back     alignment and domain information
>gnl|CDD|215115 PLN02171, PLN02171, endoglucanase Back     alignment and domain information
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase Back     alignment and domain information
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase Back     alignment and domain information
>gnl|CDD|178040 PLN02420, PLN02420, endoglucanase Back     alignment and domain information
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase Back     alignment and domain information
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
PLN02175 484 endoglucanase 100.0
PLN02266 510 endoglucanase 100.0
PLN02340 614 endoglucanase 100.0
PLN02308492 endoglucanase 100.0
PLN00119 489 endoglucanase 100.0
PLN02909486 Endoglucanase 100.0
PLN02420 525 endoglucanase 100.0
PLN02613 498 endoglucanase 100.0
PLN02171 629 endoglucanase 100.0
PLN03009495 cellulase 100.0
PLN02345 469 endoglucanase 100.0
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 100.0
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 97.35
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.27
COG1331667 Highly conserved protein containing a thioredoxin 96.11
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 95.33
KOG2787403 consensus Lanthionine synthetase C-like protein 1 94.82
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 94.06
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 92.9
COG2942388 N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra 83.72
>PLN02175 endoglucanase Back     alignment and domain information 
Probab=100.00  E-value=9e-96  Score=749.04  Aligned_cols=346  Identities=57%  Similarity=0.961  Sum_probs=315.8

Q ss_pred             CChhhHHHHHHHHHHhHHHhcCCCCCCCCCCCccCCCCCCCCCCcccccccceeccCCCcccccchhHHHHHHHHHHHHh
Q 016484           36 FTFQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEF  115 (389)
Q Consensus        36 ~~~~~Y~~~l~~sl~Fy~~QRsG~lp~~~~v~Wr~~s~l~Dg~~~~~DlsGGWyDAGD~~Ky~~~~a~s~~~L~w~~~~f  115 (389)
                      ..+++|+++|++||+||++||||+||+++|++||++||+.||.+.++||+|||||||||+||++|+|+|+++|+|+++||
T Consensus        20 ~~~~~Y~~aL~kSl~Fy~aQrsG~Lp~~~r~~WRgds~l~Dg~~~~~DlsGGwyDAGD~vKf~~p~A~t~t~LaW~~~e~   99 (484)
T PLN02175         20 DANPNYKEALSKSLLFFQGQRSGPLPRGQQLSWRASSGLSDGSAAHVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSALEY   99 (484)
T ss_pred             cccccHHHHHHHHHHHHHHhhCcCCCCcCCCCCccccccccCccCccCCCCCeeeCCCCCeeCchHHHHHHHHHhhhhhc
Confidence            36689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHcccCCCCCeeEEeCCCCCCCCCCCCCCCCCCCcceeecCCCCCChHHHHHHHHHHH
Q 016484          116 GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALA  195 (389)
Q Consensus       116 ~~~~~~~~~d~Lde~kwg~D~llk~q~~~~g~~y~qVGd~~~dh~~W~~Pe~~~~~R~~~~v~~~~pgs~~~~~~AAAlA  195 (389)
                      ++.+.++++++|+||||++|||||||++++|+||+|||++..||.+|++||+++++||+|+|+.++|||++++++|||||
T Consensus       100 ~~~~~~~~~~~l~~lkw~~Dyllk~~~~~~g~vy~qVG~~~~Dh~~W~~PE~~~~~R~~~~is~~~PGSd~aae~AAALA  179 (484)
T PLN02175        100 GKRMGPELENARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKCWERPEDMDTPRTVYSVSPSNPGSDVAAETAAALA  179 (484)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCcCCCCCeEEEEeCCCCCCcccCCChhHccCccceEecCCCCCccHHHHHHHHHHH
Confidence            99988899999999999999999996678999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCCccchHHHHHHHHHHHHcCChhHHHHHHHc
Q 016484          196 AASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSN  275 (389)
Q Consensus       196 ~As~vf~~~D~~yA~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~~Y~s~s~~~De~~wAAa~Ly~aTgd~~Yl~~a~~~  275 (389)
                      +||||||++||+||++||+|||++|+||+++|+.|.+++....+++|+|.++|+||++|||+|||+||||++|+++++..
T Consensus       180 aaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~~~~~  259 (484)
T PLN02175        180 AASMVFRKVDSKYSRLLLATAKKVMQFAIQYRGAYSDSLSSSVCPFYCSYSGYKDELMWGASWLLRATNDPYYANFIKSL  259 (484)
T ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCCcccCccccccCccccCCCccHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999876444457899987889999999999999999999999988764


Q ss_pred             cccCCCCCCCCcccchhhhHHHHHHhcccccccchHHHHHHHHHHHHHHHhhCCCCCCCccccCCchhh-------HH-H
Q 016484          276 GHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVN-------EP-L  347 (389)
Q Consensus       276 ~~~~~~~~~~~~~~Wd~~~~~~~~lla~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~TpgGl~-------lr-a  347 (389)
                          +.......|+||+|.+++++||++..+.+.....+.|++.+++|+|.+++++++..+++|||||+       +| +
T Consensus       260 ----~~~~~~~~~~Wd~k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~TpgGL~~~~~wg~lrya  335 (484)
T PLN02175        260 ----GGGDQPDIFSWDNKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILPDSPSSSTQYTQGGLMYKLPQSNLQYV  335 (484)
T ss_pred             ----CCCCCCCccCCcCHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccCCCCCccccccCCceEEECCCCcHHHH
Confidence                22223457999999999999999843333344567899999999999999876678999999999       89 9


Q ss_pred             HHHHHHHHHhchhhhhhcCCeeEeecCCCCCCHHHHHHhhc
Q 016484          348 VALFFTLRLFSSRKLASKGSVYNTIFLQGGFSTKQVRAIFN  388 (389)
Q Consensus       348 an~Afl~l~~a~~~~~~a~~~~~cilg~~~~~~~~~~~~a~  388 (389)
                      +|+|||+++|+ ||+..++++++|  |+..++|+++++||+
T Consensus       336 ~~~afla~~ya-~~l~~~~~~~~c--g~~~~~~~~~~~fA~  373 (484)
T PLN02175        336 TSITFLLTTYA-KYMKSTKHTFNC--GNSVIVPNALISLSK  373 (484)
T ss_pred             HHHHHHHHHHH-HHHhhccccccc--CCCccCHHHHHHHHH
Confidence            99999999999 999877777777  777777777777775

>PLN02266 endoglucanase Back     alignment and domain information
>PLN02340 endoglucanase Back     alignment and domain information
>PLN02308 endoglucanase Back     alignment and domain information
>PLN00119 endoglucanase Back     alignment and domain information
>PLN02909 Endoglucanase Back     alignment and domain information
>PLN02420 endoglucanase Back     alignment and domain information
>PLN02613 endoglucanase Back     alignment and domain information
>PLN02171 endoglucanase Back     alignment and domain information
>PLN03009 cellulase Back     alignment and domain information
>PLN02345 endoglucanase Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1ks8_A433 The Structure Of Endoglucanase From Termite, Nasuti 6e-58
1js4_A 605 EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Le 8e-57
2xfg_A466 Reassembly And Co-Crystallization Of A Family 9 Pro 4e-44
1k72_A 614 The X-ray Crystal Structure Of Cel9g Complexed With 1e-41
1ga2_A 614 The Crystal Structure Of Endoglucanase 9g From Clos 1e-41
4dod_A475 The Structure Of Cbescii Cela Gh9 Module Length = 4 6e-41
1ia6_A441 Crystal Structure Of The Cellulase Cel9m Of C. Cell 1e-31
2yik_A 611 Catalytic Domain Of Clostridium Thermocellum Celt L 9e-26
3ez8_A537 Crystal Structure Of Endoglucanase Cel9a From The T 5e-05
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. Length = 433 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (562), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 168/291 (57%), Gaps = 11/291 (3%)
Query: 40  DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
           DY   L  S+LF+E QRSGRLP +Q++TWR +S L+D      DL GGY+DAGD VKFG 
Sbjct: 4   DYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGF 63
Query: 100 PMAFTTTLLSWSVIEF--GSSMQNHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
           PMA+T T+L+W +I+F  G S    L++ + A++W TDY +KA T +    Y QVG  + 
Sbjct: 64  PMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT-SQNEFYGQVGQGDA 122
Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVXXXXXXXXXXXSVVFKDSDPSYSTKLLKTAM 217
           DH  W RPEDM   R  YK+ T  PGSD+           S+VF++ D +YS  LL  A 
Sbjct: 123 DHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHAR 182
Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
           ++FDFA+ YRG YSDS+      FY S + Y DEL+W A+WL+RA+ +++YL   +S   
Sbjct: 183 QLFDFANNYRGKYSDSITDARN-FYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESLYD 240
Query: 278 ILGAXXXXXXXXXXXKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLI 328
             G            K +G +VLL+K          Q YK    +Y+  LI
Sbjct: 241 EFGLQNWGGGLNWDSKVSGVQVLLAK------LTNKQAYKDTVQSYVNYLI 285
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Length = 605 Back     alignment and structure
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules Length = 466 Back     alignment and structure
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With Cellotriose Length = 614 Back     alignment and structure
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium Cellulolyticum Complexed With Cellobiose Length = 614 Back     alignment and structure
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module Length = 475 Back     alignment and structure
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum Length = 441 Back     alignment and structure
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt Length = 611 Back     alignment and structure
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The Thermoacidophilic Alicyclobacillus Acidocaldarius Length = 537 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 1e-118
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 1e-118
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 1e-117
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 1e-113
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 1e-108
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 1e-106
2yik_A 611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 1e-105
1clc_A 639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 1e-101
1ut9_A 609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 3e-86
3h7l_A 586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 8e-60
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Length = 605 Back     alignment and structure
 Score =  354 bits (909), Expect = e-118
 Identities = 134/310 (43%), Positives = 188/310 (60%), Gaps = 17/310 (5%)

Query: 40  DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
           +Y++AL KS+ F+E QRSG+LP N +++WRG+SGL+DG+   +DL GG+YDAGD+VKFG 
Sbjct: 5   NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64

Query: 100 PMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
           PMAFT T+L+W  IE          +   K  +RW  DY +KA  + P  LYVQVGD + 
Sbjct: 65  PMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPS-PNVLYVQVGDGDA 123

Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAM 217
           DH  W   E M   R  +KV    PGSDVAAETAAA+AA+S+VF D DP+Y+  L++ A 
Sbjct: 124 DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAK 183

Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
           +++ FAD YRG YSD        FY S+SGY DEL+WGA WL++A+ + SYLA  +    
Sbjct: 184 QLYTFADTYRGVYSDC--VPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYD 241

Query: 278 ILGADDD------DYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGS 331
            L  +         ++ +WDDK  GT VLL+K   ++       Y   ++ ++     G 
Sbjct: 242 FLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGKQK------YIDDANRWLDYWTVGV 295

Query: 332 SSFQAQYTAG 341
           +  +  Y+ G
Sbjct: 296 NGQRVPYSPG 305
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Length = 433 Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Length = 466 Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Length = 614 Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Length = 441 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Length = 537 Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Length = 611 Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Length = 639 Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Length = 609 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Length = 586 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 100.0
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 100.0
2yik_A 611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 100.0
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 100.0
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 100.0
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 100.0
1clc_A 639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 100.0
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 100.0
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 100.0
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 100.0
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.45
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.41
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 96.34
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 95.54
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 95.15
1fp3_A 402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 95.0
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 93.69
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 93.1
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 91.5
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 90.21
3k7x_A 349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 88.91
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 86.42
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 85.99
3pmm_A 382 Putative cytoplasmic protein; structural genomics, 85.72
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 80.97
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
Probab=100.00  E-value=8.9e-89  Score=700.55  Aligned_cols=338  Identities=36%  Similarity=0.597  Sum_probs=300.7

Q ss_pred             cCChhhHHHHHHHHHHhHHHhcCCCC-CCCCCCCccCCCCCCCCCCcccccccceeccCCCcccccchhHHHHHHHHHHH
Q 016484           35 AFTFQDYSDALGKSILFFEGQRSGRL-PPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVI  113 (389)
Q Consensus        35 ~~~~~~Y~~~l~~sl~Fy~~QRsG~l-p~~~~v~Wr~~s~l~Dg~~~~~DlsGGWyDAGD~~Ky~~~~a~s~~~L~w~~~  113 (389)
                      +.++++|.++|++||+||++||||++ |+++|++||++||++||++.++||+|||||||||+||++|+|+|+++|+|+++
T Consensus        20 ~~~~~~Y~~~l~~sl~ff~~QRsG~~vp~~~~~~Wr~~shl~Dg~~~~~DlsGGwyDAGD~~Ky~~~~a~t~~~L~w~~~   99 (466)
T 2xfg_A           20 ATGAFNYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFNLPMSYSAAMLGWAVY   99 (466)
T ss_dssp             -CCSSCHHHHHHHHHHHHHHTBCBCCCTTTCSBSSCCCBCTTTTGGGTSCCCCSBCCSSSCCEEHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccccccccccCCCCceeCCCCCeeccccHHHHHHHHHHHH
Confidence            45679999999999999999999988 99999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhhh--hhHHHHHHHHHHHHHHHHHcccCCCCCeeEEeCCCCCCCCCCCCCCCCCCCcceeecCCCCCChHHHHHHH
Q 016484          114 EFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETA  191 (389)
Q Consensus       114 ~f~~~~~--~~~~d~Lde~kwg~D~llk~q~~~~g~~y~qVGd~~~dh~~W~~Pe~~~~~R~~~~v~~~~pgs~~~~~~A  191 (389)
                      ||++.|+  |++||+|||||||+|||||| |+++|.||+||||+..||.+|++||+++.+||+|.|+.++|||++++++|
T Consensus       100 e~~~~~~~~~~~~d~ldeikwg~D~llk~-~~~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R~~y~i~~~~pgsd~a~e~A  178 (466)
T 2xfg_A          100 EYEDAFKQSGQYNHILNNIKWACDYFIKC-HPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETS  178 (466)
T ss_dssp             HCHHHHHHTTCHHHHHHHHHHHHHHHHHT-CSBTTEEEEEESCHHHHHTCCSCGGGCCSCCCEEEEESSSCCHHHHHHHH
T ss_pred             HhHHHHhcCCCchHHHHHHHHHHHHHHHh-ccCCCcEEEEeCCCCccccccCCcccCCCCCceeEecCCCCccHHHHHHH
Confidence            9999997  89999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCCccchHHHHHHHHHHHHcCChhHHHH
Q 016484          192 AALAAASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAY  271 (389)
Q Consensus       192 AAlA~As~vf~~~D~~yA~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~~Y~s~s~~~De~~wAAa~Ly~aTgd~~Yl~~  271 (389)
                      ||||+||||||++||+||++||++||++|+||++||+.|..   +..+++|+|++++.||++|||+|||+||||++|+++
T Consensus       179 AAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~---~~~~~~Y~s~s~~~DEl~WAAawLy~ATgd~~Yl~~  255 (466)
T 2xfg_A          179 AALAIASIIFKKVDGEYSKECLKHAKELFEFADTTKSDDGY---TAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDK  255 (466)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHCCCTTC---CTTTTTSCCSSCSHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhcCCcCCC---CccccccCCCCCCchHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999843   346799999899999999999999999999999999


Q ss_pred             HHHccccCCCC------CCCCcccchhhhHHHHHHhcccccccchHHHHHHHHHHHHHHHhhCCCCCCCccccCCchhh-
Q 016484          272 IQSNGHILGAD------DDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVN-  344 (389)
Q Consensus       272 a~~~~~~~~~~------~~~~~~~Wd~~~~~~~~lla~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~TpgGl~-  344 (389)
                      +++++..++..      ...+.|+||+|..++++||++.  ++..   ..|++.++++++.++.+.++.++++||+||+ 
T Consensus       256 a~~~~~~~~~~~~~~~~~~~~~~~Wd~~~~g~~~lla~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~tp~Gl~~  330 (466)
T 2xfg_A          256 AESYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARI--KNDN---GKYKEAIERHLDWWTTGYNGERITYTPKGLAW  330 (466)
T ss_dssp             HHHTTTTSCBSTTSSSBCCSSCCBTTBCHHHHHHHHHHH--HCSS---CHHHHHHHHHHHHHTTCBTTBCCCBCTTSCBC
T ss_pred             HHHHHHHhccccccccccccCcCCcchhHHHHHHHHHHh--cCCc---HHHHHHHHHHHHHHHhccCCCccccCCccccc
Confidence            99986654421      2345799999999999999872  2322   1345555555555554555578999999986 


Q ss_pred             ------HH-HHHHHHHHHHhchhh-----------hhhcCCeeEeecCCCCCCHHHHH
Q 016484          345 ------EP-LVALFFTLRLFSSRK-----------LASKGSVYNTIFLQGGFSTKQVR  384 (389)
Q Consensus       345 ------lr-aan~Afl~l~~a~~~-----------~~~a~~~~~cilg~~~~~~~~~~  384 (389)
                            +| ++|.|||+++|+ ++           .+.+.+||+||||+|  ..+-+.
T Consensus       331 ~~~Wgs~~~~~n~afl~~~y~-~~~~~~~~~~~~y~~~A~~qidYiLG~N--~~Syvv  385 (466)
T 2xfg_A          331 LDQWGSLRYATTTAFLACVYS-DWENGDKEKAKTYLEFARSQADYALGST--GRSFVV  385 (466)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTTT--SSCCBT
T ss_pred             cCCCCchHHHHHHHHHHHHHH-HhcCCCcccHHHHHHHHHHhHHhhcCCC--CcceEe
Confidence                  88 999999999998 76           456889999999999  444433
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d1tf4a1 460 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E 1e-119
d1ks8a_433 a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasu 1e-113
d1g87a1 454 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E 1e-112
d1ia6a_431 a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clos 1e-101
d1clca1441 a.102.1.2 (A:135-575) CelD cellulase, C-terminal d 3e-80
d1ut9a1 511 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobios 4e-76
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Length = 460 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

 Score =  351 bits (903), Expect = e-119
 Identities = 135/310 (43%), Positives = 189/310 (60%), Gaps = 17/310 (5%)

Query: 40  DYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGL 99
           +Y++AL KS+ F+E QRSG+LP N +++WRG+SGL+DG+   +DL GG+YDAGD+VKFG 
Sbjct: 5   NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64

Query: 100 PMAFTTTLLSWSVIEFGSSMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNM 157
           PMAFT T+L+W  IE          +   K  +RW  DY +KA   +P  LYVQVGD + 
Sbjct: 65  PMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKA-HPSPNVLYVQVGDGDA 123

Query: 158 DHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASVVFKDSDPSYSTKLLKTAM 217
           DH  W   E M   R  +KV    PGSDVAAETAAA+AA+S+VF D DP+Y+  L++ A 
Sbjct: 124 DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAK 183

Query: 218 KVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSNGH 277
           +++ FAD YRG YSD + +    FY S+SGY DEL+WGA WL++A+ + SYLA  +    
Sbjct: 184 QLYTFADTYRGVYSDCVPA--GAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYD 241

Query: 278 ILGADDDD------YSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGS 331
            L  +         ++ +WDDK  GT VLL+K          Q Y   ++ ++     G 
Sbjct: 242 FLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAK------ETGKQKYIDDANRWLDYWTVGV 295

Query: 332 SSFQAQYTAG 341
           +  +  Y+ G
Sbjct: 296 NGQRVPYSPG 305
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Length = 433 Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Length = 454 Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Length = 431 Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Length = 441 Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Length = 511 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 100.0
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 100.0
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 100.0
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 100.0
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 93.05
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 92.18
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 91.97
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 88.7
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 87.14
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo-b-1,4-glucanase
species: Termite (Nasutitermes takasagoensis) [TaxId: 62960]

Probab=100.00  E-value=2.3e-79  Score=623.82  Aligned_cols=328  Identities=42%  Similarity=0.722  Sum_probs=294.9

Q ss_pred             hhhHHHHHHHHHHhHHHhcCCCCCCCCCCCccCCCCCCCCCCcccccccceeccCCCcccccchhHHHHHHHHHHHHhhh
Q 016484           38 FQDYSDALGKSILFFEGQRSGRLPPNQQLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLSWSVIEFGS  117 (389)
Q Consensus        38 ~~~Y~~~l~~sl~Fy~~QRsG~lp~~~~v~Wr~~s~l~Dg~~~~~DlsGGWyDAGD~~Ky~~~~a~s~~~L~w~~~~f~~  117 (389)
                      .++|+++|++||+||++||||++|..++++||++||++||++.++||+|||||||||+||++|+++++++|+|++++|++
T Consensus         2 ~~~Y~~~l~~sl~ff~~QRsG~lp~~~~~~w~~~s~~~dg~~~~~DvsGGWyDAGD~~Ky~~~~a~s~~~L~~a~~~~~~   81 (433)
T d1ks8a_           2 AYDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFEA   81 (433)
T ss_dssp             CCCHHHHHHHHHHHHHHTBCBSCCTTCSCTTCCCBCTTCBCTTCCBCCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHHHccCcCCCcccCCCCCCcccCCCccccCCCCCCCceeCCccceechhhHHHHHHHHHHHHHhHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh--hhHHHHHHHHHHHHHHHHHcccCCCCCeeEEeCCCCCCCCCCCCCCCCCCCcceeecCCCCCChHHHHHHHHHHH
Q 016484          118 SMQ--NHLENAKAAIRWGTDYLLKASTATPGALYVQVGDPNMDHHCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALA  195 (389)
Q Consensus       118 ~~~--~~~~d~Lde~kwg~D~llk~q~~~~g~~y~qVGd~~~dh~~W~~Pe~~~~~R~~~~v~~~~pgs~~~~~~AAAlA  195 (389)
                      .++  |++||||||||||+|||+|| |+.+|.+|+|||++..||.+|++||+++.+|++|.++.++|+|++++++|||||
T Consensus        82 ~~~s~~~~~dlldE~kwg~D~llkm-q~~~g~~y~~V~~~~~d~~~~~~p~~~~~~r~~~~~~~~~~~t~~~~~~aAalA  160 (433)
T d1ks8a_          82 GYSSAGALDDGRKAVKWATDYFIKA-HTSQNEFYGQVGQGDADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALA  160 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHH-CCBTTBEEEEESCHHHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHH
T ss_pred             hhccCCchHHHHHHHHHHHHHHHHc-ccCCCCEEEEEecCCccCCCCCCccccCCCCceeeecCCCcchHHHHHHHHHHH
Confidence            997  89999999999999999999 888999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCCccchHHHHHHHHHHHHcCChhHHHHHHHc
Q 016484          196 AASVVFKDSDPSYSTKLLKTAMKVFDFADKYRGSYSDSLNSVVCPFYCSYSGYLDELLWGASWLHRASQNSSYLAYIQSN  275 (389)
Q Consensus       196 ~As~vf~~~D~~yA~~~L~~A~~~~~~a~~~~~~y~~~~~~~~~~~Y~s~s~~~De~~wAAa~Ly~aTgd~~Yl~~a~~~  275 (389)
                      +|||||+++||+||++||++||++|+|+++||+.|.++ .+..+++|++ +++.||++|||+|||++|||++|+++++++
T Consensus       161 ~as~v~~~~d~~~A~~~l~~A~~~~~~a~~~~~~~~~~-~~~~~~~Y~~-~~~~De~~wAAaeLy~aTg~~~Yl~~~~~~  238 (433)
T d1ks8a_         161 AASIVFRNVDGTYSNNLLTHARQLFDFANNYRGKYSDS-ITDARNFYAS-ADYRDELVWAAAWLYRATNDNTYLNTAESL  238 (433)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHHHHHHHHHHHSCCCHHHH-SGGGGGTSCC-CCTHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCccc-ccchhHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999999999999999999998665 3557889999 999999999999999999999999999987


Q ss_pred             cccCCCCCCCCcccchhhhHHHHHHhcccccccchHHHHHHHHHHHHHHHhhCCCCCCCccccCCchhh-------HH-H
Q 016484          276 GHILGADDDDYSFSWDDKRAGTKVLLSKGFLEKNTQEFQLYKAHSDNYICSLIPGSSSFQAQYTAGLVN-------EP-L  347 (389)
Q Consensus       276 ~~~~~~~~~~~~~~Wd~~~~~~~~lla~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~TpgGl~-------lr-a  347 (389)
                      ...+........++|+++..++.++|++  .+.+    +.+++.++++++.++.     ....||.|+.       ++ +
T Consensus       239 ~~~~~~~~~~~~~~w~~~~~~~~~~la~--~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~WGsn~~~  307 (433)
T d1ks8a_         239 YDEFGLQNWGGGLNWDSKVSGVQVLLAK--LTNK----QAYKDTVQSYVNYLIN-----NQQKTPKGLLYIDMWGTLRHA  307 (433)
T ss_dssp             HHHTTGGGSCCCCCSSCCHHHHHHHHHH--HHCC----HHHHHHHHHHHHHHHH-----TSCBCTTSCBCCCSTTHHHHH
T ss_pred             HHhcCcccCCccccchhHHHHHHHHHhh--ccCc----hhHHHHHHHHHHHHHh-----hccCCCCCceecCCcchhHHH
Confidence            6544433345678999999999999986  2232    4566666677766653     3456777776       67 9


Q ss_pred             HHHHHHHHHhch------hhhhhcCCeeEeecCCCCCC
Q 016484          348 VALFFTLRLFSS------RKLASKGSVYNTIFLQGGFS  379 (389)
Q Consensus       348 an~Afl~l~~a~------~~~~~a~~~~~cilg~~~~~  379 (389)
                      +|.+|++++++.      +|++.+.+||+||||+||++
T Consensus       308 ~n~a~~~~~a~~~~~~~~~y~~~A~~qldylLG~Np~s  345 (433)
T d1ks8a_         308 ANAAFIMLEAAELGLSASSYRQFAQTQIDYALGDGGRS  345 (433)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHhHhhccCCCCCc
Confidence            999999999873      45677889999999999865
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure