Citrus Sinensis ID: 016530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MDLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEEEcccEEEEEEEEccEEEEEccEEEEcccEEEEEEEEcccccccccccEEEccccccccccccccHHHHHHHcccccccEEEEEEEcccccccccEEEEcccccccEEEEEEEEEccEEEEEEEEEcEEEEccEEEEEEcccEEEEEEcccccEEccHHHHHHHHHHHccccEEEEcEEEEEEcccccEEEEEEcccccccEEEccEEEEEcccEEEEEcEEEEEEcccEEcccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEcccccccccEEEEEccEEEEEcccccEEEEccccccEEEEEEEEccccccccccEEEccccccccEEEEEccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcEEEEEcEEEEEEEEcccHHHHHccccEEEEcccHHHcHHHcccHHHHHHHcccccccEEEEEEcccccccccEEEEEccccHHHEEEEEEEEEccEEccEEEEEccEEEccEEcccccccEEEEEccccccEEEcHHHHHHHHHHHccEEcccccEEEEHHcccHHHHHHHcccccccccccEEEEEEccccEEEcccEEEEEEccccccccccHcccccEEEEEcccHccccccHHHHHHHHHHHHccEEcccccEEccccHHHHcccEEEEEccEEEEEcHHHHEEEEEEccEEEEEEcEEEccccccccccEEEcHHHHccEEEEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
MDLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLnwcpftwqcACLQIFLLQVFIEATREGSLTFLLARFDGiiglgfreiavgdavpvwdnmveqgLVSEEVFSFwlnrdpdaeeggeivfggvdpkhfkgkhtyvpvtkkgywqfelgdilignqstgvcegGCAAIVDsgtsllagptpvvteinhaiggegvVSAECKLVVSQYGDLIWDLLVsgllpekvCQQIGlcafngaeyvsTGIKTVVEKenvsagdsaVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCdslpnpmgesiidcdriptmpnvsftigdkifnlspEQYILKTGEGIAEVCISgfmafdlppprgplwilgdvfMGVYhtvfdsgklrigfaeaa
Flexible Loop (DISEMBL)
MDLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVfggvdpkhfkGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Low Complexity Region (SEG)
MDLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Disordered region (IsUnstruct)
******LASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGF****
Disordered Region (DISOPRED)
*DLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA*
Disordered Region (DISEMBL)
MDLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Disordered Region (DISPRO)
MDLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLDQFLASSVKTMLKLGMLLSRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
O04057	513	Aspartic proteinase OS=Cu	N/A	no	0.865	0.654	0.693	1e-138
O65390	506	Aspartic proteinase A1 OS	yes	no	0.865	0.664	0.657	1e-136
Q42456	509	Aspartic proteinase oryza	yes	no	0.858	0.654	0.660	1e-135
P42211	496	Aspartic proteinase OS=Or	no	no	0.860	0.673	0.642	1e-134
Q8VYL3	513	Aspartic proteinase A2 OS	no	no	0.863	0.653	0.636	1e-132
P42210	508	Phytepsin OS=Hordeum vulg	N/A	no	0.865	0.661	0.654	1e-128
P40782	473	Cyprosin (Fragment) OS=Cy	N/A	no	0.865	0.710	0.620	1e-127
Q9XEC4	508	Aspartic proteinase A3 OS	no	no	0.865	0.661	0.601	1e-124
Q9XFX4	506	Procardosin-B OS=Cynara c	N/A	no	0.863	0.662	0.588	1e-123
Q9XFX3	504	Procardosin-A OS=Cynara c	N/A	no	0.853	0.656	0.572	1e-109

>sp|O04057|ASPR_CUCPE Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/339 (69%), Positives = 284/339 (83%), Gaps = 3/339 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATRE SLTFL+A+FDG++GLGF+EIAVG+AVPVW NMVEQGLV E VFSFWLNR+
Sbjct: 175 QVFIEATREPSLTFLVAKFDGLLGLGFQEIAVGNAVPVWYNMVEQGLVKEPVFSFWLNRN 234

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            + EEGGEIVFGGVDPKH++GKHTYVPVT+KGYWQF++GD+LI  + TG C+GGC+AI D
Sbjct: 235 VEEEEGGEIVFGGVDPKHYRGKHTYVPVTQKGYWQFDMGDVLIDGEPTGFCDGGCSAIAD 294

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPTPV+T INHAIG +GVVS +CK VV+QYG  I DLL+S   P+K+C QI L
Sbjct: 295 SGTSLLAGPTPVITMINHAIGAKGVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINL 354

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGDS---AVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C F+G   VS GI++VV++    + DS    +CS CEM VVW+QNQL+Q QTKE++++YI
Sbjct: 355 CTFDGTRGVSMGIESVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYI 414

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           NELCD +P+PMG+S +DC ++ +MP VSFTIG KIF+L+PE+YILK GEG    CISGF 
Sbjct: 415 NELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFT 474

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           AFD+PPPRGPLWILGDVFMG YHTVFD GKLR+G AEAA
Sbjct: 475 AFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513

Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles.
Cucurbita pepo (taxid: 3663)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|O65390|APA1_ARATH Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1

 Score =  485 bits (1249), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 223/339 (65%), Positives = 274/339 (80%), Gaps = 3/339 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT+E  +TF++A+FDGI+GLGF+EI+VG A PVW NM++QGL+ E VFSFWLNR+
Sbjct: 168 QEFIEATKEPGITFVVAKFDGILGLGFQEISVGKAAPVWYNMLKQGLIKEPVFSFWLNRN 227

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D EEGGE+VFGGVDP HFKGKHTYVPVT+KGYWQF++GD+LIG   TG CE GC+AI D
Sbjct: 228 ADEEEGGELVFGGVDPNHFKGKHTYVPVTQKGYWQFDMGDVLIGGAPTGFCESGCSAIAD 287

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT ++T INHAIG  GVVS +CK VV QYG  I DLL+S   P+K+C QIGL
Sbjct: 288 SGTSLLAGPTTIITMINHAIGAAGVVSQQCKTVVDQYGQTILDLLLSETQPKKICSQIGL 347

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGD---SAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C F+G   VS GI++VV+KEN    +    A CSACEMAVVW+Q+QL+Q  T+E++L+Y+
Sbjct: 348 CTFDGTRGVSMGIESVVDKENAKLSNGVGDAACSACEMAVVWIQSQLRQNMTQERILNYV 407

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           NELC+ LP+PMGES +DC ++ TMP VS TIG K+F+L+PE+Y+LK GEG    CISGF+
Sbjct: 408 NELCERLPSPMGESAVDCAQLSTMPTVSLTIGGKVFDLAPEEYVLKVGEGPVAQCISGFI 467

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D+ PPRGPLWILGDVFMG YHTVFD G  ++GFAEAA
Sbjct: 468 ALDVAPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEAA 506

Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles (By similarity). Possesses aspartic protease activity in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2

 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/342 (66%), Positives = 272/342 (79%), Gaps = 9/342 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT+E  LTF++A+FDGI+GLGF+EI+VGDAVPVW  MVEQGLVSE VFSFW NR 
Sbjct: 171 QEFIEATKEPGLTFMVAKFDGILGLGFQEISVGDAVPVWYKMVEQGLVSEPVFSFWFNRH 230

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D  EGGEIVFGG+DP H+KG HTYVPV++KGYWQFE+GD+LIG ++TG C  GC+AI D
Sbjct: 231 SDEGEGGEIVFGGMDPSHYKGNHTYVPVSQKGYWQFEMGDVLIGGKTTGFCASGCSAIAD 290

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT ++TEIN  IG  GVVS ECK VVSQYG  I DLL++   P K+C Q+GL
Sbjct: 291 SGTSLLAGPTAIITEINEKIGATGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGL 350

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGDS------AVCSACEMAVVWVQNQLKQKQTKEKVL 286
           C F+G   VS GIK+VV+ E   AG+S       +C+ACEMAVVW+QNQL Q +T++ +L
Sbjct: 351 CTFDGKHGVSAGIKSVVDDE---AGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLIL 407

Query: 287 SYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCIS 346
           +YIN+LCD LP+PMGES +DC  + +MP +SFTIG K F L PE+YILK GEG A  CIS
Sbjct: 408 NYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCIS 467

Query: 347 GFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           GF A D+PPPRGPLWILGDVFMG YHTVFD GK+R+GFA++A
Sbjct: 468 GFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P42211|ASPRX_ORYSJ Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2

 Score =  479 bits (1232), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 216/336 (64%), Positives = 276/336 (82%), Gaps = 2/336 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEATRE S+TF++ +FDGI+GLG+ EI+VG A P+W +M EQ L++++VFSFWLNRD
Sbjct: 163 QKFIEATRETSVTFIIGKFDGILGLGYPEISVGKAPPIWQSMQEQELLADDVFSFWLNRD 222

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           PDA  GGE+VFGG+DPKH+KG HTYVPV++KGYWQF +GD+LI   STG C  GCAAIVD
Sbjct: 223 PDASSGGELVFGGMDPKHYKGDHTYVPVSRKGYWQFNMGDLLIDGHSTGFCAKGCAAIVD 282

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT +V ++NHAIG EG++S ECK VVS+YG++I +LL++   P+KVC Q+GL
Sbjct: 283 SGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGL 342

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL 292
           C F+G   VS GI++VV+KEN+  G  A+CS CEMAVVW++NQL++ +TKE +L+Y N+L
Sbjct: 343 CMFDGKRSVSNGIESVVDKENL--GSDAMCSVCEMAVVWIENQLRENKTKELILNYANQL 400

Query: 293 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFD 352
           C+ LP+P GES + C +I  MPN++FTI +K F L+PEQYI+K  +G   VCISGFMAFD
Sbjct: 401 CERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFD 460

Query: 353 LPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           +PPPRGPLWILGDVFMG YHTVFD GK RIGFA++A
Sbjct: 461 IPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8VYL3|APA2_ARATH Aspartic proteinase A2 OS=Arabidopsis thaliana GN=APA2 PE=1 SV=1

 Score =  471 bits (1211), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 215/338 (63%), Positives = 270/338 (79%), Gaps = 3/338 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIE T E  LTFL+A+FDG++GLGF+EIAVG+A PVW NM++QGL+   VFSFWLNRD
Sbjct: 175 QEFIETTSEPGLTFLVAKFDGLLGLGFQEIAVGNATPVWYNMLKQGLIKRPVFSFWLNRD 234

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P +EEGGEIVFGGVDPKHF+G+HT+VPVT++GYWQF++G++LI  +STG C  GC+AI D
Sbjct: 235 PKSEEGGEIVFGGVDPKHFRGEHTFVPVTQRGYWQFDMGEVLIAGESTGYCGSGCSAIAD 294

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT VV  IN AIG  GVVS +CK VV QYG  I DLL++   P+K+C QIGL
Sbjct: 295 SGTSLLAGPTAVVAMINKAIGASGVVSQQCKTVVDQYGQTILDLLLAETQPKKICSQIGL 354

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGD---SAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           CA++G   VS GI++VV+KEN  +      A C ACEMAVVW+Q+QL+Q  T+E++++YI
Sbjct: 355 CAYDGTHGVSMGIESVVDKENTRSSSGLRDAGCPACEMAVVWIQSQLRQNMTQERIVNYI 414

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           NE+C+ +P+P GES +DC ++  MP VSFTIG K+F+L+PE+Y+LK GEG    CISGF 
Sbjct: 415 NEICERMPSPNGESAVDCSQLSKMPTVSFTIGGKVFDLAPEEYVLKIGEGPVAQCISGFT 474

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           A D+PPPRGPLWILGDVFMG YHTVFD G  ++GFAEA
Sbjct: 475 ALDIPPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEA 512

Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P42210|ASPR_HORVU Phytepsin OS=Hordeum vulgare PE=1 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/339 (65%), Positives = 272/339 (80%), Gaps = 3/339 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT+E  +TFL+A+FDGI+GLGF+EI+VG AVPVW  M+EQGLVS+ VFSFWLNR 
Sbjct: 170 QEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRH 229

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D  EGGEI+FGG+DPKH+ G+HTYVPVT+KGYWQF++GD+L+G +STG C GGCAAI D
Sbjct: 230 VDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIAD 289

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT ++TEIN  IG  GVVS ECK +VSQYG  I DLL++   P+K+C Q+GL
Sbjct: 290 SGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGL 349

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGD---SAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C F+G   VS GI++VV+ E V +       +CSACEMAVVW+QNQL Q +T++ +L Y+
Sbjct: 350 CTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYV 409

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           N+LC+ LP+PMGES +DC  + +MP++ FTIG K F L PE+YILK GEG A  CISGF 
Sbjct: 410 NQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFT 469

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct: 470 AMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508

Hordeum vulgare (taxid: 4513)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 4

EC: 0

>sp|P40782|CYPR1_CYNCA Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 209/337 (62%), Positives = 267/337 (79%), Gaps = 1/337 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT+E  +TFL A+FDGI+GLGF+EI+VGDAVPVW  M+ QGLV E VFSFWLNR+
Sbjct: 137 QDFIEATKEPGITFLAAKFDGILGLGFQEISVGDAVPVWYTMLNQGLVQEPVFSFWLNRN 196

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D +EGGE+VFGGVDP HFKG+HTYVPVT+KGYWQFE+GD+LIG+++TG C  GCAAI D
Sbjct: 197 ADEQEGGELVFGGVDPNHFKGEHTYVPVTQKGYWQFEMGDVLIGDKTTGFCASGCAAIAD 256

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAG T +VT+IN AIG  GV+S +CK +V QYG  + ++L+S   PEK+C Q+ L
Sbjct: 257 SGTSLLAGTTTIVTQINQAIGAAGVMSQQCKSLVDQYGKSMIEMLLSEEQPEKICSQMKL 316

Query: 233 CAFNGAEYVSTGIKTVVEK-ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINE 291
           C+F+G+   S  I++VV+K +  S+G    C  C   VVW+QNQ++Q +T+E +++Y+++
Sbjct: 317 CSFDGSHDTSMIIESVVDKSKGKSSGLPMRCVPCARWVVWMQNQIRQNETEENIINYVDK 376

Query: 292 LCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAF 351
           LC+ LP+PMGES +DC  + +MPN++FT+G K FNLSPEQY+LK GEG    CISGF A 
Sbjct: 377 LCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAM 436

Query: 352 DLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           D+ PP GPLWILGDVFMG YHTVFD G LR+GFAEAA
Sbjct: 437 DVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9XEC4|APA3_ARATH Aspartic proteinase A3 OS=Arabidopsis thaliana GN=APA3 PE=1 SV=1

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 202/336 (60%), Positives = 261/336 (77%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT E  +TFLLA+FDGI+GLGF+EI+VG++ PVW NMVE+GLV E +FSFWLNR+
Sbjct: 173 QEFIEATSEPGITFLLAKFDGILGLGFKEISVGNSTPVWYNMVEKGLVKEPIFSFWLNRN 232

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P   EGGEIVFGGVDPKHFKG+HT+VPVT KGYWQF++GD+ I  + TG C  GC+AI D
Sbjct: 233 PKDPEGGEIVFGGVDPKHFKGEHTFVPVTHKGYWQFDMGDLQIAGKPTGYCAKGCSAIAD 292

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLL GP+ V+T INHAIG +G+VS ECK VV QYG  + + L++   P+KVC QIG+
Sbjct: 293 SGTSLLTGPSTVITMINHAIGAQGIVSRECKAVVDQYGKTMLNSLLAQEDPKKVCSQIGV 352

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL 292
           CA++G + VS GI++VV+       + A+CSACEMA VW++++L Q QT+E++L+Y  EL
Sbjct: 353 CAYDGTQSVSMGIQSVVDDGTSGLLNQAMCSACEMAAVWMESELTQNQTQERILAYAAEL 412

Query: 293 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFD 352
           CD +P    +S +DC R+ +MP V+F+IG + F+L+P+ YI K GEG+   C SGF A D
Sbjct: 413 CDHIPTQNQQSAVDCGRVSSMPIVTFSIGGRSFDLTPQDYIFKIGEGVESQCTSGFTAMD 472

Query: 353 LPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           + PPRGPLWILGD+FMG YHTVFD GK R+GFA+AA
Sbjct: 473 IAPPRGPLWILGDIFMGPYHTVFDYGKGRVGFAKAA 508

Involved in the processing and degradation of storage proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9XFX4|CARDB_CYNCA Procardosin-B OS=Cynara cardunculus GN=cardB PE=1 SV=1

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 259/335 (77%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIE T E    FL + FDGI+GLGF+EI+ G AVPVW NMV QGLV E VFSFWLNR+
Sbjct: 171 QDFIETTEEDDTVFLKSEFDGILGLGFQEISAGKAVPVWYNMVNQGLVEEAVFSFWLNRN 230

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D EEGGE+VFGGVDP HF+G HTYVPVT+KGYWQFE+GD+LIG++S+G C GGCAAI D
Sbjct: 231 VDEEEGGELVFGGVDPNHFRGNHTYVPVTRKGYWQFEMGDVLIGDKSSGFCAGGCAAIAD 290

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTS  AGPT ++T+IN AIG +GV++ +CK +V QYG  +  +L S + P+K+C  + L
Sbjct: 291 SGTSFFAGPTAIITQINQAIGAKGVLNQQCKTLVGQYGKNMIQMLTSEVQPDKICSHMKL 350

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL 292
           C F+GA  V + I++VV+K N  +    +C+ CEMA+V +QN++K+ +T++ +++++NE+
Sbjct: 351 CTFDGAHDVRSMIESVVDKNNDKSSGGEICTFCEMALVRMQNEIKRNETEDNIINHVNEV 410

Query: 293 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFD 352
           CD LP    ESI+DC+ I +MPN++FTIG K+F ++PEQYI K GEG A  CISGF A D
Sbjct: 411 CDQLPTSSAESIVDCNGISSMPNIAFTIGSKLFEVTPEQYIYKVGEGEAATCISGFTALD 470

Query: 353 LPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           +  P+GP+WILGD+FMG YHTVFD GKLR+GFAEA
Sbjct: 471 IMSPQGPIWILGDMFMGPYHTVFDYGKLRVGFAEA 505

Aspartic protease. Cleaves alpha-lactalbumin but not beta-lactoglobulin.

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9XFX3|CARDA_CYNCA Procardosin-A OS=Cynara cardunculus GN=cardA PE=1 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/339 (57%), Positives = 245/339 (72%), Gaps = 8/339 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT E    FL   FDGI+GL F+ I+V    PVW NM+ QGLV E  FSFWLNR+
Sbjct: 171 QDFIEATDEADNVFLHRLFDGILGLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRN 226

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D EEGGE+VFGG+DP HF+G HTYVPVT + YWQF +GD+LIG++STG C  GC A  D
Sbjct: 227 VDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFAD 286

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLL+GPT +VT+INHAIG  GV++ +CK VVS+YG  I ++L S + P+K+C  + L
Sbjct: 287 SGTSLLSGPTAIVTQINHAIGANGVMNQQCKTVVSRYGRDIIEMLRSKIQPDKICSHMKL 346

Query: 233 CAFNGAEYVSTGIKTVVEKENVSAG---DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C F+GA  VS+ I++VV+K N  +       +C+ CEMAVVW+QN++KQ +T++ +++Y 
Sbjct: 347 CTFDGARDVSSIIESVVDKNNDKSSGGIHDEMCTFCEMAVVWMQNEIKQSETEDNIINYA 406

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           NELC+ L     E  +DC+ + +MPNVSFTIG K F L+PEQYILK G+G A  CISGF 
Sbjct: 407 NELCEHLSTSSEELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFT 466

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D     GPLWILGDVFM  YHTVFD G L +GFAEAA
Sbjct: 467 AMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 504

Aspartic proteinase with a high preference for bonds between hydrophobic residues. Cleaves alpha-lactalbumin but not beta-lactoglobulin.

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
224124910	507	predicted protein [Populus trichocarpa]	0.865	0.662	0.719	1e-150
294440430	506	aspartic protease 1 [Nicotiana tabacum]	0.863	0.662	0.721	1e-148
171854659	506	putative aspartic protease [Capsicum chi	0.865	0.664	0.715	1e-148
12231178	505	aspartic proteinase 4 [Nepenthes alata]	0.863	0.663	0.728	1e-147
82623417	506	aspartic protease precursor-like [Solanu	0.865	0.664	0.713	1e-146
418731269	372	aspartic protease, partial [Solanum tube	0.865	0.903	0.713	1e-146
350535356	506	aspartic protease precursor [Solanum lyc	0.865	0.664	0.707	1e-146
50540937	497	Asp [Solanum tuberosum]	0.860	0.672	0.708	1e-144
255543036	494	Aspartic proteinase precursor, putative	0.837	0.657	0.728	1e-144
356534977	508	PREDICTED: aspartic proteinase-like [Gly	0.863	0.659	0.715	1e-143

>gi|224124910|ref|XP_002319454.1| predicted protein [Populus trichocarpa] gi|222857830|gb|EEE95377.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 244/339 (71%), Positives = 298/339 (87%), Gaps = 3/339 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVF+EAT+EGSL+F+L +FDGI+GLGF+EI+VG+ VP+W NM++Q LV +EVFSFWLNR+
Sbjct: 169 QVFVEATKEGSLSFILGKFDGILGLGFQEISVGNVVPLWYNMIQQDLVDDEVFSFWLNRN 228

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P+A+EGGE+VFGGVDPKHFKGKHTYVPVT+KGYWQ  +GD LIG  STG+CEGGCAAIVD
Sbjct: 229 PEAKEGGELVFGGVDPKHFKGKHTYVPVTQKGYWQINMGDFLIGKHSTGLCEGGCAAIVD 288

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPTP++TEINHAIG EG+VSAECK VVS YGDLIW+L++SG+ P KVC Q+GL
Sbjct: 289 SGTSLLAGPTPIITEINHAIGAEGLVSAECKEVVSHYGDLIWELIISGVQPSKVCTQLGL 348

Query: 233 CAFNGAEYVSTGIKTVVEKEN---VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C FN A+   TGI++VVEKEN    SAG+   C+AC+M V+WVQNQL++K TKE  ++Y+
Sbjct: 349 CIFNEAKSARTGIESVVEKENKEKSSAGNDLPCTACQMLVIWVQNQLREKATKETAINYL 408

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           ++LC+SLP+PMG+S IDC+ I TMPN++FTIGDK F+L+PEQYILKTGEGIA+VCISGFM
Sbjct: 409 DKLCESLPSPMGQSSIDCNSISTMPNITFTIGDKPFSLTPEQYILKTGEGIAQVCISGFM 468

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D+PPPRGPLWILGDVFMG YHT+FD G L +GFAEAA
Sbjct: 469 ALDVPPPRGPLWILGDVFMGAYHTIFDYGNLEVGFAEAA 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294440430|gb|ADE74632.1| aspartic protease 1 [Nicotiana tabacum]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 243/337 (72%), Positives = 292/337 (86%), Gaps = 2/337 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATRE S+TF++A+FDGI+GLGF+EI+VG+A PVW NMV QGLV E+VFSFW+NRD
Sbjct: 169 QVFIEATREPSITFIIAKFDGILGLGFQEISVGNATPVWYNMVGQGLVKEQVFSFWINRD 228

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
             A+EGGE+VFGGVD  HFKG HTYVP+T+KGYWQF +GD LIGN STGVC GGCAAIVD
Sbjct: 229 ATAKEGGELVFGGVDSNHFKGNHTYVPLTQKGYWQFNMGDFLIGNASTGVCAGGCAAIVD 288

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT VVT+INHAIG EG+VS ECK +VSQYG++IW+LLVSG+ P++VC Q GL
Sbjct: 289 SGTSLLAGPTTVVTQINHAIGAEGIVSMECKTIVSQYGEMIWNLLVSGVKPDQVCSQAGL 348

Query: 233 CAFNGAEYVSTGIKTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYIN 290
           C FNGA++VS+ I+TVVE+E    S G++ +C+ACEMAVVW+QNQLKQK+TKE+VL Y+N
Sbjct: 349 CYFNGAQHVSSNIRTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQKETKERVLEYVN 408

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMA 350
           +LC+ LP+PMGES+IDC  I  MPN++FTI DK + L+PEQYILKTGEGI  +C+SGF A
Sbjct: 409 QLCEKLPSPMGESVIDCSMISAMPNITFTIKDKAYVLTPEQYILKTGEGITTICMSGFAA 468

Query: 351 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            D+PPPRGPLWILGDVFMGVYHTVFD G  R+GFAEA
Sbjct: 469 LDVPPPRGPLWILGDVFMGVYHTVFDYGNSRLGFAEA 505

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171854659|dbj|BAG16519.1| putative aspartic protease [Capsicum chinense]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 242/338 (71%), Positives = 294/338 (86%), Gaps = 2/338 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATRE S+TF++ +FDGI+GLGF+EI+VG+A PVW NMV+QGLV E VFSFW NRD
Sbjct: 169 QVFIEATREPSITFIIGKFDGILGLGFQEISVGNATPVWYNMVDQGLVKEPVFSFWFNRD 228

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              +EGGE+VFGGVDPKHFKG HTYVP+T+KGYWQF +GD LIGN STG C GGCAAIVD
Sbjct: 229 ASTKEGGELVFGGVDPKHFKGNHTYVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVD 288

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT +VT++NHAIG EGVVSAECK +VSQYG+++WDLLVSG+ P++VC Q GL
Sbjct: 289 SGTSLLAGPTTIVTQLNHAIGAEGVVSAECKTIVSQYGEVLWDLLVSGVRPDQVCSQAGL 348

Query: 233 CAFNGAEYVSTGIKTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYIN 290
           C FNGAE+VS+ I+TVVE+EN   S G++ +C+ CEMAVVW+QNQLKQ+ TKE+VL Y++
Sbjct: 349 CFFNGAEHVSSNIRTVVERENEGSSVGEAPLCTVCEMAVVWIQNQLKQQGTKERVLEYVD 408

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMA 350
           +LC+ LP+PMGES++DC+ I ++PN++FTI DK F L+PEQYILKTGEGIA +CISGF A
Sbjct: 409 QLCEKLPSPMGESVVDCNSISSLPNITFTIKDKAFVLTPEQYILKTGEGIASICISGFAA 468

Query: 351 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           FD+PPPRGPLWILGDVFMG YHTVFD G  ++GFAEAA
Sbjct: 469 FDVPPPRGPLWILGDVFMGPYHTVFDYGNSQVGFAEAA 506

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12231178|dbj|BAB20972.1| aspartic proteinase 4 [Nepenthes alata]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/339 (72%), Positives = 291/339 (85%), Gaps = 4/339 (1%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEA+RE SLTF LA+FDGI+GLGF+EI+VGD VPVW NMVEQGLVSE+VFSFW NRD
Sbjct: 168 QVFIEASREKSLTFALAKFDGILGLGFQEISVGDVVPVWYNMVEQGLVSEKVFSFWFNRD 227

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P A+ GGEIVFGG+D KHF G+H YVP+T+KGYWQFE+G+ LIGN STG C GGC AIVD
Sbjct: 228 PKAKIGGEIVFGGIDEKHFVGEHIYVPITRKGYWQFEMGNFLIGNYSTGFCRGGCDAIVD 287

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGP  VVTE+NHAIG EG+ S ECK VV QYGD+IWDLLVSG+ P+K+C Q+ L
Sbjct: 288 SGTSLLAGPMHVVTEVNHAIGAEGIASMECKEVVYQYGDMIWDLLVSGVQPDKICSQLAL 347

Query: 233 CAFNGAEYVSTGIKTVVEKE---NVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C FN A+++S GIKTV+E+E   N S  D  +C+ACEMAVVW+QNQL+++ TKEKVL+YI
Sbjct: 348 C-FNDAQFLSIGIKTVIERENRKNSSVADDFLCTACEMAVVWIQNQLRREVTKEKVLNYI 406

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           NELCDSLP+PMGES+IDCD IP MPNV+FTIG+K F L+PEQY+LK GEG A VC+SGF+
Sbjct: 407 NELCDSLPSPMGESVIDCDSIPYMPNVTFTIGEKPFKLTPEQYVLKAGEGDAMVCLSGFI 466

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D+PPP GPLWILGDVFMGVYHTVFD G L++GFAE+A
Sbjct: 467 ALDVPPPSGPLWILGDVFMGVYHTVFDFGNLKLGFAESA 505

Source: Nepenthes alata

Species: Nepenthes alata

Genus: Nepenthes

Family: Nepenthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623417|gb|ABB87123.1| aspartic protease precursor-like [Solanum tuberosum]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 241/338 (71%), Positives = 291/338 (86%), Gaps = 2/338 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATRE S+TF++A+FDGI+GLGF+EI+VG+  PVW NMV QGLV E VFSFW NRD
Sbjct: 169 QVFIEATREPSITFIVAKFDGILGLGFQEISVGNTTPVWYNMVGQGLVKESVFSFWFNRD 228

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            +A+EGGE+VFGGVDPKHFKG HTYVP+T+KGYWQF +GD LIGN STG C GGCAAIVD
Sbjct: 229 ANAKEGGELVFGGVDPKHFKGNHTYVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVD 288

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT +VT+INHAIG EG+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GL
Sbjct: 289 SGTSLLAGPTTIVTQINHAIGAEGIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGL 348

Query: 233 CAFNGAEYVSTGIKTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYIN 290
           C  +GA++VS+ I+TVVE+E    S G++ +C+ACEMAVVW+QNQLKQ  TKEKVL Y+N
Sbjct: 349 CFVDGAQHVSSNIRTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQAGTKEKVLEYVN 408

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMA 350
           +LC+ +P+PMGES IDC+ I +MP++SFTI DK F L+PEQYILKTGEG+A +C+SGF A
Sbjct: 409 QLCEKIPSPMGESTIDCNSISSMPDISFTIKDKAFVLTPEQYILKTGEGVATICVSGFAA 468

Query: 351 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            D+PPPRGPLWILGDVFMG YHTVFD GK ++GFAEAA
Sbjct: 469 LDVPPPRGPLWILGDVFMGPYHTVFDYGKSQVGFAEAA 506

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731269|gb|AFX67029.1| aspartic protease, partial [Solanum tuberosum]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 241/338 (71%), Positives = 291/338 (86%), Gaps = 2/338 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATRE S+TF++A+FDGI+GLGF+EI+VG+  PVW NMV QGLV E VFSFW NRD
Sbjct: 35  QVFIEATREPSITFIVAKFDGILGLGFQEISVGNTTPVWYNMVGQGLVKESVFSFWFNRD 94

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            +A+EGGE+VFGGVDPKHFKG HTYVP+T+KGYWQF +GD LIGN STG C GGCAAIVD
Sbjct: 95  ANAKEGGELVFGGVDPKHFKGNHTYVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVD 154

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT +VT+INHAIG EG+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GL
Sbjct: 155 SGTSLLAGPTTIVTQINHAIGAEGIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGL 214

Query: 233 CAFNGAEYVSTGIKTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYIN 290
           C  +GA++VS+ I+TVVE+E    S G++ +C+ACEMAVVW+QNQLKQ  TKEKVL Y+N
Sbjct: 215 CFVDGAQHVSSNIRTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQAGTKEKVLEYVN 274

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMA 350
           +LC+ +P+PMGES IDC+ I +MP++SFTI DK F L+PEQYILKTGEG+A +C+SGF A
Sbjct: 275 QLCEKIPSPMGESTIDCNSISSMPDISFTIKDKAFVLTPEQYILKTGEGVATICVSGFAA 334

Query: 351 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            D+PPPRGPLWILGDVFMG YHTVFD GK ++GFAEAA
Sbjct: 335 LDVPPPRGPLWILGDVFMGPYHTVFDYGKSQVGFAEAA 372

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535356|ref|NP_001234702.1| aspartic protease precursor [Solanum lycopersicum] gi|951449|gb|AAB18280.1| aspartic protease precursor [Solanum lycopersicum]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 239/338 (70%), Positives = 292/338 (86%), Gaps = 2/338 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATRE S+TF++A+FDGI+GLGF+EI+VG+  PVW NMV QGLV E VFSFW NRD
Sbjct: 169 QVFIEATREPSITFIVAKFDGILGLGFQEISVGNTTPVWYNMVGQGLVKEPVFSFWFNRD 228

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            +A+EGGE+VFGGVDPKHFKG HT VP+T+KGYWQF +GD LIGN STG C GGCAAIVD
Sbjct: 229 ANAKEGGELVFGGVDPKHFKGNHTCVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVD 288

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT +VT+INHAIG EG+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GL
Sbjct: 289 SGTSLLAGPTTIVTQINHAIGAEGIVSMECKTIVSQYGEMIWDLLVSGIRPDQVCSQAGL 348

Query: 233 CAFNGAEYVSTGIKTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYIN 290
           C  +G+++VS+ I+TVVE+E    S G++ +C+ACEMAVVW+QNQLKQ+QTKEKVL Y+N
Sbjct: 349 CFLDGSQHVSSNIRTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQEQTKEKVLEYVN 408

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMA 350
           +LC+ +P+PMGES IDC+RI +MP+++FTI D  F L+PEQYILKTGEG+A +C+SGF A
Sbjct: 409 QLCEKIPSPMGESAIDCNRISSMPDITFTIKDTAFVLTPEQYILKTGEGVATICVSGFAA 468

Query: 351 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            D+PPPRGPLWILGDVFMG YHTVFD GK ++GFAEAA
Sbjct: 469 LDVPPPRGPLWILGDVFMGPYHTVFDYGKSQVGFAEAA 506

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50540937|gb|AAT77954.1| Asp [Solanum tuberosum]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/336 (70%), Positives = 289/336 (86%), Gaps = 2/336 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATRE S+TF++A+FDGI+GLGF+EI+VG+  PVW NMV QGLV E VFSFW NRD
Sbjct: 157 QVFIEATREPSITFIVAKFDGILGLGFQEISVGNTTPVWYNMVGQGLVKEPVFSFWFNRD 216

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            +A+EGGE+VFGGVDPKHFKG HTYVP+T+KGYWQF +GD LIGN STG C GGCAAIVD
Sbjct: 217 ANAKEGGELVFGGVDPKHFKGNHTYVPLTQKGYWQFNMGDFLIGNTSTGYCAGGCAAIVD 276

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT +V +INHAIG EG+VS ECK +VSQYG++IWDLLVSG+ P++VC Q GL
Sbjct: 277 SGTSLLAGPTTIVAQINHAIGAEGIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGL 336

Query: 233 CAFNGAEYVSTGIKTVVEKEN--VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYIN 290
           C  +GA++VS+ IKTVVE+E    S G++ +C+ACEMAVVW+QNQLKQ+ TKEKVL Y+N
Sbjct: 337 CFVDGAQHVSSNIKTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVN 396

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMA 350
           +LC+ +P+PMGES IDC+ I +MP+++FTI DK F L+PEQYILKTGEG+A +C+SGF A
Sbjct: 397 QLCEKIPSPMGESAIDCNNISSMPDITFTIKDKAFVLTPEQYILKTGEGVATICVSGFAA 456

Query: 351 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386
            D+PPPRGPLWILGDVFMG YHTVFD GK ++GFAE
Sbjct: 457 LDVPPPRGPLWILGDVFMGPYHTVFDYGKSQVGFAE 492

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543036|ref|XP_002512581.1| Aspartic proteinase precursor, putative [Ricinus communis] gi|223548542|gb|EEF50033.1| Aspartic proteinase precursor, putative [Ricinus communis]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/339 (72%), Positives = 282/339 (83%), Gaps = 14/339 (4%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEATREGSLTF+LA+FDGI GLGF+EI+VGDAVPVW NMV+QGLV + VFSFWLN D
Sbjct: 167 QVFIEATREGSLTFVLAKFDGIFGLGFQEISVGDAVPVWYNMVQQGLVGDPVFSFWLNND 226

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           PDA+EGGE+VFGGVD KH++GKHTYVPVT+KGYWQF +GD +IGN ST           D
Sbjct: 227 PDAKEGGELVFGGVDEKHYRGKHTYVPVTQKGYWQFNMGDFIIGNHST-----------D 275

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPTP+V EINHAIG EG+VSAECK VVSQYG+LIWDLL+SG+ P KVC Q+GL
Sbjct: 276 SGTSLLAGPTPIVAEINHAIGAEGIVSAECKEVVSQYGNLIWDLLISGVQPGKVCSQLGL 335

Query: 233 CAFNGAEYVSTGIKTVVEKENV---SAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C F G  Y S  I++VVE+EN+   S GD  +C+ACEM V+WVQNQLK KQTKE  L Y+
Sbjct: 336 CTFRGDRYESNVIESVVEEENMEGSSVGDDVLCTACEMLVIWVQNQLKHKQTKEAALEYV 395

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           N+LC+SLP+PMGESIIDC     MPN+ FTIGDK F L+PEQYILKTGEGIA VCISGFM
Sbjct: 396 NKLCESLPSPMGESIIDCASTTGMPNIIFTIGDKQFQLTPEQYILKTGEGIASVCISGFM 455

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D+PPPRGPLWILGDVFM VYHTVFD G L++GFAEAA
Sbjct: 456 ALDVPPPRGPLWILGDVFMRVYHTVFDFGDLQVGFAEAA 494

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534977|ref|XP_003536026.1| PREDICTED: aspartic proteinase-like [Glycine max]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/338 (71%), Positives = 293/338 (86%), Gaps = 3/338 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEATREGSL+F+LA+FDG++GLGF+EI+V +AVPVW NMV+Q LVSE+VFSFWLN D
Sbjct: 172 QDFIEATREGSLSFVLAKFDGLLGLGFQEISVENAVPVWYNMVKQNLVSEQVFSFWLNGD 231

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P A++GGE++FGG+DPKHFKG H YVPVTKKGYWQ E+GD  IG  STGVCEGGCAAIVD
Sbjct: 232 PKAKDGGELIFGGIDPKHFKGDHIYVPVTKKGYWQIEMGDFFIGGLSTGVCEGGCAAIVD 291

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT VVTEINHAIG EGV+S ECK VVS+YG+L+WDLLVSG+ P+ VC Q+GL
Sbjct: 292 SGTSLLAGPTTVVTEINHAIGAEGVLSVECKEVVSEYGELLWDLLVSGVRPDDVCSQVGL 351

Query: 233 CAFNGAEYVSTGIKTVVEK--ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYIN 290
           C F  A+  S GI+ V EK    +SA D+A+C++C+M VVW+QNQLKQK+TKE V +Y+N
Sbjct: 352 C-FKRAKSESNGIEMVTEKGQRELSAKDTALCTSCQMLVVWIQNQLKQKKTKEIVFNYVN 410

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMA 350
           +LC+SLP+P GES++DC+ I  +PN++FT+GDK F L+PEQYILKTGEGIAEVC+SGF+A
Sbjct: 411 QLCESLPSPNGESVVDCNSIYGLPNITFTVGDKPFTLTPEQYILKTGEGIAEVCLSGFIA 470

Query: 351 FDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           FD+PPPRGPLWILGDVFM VYHTVFD G LR+GFA+AA
Sbjct: 471 FDIPPPRGPLWILGDVFMRVYHTVFDYGNLRVGFAKAA 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
TAIR|locus:2008940	506	APA1 "aspartic proteinase A1"	0.863	0.662	0.661	3.3e-127
UNIPROTKB|B9RXH6	511	RCOM_0903730 "Aspartic protein	0.865	0.657	0.666	4.2e-127
TAIR|locus:2018037	513	AT1G62290 [Arabidopsis thalian	0.863	0.653	0.642	9.2e-123
TAIR|locus:2137189	508	AT4G04460 [Arabidopsis thalian	0.865	0.661	0.601	1.7e-114
WB|WBGene00000217	444	asp-4 [Caenorhabditis elegans	0.378	0.331	0.496	2.6e-61
DICTYBASE|DDB_G0279411	383	ctsD "cathepsin D" [Dictyostel	0.389	0.394	0.481	7.8e-54
UNIPROTKB|E2RJN2	396	CTSE "Uncharacterized protein"	0.384	0.376	0.457	9.9e-52
UNIPROTKB|P43159	396	CTSE "Cathepsin E" [Oryctolagu	0.386	0.378	0.448	3.3e-51
FB|FBgn0033933	404	CG10104 [Drosophila melanogast	0.358	0.344	0.415	1.3e-49
UNIPROTKB|F1NLA4	399	LOC431167 "Uncharacterized pro	0.396	0.385	0.345	4.2e-49

TAIR|locus:2008940 APA1 "aspartic proteinase A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 225/340 (66%), Positives = 276/340 (81%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q FIEAT+E  +TF++A+FDGI+GLGF+EI+VG A PVW NM++QGL+ E VFSFWLNR+
Sbjct:   168 QEFIEATKEPGITFVVAKFDGILGLGFQEISVGKAAPVWYNMLKQGLIKEPVFSFWLNRN 227

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              D EEGGE+VFGGVDP HFKGKHTYVPVT+KGYWQF++GD+LIG   TG CE GC+AI D
Sbjct:   228 ADEEEGGELVFGGVDPNHFKGKHTYVPVTQKGYWQFDMGDVLIGGAPTGFCESGCSAIAD 287

Query:   173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
             SGTSLLAGPT ++T INHAIG  GVVS +CK VV QYG  I DLL+S   P+K+C QIGL
Sbjct:   288 SGTSLLAGPTTIITMINHAIGAAGVVSQQCKTVVDQYGQTILDLLLSETQPKKICSQIGL 347

Query:   233 CAFNGAEYVSTGIKTVVEKENVS----AGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSY 288
             C F+G   VS GI++VV+KEN       GD+A CSACEMAVVW+Q+QL+Q  T+E++L+Y
Sbjct:   348 CTFDGTRGVSMGIESVVDKENAKLSNGVGDAA-CSACEMAVVWIQSQLRQNMTQERILNY 406

Query:   289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
             +NELC+ LP+PMGES +DC ++ TMP VS TIG K+F+L+PE+Y+LK GEG    CISGF
Sbjct:   407 VNELCERLPSPMGESAVDCAQLSTMPTVSLTIGGKVFDLAPEEYVLKVGEGPVAQCISGF 466

Query:   349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
             +A D+ PPRGPLWILGDVFMG YHTVFD G  ++GFAEAA
Sbjct:   467 IALDVAPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEAA 506

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS;IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048513 "organ development" evidence=RCA

UNIPROTKB|B9RXH6 RCOM_0903730 "Aspartic proteinase, putative" [Ricinus communis (taxid:3988)]

 Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
 Identities = 226/339 (66%), Positives = 278/339 (82%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q FIEAT+E  +TF+ A+FDGI+GLGF+EI+VG+AVPVW NM++QGL+ E VFSFWLNR+
Sbjct:   173 QEFIEATKEPGVTFVAAKFDGILGLGFQEISVGNAVPVWYNMIKQGLIKEPVFSFWLNRN 232

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                EEGGEIVFGGVD  H+KGKHTYVPVT+KGYWQFE+GD+LIG++ T  C GGC+AI D
Sbjct:   233 TQGEEGGEIVFGGVDLNHYKGKHTYVPVTQKGYWQFEMGDVLIGHKPTEYCAGGCSAIAD 292

Query:   173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
             SGTSLLAGPT VVT IN AIG  GV S ECK V++QYG+ I DLL++   P+K+C QIGL
Sbjct:   293 SGTSLLAGPTTVVTLINEAIGATGVASQECKTVIAQYGETIMDLLIAEAQPKKICSQIGL 352

Query:   233 CAFNGAEYVSTGIKTVVEKEN-VSAG--DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
             C F+G   VS GI++VV+  N  S+G    A+CSACEM VVW+QNQL++ QT++++L+Y+
Sbjct:   353 CTFDGTRGVSMGIQSVVDDNNDKSSGIVRDAMCSACEMTVVWMQNQLRENQTQDRILNYV 412

Query:   290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
             NELCD +PNP+GESI+DC  I +MP VSFTIG K+F+LSP++YILK GEG    CISGFM
Sbjct:   413 NELCDRIPNPLGESIVDCGSISSMPVVSFTIGGKVFDLSPQEYILKVGEGAQAQCISGFM 472

Query:   350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
             A D+PPPRGPLWILGD+FMG YHTVFD G LR+GFAEAA
Sbjct:   473 ALDVPPPRGPLWILGDIFMGRYHTVFDYGNLRVGFAEAA 511

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2018037 AT1G62290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 217/338 (64%), Positives = 272/338 (80%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q FIE T E  LTFL+A+FDG++GLGF+EIAVG+A PVW NM++QGL+   VFSFWLNRD
Sbjct:   175 QEFIETTSEPGLTFLVAKFDGLLGLGFQEIAVGNATPVWYNMLKQGLIKRPVFSFWLNRD 234

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
             P +EEGGEIVFGGVDPKHF+G+HT+VPVT++GYWQF++G++LI  +STG C  GC+AI D
Sbjct:   235 PKSEEGGEIVFGGVDPKHFRGEHTFVPVTQRGYWQFDMGEVLIAGESTGYCGSGCSAIAD 294

Query:   173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
             SGTSLLAGPT VV  IN AIG  GVVS +CK VV QYG  I DLL++   P+K+C QIGL
Sbjct:   295 SGTSLLAGPTAVVAMINKAIGASGVVSQQCKTVVDQYGQTILDLLLAETQPKKICSQIGL 354

Query:   233 CAFNGAEYVSTGIKTVVEKENV--SAG-DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
             CA++G   VS GI++VV+KEN   S+G   A C ACEMAVVW+Q+QL+Q  T+E++++YI
Sbjct:   355 CAYDGTHGVSMGIESVVDKENTRSSSGLRDAGCPACEMAVVWIQSQLRQNMTQERIVNYI 414

Query:   290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
             NE+C+ +P+P GES +DC ++  MP VSFTIG K+F+L+PE+Y+LK GEG    CISGF 
Sbjct:   415 NEICERMPSPNGESAVDCSQLSKMPTVSFTIGGKVFDLAPEEYVLKIGEGPVAQCISGFT 474

Query:   350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
             A D+PPPRGPLWILGDVFMG YHTVFD G  ++GFAEA
Sbjct:   475 ALDIPPPRGPLWILGDVFMGKYHTVFDFGNEQVGFAEA 512

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2137189 AT4G04460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
 Identities = 202/336 (60%), Positives = 261/336 (77%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q FIEAT E  +TFLLA+FDGI+GLGF+EI+VG++ PVW NMVE+GLV E +FSFWLNR+
Sbjct:   173 QEFIEATSEPGITFLLAKFDGILGLGFKEISVGNSTPVWYNMVEKGLVKEPIFSFWLNRN 232

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
             P   EGGEIVFGGVDPKHFKG+HT+VPVT KGYWQF++GD+ I  + TG C  GC+AI D
Sbjct:   233 PKDPEGGEIVFGGVDPKHFKGEHTFVPVTHKGYWQFDMGDLQIAGKPTGYCAKGCSAIAD 292

Query:   173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
             SGTSLL GP+ V+T INHAIG +G+VS ECK VV QYG  + + L++   P+KVC QIG+
Sbjct:   293 SGTSLLTGPSTVITMINHAIGAQGIVSRECKAVVDQYGKTMLNSLLAQEDPKKVCSQIGV 352

Query:   233 CAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINEL 292
             CA++G + VS GI++VV+       + A+CSACEMA VW++++L Q QT+E++L+Y  EL
Sbjct:   353 CAYDGTQSVSMGIQSVVDDGTSGLLNQAMCSACEMAAVWMESELTQNQTQERILAYAAEL 412

Query:   293 CDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFD 352
             CD +P    +S +DC R+ +MP V+F+IG + F+L+P+ YI K GEG+   C SGF A D
Sbjct:   413 CDHIPTQNQQSAVDCGRVSSMPIVTFSIGGRSFDLTPQDYIFKIGEGVESQCTSGFTAMD 472

Query:   353 LPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
             + PPRGPLWILGD+FMG YHTVFD GK R+GFA+AA
Sbjct:   473 IAPPRGPLWILGDIFMGPYHTVFDYGKGRVGFAKAA 508

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

WB|WBGene00000217 asp-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 385 (140.6 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 74/149 (49%), Positives = 101/149 (67%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q F EAT E  +TF+ A+FDGI+G+ + EIAV    PV++ + EQ  V   +FSFWLNR+
Sbjct:   181 QPFAEATSEPGITFVAAKFDGILGMAYPEIAVLGVQPVFNTLFEQKKVPSNLFSFWLNRN 240

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
             PD+E GGEI FGG+D + +    TYVPVT+KGYWQF++ D ++G+   G C  GC AI D
Sbjct:   241 PDSEIGGEITFGGIDSRRYVEPITYVPVTRKGYWQFKM-DKVVGSGVLG-CSNGCQAIAD 298

Query:   173 SGTSLLAGPTPVVTEINHAIGGEGVVSAE 201
             +GTSL+AGP   +  I + IG E ++  E
Sbjct:   299 TGTSLIAGPKAQIEAIQNFIGAEPLIKGE 327

GO:0006508 "proteolysis" evidence=IEA;IMP

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA;ISS

GO:0008219 "cell death" evidence=IMP

GO:0070265 "necrotic cell death" evidence=IGI;IMP

GO:0005764 "lysosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

DICTYBASE|DDB_G0279411 ctsD "cathepsin D" [Dictyostelium discoideum (taxid:44689)]

 Score = 373 (136.4 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 76/158 (48%), Positives = 100/158 (63%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q+F EAT E  + F  A+FDGI+GL F+ I+V    PV+ NM+ QGLVS  +FSFWL+R 
Sbjct:   150 QLFAEATAEPGIAFDFAKFDGILGLAFQSISVNSIPPVFYNMLSQGLVSSTLFSFWLSRT 209

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
             P A  GGE+ FG +D   + G  TYVP+T + YW+F + D  I  QS G C   C AI D
Sbjct:   210 PGAN-GGELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICD 268

Query:   173 SGTSLLAGPTPVVTEINHAIG-----GEGVVSAECKLV 205
             SGTSL+AGP   +T +N  +G     GEGV S +C ++
Sbjct:   269 SGTSLIAGPMADITALNEKLGAVILNGEGVFS-DCSVI 305

GO:0005615 "extracellular space" evidence=IDA

GO:0005764 "lysosome" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E2RJN2 CTSE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 356 (130.4 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 70/153 (45%), Positives = 95/153 (62%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q F E+  E   TF+ A FDGI+GLG+  +AVG   PV+DNM+ Q LV   +FS +++ D
Sbjct:   163 QQFGESVTEPGQTFVNAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDIPMFSVYMSSD 222

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
             P+   G E++FGG D  HF G   +VPVTK+GYWQ  L  I +G  +   C  GC AIVD
Sbjct:   223 PEGGTGSELIFGGYDHSHFSGNLNWVPVTKQGYWQIALDAIQVGG-TVMFCSEGCQAIVD 281

Query:   173 SGTSLLAGPTPVVTEINHAIGGE---GVVSAEC 202
             +GTSL+ GP+  + ++ +AIG E   G    EC
Sbjct:   282 TGTSLITGPSDEIKQLQNAIGAEPMDGEYGVEC 314

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|P43159 CTSE "Cathepsin E" [Oryctolagus cuniculus (taxid:9986)]

 Score = 354 (129.7 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 69/154 (44%), Positives = 97/154 (62%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q F E+ +E   TF+ A FDGI+GLG+  +A G   PV+DNM+ Q LVS  +FS +++ +
Sbjct:   163 QQFGESVKEPGQTFVNAEFDGILGLGYPSLAAGGVTPVFDNMMAQNLVSLPMFSVYMSSN 222

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
             P+   G E+ FGG D  HF G   +VPVTK+GYWQ  L +I +G  S   C  GC AIVD
Sbjct:   223 PEGGSGSELTFGGYDSSHFSGSLNWVPVTKQGYWQIALDEIQVGG-SPMFCPEGCQAIVD 281

Query:   173 SGTSLLAGPTPVVTEINHAIGG---EGVVSAECK 203
             +GTSL+ GP+  + ++  AIG    +G  + EC+
Sbjct:   282 TGTSLITGPSDKIIQLQAAIGATPMDGEYAVECE 315

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=ISS

FB|FBgn0033933 CG10104 [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 59/142 (41%), Positives = 88/142 (61%)

Query:    53 QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
             Q F EAT      FL A+FDGI GL +R I++    P +  M+EQGL+++ +FS +L+R+
Sbjct:   172 QTFAEATEMPGPIFLAAKFDGIFGLAYRSISMQRIKPPFYAMMEQGLLTKPIFSVYLSRN 231

Query:   113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              + ++GG I FGG +P ++ G  TYV V+ + YWQ ++   +I N    +C+ GC  I+D
Sbjct:   232 GE-KDGGAIFFGGSNPHYYTGNFTYVQVSHRAYWQVKMDSAVIRNLE--LCQQGCEVIID 288

Query:   173 SGTSLLAGPTPVVTEINHAIGG 194
             +GTS LA P      IN +IGG
Sbjct:   289 TGTSFLALPYDQAILINESIGG 310

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1NLA4 LOC431167 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 298 (110.0 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 55/159 (34%), Positives = 94/159 (59%)

Query:    51 LLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 110
             ++QVF EAT   +  F+ ARFDG++G+G+   A+    PV+D ++ Q ++ E+VFS + +
Sbjct:   164 IIQVFAEATVLPAFPFIFARFDGVLGMGYPSQAIDGITPVFDRILSQQILKEDVFSVYYS 223

Query:   111 RDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAI 170
             R+   + GGEI+ GG DP ++ G   Y+ +++ GYWQ  +  + +G +    C+ GC+  
Sbjct:   224 RNSPLKPGGEIILGGTDPAYYTGDFHYLSISRSGYWQISMKGVSVGAEML-FCKEGCSVA 282

Query:   171 VDSGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLV 205
             +D+G S + GP   V+ +  AIG     EG    +C+ V
Sbjct:   283 IDTGASYITGPAGPVSVLMKAIGAAEMTEGEYVVDCEKV 321

GO:0001823 "mesonephros development" evidence=IEA

GO:0002003 "angiotensin maturation" evidence=IEA

GO:0002018 "renin-angiotensin regulation of aldosterone production" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0009755 "hormone-mediated signaling pathway" evidence=IEA

GO:0042756 "drinking behavior" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42456	ASPR1_ORYSJ	3, ., 4, ., 2, 3, ., -	0.6608	0.8582	0.6542	yes	no
O65390	APA1_ARATH	3, ., 4, ., 2, 3, ., -	0.6578	0.8659	0.6640	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIII0008 hypothetical protein (507 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	388
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	1e-99
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	2e-55
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	2e-55
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	3e-52
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	2e-49
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	4e-47
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	6e-44
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	3e-43
cd05487	326	cd05487, renin_like, Renin stimulates production o	1e-41
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	2e-39
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	1e-38
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	2e-36
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	2e-33
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	9e-26
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	3e-25
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	9e-24
cd05487	326	cd05487, renin_like, Renin stimulates production o	5e-22
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	4e-20
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	2e-17
cd05473	364	cd05473, beta_secretase_like, Beta-secretase, aspa	2e-15
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	5e-15
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	8e-15
PTZ00147	453	PTZ00147, PTZ00147, plasmepsin-1; Provisional	1e-13
cd05474	295	cd05474, SAP_like, SAPs, pepsin-like proteinases s	1e-12
PTZ00013	450	PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona	6e-12
cd06097	278	cd06097, Aspergillopepsin_like, Aspergillopepsin_l	4e-11
pfam03489	35	pfam03489, SapB_2, Saposin-like type B, region 2	1e-10
pfam05184	39	pfam05184, SapB_1, Saposin-like type B, region 1	5e-10
smart00741	76	smart00741, SapB, Saposin (B) Domains	8e-08
PTZ00147	453	PTZ00147, PTZ00147, plasmepsin-1; Provisional	7e-07
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	8e-07
cd06096	326	cd06096, Plasmepsin_5, Plasmepsins are a class of	1e-05
PTZ00013	450	PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona	3e-04
smart00741	76	smart00741, SapB, Saposin (B) Domains	0.001

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score =  298 bits (764), Expect = 1e-99
 Identities = 112/140 (80%), Positives = 127/140 (90%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVFIEAT+E  LTFLLA+FDGI+GLGF+EI+VG AVPVW NMVEQGLV E VFSFWLNR+
Sbjct: 97  QVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRN 156

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           PD EEGGE+VFGGVDPKHFKG+HTYVPVT+KGYWQFE+GD+LIG +STG C GGCAAI D
Sbjct: 157 PDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIAD 216

Query: 173 SGTSLLAGPTPVVTEINHAI 192
           SGTSLLAGPT +VT+IN A+
Sbjct: 217 SGTSLLAGPTTIVTQINSAV 236

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score =  185 bits (471), Expect = 2e-55
 Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 2/149 (1%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F EA  E  LTF+ A+FDGI+G+G+  I+V   VPV+ NMV Q LV   VFSF+LNRD
Sbjct: 99  QTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRD 158

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P A+EGGE++ GG DPKH+ G  TY+PVT+KGYWQF++  + +G      C GGC AI D
Sbjct: 159 PSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGE--FCSGGCQAIAD 216

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAE 201
           +GTSL+AGP   + ++N+AIG + ++  E
Sbjct: 217 TGTSLIAGPVDEIEKLNNAIGAKPIIGGE 245

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score =  184 bits (470), Expect = 2e-55
 Identities = 73/143 (51%), Positives = 90/143 (62%), Gaps = 4/143 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREI-AVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q F  AT+E    F  A FDGI+GLGF  I AVG   PV+DN+  QGL+    FS +LN 
Sbjct: 89  QQFGLATKEPGSFFATAVFDGILGLGFPSIEAVGTYTPVFDNLKSQGLIDSPAFSVYLNS 148

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           D     GGEI+FGGVDP  + G  T+VPVT +GYWQ  L  I +G  S   C  GC AI+
Sbjct: 149 DD--AGGGEIIFGGVDPSKYTGSLTWVPVTSQGYWQITLDSITVGG-SATFCSSGCQAIL 205

Query: 172 DSGTSLLAGPTPVVTEINHAIGG 194
           D+GTSLL GPT +V++I  A+G 
Sbjct: 206 DTGTSLLYGPTSIVSKIAKAVGA 228

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score =  176 bits (448), Expect = 3e-52
 Identities = 62/84 (73%), Positives = 69/84 (82%)

Query: 303 SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 362
           S +DC+ + +MPNVSFTIG K F L+PEQYILK GEG A  CISGF A D+PPPRGPLWI
Sbjct: 234 SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWI 293

Query: 363 LGDVFMGVYHTVFDSGKLRIGFAE 386
           LGDVFMG YHTVFD G LR+GFAE
Sbjct: 294 LGDVFMGAYHTVFDYGNLRVGFAE 317

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score =  169 bits (429), Expect = 2e-49
 Identities = 69/142 (48%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q+F EA ++  +TF+ A+FDGI+G+ +  I+V    PV+DN++ Q LV + VFSF+LNRD
Sbjct: 94  QLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRD 153

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           PDA+ GGE++ GG DPK++ G   YV VT+K YWQ  +  + +G+  T +C+GGC AIVD
Sbjct: 154 PDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVD 212

Query: 173 SGTSLLAGPTPVVTEINHAIGG 194
           +GTSL+ GP   V  +  AIG 
Sbjct: 213 TGTSLITGPVEEVRALQKAIGA 234

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score =  161 bits (410), Expect = 4e-47
 Identities = 70/166 (42%), Positives = 88/166 (53%), Gaps = 3/166 (1%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F  AT E S  F  + FDGI+GLGF  ++V      +D +  QGL+S  VFSF+L RD
Sbjct: 88  QTFGCATSE-SGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRD 146

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAI 170
            D   GGE+ FGG+DP  + G  TY PV     GYWQ  L  I +G +S     GG  AI
Sbjct: 147 GDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAI 206

Query: 171 VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDL 216
           VDSGTSL+  P+ V   I  A+G     S     V     D + D+
Sbjct: 207 VDSGTSLIYLPSSVYDAILKALGAAVSSSDGGYGVDCSPCDTLPDI 252

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score =  154 bits (391), Expect = 6e-44
 Identities = 65/153 (42%), Positives = 91/153 (59%), Gaps = 9/153 (5%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q+F  +  E    F  A FDGI+GL +  IA   A PV+DNM+ QGLVS+++FS +L+ +
Sbjct: 96  QIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSN 155

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              ++G  + FGG+DP ++ G   +VPVT + YWQ  +  + I  Q    C GGC AIVD
Sbjct: 156 G--QQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVD 212

Query: 173 SGTSLLAGPTPVVTEINHAIG------GEGVVS 199
           +GTSLL GP+  +  I   IG      GE VV+
Sbjct: 213 TGTSLLVGPSSDIANIQSDIGASQNQNGEMVVN 245

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score =  152 bits (386), Expect = 3e-43
 Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 1/141 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F E+  E   TF  + FDGI+GL +  +AV    PV+DNM+ Q LV   +FS +++R+
Sbjct: 86  QQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRN 145

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P++ +GGE+VFGG D   F G+  +VPVT +GYWQ +L +I +G      C  GC AIVD
Sbjct: 146 PNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGT-VIFCSDGCQAIVD 204

Query: 173 SGTSLLAGPTPVVTEINHAIG 193
           +GTSL+ GP+  + ++ + IG
Sbjct: 205 TGTSLITGPSGDIKQLQNYIG 225

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score =  148 bits (376), Expect = 1e-41
 Identities = 65/162 (40%), Positives = 107/162 (66%), Gaps = 8/162 (4%)

Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   ++ F+LA+FDG++G+G+ + A+G   PV+DN++ QG++ E+VFS +
Sbjct: 91  IPVTQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVY 150

Query: 109 LNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCA 168
            +RD     GGEIV GG DP+H++G   Y+  +K G+WQ ++  + +G+ ST +CE GC 
Sbjct: 151 YSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGS-STLLCEDGCT 209

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIG-----GEGVVSAECKLV 205
           A+VD+G S ++GPT  ++++  A+G     G+ VV   C  V
Sbjct: 210 AVVDTGASFISGPTSSISKLMEALGAKERLGDYVVK--CNEV 249

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score =  142 bits (361), Expect = 2e-39
 Identities = 68/159 (42%), Positives = 93/159 (58%), Gaps = 8/159 (5%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F EAT E  L F   +FDGI+GL +  I+V   VP + NM+ QGL+ E VFSF+L   
Sbjct: 96  QDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLG-- 153

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              E+GGE  FGG+D   F GK T++PV +K YW+ EL  I +G++     E   AAI D
Sbjct: 154 SSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDE-ELELENTGAAI-D 211

Query: 173 SGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVS 207
           +GTSL+A P+ +   +N  IG +    G  + +C  V S
Sbjct: 212 TGTSLIALPSDLAEMLNAEIGAKKSWNGQYTVDCSKVDS 250

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score =  140 bits (354), Expect = 1e-38
 Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 1/143 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F  +  E    F+ A+FDGI+GL +  I+ G A  V   M++Q L+   +FSF+L+  
Sbjct: 89  QEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQ 148

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              ++GGE+VFGGVD   + G+  + PVT + YWQ  +    I  Q+TG C  GC AIVD
Sbjct: 149 -QGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVD 207

Query: 173 SGTSLLAGPTPVVTEINHAIGGE 195
           +GTSLL  P  V++ +  +IG +
Sbjct: 208 TGTSLLTAPQQVMSTLMQSIGAQ 230

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score =  134 bits (340), Expect = 2e-36
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 295 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP 354
           ++P   GE +IDC++IPT+P +SF++G K++ L+ E YILK  +    +C+SGFM  D+P
Sbjct: 234 AVPLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIP 293

Query: 355 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386
           PP GPLWILGDVF+G Y+TVFD    R+GFA+
Sbjct: 294 PPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score =  126 bits (319), Expect = 2e-33
 Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 252 ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIP 311
           ++VS G+   CS    A+      L      E  +  +N    + P   GE +++C  IP
Sbjct: 197 DSVSVGEGEFCSGGCQAIADTGTSLIAGPVDE--IEKLNNAIGAKPIIGGEYMVNCSAIP 254

Query: 312 TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 371
           ++P+++F +G K F+L+ + Y+LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y
Sbjct: 255 SLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKY 314

Query: 372 HTVFDSGKLRIGFAE 386
           +T FD G  R+GFA 
Sbjct: 315 YTEFDLGNNRVGFAT 329

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score =  105 bits (264), Expect = 9e-26
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 297 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 356
            +  G  ++DCD I ++P+V+F IG     + P  Y+L+   G +  C+SGF       P
Sbjct: 230 LSEYGGYVVDCDSISSLPDVTFFIGGAKITVPPSDYVLQPSSGGSSTCLSGFQ----SSP 285

Query: 357 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            GPLWILGDVF+   + VFD    RIGFA A
Sbjct: 286 GGPLWILGDVFLRSAYVVFDRDNNRIGFAPA 316

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score =  104 bits (260), Expect = 3e-25
 Identities = 42/85 (49%), Positives = 55/85 (64%)

Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
           GE  +DC  +  MP+V+FTI    ++LSP+ Y L+        C SGF   D+PPP GPL
Sbjct: 231 GEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPL 290

Query: 361 WILGDVFMGVYHTVFDSGKLRIGFA 385
           WILGDVF+  Y++VFD G  R+GFA
Sbjct: 291 WILGDVFIRQYYSVFDRGNNRVGFA 315

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score =  102 bits (255), Expect = 9e-24
 Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 7/120 (5%)

Query: 71  FDGIIGLGFREIAVGD---AVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVD 127
           FDG++GLGF +    +   A+P+ DN+ +Q L+   +FSF++++D    + G I FG  D
Sbjct: 229 FDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKD--LNQPGSISFGSAD 286

Query: 128 PKH-FKG-KHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVV 185
           PK+  +G K  + PV    YW+ E+ DILI  +S G C+  C A +D+G+SL+ GP+ V+
Sbjct: 287 PKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVI 346

Length = 482

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score = 95.2 bits (237), Expect = 5e-22
 Identities = 36/87 (41%), Positives = 56/87 (64%)

Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
           G+ ++ C+ +PT+P++SF +G K + LS   Y+L+  +   ++C   F A D+PPP GPL
Sbjct: 240 GDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPL 299

Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAEA 387
           W+LG  F+  ++T FD    RIGFA A
Sbjct: 300 WVLGATFIRKFYTEFDRQNNRIGFALA 326

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score = 89.8 bits (223), Expect = 4e-20
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
           G+  +DC ++ ++P+++F      F L P  Y L+    ++  CIS F   D P P GPL
Sbjct: 239 GQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLE----VSGSCISAFTGMDFPEPVGPL 294

Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAE 386
            I+GD F+  Y++V+D G   +G A+
Sbjct: 295 AIVGDAFLRKYYSVYDLGNNAVGLAK 320

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 12/109 (11%)

Query: 287 SYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI----GDKI-FNLSPEQYILKTG--EG 339
           S IN L + +P  + E   DC    ++P +SF +    G KI F++ PE Y+++ G  E 
Sbjct: 344 SVINPLLEKIP--LEE---DCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEE 398

Query: 340 IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
               C+ G +  D+P PRGPL++LG+ F+  Y+++FD   + +G   A 
Sbjct: 399 QEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447

Length = 482

>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 19/138 (13%)

Query: 70  RFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL-------NRDPDAEEGGE 120
            ++GI+GL + E+A  D+   P +D++V+Q  +  +VFS  +       N       GG 
Sbjct: 104 NWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNGSASGTVGGS 162

Query: 121 IVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGC------AAIVDSG 174
           +V GG+DP  +KG   Y P+ ++ Y++  +  + +G QS  +    C       AIVDSG
Sbjct: 163 MVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNL---DCKEYNYDKAIVDSG 219

Query: 175 TSLLAGPTPVVTEINHAI 192
           T+ L  P  V      AI
Sbjct: 220 TTNLRLPVKVFNAAVDAI 237

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 364

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score = 74.8 bits (184), Expect = 5e-15
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
           N  GE +++C  I +MP+V FTI    + L P  YIL+        C SGF +  L    
Sbjct: 237 NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQDQGS----CTSGFQSMGL---- 288

Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFA 385
           G LWILGDVF+  Y++VFD    ++G A
Sbjct: 289 GELWILGDVFIRQYYSVFDRANNKVGLA 316

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score = 74.2 bits (182), Expect = 8e-15
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRG-P 359
           G+ +++C+ I  +P ++FTI    F L P  YIL+        C  G     LP   G P
Sbjct: 235 GQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290

Query: 360 LWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           LWILGDVF+  Y++V+D G  ++GFA A
Sbjct: 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 55  FIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           FIE T        +  + FDGI GLG++++++G   P    +  Q  + + VF+F+L   
Sbjct: 226 FIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL--P 283

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P+ +  G +  GG++ + ++G  TY  +    YWQ +L D+  GN    V       IVD
Sbjct: 284 PEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDL-DVHFGN----VSSEKANVIVD 338

Query: 173 SGTSLLAGPT 182
           SGTS++  PT
Sbjct: 339 SGTSVITVPT 348

Length = 453

>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 73  GIIGLGFREI-AVGDAVPVWDN----MVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVD 127
           G++G+G     A       + N    + +QGL+ +  +S +LN D DA  G  I+FGGVD
Sbjct: 74  GVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLN-DLDASTG-SILFGGVD 131

Query: 128 PKHFKGKHTYVPVTKKGYW----QFE--LGDILIGNQS--TGVCEGGCAAIVDSGTSLLA 179
              + G    +P+          +    L  I +   S  T +      A++DSGT+L  
Sbjct: 132 TAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTY 191

Query: 180 GPTPVVTEINHAIGG 194
            P+ +V  I   +G 
Sbjct: 192 LPSDIVDAIAKQLGA 206

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). The overall structure of Sap protein conforms to the classical aspartic proteinase fold typified by pepsin. SAP is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 295

>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional

 Score = 66.6 bits (162), Expect = 6e-12
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 11/131 (8%)

Query: 55  FIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN-R 111
           FIE T    L   +  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L   
Sbjct: 225 FIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVH 284

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           D  A   G +  GG++ K ++G  TY  +    YWQ +L D+  G Q+          IV
Sbjct: 285 DVHA---GYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQTMQKAN----VIV 336

Query: 172 DSGTSLLAGPT 182
           DSGT+ +  P+
Sbjct: 337 DSGTTTITAPS 347

Length = 450

>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREI-AVGD--AVPVWDNMVEQGLVSEEVFSFWL 109
           Q    AT   +  F     DG++GL F  I  V        ++N +        +F+  L
Sbjct: 88  QAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADL 145

Query: 110 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCA 168
            +       G   FG +D   +KG+ ++ PV    G+WQF      +G  +      G +
Sbjct: 146 RKA----APGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAP-WSRSGFS 200

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGG 194
           AI D+GT+L+  P  +V      + G
Sbjct: 201 AIADTGTTLILLPDAIVEAYYSQVPG 226

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-site cleft capable of interacting with multiple residues of a substrate. Although members of the aspartic protease family of enzymes have very similar three-dimensional structures and catalytic mechanisms, each has unique substrate specificity. The members of this family has an optimal acidic pH (5.5) and cleaves protein substrates with similar specificity to that of porcine pepsin A, preferring hydrophobic residues at P1 and P1' in the cleave site. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 278

>gnl|CDD|112314 pfam03489, SapB_2, Saposin-like type B, region 2

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 199 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 233
           S +CK  V QYG LI DLLVSGL P++VC Q+GLC
Sbjct: 1   SDQCKQFVDQYGPLIIDLLVSGLDPKEVCSQLGLC 35

Length = 35

>gnl|CDD|191220 pfam05184, SapB_1, Saposin-like type B, region 1

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 297
             +C  CE  V  V+  LK  +T+E+++  + ++CD LP
Sbjct: 1   GDLCDLCEFLVKEVEKLLKDNKTEEEIIEALEKVCDLLP 39

Length = 39

>gnl|CDD|214797 smart00741, SapB, Saposin (B) Domains

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 233
           +S +CK  V QYG  I DLL  GL P+ VCQ++GLC
Sbjct: 41  LSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present. Length = 76

>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 311 PTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGV 370
             +P + F   +K++ L PE Y+    +  + +C+   +  DL       +ILGD FM  
Sbjct: 376 TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNT---FILGDPFMRK 432

Query: 371 YHTVFDSGKLRIGFAEA 387
           Y TVFD     +GFA A
Sbjct: 433 YFTVFDYDNHTVGFALA 449

Length = 453

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 42/103 (40%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
           + +L  +     ++ +  G   +DC    T+P+++FT                       
Sbjct: 222 DAILKALG---AAVSSSDGGYGVDCSPCDTLPDITFTF---------------------- 256

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 385
                            LWILGDVF+  Y+TVFD    RIGFA
Sbjct: 257 -----------------LWILGDVFLRNYYTVFDLDNNRIGFA 282

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 21/132 (15%)

Query: 59  TREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV--SEEVFSFWLNRDPDAE 116
           T E +L FL  +  GI+GL       G   P+   +  +      +++FS  L+ D    
Sbjct: 119 THETNL-FLTQQATGILGLS-LTKNNGLPTPI-ILLFTKRPKLKKDKIFSICLSED---- 171

Query: 117 EGGEIVFGGVDPKHFKG----------KHTYVPVTKKGYWQFELGDILIGNQSTGVC-EG 165
            GGE+  GG D  +             K  + P+T+K Y+  +L  + +   ++      
Sbjct: 172 -GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230

Query: 166 GCAAIVDSGTSL 177
           G   +VDSG++L
Sbjct: 231 GLGMLVDSGSTL 242

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. There are four types of plasmepsins, closely related but varying in the specificity of cleavage site. The name plasmepsin may come from plasmodium (the organism) and pepsin (a common aspartic acid protease with similar molecular structure). This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
           +  CD    MP + F   +  + L PE Y+    +    +C+   +  D+       +IL
Sbjct: 369 VTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDID---DNTFIL 424

Query: 364 GDVFMGVYHTVFDSGKLRIGFAEA 387
           GD FM  Y TVFD  K  +GFA A
Sbjct: 425 GDPFMRKYFTVFDYDKESVGFAIA 448

Length = 450

>gnl|CDD|214797 smart00741, SapB, Saposin (B) Domains

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 302
           +C  CE  V  ++N LK  +T+E++   + ++C  LP  + +
Sbjct: 2   LCELCEFVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSD 43

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	100.0
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	100.0
PTZ00165	482	aspartyl protease; Provisional	100.0
cd05487	326	renin_like Renin stimulates production of angioten	100.0
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	100.0
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	100.0
cd05477	318	gastricsin Gastricsins, asparate proteases produce	100.0
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	100.0
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	100.0
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	100.0
PTZ00147	453	plasmepsin-1; Provisional	100.0
PTZ00013	450	plasmepsin 4 (PM4); Provisional	100.0
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	100.0
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	100.0
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	100.0
cd05473	364	beta_secretase_like Beta-secretase, aspartic-acid	100.0
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	100.0
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	100.0
KOG1339	398	consensus Aspartyl protease [Posttranslational mod	100.0
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	100.0
cd05489	362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	100.0
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	100.0
PLN03146	431	aspartyl protease family protein; Provisional	99.96
PF14541	161	TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D	99.71
PF14543	164	TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A	98.51
PF03489	35	SapB_2: Saposin-like type B, region 2; InterPro: I	98.11
PF05184	39	SapB_1: Saposin-like type B, region 1; InterPro: I	97.88
cd05470	109	pepsin_retropepsin_like Cellular and retroviral pe	97.61
KOG1340	218	consensus Prosaposin [Lipid transport and metaboli	97.39
smart00741	76	SapB Saposin (B) Domains. Present in multiple copi	93.89
smart00741	76	SapB Saposin (B) Domains. Present in multiple copi	93.24
KOG1340	218	consensus Prosaposin [Lipid transport and metaboli	92.37
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	91.92
PF08284	135	RVP_2: Retroviral aspartyl protease; InterPro: IPR	89.89
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	85.0
PF13650	90	Asp_protease_2: Aspartyl protease	83.69

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=100.00  E-value=1.7e-45  Score=362.28  Aligned_cols=259  Identities=46%  Similarity=0.886  Sum_probs=226.0

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.++|++++|+|+++   +.++++|.||+++.+++..|....+|||||||++.++....+|++++|++||+|++
T Consensus        67 ~i~Yg~G~~~G~~~~D~v~~g---~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~  143 (325)
T cd05490          67 AIQYGSGSLSGYLSQDTVSIG---GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQ  143 (325)
T ss_pred             EEEECCcEEEEEEeeeEEEEC---CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCC
Confidence            578988999999999999999   89999999999998766556666789999999999887778899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.++++....|+|+|||+|++++.|++.|+|+.+..||.|++++|+|++... .+..+..++|||||+++++|+
T Consensus       144 ~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~  222 (325)
T cd05490         144 NVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPV  222 (325)
T ss_pred             CEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCH
Confidence            9999999876444457999999999999999999999998899999999999988743 234567899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++.                                                                   
T Consensus       223 ~~~~~l~~~~~~~-------------------------------------------------------------------  235 (325)
T cd05490         223 EEVRALQKAIGAV-------------------------------------------------------------------  235 (325)
T ss_pred             HHHHHHHHHhCCc-------------------------------------------------------------------
Confidence            9999999988542                                                                   


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                        +...+.|.++|+....+|+|+|+|+|+.++|+|++|+++.......
T Consensus       236 ----------------------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~  281 (325)
T cd05490         236 ----------------------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTT  281 (325)
T ss_pred             ----------------------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCC
Confidence                                              1123458899998888999999999999999999999976544456


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                      .|++.|+..+.+.+.++.||||++|||++|+|||++++|||||+
T Consensus       282 ~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~  325 (325)
T cd05490         282 ICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK  325 (325)
T ss_pred             EEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence            89999988775544557899999999999999999999999996

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=100.00  E-value=1.4e-45  Score=361.71  Aligned_cols=258  Identities=41%  Similarity=0.770  Sum_probs=225.5

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|.|+.+.++|.++.|+|+++   ++++++|.||++..+.+..|....+|||||||++.++..+..|++++|++||+|++
T Consensus        59 ~i~Yg~g~~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~  135 (316)
T cd05486          59 SIQYGTGSLTGIIGIDQVTVE---GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVEL  135 (316)
T ss_pred             EEEeCCcEEEEEeeecEEEEC---CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCC
Confidence            688988889999999999999   89999999999988766667667789999999999887778889999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.++++....|+|+|||+|++++.|++.|+|+.+.+||.+++++|+|+++.+. +..+..++|||||+++++|+
T Consensus       136 ~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~  214 (316)
T cd05486         136 PMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPS  214 (316)
T ss_pred             CEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCH
Confidence            99999999765444589999999999999999999999999999999999999998763 33567899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+.+++.                                                                   
T Consensus       215 ~~~~~l~~~~~~~-------------------------------------------------------------------  227 (316)
T cd05486         215 GDIKQLQNYIGAT-------------------------------------------------------------------  227 (316)
T ss_pred             HHHHHHHHHhCCc-------------------------------------------------------------------
Confidence            9999998877542                                                                   


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|+....+|+|+|+|+|+.++|+|++|++........
T Consensus       228 -----------------------------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~  272 (316)
T cd05486         228 -----------------------------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGG  272 (316)
T ss_pred             -----------------------------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCC
Confidence                                               112458899998888999999999999999999999875333456


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                      .|++.|+..+..+..++.||||++|||++|+|||.+++|||||+
T Consensus       273 ~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~  316 (316)
T cd05486         273 YCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP  316 (316)
T ss_pred             EEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence            89999988765444556899999999999999999999999996

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>PTZ00165 aspartyl protease; Provisional

Probab=100.00  E-value=1.1e-44  Score=375.94  Aligned_cols=253  Identities=33%  Similarity=0.627  Sum_probs=223.8

Q ss_pred             ceEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccc---cCCCCchhhhhhhcC
Q 016530           22 SRIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIA---VGDAVPVWDNMVEQG   98 (388)
Q Consensus        22 ~~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s---~~~~~~~~~~L~~qg   98 (388)
                      -+|+|+.+...|.++.|+|+++   ++++++|.||+++.+++..|...++|||||||++.++   ..+.+|++++|++||
T Consensus       183 ~~i~YGsGs~~G~l~~DtV~ig---~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qg  259 (482)
T PTZ00165        183 TYIQYGTGECVLALGKDTVKIG---GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQN  259 (482)
T ss_pred             EEEEeCCCcEEEEEEEEEEEEC---CEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcC
Confidence            3699999999999999999999   8999999999999887767877789999999999873   345789999999999


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCce--ecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCc
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF--KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTS  176 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~--~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs  176 (388)
                      +|++++||+||.++++  .+|+|+|||+|++++  .+++.|+|+.+..||.+.+++|+++++.+..|..++.+++||||+
T Consensus       260 li~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTS  337 (482)
T PTZ00165        260 LLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSS  337 (482)
T ss_pred             CcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCc
Confidence            9999999999987543  379999999999877  578999999999999999999999998877666788999999999


Q ss_pred             CcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccC
Q 016530          177 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA  256 (388)
Q Consensus       177 ~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  256 (388)
                      ++++|++++++|.+++++.                                                             
T Consensus       338 li~lP~~~~~~i~~~i~~~-------------------------------------------------------------  356 (482)
T PTZ00165        338 LITGPSSVINPLLEKIPLE-------------------------------------------------------------  356 (482)
T ss_pred             cEeCCHHHHHHHHHHcCCc-------------------------------------------------------------
Confidence            9999999999999988542                                                             


Q ss_pred             CCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCE-----EEEeCccc
Q 016530          257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDK-----IFNLSPEQ  331 (388)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~-----~~~l~p~~  331 (388)
                                                                      .+|+...++|+|+|+|+|.     .++++|++
T Consensus       357 ------------------------------------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~d  388 (482)
T PTZ00165        357 ------------------------------------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPED  388 (482)
T ss_pred             ------------------------------------------------ccccccccCCceEEEECCCCCceEEEEEchHH
Confidence                                                            2788778899999999864     89999999


Q ss_pred             ceeeec--cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          332 YILKTG--EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       332 yi~~~~--~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      |+++..  ....+.|+++|+..|.+.+.++.||||++|||+||+|||.+++|||||+++
T Consensus       389 Yi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~  447 (482)
T PTZ00165        389 YVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK  447 (482)
T ss_pred             eeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence            999752  234568999999988776677899999999999999999999999999874

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=100.00  E-value=4.7e-44  Score=352.70  Aligned_cols=258  Identities=38%  Similarity=0.801  Sum_probs=225.2

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .++|+.+.++|.+++|+|+++   ++.+. |.||+++...+..|.....|||||||+++.+..+..|++++|++||.|++
T Consensus        69 ~~~Yg~g~~~G~~~~D~v~~g---~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~  144 (326)
T cd05487          69 TIHYASGTVKGFLSQDIVTVG---GIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKE  144 (326)
T ss_pred             EEEeCCceEEEEEeeeEEEEC---CEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCC
Confidence            578999999999999999999   78774 88999987654455556789999999998877777899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.++++....|+|+|||+|++++.|+++|+|+.+.++|.+++++++++++.+. +..+..++|||||+++++|+
T Consensus       145 ~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~  223 (326)
T cd05487         145 DVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPT  223 (326)
T ss_pred             CEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcH
Confidence            99999999865444689999999999999999999999999999999999999998764 34567899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      ++++++++++++..                                                                  
T Consensus       224 ~~~~~l~~~~~~~~------------------------------------------------------------------  237 (326)
T cd05487         224 SSISKLMEALGAKE------------------------------------------------------------------  237 (326)
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999999886531                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                          ..+.|.+||+...++|+|+|+|++..++|+|++|+++..+..+.
T Consensus       238 ------------------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~  281 (326)
T cd05487         238 ------------------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDK  281 (326)
T ss_pred             ------------------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCC
Confidence                                                13458899998888999999999999999999999987655567


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      .|++.|+..+.+.+.++.||||++|||++|+|||++++|||||++
T Consensus       282 ~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a  326 (326)
T cd05487         282 LCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA  326 (326)
T ss_pred             EEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence            899999987654445578999999999999999999999999986

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=100.00  E-value=2.5e-44  Score=353.63  Aligned_cols=248  Identities=71%  Similarity=1.231  Sum_probs=218.7

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+-++|.++.|+|+++   ++++++|.||+++.+.+..|....+|||||||++.++..+..|++++|++||+|++
T Consensus        70 ~i~Yg~G~~~G~~~~D~v~ig---~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~  146 (317)
T cd06098          70 SIQYGTGSISGFFSQDSVTVG---DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKE  146 (317)
T ss_pred             EEEcCCceEEEEEEeeEEEEC---CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCC
Confidence            688988889999999999999   89999999999998776667777889999999998887777889999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.+.++....|+|+|||+|++++.|+++|+|+...+||.+.+++|+|+++.+..+.....++|||||+++++|+
T Consensus       147 ~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~  226 (317)
T cd06098         147 PVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT  226 (317)
T ss_pred             CEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence            99999998764434589999999999999999999999988999999999999999876666678899999999999998


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      ++++++.                                                                         
T Consensus       227 ~~~~~i~-------------------------------------------------------------------------  233 (317)
T cd06098         227 TIVTQIN-------------------------------------------------------------------------  233 (317)
T ss_pred             HHHHhhh-------------------------------------------------------------------------
Confidence            8655432                                                                         


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                              +.++|+...++|+|+|+|+|+.++|+|++|+++..+....
T Consensus       234 ----------------------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~  273 (317)
T cd06098         234 ----------------------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAA  273 (317)
T ss_pred             ----------------------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCC
Confidence                                                    2368887778999999999999999999999987655556


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                      .|++.|+..+.+.+.++.||||++|||++|+|||++++|||||+
T Consensus       274 ~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~  317 (317)
T cd06098         274 QCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE  317 (317)
T ss_pred             EEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence            89999988765544557899999999999999999999999996

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=100.00  E-value=1.5e-43  Score=350.09  Aligned_cols=258  Identities=47%  Similarity=0.887  Sum_probs=226.1

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|.|+.+.++|.+++|+|+++   +.++++|.||++.++.+..|.....|||||||+++++.....|++.+|++||+|++
T Consensus        72 ~i~Y~~g~~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~  148 (329)
T cd05485          72 AIQYGSGSLSGFLSTDTVSVG---GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDA  148 (329)
T ss_pred             EEEECCceEEEEEecCcEEEC---CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCC
Confidence            678888889999999999999   89999999999988776666666789999999998887677889999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.+.++....|+|+|||+|++++.|+++|+|+.+.++|.+++++++++++...  ..+..++|||||+++++|+
T Consensus       149 ~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~  226 (329)
T cd05485         149 PVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPV  226 (329)
T ss_pred             CEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCH
Confidence            99999999765444579999999999999999999999999999999999999998763  4566899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++..                                                                  
T Consensus       227 ~~~~~l~~~~~~~~------------------------------------------------------------------  240 (329)
T cd05485         227 DEIEKLNNAIGAKP------------------------------------------------------------------  240 (329)
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999998886431                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|+...++|+|+|+|+++.+.|+|++|+++.......
T Consensus       241 -----------------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~  285 (329)
T cd05485         241 -----------------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQT  285 (329)
T ss_pred             -----------------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCC
Confidence                                               012458899998888999999999999999999999987655567


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                      +|++.|+..+.++..++.||||++|||++|+|||++++|||||.
T Consensus       286 ~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~  329 (329)
T cd05485         286 ICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT  329 (329)
T ss_pred             EEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence            89999997765444556899999999999999999999999984

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=100.00  E-value=5.6e-43  Score=343.38  Aligned_cols=256  Identities=38%  Similarity=0.721  Sum_probs=223.1

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .++|+.+.++|+++.|+|+++   ++++++|.||+++...+..|.....|||||||+++.+....++++++|+++|+|++
T Consensus        62 ~~~Yg~Gs~~G~~~~D~i~~g---~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~  138 (318)
T cd05477          62 SLQYGSGSLTGIFGYDTVTVQ---GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQA  138 (318)
T ss_pred             EEEECCcEEEEEEEeeEEEEC---CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCC
Confidence            577888888999999999999   89999999999998766555556789999999998887778899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.++. ....|.|+|||+|++++.|++.|+|+.+..+|.+++++|+++++.+..+..+..++|||||+++++|+
T Consensus       139 ~~FS~~L~~~~-~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~  217 (318)
T cd05477         139 PIFSFYLSGQQ-GQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQ  217 (318)
T ss_pred             CEEEEEEcCCC-CCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCH
Confidence            99999999753 22479999999999999999999999999999999999999999876555667899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|++.+++..                                                                  
T Consensus       218 ~~~~~l~~~~~~~~------------------------------------------------------------------  231 (318)
T cd05477         218 QVMSTLMQSIGAQQ------------------------------------------------------------------  231 (318)
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999999886430                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|+...++|+|+|.|+|+++.|+|++|+.+.    ..
T Consensus       232 -----------------------------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~  272 (318)
T cd05477         232 -----------------------------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NG  272 (318)
T ss_pred             -----------------------------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CC
Confidence                                               123458899998888999999999999999999999864    35


Q ss_pred             ceeEeeEeccCCCCCC-CceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          343 VCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~-~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      .|++.|++.+.+...+ +.||||++|||++|+|||++++|||||++
T Consensus       273 ~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~  318 (318)
T cd05477         273 YCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA  318 (318)
T ss_pred             eEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence            8999998765433223 57999999999999999999999999986

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=100.00  E-value=1.3e-42  Score=340.93  Aligned_cols=249  Identities=39%  Similarity=0.714  Sum_probs=217.0

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .+.|+.+.++|.++.|+|+++   +++++++.||+++.+.+..+.....|||||||+++++..+..|++++|++||+|++
T Consensus        69 ~~~yg~gs~~G~~~~D~v~ig---~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~  145 (317)
T cd05478          69 SIQYGTGSMTGILGYDTVQVG---GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQ  145 (317)
T ss_pred             EEEECCceEEEEEeeeEEEEC---CEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCC
Confidence            477888888999999999999   89999999999988765433344689999999998887777889999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.++++  .+|+|+|||+|++++.|+++|+|+....||.+.+++++||++.+.. ..+..+++||||+++++|+
T Consensus       146 ~~FS~~L~~~~~--~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~-~~~~~~iiDTGts~~~lp~  222 (317)
T cd05478         146 DLFSVYLSSNGQ--QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVAC-SGGCQAIVDTGTSLLVGPS  222 (317)
T ss_pred             CEEEEEeCCCCC--CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEcc-CCCCEEEECCCchhhhCCH
Confidence            999999998642  4799999999999999999999999999999999999999998752 3456899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +.+++|.+++++..                                                                  
T Consensus       223 ~~~~~l~~~~~~~~------------------------------------------------------------------  236 (317)
T cd05478         223 SDIANIQSDIGASQ------------------------------------------------------------------  236 (317)
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999999885430                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|+...++|+|+|+|+|+.++|+|++|+.+.    ..
T Consensus       237 -----------------------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~  277 (317)
T cd05478         237 -----------------------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QG  277 (317)
T ss_pred             -----------------------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CC
Confidence                                               113458899998888999999999999999999999864    46


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                      .|++.|+..+    ..+.||||++|||++|+|||++++|||||+
T Consensus       278 ~C~~~~~~~~----~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~  317 (317)
T cd05478         278 SCTSGFQSMG----LGELWILGDVFIRQYYSVFDRANNKVGLAP  317 (317)
T ss_pred             EEeEEEEeCC----CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence            8999998643    246799999999999999999999999996

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=100.00  E-value=2.3e-42  Score=339.88  Aligned_cols=252  Identities=37%  Similarity=0.694  Sum_probs=219.5

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .+.|..+.++|.++.|+|+++   ++++++|.|++++.+.+..|.....|||||||++..+.....+.+.+|++||+|++
T Consensus        69 ~~~y~~g~~~G~~~~D~v~ig---~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~  145 (320)
T cd05488          69 KIQYGSGSLEGFVSQDTLSIG---DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDE  145 (320)
T ss_pred             EEEECCceEEEEEEEeEEEEC---CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCC
Confidence            667888889999999999999   89999999999988766555556789999999998887666788899999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.+..  ...|.|+|||+|++++.|+++|+|+...+||.+++++|++|++.+..  .+..++|||||+++++|+
T Consensus       146 ~~FS~~L~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~  221 (320)
T cd05488         146 PVFSFYLGSSE--EDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPS  221 (320)
T ss_pred             CEEEEEecCCC--CCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCH
Confidence            99999999863  24899999999999999999999999889999999999999987753  456799999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      ++++++.+++++..                                                                  
T Consensus       222 ~~~~~l~~~~~~~~------------------------------------------------------------------  235 (320)
T cd05488         222 DLAEMLNAEIGAKK------------------------------------------------------------------  235 (320)
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999998885430                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|+....+|+|+|.|+|+++.|+|++|+.+.    .+
T Consensus       236 -----------------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g  276 (320)
T cd05488         236 -----------------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SG  276 (320)
T ss_pred             -----------------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CC
Confidence                                               123458899998888999999999999999999999853    25


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                      .|++.+...+.+...++.||||++|||++|+|||.+++|||||+
T Consensus       277 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~  320 (320)
T cd05488         277 SCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK  320 (320)
T ss_pred             eEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence            79999988765444456899999999999999999999999996

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=100.00  E-value=1.2e-40  Score=322.47  Aligned_cols=256  Identities=33%  Similarity=0.563  Sum_probs=225.4

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCC-CCchhhhhhhcCCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD-AVPVWDNMVEQGLVS  101 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~-~~~~~~~L~~qg~i~  101 (388)
                      .+.|..+.++|.+..|+|+++   +++++++.||++....+..+.....|||||||++..+... .++++++|++||+|+
T Consensus        61 ~~~y~~g~~~G~~~~D~v~ig---~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~  137 (317)
T PF00026_consen   61 SISYGDGSVSGNLVSDTVSIG---GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLIS  137 (317)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSS
T ss_pred             eeeccCcccccccccceEeee---eccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcccc
Confidence            677888889999999999999   8999999999999976666667788999999998877664 789999999999999


Q ss_pred             cceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccC
Q 016530          102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP  181 (388)
Q Consensus       102 ~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP  181 (388)
                      +++||++|++.+  ...|.|+|||+|+++++|+++|+|+...++|.+.+.+|.+++... ....+..+++|||++++++|
T Consensus       138 ~~~fsl~l~~~~--~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp  214 (317)
T PF00026_consen  138 SNVFSLYLNPSD--SQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLP  214 (317)
T ss_dssp             SSEEEEEEESTT--SSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEE
T ss_pred             ccccceeeeecc--cccchheeeccccccccCceeccCccccccccccccccccccccc-ccccceeeeccccccccccc
Confidence            999999999875  357999999999999999999999999999999999999999932 23456789999999999999


Q ss_pred             HHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcc
Q 016530          182 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV  261 (388)
Q Consensus       182 ~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (388)
                      +++++.|++.+++..                                                                 
T Consensus       215 ~~~~~~i~~~l~~~~-----------------------------------------------------------------  229 (317)
T PF00026_consen  215 RSIFDAIIKALGGSY-----------------------------------------------------------------  229 (317)
T ss_dssp             HHHHHHHHHHHTTEE-----------------------------------------------------------------
T ss_pred             chhhHHHHhhhcccc-----------------------------------------------------------------
Confidence            999999999997652                                                                 


Q ss_pred             cchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcc
Q 016530          262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA  341 (388)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~  341 (388)
                                                           ..+.|.++|+....+|.++|.|++.+++|+|++|+.+......
T Consensus       230 -------------------------------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~  272 (317)
T PF00026_consen  230 -------------------------------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNG  272 (317)
T ss_dssp             -------------------------------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTS
T ss_pred             -------------------------------------cceeEEEecccccccceEEEeeCCEEEEecchHhccccccccc
Confidence                                                 0155889999888899999999999999999999998876655


Q ss_pred             cceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       342 ~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      ..|++.|...+. ....+.||||.+|||++|+|||++++|||||+|
T Consensus       273 ~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a  317 (317)
T PF00026_consen  273 GYCYLGIQPMDS-SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA  317 (317)
T ss_dssp             SEEEESEEEESS-TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             ceeEeeeecccc-cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence            689999998664 344578999999999999999999999999986

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>PTZ00147 plasmepsin-1; Provisional

Probab=100.00  E-value=1.6e-39  Score=335.11  Aligned_cols=251  Identities=27%  Similarity=0.503  Sum_probs=211.5

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCc--cccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~--~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i  100 (388)
                      .|+|+.+.++|.++.|+|+++   +++++ +.|+++....+.  .+....+|||||||+++++.....|++.+|++||+|
T Consensus       198 ~i~Yg~GsvsG~~~~DtVtiG---~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I  273 (453)
T PTZ00147        198 EMNYVSGTVSGFFSKDLVTIG---NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKI  273 (453)
T ss_pred             EEEeCCCCEEEEEEEEEEEEC---CEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCC
Confidence            678999999999999999999   88998 568888765442  234457899999999988877788999999999999


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++++||+||++.+.  .+|.|+|||+|++++.|++.|+|+.+..||.+.++ +.+++..    .....+++||||+++++
T Consensus       274 ~~~vFS~~L~~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~l  346 (453)
T PTZ00147        274 EQAVFTFYLPPEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITV  346 (453)
T ss_pred             CccEEEEEecCCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcC
Confidence            99999999987532  47999999999999999999999998899999997 5777653    24567999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |+++++++.+++++..                                                                
T Consensus       347 P~~~~~ai~~~l~~~~----------------------------------------------------------------  362 (453)
T PTZ00147        347 PTEFLNKFVESLDVFK----------------------------------------------------------------  362 (453)
T ss_pred             CHHHHHHHHHHhCCee----------------------------------------------------------------
Confidence            9999999999885431                                                                


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCc
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI  340 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~  340 (388)
                                                          .+..+.|.++|+. ..+|+++|.++|..++|+|++|+.+..+..
T Consensus       363 ------------------------------------~~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~  405 (453)
T PTZ00147        363 ------------------------------------VPFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIG  405 (453)
T ss_pred             ------------------------------------cCCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCC
Confidence                                                0112447889986 579999999999999999999998654444


Q ss_pred             ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          341 AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       341 ~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ...|++.|++.+.   ..+.||||++|||++|+|||++++|||||+++
T Consensus       406 ~~~C~~~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~  450 (453)
T PTZ00147        406 SALCMLNIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK  450 (453)
T ss_pred             CcEEEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence            5689999987653   23579999999999999999999999999985

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=100.00  E-value=4e-39  Score=331.82  Aligned_cols=251  Identities=27%  Similarity=0.483  Sum_probs=209.5

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCC--ccccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGS--LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~--~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i  100 (388)
                      .|+|+.+.+.|.++.|+|+++   +++++ +.|+++....+  ..|....+|||||||++.++.....|++++|++||+|
T Consensus       197 ~i~YG~Gsv~G~~~~Dtv~iG---~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I  272 (450)
T PTZ00013        197 DITYGSGTVKGFFSKDLVTLG---HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKI  272 (450)
T ss_pred             EEEECCceEEEEEEEEEEEEC---CEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCc
Confidence            678999999999999999999   88887 57888765432  2244557899999999988877788999999999999


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++++||+||++.+  ...|.|+|||+|++++.|++.|+|+.+..||.++++ +.+|....    ....+++||||+++++
T Consensus       273 ~~~vFS~~L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~l  345 (450)
T PTZ00013        273 DNALFTFYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITA  345 (450)
T ss_pred             CCcEEEEEecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccC
Confidence            9999999998653  248999999999999999999999998999999997 66665432    3467999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |+++++++.+.+++..                                                                
T Consensus       346 P~~~~~~i~~~l~~~~----------------------------------------------------------------  361 (450)
T PTZ00013        346 PSEFLNKFFANLNVIK----------------------------------------------------------------  361 (450)
T ss_pred             CHHHHHHHHHHhCCee----------------------------------------------------------------
Confidence            9999999998886431                                                                


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCc
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI  340 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~  340 (388)
                                                          .+..+.|.++|+. ..+|+|+|.++|.+++|+|++|+.+.....
T Consensus       362 ------------------------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~  404 (450)
T PTZ00013        362 ------------------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVD  404 (450)
T ss_pred             ------------------------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCC
Confidence                                                0123457899985 578999999999999999999997644334


Q ss_pred             ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          341 AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       341 ~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ...|++.+.+.+.   ..+.||||++|||++|+|||++++|||||+++
T Consensus       405 ~~~C~~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~  449 (450)
T PTZ00013        405 DTLCMITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK  449 (450)
T ss_pred             CCeeEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence            4689999987542   23579999999999999999999999999985

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=100.00  E-value=4e-39  Score=310.96  Aligned_cols=247  Identities=22%  Similarity=0.314  Sum_probs=210.3

Q ss_pred             eEEeee-eEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc-----CCCCchhhhhhh
Q 016530           23 RIRCVL-VLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV-----GDAVPVWDNMVE   96 (388)
Q Consensus        23 ~~~~~~-~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~-----~~~~~~~~~L~~   96 (388)
                      .+.|+. +.+.|+++.|+|+++   +.+++++.||+++..       ...+||||||+++.+.     ...++++++|++
T Consensus        33 ~~~Y~~g~~~~G~~~~D~v~~g---~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~  102 (295)
T cd05474          33 SISYGDGTSASGTWGTDTVSIG---GATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKK  102 (295)
T ss_pred             EEEeccCCcEEEEEEEEEEEEC---CeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHH
Confidence            567777 689999999999999   889999999999873       2359999999998753     345679999999


Q ss_pred             cCCCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeeccc------ceeEEEEccEEEcCeeec--eecCCce
Q 016530           97 QGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK------GYWQFELGDILIGNQSTG--VCEGGCA  168 (388)
Q Consensus        97 qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~------~~w~v~l~~i~vgg~~~~--~~~~~~~  168 (388)
                      ||+|++++||+||.+.+  ...|.|+|||+|++++.|++.|+|+...      .+|.|.+++|+++++...  .......
T Consensus       103 ~g~i~~~~Fsl~l~~~~--~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~  180 (295)
T cd05474         103 QGLIKKNAYSLYLNDLD--ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLP  180 (295)
T ss_pred             CCcccceEEEEEeCCCC--CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCcc
Confidence            99999999999999853  2479999999999999999999999765      799999999999998753  2345678


Q ss_pred             EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016530          169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV  248 (388)
Q Consensus       169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~  248 (388)
                      ++|||||+++++|.+++++|.+++++..                                                    
T Consensus       181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~----------------------------------------------------  208 (295)
T cd05474         181 ALLDSGTTLTYLPSDIVDAIAKQLGATY----------------------------------------------------  208 (295)
T ss_pred             EEECCCCccEeCCHHHHHHHHHHhCCEE----------------------------------------------------
Confidence            9999999999999999999999996541                                                    


Q ss_pred             eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeC
Q 016530          249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLS  328 (388)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~  328 (388)
                                                                      ....+.|.++|....+ |+|+|+|+|.+++|+
T Consensus       209 ------------------------------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~  239 (295)
T cd05474         209 ------------------------------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVP  239 (295)
T ss_pred             ------------------------------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEE
Confidence                                                            0113457899998766 999999999999999


Q ss_pred             cccceeeecc--CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          329 PEQYILKTGE--GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       329 p~~yi~~~~~--~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      +++|+++...  .....|++.|++.+.     +.||||++|||++|++||.+++|||||+|
T Consensus       240 ~~~~~~~~~~~~~~~~~C~~~i~~~~~-----~~~iLG~~fl~~~y~vfD~~~~~ig~a~a  295 (295)
T cd05474         240 LSDLVLPASTDDGGDGACYLGIQPSTS-----DYNILGDTFLRSAYVVYDLDNNEISLAQA  295 (295)
T ss_pred             HHHhEeccccCCCCCCCeEEEEEeCCC-----CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence            9999987642  345789999986531     57999999999999999999999999986

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=100.00  E-value=3.1e-36  Score=290.45  Aligned_cols=214  Identities=26%  Similarity=0.404  Sum_probs=183.6

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC---CCCchhhhhhhcC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~---~~~~~~~~L~~qg   98 (388)
                      .|.|..+ .+.|+++.|+|+++   +.++++|.||+++.+.+..+....+|||||||++.++..   ..++++++|.+|+
T Consensus        60 ~i~Y~~G~~~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~  136 (278)
T cd06097          60 SISYGDGSSASGIVYTDTVSIG---GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL  136 (278)
T ss_pred             EEEeCCCCeEEEEEEEEEEEEC---CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence            6778777 48999999999999   899999999999987654566678899999999887642   4568999999996


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc-cceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~-~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                      .  +++||+||.+.    ..|+|+|||+|++++.|+++|+|+.+ ..||.+++++|+++++... ...+..++|||||++
T Consensus       137 ~--~~~Fs~~l~~~----~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~  209 (278)
T cd06097         137 D--APLFTADLRKA----APGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTL  209 (278)
T ss_pred             c--CceEEEEecCC----CCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCch
Confidence            5  79999999873    37999999999999999999999986 7999999999999998432 346788999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|.++++++.+++++..                                                             
T Consensus       210 ~~lP~~~~~~l~~~l~g~~-------------------------------------------------------------  228 (278)
T cd06097         210 ILLPDAIVEAYYSQVPGAY-------------------------------------------------------------  228 (278)
T ss_pred             hcCCHHHHHHHHHhCcCCc-------------------------------------------------------------
Confidence            9999999999999985330                                                             


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                            .....+.|.+||+..  +|+|+|.|                 
T Consensus       229 --------------------------------------~~~~~~~~~~~C~~~--~P~i~f~~-----------------  251 (278)
T cd06097         229 --------------------------------------YDSEYGGWVFPCDTT--LPDLSFAV-----------------  251 (278)
T ss_pred             --------------------------------------ccCCCCEEEEECCCC--CCCEEEEE-----------------
Confidence                                                  012346699999963  99999998                 


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                                            .||||++|||++|+|||++++|||||+
T Consensus       252 ----------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~  278 (278)
T cd06097         252 ----------------------FSILGDVFLKAQYVVFDVGGPKLGFAP  278 (278)
T ss_pred             ----------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence                                  489999999999999999999999996

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=100.00  E-value=4.8e-35  Score=284.61  Aligned_cols=251  Identities=20%  Similarity=0.293  Sum_probs=188.3

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeecccce-EeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCACLQ-IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~-~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i  100 (388)
                      .|+|+.+. ++|+++.|+|+++   +. .++++.||+++.+.+. |.  ..|||||||++.++      +..+|..+   
T Consensus        37 ~i~Yg~Gs~~~G~~~~D~v~ig---~~~~~~~~~Fg~~~~~~~~-~~--~~~GilGLg~~~~s------~~~ql~~~---  101 (299)
T cd05472          37 QVSYGDGSYTTGDLATDTLTLG---SSDVVPGFAFGCGHDNEGL-FG--GAAGLLGLGRGKLS------LPSQTASS---  101 (299)
T ss_pred             eeEeCCCceEEEEEEEEEEEeC---CCCccCCEEEECCccCCCc-cC--CCCEEEECCCCcch------HHHHhhHh---
Confidence            57787775 5899999999999   66 8999999999877543 32  67999999998765      34455443   


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeeccc----ceeEEEEccEEEcCeeecee---cCCceEEEcC
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVC---EGGCAAIVDS  173 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~---~~~~~aivDS  173 (388)
                      .+++||+||.+.. ...+|+|+|||+|++  .|++.|+|+...    .+|.|++++|+|+++.+...   ..+..+++||
T Consensus       102 ~~~~FS~~L~~~~-~~~~G~l~fGg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDS  178 (299)
T cd05472         102 YGGVFSYCLPDRS-SSSSGYLSFGAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDS  178 (299)
T ss_pred             hcCceEEEccCCC-CCCCceEEeCCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeC
Confidence            3589999998753 135899999999998  899999999753    69999999999999987642   2356799999


Q ss_pred             CCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeeccc
Q 016530          174 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN  253 (388)
Q Consensus       174 GTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~  253 (388)
                      ||+++++|++++++|.+++.+..          ..+            .+..                        +   
T Consensus       179 GTt~~~lp~~~~~~l~~~l~~~~----------~~~------------~~~~------------------------~---  209 (299)
T cd05472         179 GTVITRLPPSAYAALRDAFRAAM----------AAY------------PRAP------------------------G---  209 (299)
T ss_pred             CCcceecCHHHHHHHHHHHHHHh----------ccC------------CCCC------------------------C---
Confidence            99999999999999999885320          000            0000                        0   


Q ss_pred             ccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcccc
Q 016530          254 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQY  332 (388)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~~y  332 (388)
                                                   .    ..-..|.+         ++|.....+|+|+|+|+ +..++|+|++|
T Consensus       210 -----------------------------~----~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y  247 (299)
T cd05472         210 -----------------------------F----SILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGV  247 (299)
T ss_pred             -----------------------------C----CCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccE
Confidence                                         0    00001211         22333457999999997 89999999999


Q ss_pred             eeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          333 ILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       333 i~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      ++.... ....|+ .+...+   ..++.||||+.|||++|+|||++++|||||++
T Consensus       248 ~~~~~~-~~~~C~-~~~~~~---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~  297 (299)
T cd05472         248 LYPVDD-SSQVCL-AFAGTS---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG  297 (299)
T ss_pred             EEEecC-CCCEEE-EEeCCC---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence            984322 346797 454332   12457999999999999999999999999986

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

Probab=100.00  E-value=1.4e-34  Score=289.49  Aligned_cols=264  Identities=24%  Similarity=0.353  Sum_probs=194.7

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC--CCCchhhhhhhcCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg~i  100 (388)
                      +|+|+.+.+.|.++.|+|+++......+. +.|+.++...+..+.....|||||||++.++..  ...|++++|++|+.+
T Consensus        58 ~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~  136 (364)
T cd05473          58 TVPYTQGSWEGELGTDLVSIPKGPNVTFR-ANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI  136 (364)
T ss_pred             EEEECcceEEEEEEEEEEEECCCCccceE-EeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence            78899998999999999999821111221 223444433322122336799999999988742  467899999999997


Q ss_pred             CcceEEEEecCCC-------CCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecC---CceEE
Q 016530          101 SEEVFSFWLNRDP-------DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAI  170 (388)
Q Consensus       101 ~~~~FSl~L~~~~-------~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~---~~~ai  170 (388)
                       +++||+||+...       +....|.|+|||+|++++.|++.|+|+.+..+|.+.+.+|+|+++.+.....   ...++
T Consensus       137 -~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~i  215 (364)
T cd05473         137 -PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAI  215 (364)
T ss_pred             -ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEE
Confidence             679999986421       1234799999999999999999999999889999999999999988764221   23699


Q ss_pred             EcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeee
Q 016530          171 VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVE  250 (388)
Q Consensus       171 vDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~  250 (388)
                      |||||+++++|++++++|.+++++...                        .+                           
T Consensus       216 vDSGTs~~~lp~~~~~~l~~~l~~~~~------------------------~~---------------------------  244 (364)
T cd05473         216 VDSGTTNLRLPVKVFNAAVDAIKAASL------------------------IE---------------------------  244 (364)
T ss_pred             EeCCCcceeCCHHHHHHHHHHHHhhcc------------------------cc---------------------------
Confidence            999999999999999999999965410                        00                           


Q ss_pred             cccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCC-CCceeecCCCCC-----CCCcEEEEECC--
Q 016530          251 KENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVSFTIGD--  322 (388)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~-~~~~~v~C~~~~-----~lP~i~f~~gg--  322 (388)
                                                                  ..+.. .+.+.++|....     .+|+|+|.|+|  
T Consensus       245 --------------------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~  280 (364)
T cd05473         245 --------------------------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDEN  280 (364)
T ss_pred             --------------------------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCC
Confidence                                                        00000 122346786433     58999999964  


Q ss_pred             ----EEEEeCcccceeeecc-CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          323 ----KIFNLSPEQYILKTGE-GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       323 ----~~~~l~p~~yi~~~~~-~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                          .++.|+|++|+..... .....|+. +...    +..+.||||++|||++|+|||.+++|||||+++
T Consensus       281 ~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~  346 (364)
T cd05473         281 SSQSFRITILPQLYLRPVEDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST  346 (364)
T ss_pred             CCceEEEEECHHHhhhhhccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence                4789999999986432 22467985 2211    123569999999999999999999999999864

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=100.00  E-value=1.4e-33  Score=278.54  Aligned_cols=224  Identities=25%  Similarity=0.346  Sum_probs=181.9

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEee-------CcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhh
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFL-------LQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNM   94 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~-------~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L   94 (388)
                      .|+|+.+ .+.|.++.|+|+++   +..++       ++.||++..+.+. |.....|||||||+++.+.  ..++...|
T Consensus        78 ~i~Y~~gs~~~G~~~~D~v~lg---~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GilGLg~~~~~~--~~~~~~~l  151 (326)
T cd06096          78 SISYSEGSSISGFYFSDFVSFE---SYLNSNSEKESFKKIFGCHTHETNL-FLTQQATGILGLSLTKNNG--LPTPIILL  151 (326)
T ss_pred             EEEECCCCceeeEEEEEEEEec---cCCCCccccccccEEeccCccccCc-ccccccceEEEccCCcccc--cCchhHHH
Confidence            6888877 58999999999998   44432       5789999887553 5556789999999987642  23445568


Q ss_pred             hhcCCCCc--ceEEEEecCCCCCCCCcEEEECCCCCCcee----------cceeEeeecccceeEEEEccEEEcCee-ec
Q 016530           95 VEQGLVSE--EVFSFWLNRDPDAEEGGEIVFGGVDPKHFK----------GKHTYVPVTKKGYWQFELGDILIGNQS-TG  161 (388)
Q Consensus        95 ~~qg~i~~--~~FSl~L~~~~~~~~~G~L~fGgid~~~~~----------g~l~~~pv~~~~~w~v~l~~i~vgg~~-~~  161 (388)
                      ++++.+..  ++||+||.+.     +|.|+|||+|++++.          +++.|+|+.+..+|.|.+++|+++++. ..
T Consensus       152 ~~~~~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~  226 (326)
T cd06096         152 FTKRPKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNS  226 (326)
T ss_pred             HHhcccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccce
Confidence            88877765  9999999864     699999999999987          789999999889999999999999886 11


Q ss_pred             eecCCceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccc
Q 016530          162 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYV  241 (388)
Q Consensus       162 ~~~~~~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~  241 (388)
                      ....+..++|||||+++++|+++++++.++                                                  
T Consensus       227 ~~~~~~~aivDSGTs~~~lp~~~~~~l~~~--------------------------------------------------  256 (326)
T cd06096         227 GNTKGLGMLVDSGSTLSHFPEDLYNKINNF--------------------------------------------------  256 (326)
T ss_pred             ecccCCCEEEeCCCCcccCCHHHHHHHHhh--------------------------------------------------
Confidence            234677899999999999999987766321                                                  


Q ss_pred             cccceeeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC
Q 016530          242 STGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG  321 (388)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g  321 (388)
                                                                                             +|+|+|.|+
T Consensus       257 -----------------------------------------------------------------------~P~i~~~f~  265 (326)
T cd06096         257 -----------------------------------------------------------------------FPTITIIFE  265 (326)
T ss_pred             -----------------------------------------------------------------------cCcEEEEEc
Confidence                                                                                   289999998


Q ss_pred             -CEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          322 -DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       322 -g~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                       |+.++++|++|+.+...   ..|...+...      .+.||||++|||++|+|||++++|||||++
T Consensus       266 ~g~~~~i~p~~y~~~~~~---~~c~~~~~~~------~~~~ILG~~flr~~y~vFD~~~~riGfa~~  323 (326)
T cd06096         266 NNLKIDWKPSSYLYKKES---FWCKGGEKSV------SNKPILGASFFKNKQIIFDLDNNRIGFVES  323 (326)
T ss_pred             CCcEEEECHHHhccccCC---ceEEEEEecC------CCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence             89999999999987543   2477666532      257999999999999999999999999986

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=100.00  E-value=2.8e-33  Score=268.34  Aligned_cols=214  Identities=24%  Similarity=0.368  Sum_probs=178.2

Q ss_pred             eEEee-eeEEEEEEEeeeEEeecccce--EeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCC
Q 016530           23 RIRCV-LVLIVHFLNWCPFTWQCACLQ--IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~-~~~~~g~~~~d~~~~~~~~~~--~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~   99 (388)
                      .+.|. .+.++|+++.|+|+++   +.  +++++.||+++.+.+  +.....+||||||++..+      ++.+|..++ 
T Consensus        34 ~~~Y~dg~~~~G~~~~D~v~~g---~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~-  101 (265)
T cd05476          34 EYSYGDGSSTSGVLATETFTFG---DSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG-  101 (265)
T ss_pred             EeEeCCCceeeeeEEEEEEEec---CCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc-
Confidence            45677 5689999999999999   67  899999999998765  556678999999997654      667787776 


Q ss_pred             CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc----cceeEEEEccEEEcCeeece--------ecCCc
Q 016530          100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGV--------CEGGC  167 (388)
Q Consensus       100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~----~~~w~v~l~~i~vgg~~~~~--------~~~~~  167 (388)
                         ++||+||.+..+....|+|+|||+|++ +.+++.|+|+..    .++|.+++++|+++++.+.+        +....
T Consensus       102 ---~~Fs~~l~~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~  177 (265)
T cd05476         102 ---NKFSYCLVPHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSG  177 (265)
T ss_pred             ---CeeEEEccCCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCC
Confidence               899999997533346899999999999 899999999975    58999999999999997642        24567


Q ss_pred             eEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCccccccccee
Q 016530          168 AAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKT  247 (388)
Q Consensus       168 ~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~  247 (388)
                      .+++||||+++++|+++                                                               
T Consensus       178 ~ai~DTGTs~~~lp~~~---------------------------------------------------------------  194 (265)
T cd05476         178 GTIIDSGTTLTYLPDPA---------------------------------------------------------------  194 (265)
T ss_pred             cEEEeCCCcceEcCccc---------------------------------------------------------------
Confidence            89999999999999440                                                               


Q ss_pred             eeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEE
Q 016530          248 VVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFN  326 (388)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~  326 (388)
                                                                                       +|+|+|.|+ +..+.
T Consensus       195 -----------------------------------------------------------------~P~i~~~f~~~~~~~  209 (265)
T cd05476         195 -----------------------------------------------------------------YPDLTLHFDGGADLE  209 (265)
T ss_pred             -----------------------------------------------------------------cCCEEEEECCCCEEE
Confidence                                                                             189999998 89999


Q ss_pred             eCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          327 LSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       327 l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      ++|++|+.+..  ....|+..+. .    +..+.||||++|||++|++||.+++|||||++
T Consensus       210 i~~~~y~~~~~--~~~~C~~~~~-~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~  263 (265)
T cd05476         210 LPPENYFVDVG--EGVVCLAILS-S----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPA  263 (265)
T ss_pred             eCcccEEEECC--CCCEEEEEec-C----CCCCcEEEChhhcccEEEEEECCCCEEeeecC
Confidence            99999998543  3468975443 2    13468999999999999999999999999986

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-33  Score=281.99  Aligned_cols=254  Identities=37%  Similarity=0.628  Sum_probs=207.6

Q ss_pred             eEEeee-eEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccc-cCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016530           23 RIRCVL-VLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLL-ARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~-~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~-~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i  100 (388)
                      .|+|+. +...|.++.|+|+++....+.++++.|||+..+.+. |.. .++|||||||+.+++.....+.+.++.     
T Consensus       124 ~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~-----  197 (398)
T KOG1339|consen  124 SIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYNAI-----  197 (398)
T ss_pred             EEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecccccCCc-----
Confidence            788999 789999999999999221278888999999998876 555 678999999999999766555444433     


Q ss_pred             CcceEEEEecCCCCC-CCCcEEEECCCCCCceecceeEeeecccc--eeEEEEccEEEcCee----eceecCCceEEEcC
Q 016530          101 SEEVFSFWLNRDPDA-EEGGEIVFGGVDPKHFKGKHTYVPVTKKG--YWQFELGDILIGNQS----TGVCEGGCAAIVDS  173 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~-~~~G~L~fGgid~~~~~g~l~~~pv~~~~--~w~v~l~~i~vgg~~----~~~~~~~~~aivDS  173 (388)
                        ++||+||.+.... ...|.|+||++|+.++.+.+.|+|+....  ||.+.+.+|+|+++.    ...+.....+++||
T Consensus       198 --~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDS  275 (398)
T KOG1339|consen  198 --NVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDS  275 (398)
T ss_pred             --eeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEEC
Confidence              2899999987533 25899999999999999999999998877  999999999999843    22233357899999


Q ss_pred             CCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeeccc
Q 016530          174 GTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN  253 (388)
Q Consensus       174 GTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~  253 (388)
                      ||+++++|.+++++|.+++++.-                                                         
T Consensus       276 GTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------------------  298 (398)
T KOG1339|consen  276 GTSLTYLPTSAYNALREAIGAEV---------------------------------------------------------  298 (398)
T ss_pred             CcceeeccHHHHHHHHHHHHhhe---------------------------------------------------------
Confidence            99999999999999999996530                                                         


Q ss_pred             ccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCC----CCcEEEEEC-CEEEEeC
Q 016530          254 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT----MPNVSFTIG-DKIFNLS  328 (388)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~----lP~i~f~~g-g~~~~l~  328 (388)
                                                               +.+...+.+.++|.....    +|+|.|+|+ |+.|.++
T Consensus       299 -----------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~  337 (398)
T KOG1339|consen  299 -----------------------------------------SVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLP  337 (398)
T ss_pred             -----------------------------------------eccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeC
Confidence                                                     001234557788887766    999999999 8999999


Q ss_pred             cccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCC-CCeEEEEec
Q 016530          329 PEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSG-KLRIGFAEA  387 (388)
Q Consensus       329 p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~-~~rIGfA~~  387 (388)
                      +++|+++....... |.+.+...+.+    +.||||+.|+|+++++||.. ++|||||++
T Consensus       338 ~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~  392 (398)
T KOG1339|consen  338 PKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA  392 (398)
T ss_pred             ccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence            99999987654222 99988865422    68999999999999999999 999999985

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=100.00  E-value=2.5e-32  Score=259.59  Aligned_cols=169  Identities=40%  Similarity=0.613  Sum_probs=148.5

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .++|..+.+.|.+..|+|+++   +.+++++.||+++...+ .+.....+||||||++..+.....+++++|.+++.|.+
T Consensus        61 ~~~Y~~g~~~g~~~~D~v~~~---~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~  136 (283)
T cd05471          61 SITYGDGSVTGGLGTDTVTIG---GLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISS  136 (283)
T ss_pred             EEEECCCeEEEEEEEeEEEEC---CEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCC
Confidence            788888899999999999999   88899999999998754 34456789999999998776677899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc--cceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK--KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~--~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++||+||.+.......|.|+|||+|++++.+++.|+|+..  ..+|.+.+.+|.++++..........+++||||+++++
T Consensus       137 ~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~l  216 (283)
T cd05471         137 PVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYL  216 (283)
T ss_pred             CEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeC
Confidence            9999999985322358999999999999999999999987  89999999999999974222346788999999999999


Q ss_pred             CHHHHHHHHHHhCCc
Q 016530          181 PTPVVTEINHAIGGE  195 (388)
Q Consensus       181 P~~~~~~i~~~i~~~  195 (388)
                      |++++++|.+++.+.
T Consensus       217 p~~~~~~l~~~~~~~  231 (283)
T cd05471         217 PSSVYDAILKALGAA  231 (283)
T ss_pred             CHHHHHHHHHHhCCc
Confidence            999999999999765

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall

Probab=100.00  E-value=1e-32  Score=277.36  Aligned_cols=257  Identities=15%  Similarity=0.184  Sum_probs=190.7

Q ss_pred             EEEEEEEeeeEEeecccc-----eEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCcce
Q 016530           30 LIVHFLNWCPFTWQCACL-----QIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEV  104 (388)
Q Consensus        30 ~~~g~~~~d~~~~~~~~~-----~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~  104 (388)
                      ...|+++.|+|+++...|     .+++++.|||+.......+ ...+|||||||+..++      +..+|..++. .+++
T Consensus        80 ~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~  151 (362)
T cd05489          80 CATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARK  151 (362)
T ss_pred             EeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcc
Confidence            778999999999974322     4899999999987532222 2347999999999887      3446665544 5799


Q ss_pred             EEEEecCCCCCCCCcEEEECCCCCCcee------cceeEeeeccc----ceeEEEEccEEEcCeeecee--------cCC
Q 016530          105 FSFWLNRDPDAEEGGEIVFGGVDPKHFK------GKHTYVPVTKK----GYWQFELGDILIGNQSTGVC--------EGG  166 (388)
Q Consensus       105 FSl~L~~~~~~~~~G~L~fGgid~~~~~------g~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~--------~~~  166 (388)
                      ||+||.++.  ...|.|+||+.++.++.      +.+.|+|+..+    .||.|++++|+||++.+.+.        ...
T Consensus       152 FS~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~  229 (362)
T cd05489         152 FALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGP  229 (362)
T ss_pred             eEEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCC
Confidence            999998753  24899999999987764      78999999754    79999999999999987642        224


Q ss_pred             ceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccce
Q 016530          167 CAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIK  246 (388)
Q Consensus       167 ~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~  246 (388)
                      ..++|||||+++++|++++++|.+++...          +..+..         ..+.                      
T Consensus       230 ~g~iiDSGTs~t~lp~~~y~~l~~a~~~~----------~~~~~~---------~~~~----------------------  268 (362)
T cd05489         230 GGVKLSTVVPYTVLRSDIYRAFTQAFAKA----------TARIPR---------VPAA----------------------  268 (362)
T ss_pred             CcEEEecCCceEEECHHHHHHHHHHHHHH----------hcccCc---------CCCC----------------------
Confidence            56999999999999999999999998532          000000         0000                      


Q ss_pred             eeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECC--EE
Q 016530          247 TVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD--KI  324 (388)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg--~~  324 (388)
                                                              .....+|.....     ...|+....+|+|+|+|+|  ..
T Consensus       269 ----------------------------------------~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~~  303 (362)
T cd05489         269 ----------------------------------------AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGVN  303 (362)
T ss_pred             ----------------------------------------CCCcCccccCCC-----cCCcccccccceEEEEEeCCCeE
Confidence                                                    000024443321     1234334689999999975  99


Q ss_pred             EEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          325 FNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       325 ~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      +.|+|++|+++..+  ..+|+ +|...+..  .++.||||+.|||++|++||.+++|||||++
T Consensus       304 ~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~  361 (362)
T cd05489         304 WTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS  361 (362)
T ss_pred             EEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence            99999999998653  35796 67654321  2468999999999999999999999999975

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=100.00  E-value=3.8e-32  Score=262.02  Aligned_cols=220  Identities=21%  Similarity=0.325  Sum_probs=178.2

Q ss_pred             eEEee-eeEEEEEEEeeeEEeecc-cceEeeCcEEEEEEeeCCcc-ccccCccEEEeeccCccccCCCCchhhhhhhcCC
Q 016530           23 RIRCV-LVLIVHFLNWCPFTWQCA-CLQIFLLQVFIEATREGSLT-FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~-~~~~~g~~~~d~~~~~~~-~~~~v~~~~Fg~~~~~~~~~-f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~   99 (388)
                      .|.|+ .+.++|.+++|+|+++.. ++..++++.||++..+.+.. +...+.|||||||+..++      ++.+|.++++
T Consensus        43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~  116 (273)
T cd05475          43 EIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGI  116 (273)
T ss_pred             EeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCC
Confidence            56777 568899999999999733 34688999999998765432 233467999999997654      7889999999


Q ss_pred             CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeeccc---ceeEEEEccEEEcCeeeceecCCceEEEcCCCc
Q 016530          100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEGGCAAIVDSGTS  176 (388)
Q Consensus       100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~---~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs  176 (388)
                      | +++||+||.+.    ..|.|+||  |..++.+++.|+|+.++   .+|.+++.+|+||++...  ..+..++|||||+
T Consensus       117 i-~~~Fs~~l~~~----~~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt  187 (273)
T cd05475         117 I-KNVIGHCLSSN----GGGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSS  187 (273)
T ss_pred             c-CceEEEEccCC----CCeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCc
Confidence            9 89999999873    37999998  44567789999999864   899999999999998653  4567899999999


Q ss_pred             CcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccC
Q 016530          177 LLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA  256 (388)
Q Consensus       177 ~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  256 (388)
                      ++++|++++                                                                       
T Consensus       188 ~t~lp~~~y-----------------------------------------------------------------------  196 (273)
T cd05475         188 YTYFNAQAY-----------------------------------------------------------------------  196 (273)
T ss_pred             eEEcCCccc-----------------------------------------------------------------------
Confidence            999995411                                                                       


Q ss_pred             CCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECC----EEEEeCcccc
Q 016530          257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD----KIFNLSPEQY  332 (388)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg----~~~~l~p~~y  332 (388)
                                                                              +|+|+|.|++    +.++|+|++|
T Consensus       197 --------------------------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y  220 (273)
T cd05475         197 --------------------------------------------------------FKPLTLKFGKGWRTRLLEIPPENY  220 (273)
T ss_pred             --------------------------------------------------------cccEEEEECCCCceeEEEeCCCce
Confidence                                                                    5889999986    7999999999


Q ss_pred             eeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          333 ILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       333 i~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      +.....  ...|+..+...+.  ..++.||||++|||++|+|||++++|||||++.
T Consensus       221 ~~~~~~--~~~Cl~~~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~  272 (273)
T cd05475         221 LIISEK--GNVCLGILNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD  272 (273)
T ss_pred             EEEcCC--CCEEEEEecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence            987542  3579877654321  234689999999999999999999999999863

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>PLN03146 aspartyl protease family protein; Provisional

Probab=99.96  E-value=6.5e-29  Score=255.10  Aligned_cols=247  Identities=19%  Similarity=0.245  Sum_probs=181.5

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeeccc--ceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCAC--LQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~--~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~   99 (388)
                      .++|+.+. ..|+++.|+|+++...  .++++++.|||++...+. |. ...+||||||+..++      ++.+|..+  
T Consensus       163 ~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql~~~--  232 (431)
T PLN03146        163 SYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQLGSS--  232 (431)
T ss_pred             EEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHhhHh--
Confidence            56777664 6899999999998322  267999999999876553 43 257999999998765      45555442  


Q ss_pred             CCcceEEEEecCCCC-CCCCcEEEECCCCCCceec-ceeEeeecc---cceeEEEEccEEEcCeeeceecC------Cce
Q 016530          100 VSEEVFSFWLNRDPD-AEEGGEIVFGGVDPKHFKG-KHTYVPVTK---KGYWQFELGDILIGNQSTGVCEG------GCA  168 (388)
Q Consensus       100 i~~~~FSl~L~~~~~-~~~~G~L~fGgid~~~~~g-~l~~~pv~~---~~~w~v~l~~i~vgg~~~~~~~~------~~~  168 (388)
                      ++ ++||+||.+..+ ....|.|+||+.  .++.+ .+.|+|+..   ..+|.|.+++|+||++.+.+...      ...
T Consensus       233 ~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~  309 (431)
T PLN03146        233 IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGN  309 (431)
T ss_pred             hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCc
Confidence            43 589999976322 235799999984  34444 488999863   47999999999999998764322      246


Q ss_pred             EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016530          169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV  248 (388)
Q Consensus       169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~  248 (388)
                      ++|||||+++++|+++++++.+++...                     + .. .+.                        
T Consensus       310 ~iiDSGTt~t~Lp~~~y~~l~~~~~~~---------------------~-~~-~~~------------------------  342 (431)
T PLN03146        310 IIIDSGTTLTLLPSDFYSELESAVEEA---------------------I-GG-ERV------------------------  342 (431)
T ss_pred             EEEeCCccceecCHHHHHHHHHHHHHH---------------------h-cc-ccC------------------------
Confidence            899999999999999999998887422                     0 00 000                        


Q ss_pred             eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCC---CCCCcEEEEECCEEE
Q 016530          249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---PTMPNVSFTIGDKIF  325 (388)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~---~~lP~i~f~~gg~~~  325 (388)
                                                                      .... ....+|...   ..+|+|+|+|+|..+
T Consensus       343 ------------------------------------------------~~~~-~~~~~C~~~~~~~~~P~i~~~F~Ga~~  373 (431)
T PLN03146        343 ------------------------------------------------SDPQ-GLLSLCYSSTSDIKLPIITAHFTGADV  373 (431)
T ss_pred             ------------------------------------------------CCCC-CCCCccccCCCCCCCCeEEEEECCCee
Confidence                                                            0000 012345321   368999999999999


Q ss_pred             EeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          326 NLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       326 ~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      .|+|++|++....  ...|+. +...      .+.||||+.|||++|++||.+++|||||++
T Consensus       374 ~l~~~~~~~~~~~--~~~Cl~-~~~~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~  426 (431)
T PLN03146        374 KLQPLNTFVKVSE--DLVCFA-MIPT------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT  426 (431)
T ss_pred             ecCcceeEEEcCC--CcEEEE-EecC------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence            9999999997643  357985 4321      246999999999999999999999999986

>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A

Probab=99.71  E-value=9.3e-17  Score=143.81  Aligned_cols=152  Identities=22%  Similarity=0.391  Sum_probs=101.9

Q ss_pred             eeEEEEccEEEcCeeeceecC-------CceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHH
Q 016530          145 YWQFELGDILIGNQSTGVCEG-------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLL  217 (388)
Q Consensus       145 ~w~v~l~~i~vgg~~~~~~~~-------~~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l  217 (388)
                      +|.|++.+|+||++.+.+...       ...++|||||++++||+++++++.+++...          +....       
T Consensus         1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~----------~~~~~-------   63 (161)
T PF14541_consen    1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ----------MGAPG-------   63 (161)
T ss_dssp             SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------HHTCT-------
T ss_pred             CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------hhhcc-------
Confidence            588999999999999876543       467999999999999999999999999432          00000       


Q ss_pred             hhCCCc-hhhhhhccccccCCcccccccceeeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCC
Q 016530          218 VSGLLP-EKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSL  296 (388)
Q Consensus       218 ~~~~~p-~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~  296 (388)
                         +.+ ..                                                            ...-.++|.+.
T Consensus        64 ---~~~~~~------------------------------------------------------------~~~~~~~Cy~~   80 (161)
T PF14541_consen   64 ---VSREAP------------------------------------------------------------PFSGFDLCYNL   80 (161)
T ss_dssp             -----CEE---------------------------------------------------------------TT-S-EEEG
T ss_pred             ---cccccc------------------------------------------------------------cCCCCCceeec
Confidence               000 00                                                            00112345544


Q ss_pred             CCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEE
Q 016530          297 PNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVF  375 (388)
Q Consensus       297 p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~Vf  375 (388)
                      +...    .. .....+|+|+|+|. |..++|+|++|++....  ...|+..... +  ....+..|||..+|++++++|
T Consensus        81 ~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~-~--~~~~~~~viG~~~~~~~~v~f  150 (161)
T PF14541_consen   81 SSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPS-D--ADDDGVSVIGNFQQQNYHVVF  150 (161)
T ss_dssp             GCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEE-T--STTSSSEEE-HHHCCTEEEEE
T ss_pred             cccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEcc-C--CCCCCcEEECHHHhcCcEEEE
Confidence            4310    01 12347999999997 89999999999998763  4789965443 1  223467899999999999999


Q ss_pred             eCCCCeEEEEe
Q 016530          376 DSGKLRIGFAE  386 (388)
Q Consensus       376 D~~~~rIGfA~  386 (388)
                      |++++||||+|
T Consensus       151 Dl~~~~igF~~  161 (161)
T PF14541_consen  151 DLENGRIGFAP  161 (161)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCEEEEeC
Confidence            99999999996

>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A

Probab=98.51  E-value=6.5e-07  Score=80.76  Aligned_cols=89  Identities=24%  Similarity=0.265  Sum_probs=66.1

Q ss_pred             EEee-eeEEEEEEEeeeEEeeccc--ceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016530           24 IRCV-LVLIVHFLNWCPFTWQCAC--LQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV  100 (388)
Q Consensus        24 ~~~~-~~~~~g~~~~d~~~~~~~~--~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i  100 (388)
                      +.|. .....|.+..|+|+++...  ...+.+..|||++...+. +  ...+||||||+..++      ++.+|.++   
T Consensus        73 ~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~-~--~~~~GilGLg~~~~S------l~sQl~~~---  140 (164)
T PF14543_consen   73 QSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL-F--YGADGILGLGRGPLS------LPSQLASS---  140 (164)
T ss_dssp             EEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS-S--TTEEEEEE-SSSTTS------HHHHHHHH---
T ss_pred             eecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC-C--cCCCcccccCCCccc------HHHHHHHh---
Confidence            3444 4678999999999998442  278899999999987653 2  267999999998876      78888887   


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECC
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGG  125 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGg  125 (388)
                      ..+.||+||.+ .+....|.|+||+
T Consensus       141 ~~~~FSyCL~~-~~~~~~g~l~fG~  164 (164)
T PF14543_consen  141 SGNKFSYCLPS-SSPSSSGFLSFGD  164 (164)
T ss_dssp             --SEEEEEB-S--SSSSEEEEEECS
T ss_pred             cCCeEEEECCC-CCCCCCEEEEeCc
Confidence            57899999999 2234689999995

>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []

Probab=98.11  E-value=1.4e-06  Score=58.97  Aligned_cols=35  Identities=51%  Similarity=0.926  Sum_probs=33.5

Q ss_pred             ecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016530          199 SAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  233 (388)
Q Consensus       199 ~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c  233 (388)
                      +++|+.+|++|++.|+++|.++++|+.+|+.+++|
T Consensus         1 ~~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C   35 (35)
T PF03489_consen    1 SDECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC   35 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred             CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence            46899999999999999999999999999999998

They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....

>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes

Probab=97.88  E-value=9.8e-06  Score=55.74  Aligned_cols=38  Identities=26%  Similarity=0.628  Sum_probs=36.3

Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP  297 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p  297 (388)
                      ..|.+|+.++++++..|+++.|+++|...+++.|.++|
T Consensus         2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP   39 (39)
T PF05184_consen    2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred             CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence            46999999999999999999999999999999999886

Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases

Probab=97.61  E-value=0.00013  Score=60.32  Aligned_cols=52  Identities=33%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEee
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGL   77 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGL   77 (388)
                      .+.|..+.+.|.+..|+|+++   +..++++.||+++.+.+..+.....||||||
T Consensus        58 ~~~Y~~g~~~g~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL  109 (109)
T cd05470          58 SITYGTGSLSGGLSTDTVSIG---DIEVVGQAFGCATDEPGATFLPALFDGILGL  109 (109)
T ss_pred             EEEeCCCeEEEEEEEEEEEEC---CEEECCEEEEEEEecCCccccccccccccCC
Confidence            466777888899999999999   8999999999999987654555678999998

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site

>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.00023  Score=67.52  Aligned_cols=111  Identities=29%  Similarity=0.494  Sum_probs=80.4

Q ss_pred             HHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcccch
Q 016530          185 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSA  264 (388)
Q Consensus       185 ~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (388)
                      +...-+.++..  ...+|+.+|++|.+.|+..|..+..|+.+|+++.+|+-.... +..   + .+    +..--++|.+
T Consensus        64 l~~~Ckkl~~~--~~~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~~-~~~---~-~~----~~~~~~~C~~  132 (218)
T KOG1340|consen   64 LHAECKKLPKA--IPFECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAGP-VSE---V-FA----SQPAAGECEL  132 (218)
T ss_pred             HHHHHHHhccc--chHHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccch-hhh---h-hh----hcccccccHH
Confidence            33334555443  233999999999999999999999999999999999852111 110   0 00    0111478999


Q ss_pred             hhhhHHHHHHHhhh-chhHHHHHHHhhhhccCCCCCCCceeecCCCC
Q 016530          265 CEMAVVWVQNQLKQ-KQTKEKVLSYINELCDSLPNPMGESIIDCDRI  310 (388)
Q Consensus       265 ~~~~~~~~~~~~~~-~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~  310 (388)
                      |..+|+++.-.|.. +.++.++.....+.|..++.    |.-.|..+
T Consensus       133 C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~~----~~~~Ck~f  175 (218)
T KOG1340|consen  133 CRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLPN----YEQKCKQF  175 (218)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHhhccCCcc----chhHHHHH
Confidence            99999999999999 88888888888888976654    33357643

>smart00741 SapB Saposin (B) Domains

Probab=93.89  E-value=0.035  Score=42.12  Aligned_cols=47  Identities=43%  Similarity=0.791  Sum_probs=38.8

Q ss_pred             HHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016530          185 VTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  233 (388)
Q Consensus       185 ~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c  233 (388)
                      +..+-..++  ......|+.+++.|.+.+++.+..+..|+.+|+.++.|
T Consensus        30 ~~~~C~~~~--~~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C   76 (76)
T smart00741       30 LEKVCKKLP--KSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC   76 (76)
T ss_pred             HHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence            344444455  23678999999999999999999999999999999987

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.

>smart00741 SapB Saposin (B) Domains

Probab=93.24  E-value=0.087  Score=39.89  Aligned_cols=37  Identities=32%  Similarity=0.697  Sum_probs=35.9

Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCC
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP  297 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p  297 (388)
                      +|..|+.++..++..+.++.+.+.+...++++|..+|
T Consensus         2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~   38 (76)
T smart00741        2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP   38 (76)
T ss_pred             cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence            6999999999999999999999999999999999998

Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.

>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]

Probab=92.37  E-value=0.11  Score=49.38  Aligned_cols=43  Identities=33%  Similarity=0.592  Sum_probs=38.5

Q ss_pred             CCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccccc
Q 016530          193 GGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF  235 (388)
Q Consensus       193 ~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~  235 (388)
                      ...+..+..|+.+|++|.+.++.+|..+++|..+|++++.|+.
T Consensus       163 k~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~  205 (218)
T KOG1340|consen  163 KSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPP  205 (218)
T ss_pred             cCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCc
Confidence            4445566779999999999999999999999999999999994

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=91.92  E-value=0.86  Score=39.10  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=22.0

Q ss_pred             CceEEcHhhhcceEEEEeCCCCeEE
Q 016530          359 PLWILGDVFMGVYHTVFDSGKLRIG  383 (388)
Q Consensus       359 ~~~ILG~~Flr~~y~VfD~~~~rIG  383 (388)
                      ...|||..||+.+-.+.|+.+.+|-
T Consensus        99 ~d~ILG~d~L~~~~~~ID~~~~~i~  123 (124)
T cd05479          99 VDFLIGLDMLKRHQCVIDLKENVLR  123 (124)
T ss_pred             cCEEecHHHHHhCCeEEECCCCEEE
Confidence            3459999999999999999998874

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses)

Probab=89.89  E-value=0.84  Score=40.07  Aligned_cols=27  Identities=22%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             ceEEcHhhhcceEEEEeCCCCeEEEEe
Q 016530          360 LWILGDVFMGVYHTVFDSGKLRIGFAE  386 (388)
Q Consensus       360 ~~ILG~~Flr~~y~VfD~~~~rIGfA~  386 (388)
                      ..|||.+||+.+..+-|..+++|-|-.
T Consensus       105 DvILGm~WL~~~~~~IDw~~k~v~f~~  131 (135)
T PF08284_consen  105 DVILGMDWLKKHNPVIDWATKTVTFNS  131 (135)
T ss_pred             eeEeccchHHhCCCEEEccCCEEEEeC
Confidence            369999999999999999999998853

These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=85.00  E-value=1.9  Score=37.01  Aligned_cols=37  Identities=14%  Similarity=0.158  Sum_probs=29.1

Q ss_pred             ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016530          142 KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI  188 (388)
Q Consensus       142 ~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i  188 (388)
                      ..+++.++   +.+||+++.       ++||||.+.+.++.+.++++
T Consensus         8 ~~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L   44 (121)
T TIGR02281         8 GDGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL   44 (121)
T ss_pred             CCCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence            34555555   578888664       89999999999999988775

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>PF13650 Asp_protease_2: Aspartyl protease

Probab=83.69  E-value=1.3  Score=34.42  Aligned_cols=29  Identities=10%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             EEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHH
Q 016530          153 ILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI  188 (388)
Q Consensus       153 i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i  188 (388)
                      +.+||+++.       +++|||++...++++.++++
T Consensus         3 v~vng~~~~-------~liDTGa~~~~i~~~~~~~l   31 (90)
T PF13650_consen    3 VKVNGKPVR-------FLIDTGASISVISRSLAKKL   31 (90)
T ss_pred             EEECCEEEE-------EEEcCCCCcEEECHHHHHHc
Confidence            567887664       89999999999999988776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
1qdm_A	478	Crystal Structure Of Prophytepsin, A Zymogen Of A B		1e-129
1b5f_A	239	Native Cardosin A From Cynara Cardunculus L. Length		1e-48
1lya_B	241	Crystal Structures Of Native And Inhibited Forms Of		3e-37
1lya_B	241	Crystal Structures Of Native And Inhibited Forms Of		7e-25
3rfi_A	108	Crystal Structure Of The Saposin-Like Domain Of Pla		3e-33
2x0b_A	383	Crystal Structure Of Human Angiotensinogen Complexe		4e-32
2x0b_A	383	Crystal Structure Of Human Angiotensinogen Complexe		8e-14
2bks_A	340	Crystal Structure Of Renin-Pf00074777 Complex Lengt		5e-32
2bks_A	340	Crystal Structure Of Renin-Pf00074777 Complex Lengt		8e-14
3d91_A	341	Human Renin In Complex With Remikiren Length = 341		5e-32
3d91_A	341	Human Renin In Complex With Remikiren Length = 341		7e-14
2g24_A	333	Ketopiperazine-Based Renin Inhibitors: Optimization		5e-32
2g24_A	333	Ketopiperazine-Based Renin Inhibitors: Optimization		8e-14
2i4q_A	336	Human ReninPF02342674 COMPLEX Length = 336		5e-32
2i4q_A	336	Human ReninPF02342674 COMPLEX Length = 336		8e-14
1hrn_A	337	High Resolution Crystal Structures Of Recombinant H		6e-32
1hrn_A	337	High Resolution Crystal Structures Of Recombinant H		8e-14
1tzs_A	351	Crystal Structure Of An Activation Intermediate Of		2e-31
1tzs_A	351	Crystal Structure Of An Activation Intermediate Of		4e-16
3vcm_A	335	Crystal Structure Of Human Prorenin Length = 335		3e-31
3vcm_A	335	Crystal Structure Of Human Prorenin Length = 335		9e-14
1smr_A	335	The 3-D Structure Of Mouse Submaxillary Renin Compl		6e-28
1smr_A	335	The 3-D Structure Of Mouse Submaxillary Renin Compl		4e-16
5pep_A	326	X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim		2e-26
5pep_A	326	X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim		2e-15
3psg_A	370	The High Resolution Crystal Structure Of Porcine Pe		3e-26
3psg_A	370	The High Resolution Crystal Structure Of Porcine Pe		4e-15
1psa_A	326	Structure Of A Pepsin(Slash)renin Inhibitor Complex		3e-26
1psa_A	326	Structure Of A Pepsin(Slash)renin Inhibitor Complex		3e-15
3pep_A	326	Revised 2.3 Angstroms Structure Of Porcine Pepsin.		3e-26
3pep_A	326	Revised 2.3 Angstroms Structure Of Porcine Pepsin.		4e-15
1f34_A	326	Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou		3e-26
1f34_A	326	Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou		3e-15
2psg_A	370	Refined Structure Of Porcine Pepsinogen At 1.8 Angs		3e-26
2psg_A	370	Refined Structure Of Porcine Pepsinogen At 1.8 Angs		4e-15
4pep_A	326	The Molecular And Crystal Structures Of Monoclinic		3e-26
4pep_A	326	The Molecular And Crystal Structures Of Monoclinic		4e-15
1b5f_B	87	Native Cardosin A From Cynara Cardunculus L. Length		3e-25
1pso_E	326	The Crystal Structure Of Human Pepsin And Its Compl		3e-25
1pso_E	326	The Crystal Structure Of Human Pepsin And Its Compl		3e-13
1flh_A	326	Crystal Structure Of Human Uropepsin At 2.45 A Reso		3e-25
1flh_A	326	Crystal Structure Of Human Uropepsin At 2.45 A Reso		7e-13
1g0v_A	329	The Structure Of Proteinase A Complexed With A Ia3		8e-25
1g0v_A	329	The Structure Of Proteinase A Complexed With A Ia3		1e-09
1dp5_A	329	The Structure Of Proteinase A Complexed With A Ia3		1e-24
1dp5_A	329	The Structure Of Proteinase A Complexed With A Ia3		1e-09
2jxr_A	329	Structure Of Yeast Proteinase A Length = 329		1e-24
2jxr_A	329	Structure Of Yeast Proteinase A Length = 329		1e-09
1htr_B	329	Crystal And Molecular Structures Of Human Progastri		2e-23
1htr_B	329	Crystal And Molecular Structures Of Human Progastri		6e-11
1czi_E	323	Chymosin Complex With The Inhibitor Cp-113972 Lengt		3e-23
1czi_E	323	Chymosin Complex With The Inhibitor Cp-113972 Lengt		1e-09
3cms_A	323	Engineering Enzyme Sub-Site Specificity: Preparatio		5e-23
3cms_A	323	Engineering Enzyme Sub-Site Specificity: Preparatio		1e-09
4aa9_A	320	Camel Chymosin At 1.6a Resolution Length = 320		8e-23
4aa9_A	320	Camel Chymosin At 1.6a Resolution Length = 320		2e-09
1am5_A	324	The Crystal Structure And Proposed Amino Acid Seque		2e-22
1am5_A	324	The Crystal Structure And Proposed Amino Acid Seque		1e-10
3qrv_A	336	Crystal Structure Of Plasmepsin I (Pmi) From Plasmo		5e-14
3qrv_A	336	Crystal Structure Of Plasmepsin I (Pmi) From Plasmo		6e-05
3liz_A	334	Crystal Structure Of Bla G 2 Complexed With Fab 4c3		5e-14
3liz_A	334	Crystal Structure Of Bla G 2 Complexed With Fab 4c3		4e-07
1yg9_A	330	The Structure Of Mutant (N93q) Of Bla G 2 Length =		5e-14
1yg9_A	330	The Structure Of Mutant (N93q) Of Bla G 2 Length =		2e-07
3oad_B	176	Design And Optimization Of New Piperidines As Renin		7e-14
3oad_A	166	Design And Optimization Of New Piperidines As Renin		2e-13
2anl_A	327	X-Ray Crystal Structure Of The Aspartic Protease Pl		7e-12
2anl_A	327	X-Ray Crystal Structure Of The Aspartic Protease Pl		6e-04
1miq_A	375	Crystal Structure Of Proplasmepsin From The Human M		8e-11
1miq_A	375	Crystal Structure Of Proplasmepsin From The Human M		1e-04
3f9q_A	329	Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla		2e-10
3f9q_A	329	Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla		3e-04
1m43_A	331	Crystal Structure Of Pmii In Complex With Pepstatin		2e-10
1m43_A	331	Crystal Structure Of Pmii In Complex With Pepstatin		3e-04
1ls5_A	328	Crystal Structure Of Plasmepsin Iv From P. Falcipar		3e-10
2bju_A	453	Plasmepsin Ii Complexed With A Highly Active Achira		3e-10
2bju_A	453	Plasmepsin Ii Complexed With A Highly Active Achira		3e-04
1qs8_B	329	Crystal Structure Of The P. Vivax Aspartic Proteina		5e-10
1qs8_B	329	Crystal Structure Of The P. Vivax Aspartic Proteina		1e-04
1pfz_A	380	Proplasmepsin Ii From Plasmodium Falciparum Length		5e-10
1pfz_A	380	Proplasmepsin Ii From Plasmodium Falciparum Length		3e-04
1sme_A	329	Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P		6e-10
1sme_A	329	Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P		3e-04
1lf3_A	331	Crystal Structure Of Plasmepsin Ii From P Falciparu		6e-10
1lf3_A	331	Crystal Structure Of Plasmepsin Ii From P Falciparu		3e-04
1uh7_A	325	Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt		8e-09
3apr_E	325	Binding Of A Reduced Peptide Inhibitor To The Aspar		1e-08
1eag_A	342	Secreted Aspartic Proteinase (Sap2) From Candida Al		2e-08
3qvc_A	451	Crystal Structure Of Histo-Aspartic Protease (Hap)		3e-08
3qvc_A	451	Crystal Structure Of Histo-Aspartic Protease (Hap)		3e-04
1zap_A	342	Secreted Aspartic Protease From C. Albicans Length		4e-08
3fns_A	332	Crystal Structure Of Histo-Aspartic Protease (Hap)		4e-08
3fns_A	332	Crystal Structure Of Histo-Aspartic Protease (Hap)		2e-04
2ewy_A	383	Crystal Structure Of Human Bace2 In Complex With A		4e-08
2h6s_A	340	Secreted Aspartic Proteinase (sap) 3 From Candida A		1e-07
1j71_A	334	Structure Of The Extracellular Aspartic Proteinase		2e-07
2qzw_A	341	Secreted Aspartic Proteinase (Sap) 1 From Candida A		1e-06
1wkr_A	340	Crystal Structure Of Aspartic Proteinase From Irpex		2e-06
2qzx_A	342	Secreted Aspartic Proteinase (Sap) 5 From Candida A		3e-06
3fv3_A	339	Secreted Aspartic Protease 1 From Candida Parapsilo		4e-06
3bra_A	409	Bace-1 Complexed With Compound 1 Length = 409		3e-05
4ewo_A	386	Design And Synthesis Of Potent Hydroxyethylamine (H		4e-05
3cib_A	390	Structure Of Bace Bound To Sch727596 Length = 390		4e-05
2wjo_A	412	Human Bace (Beta Secretase) In Complex With Cyclohe		4e-05
4dpf_A	391	Bace-1 In Complex With A Hea-Macrocyclic Type Inhib		4e-05
2fdp_A	388	Crystal Structure Of Beta-Secretase Complexed With		4e-05
1fkn_A	391	Structure Of Beta-Secretase Complexed With Inhibito		4e-05
2zjk_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		4e-05
2zji_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		4e-05
1sgz_A	389	Crystal Structure Of Unbound Beta-Secretase Catalyt		4e-05
3udh_A	404	Crystal Structure Of Bace With Compound 1 Length =		4e-05
4b1d_A	388	New Aminoimidazoles As Bace-1 Inhibitors: From Rati		4e-05
2hm1_A	406	Crystal Structure Of Human Beta-Secretase (Bace) In		4e-05
3u6a_A	390	Rational Design And Synthesis Of Aminopiperazinones		4e-05
1tqf_A	405	Crystal Structure Of Human Beta Secretase Complexed		4e-05
3l58_A	414	Structure Of Bace Bound To Sch589432 Length = 414		4e-05
2zjh_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		4e-05
3exo_A	413	Crystal Structure Of Bace1 Bound To Inhibitor Lengt		4e-05
2zhr_A	411	Crystal Structure Of Bace1 In Complex With Om99-2 A		4e-05
3vv6_A	416	Crystal Structure Of Beta Secetase In Complex With		4e-05
3ixk_A	405	Potent Beta-Secretase 1 Inhibitor Length = 405		4e-05
3kmx_A	395	Structure Of Bace Bound To Sch346572 Length = 395		4e-05
2of0_A	402	X-Ray Crystal Structure Of Beta Secretase Complexed		4e-05
2qzl_A	411	Crystal Structure Of Human Beta Secretase Complexed		5e-05
2zjn_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		5e-05
2qk5_A	395	Structure Of Bace1 Bound To Sch626485 Length = 395		5e-05
3dm6_A	406	Beta-Secretase 1 Complexed With Statine-Based Inhib		5e-05
1ym2_A	402	Crystal Structure Of Human Beta Secretase Complexed		5e-05
3r1g_B	402	Structure Basis Of Allosteric Inhibition Of Bace1 B		5e-05
3ckp_A	412	Crystal Structure Of Bace-1 In Complex With Inhibit		5e-05
1w50_A	411	Apo Structure Of Bace (beta Secretase) Length = 411		5e-05
3hvg_A	411	Structure Of Bace (Beta Secretase) In Complex With		5e-05
3qi1_A	408	Design And Synthesis Of Hydroxyethylamine (Hea) Bac		5e-05
3tpr_A	433	Crystal Structure Of Bace1 Complexed With An Inhibi		5e-05
3tpj_A	433	Apo Structure Of Bace1 Length = 433		5e-05
2qu2_A	415	Bace1 With Compound 1 Length = 415		5e-05
1ym4_A	408	Crystal Structure Of Human Beta Secretase Complexed		5e-05
2q15_A	385	Structure Of Bace Complexed To Compound 3a Length =		6e-05
2q11_A	388	Structure Of Bace Complexed To Compound 1 Length =		6e-05
2vie_A	392	Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-		6e-05
2va5_A	455	X-Ray Crystal Structure Of Beta Secretase Complexed		7e-05
3lpi_A	455	Structure Of Bace Bound To Sch745132 Length = 455		8e-05
2hiz_A	455	Crystal Structure Of Human Beta-Secretase (Bace) In		8e-05
2zjj_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		2e-04
2rmp_A	361	Rmp-Pepstatin A Complex Length = 361		5e-04

>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478

Iteration: 1
 Score =  456 bits (1174), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/339 (65%), Positives = 272/339 (80%), Gaps = 3/339 (0%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT+E  +TFL+A+FDGI+GLGF+EI+VG AVPVW  M+EQGLVS+ VFSFWLNR 
Sbjct: 140 QEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRH 199
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D  EGGEI+FGG+DPKH+ G+HTYVPVT+KGYWQF++GD+L+G +STG C GGCAAI D
Sbjct: 200 VDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIAD 259
Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT ++TEIN  IG  GVVS ECK +VSQYG  I DLL++   P+K+C Q+GL
Sbjct: 260 SGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGL 319
Query: 233 CAFNGAEYVSTGIKTVVEKENVSAGD---SAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C F+G   VS GI++VV+ E V +       +CSACEMAVVW+QNQL Q +T++ +L Y+
Sbjct: 320 CTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYV 379
Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           N+LC+ LP+PMGES +DC  + +MP++ FTIG K F L PE+YILK GEG A  CISGF 
Sbjct: 380 NQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFT 439
Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct: 440 AMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478

>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239

Iteration: 1
 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 107/141 (75%), Gaps = 4/141 (2%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT E    FL   FDGI+GL F+ I+V    PVW NM+ QGLV E  FSFWLNR+
Sbjct: 101 QDFIEATDEADNVFLHRLFDGILGLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRN 156
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D EEGGE+VFGG+DP HF+G HTYVPVT + YWQF +GD+LIG++STG C  GC A  D
Sbjct: 157 VDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFAD 216
Query: 173 SGTSLLAGPTPVVTEINHAIG 193
           SGTSLL+GPT +VT+INHAIG
Sbjct: 217 SGTSLLSGPTAIVTQINHAIG 237

>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241

Iteration: 1
 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVF EAT++  +TF+ A+FDGI+G+ +  I+V + +PV+DN+++Q LV + +FSF+L+RD
Sbjct: 8   QVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRD 67
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           PDA+ GGE++ GG D K++KG  +Y+ VT+K YWQ  L  + + +  T +C+ GC AIVD
Sbjct: 68  PDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVD 126
Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAE 201
           +GTSL+ GP   V E+  AIG   ++  E
Sbjct: 127 TGTSLMVGPVDEVRELQKAIGAVPLIQGE 155

>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 66/94 (70%)
Query: 295 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP 354
           ++P   GE +I C+++ T+P ++  +G K + LSPE Y LK  +    +C+SGFM  D+P
Sbjct: 148 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIP 207
Query: 355 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           PP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct: 208 PPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241

>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant Aspartic Protease From Solanum Tuberosum Length = 108

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 86/104 (82%), Gaps = 2/104 (1%)
Query: 196 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN-- 253
            +VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC  +GA++VS+ IKTVVE+E   
Sbjct: 5   AIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEG 64
Query: 254 VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 297
            S G++ +C+ACEMAVVW+QNQLKQ+ TKEKVL Y+N+LC+ +P
Sbjct: 65  SSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108

>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 145 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 204
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
            NRD +  +  GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+ ST +CE G
Sbjct: 205 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 263
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
           C A+VD+G S ++G T  + ++  A+G +
Sbjct: 264 CLALVDTGASYISGSTSSIEKLMEALGAK 292

>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
           ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W L
Sbjct: 299 VVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWAL 358
Query: 364 GDVFMGVYHTVFDSGKLRIGFAEA 387
           G  F+  ++T FD    RIGFA A
Sbjct: 359 GATFIRKFYTEFDRRNNRIGFALA 382

>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340

Iteration: 1
 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
            NRD +  +  GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+ ST +CE G
Sbjct: 162 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 220
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
           C A+VD+G S ++G T  + ++  A+G +
Sbjct: 221 CLALVDTGASYISGSTSSIEKLMEALGAK 249

>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 254 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 313
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 314 ALGATFIRKFYTEFDRRNNRIGFALA 339

>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341

Iteration: 1
 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
            NRD +  +  GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+ ST +CE G
Sbjct: 162 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 220
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
           C A+VD+G S ++G T  + ++  A+G +
Sbjct: 221 CLALVDTGASYISGSTSSIEKLMEALGAK 249

>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 254 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 313
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 314 ALGATFIRKFYTEFDRRNNRIGFALA 339

>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333

Iteration: 1
 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 95  ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 154
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
            NRD +  +  GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+ ST +CE G
Sbjct: 155 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 213
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
           C A+VD+G S ++G T  + ++  A+G +
Sbjct: 214 CLALVDTGASYISGSTSSIEKLMEALGAK 242

>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 247 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 306
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 307 ALGATFIRKFYTEFDRRNNRIGFALA 332

>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336

Iteration: 1
 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 98  ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 157
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
            NRD +  +  GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+ ST +CE G
Sbjct: 158 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 216
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
           C A+VD+G S ++G T  + ++  A+G +
Sbjct: 217 CLALVDTGASYISGSTSSIEKLMEALGAK 245

>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 250 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 309
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 310 ALGATFIRKFYTEFDRRNNRIGFALA 335

>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337

Iteration: 1
 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 101/149 (67%), Gaps = 3/149 (2%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 99  ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 158
Query: 109 LNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGG 166
            NRD +  +  GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+ ST +CE G
Sbjct: 159 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDG 217
Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE 195
           C A+VD+G S ++G T  + ++  A+G +
Sbjct: 218 CLALVDTGASYISGSTSSIEKLMEALGAK 246

>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 251 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 310
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 311 ALGATFIRKFYTEFDRRNNRIGFALA 336

>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F E+  E   TF+ A FDGI+GLG+  +AVG   PV+DNM+ Q LV   +FS +++ +
Sbjct: 110 QQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSN 169
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P+   G E++FGG D  HF G   +VPVTK+ YWQ  L +I +G  +   C  GC AIVD
Sbjct: 170 PEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVD 228
Query: 173 SGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 202
           +GTSL+ GP+  + ++ +AIG    +G  + EC
Sbjct: 229 TGTSLITGPSDKIKQLQNAIGAAPVDGEYAVEC 261

>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%)
Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
           GE  ++C  +  MP+V+FTI    + LSP  Y L       + C SGF   D+ PP GPL
Sbjct: 255 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPL 314
Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAEA 387
           WILGDVF+  +++VFD G  R+G A A
Sbjct: 315 WILGDVFIRQFYSVFDRGNNRVGLAPA 341

>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 99/147 (67%), Gaps = 4/147 (2%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCA 168
            NRD     GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+ ST +CE GC 
Sbjct: 162 YNRD---SLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS-STLLCEDGCL 217
Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGGE 195
           A+VD+G S ++G T  + ++  A+G +
Sbjct: 218 ALVDTGASYISGSTSSIEKLMEALGAK 244

>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 249 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 308
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 309 ALGATFIRKFYTEFDRRNNRIGFALA 334

>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335

Iteration: 1
 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q F E T+   + F+LA+FDG++G+GF   AVG   PV+D+++ QG++ E+VFS +
Sbjct: 99  ITVTQTFGEVTQLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVY 158
Query: 109 LNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCA 168
            NR P    GGE+V GG DP+H++G   YV ++K   WQ  +  + +G+ ST +CE GC 
Sbjct: 159 YNRGPHL-LGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGS-STLLCEEGCE 216
Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGGE 195
            +VD+G+S ++ PT  +  I  A+G +
Sbjct: 217 VVVDTGSSFISAPTSSLKLIMQALGAK 243

>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 300 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 359
           + E ++ C ++PT+P++SF +G + + LS   Y+L+      ++C     A D+PPP GP
Sbjct: 247 LHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGP 306
Query: 360 LWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           +W+LG  F+  ++T FD    RIGFA A
Sbjct: 307 VWVLGATFIRKFYTEFDRHNNRIGFALA 334

>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 13/162 (8%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ 
Sbjct: 99  QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           + D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVS 207
           D+GTSLL GPT  +  I   IG      GE V+S  C  + S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGASENSDGEMVIS--CSSIAS 254

>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIASLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 11/154 (7%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ 
Sbjct: 143 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 201
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           + D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIV
Sbjct: 202 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 258
Query: 172 DSGTSLLAGPTPVVTEINHAIG------GEGVVS 199
           D+GTSLL GPT  +  I   IG      GE V+S
Sbjct: 259 DTGTSLLTGPTSAIANIQSDIGASENSDGEMVIS 292

>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 245 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 302
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 377 SGKLRIGFAEAA 388
               ++G A  A
Sbjct: 359 RANNKVGLAPVA 370

>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ 
Sbjct: 99  QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           + D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
           D+GTSLL GPT  +  I   IG     +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248

>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ 
Sbjct: 99  QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           + D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
           D+GTSLL GPT  +  I   IG     +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248

>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ 
Sbjct: 99  QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           + D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
           D+GTSLL GPT  +  I   IG     +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248

>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 11/154 (7%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ 
Sbjct: 143 QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 201
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           + D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIV
Sbjct: 202 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 258
Query: 172 DSGTSLLAGPTPVVTEINHAIG------GEGVVS 199
           D+GTSLL GPT  +  I   IG      GE V+S
Sbjct: 259 DTGTSLLTGPTSAIANIQSDIGASENSDGEMVIS 292

>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 245 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 302
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 303 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 358
Query: 377 SGKLRIGFAEAA 388
               ++G A  A
Sbjct: 359 RANNKVGLAPVA 370

>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 7/156 (4%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ 
Sbjct: 99  QIFGLSETEPGSFLYY-APFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           + D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIV
Sbjct: 158 NDDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
           D+GTSLL GPT  +  I   IG     +++ ++V+S
Sbjct: 215 DTGTSLLTGPTSAIANIQSDIGAS--ENSDGEMVIS 248

>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNV 316
           G++  CS    A+V     L    T    ++ I     +  N  GE +I C  I ++P++
Sbjct: 201 GETIACSGGCQAIVDTGTSLLTGPTS--AIANIQSDIGASENSDGEMVISCSSIDSLPDI 258
Query: 317 SFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFD 376
            FTI    + LSP  YIL+  +     C SGF   D+P   G LWILGDVF+  Y+TVFD
Sbjct: 259 VFTIDGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFD 314
Query: 377 SGKLRIGFAEAA 388
               ++G A  A
Sbjct: 315 RANNKVGLAPVA 326

>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L. Length = 87

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 305 IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILG 364
           +DC+ + +MPNVSFTIG K F L+PEQYILK G+G A  CISGF A D     GPLWILG
Sbjct: 5   VDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLWILG 63
Query: 365 DVFMGVYHTVFDSGKLRIGFAEAA 388
           DVFM  YHTVFD G L +GFAEAA
Sbjct: 64  DVFMRPYHTVFDYGNLLVGFAEAA 87

>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 9/160 (5%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+  QGLVS+++FS +L+ 
Sbjct: 99  QIFGLSETEPGSFLYY-APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           D   + G  ++FGG+D  ++ G   +VPVT +GYWQ  +  I +  ++   C  GC AIV
Sbjct: 158 D--DQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAI-ACAEGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLVVS 207
           D+GTSLL GPT  +  I   IG     +G +   C  + S
Sbjct: 215 DTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISS 254

>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
           N  G+ ++ C  I ++P++ FTI    + + P  YIL++ EG    CISGF   +LP   
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQS-EG---SCISGFQGMNLPTES 295
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           G LWILGDVF+  Y TVFD    ++G A  A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326

>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 53  QVF-IEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q+F +  T  GS  +  A FDGI+GL +  I+   A PV+DN+  QGLVS+++FS +L+ 
Sbjct: 99  QIFGLSETEPGSFLYY-APFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           D   + G  ++FGG+D  ++ G   +VPVT +GYWQ  +  I +  ++   C  GC AIV
Sbjct: 158 D--DQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAI-ACAEGCQAIV 214
Query: 172 DSGTSLLAGPTPVVTEINHAIG 193
           D+GTSLL GPT  +  I   IG
Sbjct: 215 DTGTSLLTGPTSPIANIQSDIG 236

>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
           N  G+ ++ C  I ++P++ FTI    + + P  YIL++ EG    CISGF   ++P   
Sbjct: 240 NSDGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQS-EG---SCISGFQGMNVPTES 295
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           G LWILGDVF+  Y TVFD    ++G A  A
Sbjct: 296 GELWILGDVFIRQYFTVFDRANNQVGLAPVA 326

>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329

Iteration: 1
 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NR 111
           Q F EAT E  LTF   +FDGI+GLG+  I+V   VP + N ++Q L+ E+ F+F+L + 
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
             D E GGE  FGG+D   FKG  T++PV +K YW+ +   I +G++   +   G A  +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--I 217
Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKL 204
           D+GTSL+  P+ +   IN  IG +   + +  L
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAKKGSTGQYTL 250

>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
           IN    +     G+  +DC+    +P++ F      F + P  Y L+    ++  CIS  
Sbjct: 234 INAEIGAKKGSTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAI 289
Query: 349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
              D P P GPL I+GD F+  Y++++D G   +G A+A
Sbjct: 290 TPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 3/144 (2%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NR 111
           Q F EAT E  LTF   +FDGI+GLG+  I+V   VP + N ++Q L+ E+ F+F+L + 
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
             D E GGE  FGG+D   FKG  T++PV +K YW+ +   I +G++   +   G A  +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--I 217
Query: 172 DSGTSLLAGPTPVVTEINHAIGGE 195
           D+GTSL+  P+ +   IN  IG +
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAK 241

>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
           G+  +DC+    +P++ F      F + P  Y L+    ++  CIS     D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAITPMDFPEPVGPL 301
Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAEA 387
            I+GD F+  Y++++D G   +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 3/144 (2%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWL-NR 111
           Q F EAT E  LTF   +FDGI+GLG+  I+V   VP + N ++Q L+ E+ F+F+L + 
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
             D E GGE  FGG+D   FKG  T++PV +K YW+ +   I +G++   +   G A  +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAA--I 217
Query: 172 DSGTSLLAGPTPVVTEINHAIGGE 195
           D+GTSL+  P+ +   IN  IG +
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAK 241

>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPL 360
           G+  +DC+    +P++ F      F + P  Y L+    ++  CIS     D P P GPL
Sbjct: 246 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE----VSGSCISAITPMDFPEPVGPL 301
Query: 361 WILGDVFMGVYHTVFDSGKLRIGFAEA 387
            I+GD F+  Y++++D G   +G A+A
Sbjct: 302 AIVGDAFLRKYYSIYDIGNNAVGLAKA 328

>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F  +  E    F+ A+FDGI+GL +  ++V +A      MV++G ++  VFS +L+  
Sbjct: 99  QEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQ 158
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                GG +VFGGVD   + G+  + PVT++ YWQ  + + LIG Q++G C  GC AIVD
Sbjct: 159 -QGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVD 217
Query: 173 SGTSLLAGPTPVVTEINHAIGGE 195
           +GTSLL  P   ++ +  A G +
Sbjct: 218 TGTSLLTVPQQYMSALLQATGAQ 240

>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
           ++ +S + +   +  +  G+ +++C+ I  +P+++F I    F L P  YIL        
Sbjct: 227 QQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNG---- 282
Query: 343 VCISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            C  G     L    G PLWILGDVF+  Y++V+D G  R+GFA AA
Sbjct: 283 YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329

>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 10/140 (7%)
Query: 58  ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 117
           +T+E    F  A FDGI+G+ +  +A   ++PV+DNM+ + LV++++FS +++R+    +
Sbjct: 106 STQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQ 162
Query: 118 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV---CEGGCAAIVDSG 174
              +  G +DP ++ G   +VPVT + YWQF +  + I    +GV   CEGGC AI+D+G
Sbjct: 163 ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTI----SGVVVACEGGCQAILDTG 218
Query: 175 TSLLAGPTPVVTEINHAIGG 194
           TS L GP+  +  I  AIG 
Sbjct: 219 TSKLVGPSSDILNIQQAIGA 238

>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
           I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +  +G    C SGF
Sbjct: 232 IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQD-QGF---CTSGF 287
Query: 349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            + +        WILGDVF+  Y++VFD     +G A+A
Sbjct: 288 QSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 10/140 (7%)
Query: 58  ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 117
           +T+E    F  A FDGI+G+ +  +A   ++PV+DNM+ + LV++++FS +++R+    +
Sbjct: 106 STQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN---GQ 162
Query: 118 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV---CEGGCAAIVDSG 174
              +  G +DP ++ G   +VPVT + YWQF +  + I    +GV   CEGGC AI+D+G
Sbjct: 163 ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTI----SGVVVACEGGCQAILDTG 218
Query: 175 TSLLAGPTPVVTEINHAIGG 194
           TS L GP+  +  I  AIG 
Sbjct: 219 TSKLVGPSSDILNIQQAIGA 238

>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
           I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +  +G    C SGF
Sbjct: 232 IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQD-QGF---CTSGF 287
Query: 349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            + +        WILGDVF+  Y++VFD     +G A+A
Sbjct: 288 QSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 58  ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 117
           +T +    F  + FDGI+GL +  +A   +VPV+DNM+++ LV+ ++FS +++R+    +
Sbjct: 103 STEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN---GQ 159
Query: 118 GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 177
           G  +  G +DP ++ G   +VPVT + YWQF +  + I N     C GGC AI+D+GTS+
Sbjct: 160 GSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTI-NGVAVACVGGCQAILDTGTSV 218
Query: 178 LAGPTPVVTEINHAIG 193
           L GP+  + +I  AIG
Sbjct: 219 LFGPSSDILKIQMAIG 234

>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 298 NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPR 357
           N  GE  ++C  + +MP V F I  + + LSP  Y  K  +G    C SGF   +     
Sbjct: 238 NRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKD-QGF---CTSGFQGDN----N 289
Query: 358 GPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
             LWILGDVF+  Y++VFD    R+G A+A
Sbjct: 290 SELWILGDVFIREYYSVFDRANNRVGLAKA 319

>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 69  ARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP 128
           A FDGI+GL +  IA   AVPV+DNM  Q LV +++FSF+L+       G E++ GGVD 
Sbjct: 115 APFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSG--GGANGSEVMLGGVDN 172
Query: 129 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188
            H+ G   ++PVT + YWQ  L  I +  Q T  CE GC AIVD+GTS +  P   +  I
Sbjct: 173 SHYTGSIHWIPVTAEKYWQVALDGITVNGQ-TAACE-GCQAIVDTGTSKIVAPVSALANI 230
Query: 189 NHAIGG---EGVVSAECKLVVS 207
              IG    +G +   C  V S
Sbjct: 231 MKDIGASENQGEMMGNCASVQS 252

>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN-----PMGESIIDCDRIP 311
           G +A C  C+  V              K+++ ++ L + + +       GE + +C  + 
Sbjct: 201 GQTAACEGCQAIV---------DTGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQ 251
Query: 312 TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVY 371
           ++P+++FTI      L P  YI    EG    C SG  +  +P     LWI GDVF+  Y
Sbjct: 252 SLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNY 307
Query: 372 HTVFDSGKLRIGFAEAA 388
           +T++D    ++GFA AA
Sbjct: 308 YTIYDRTNNKVGFAPAA 324

>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 55  FIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           FIE T        + L +FDGI+GLG++++++G   PV   +  Q  + + VF+F+L   
Sbjct: 109 FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPF- 167
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D +  G +  GG++ + ++G+ TY  +    YWQ +L D+  GN +         AIVD
Sbjct: 168 -DDKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDL-DLHFGNLTV----EKATAIVD 221
Query: 173 SGTSLLAGPTPVVTEI 188
           SGTS +  PT  + + 
Sbjct: 222 SGTSSITAPTEFLNKF 237

>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
           I  C+  P +P + F     ++ L PE Y+ +  +    +C+   +  DL       +IL
Sbjct: 253 ITTCNN-PKLPTLEFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDL---NKNTFIL 308
Query: 364 GDVFMGVYHTVFDSGKLRIGFAEA 387
           GD FM  Y TVFD     +GFA A
Sbjct: 309 GDPFMRKYFTVFDYDNHTVGFALA 332

>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3 Length = 334

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 90  VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFE 149
           V +N VE+ L++  VFS    R  D E  GEI+FGG D K+  G+ TYVP+     W+F 
Sbjct: 142 VLENFVEENLIAP-VFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFR 200
Query: 150 LGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 193
           L  + IG+  T V   G  AI+D+  +++ GP   V  IN AIG
Sbjct: 201 LDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIG 242

>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3 Length = 334

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 298 NPMGESI--------------IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
           NP+ E+I              +DC +IP++P+V+F I  + FN+S + YI + G     +
Sbjct: 235 NPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNG----NL 290
Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           C SGF     P      + +GD F+  Y++ F+     +GF  +
Sbjct: 291 CYSGFQ----PCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 330

>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2 Length = 330

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 81  EIAVGDAVP----------VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH 130
           ++ VG A P          V +N VE+ L++  VFS    R  D E  GEI+FGG D K+
Sbjct: 121 DVVVGIAAPGCPNALKGKTVLENFVEENLIAP-VFSIHHARFQDGEHFGEIIFGGSDWKY 179
Query: 131 FKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINH 190
             G+ TYVP+     W+F L  + IG+  T V   G  AI+D+  +++ GP   V  IN 
Sbjct: 180 VDGEFTYVPLVGDDSWKFRLDGVKIGD--TTVAPAGTQAIIDTSKAIIVGPKAYVNPINE 237
Query: 191 AIG 193
           AIG
Sbjct: 238 AIG 240

>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2 Length = 330

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 22/104 (21%)
Query: 298 NPMGESI--------------IDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
           NP+ E+I              +DC +IP++P+V+F I  + FN+S + YI + G     +
Sbjct: 233 NPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNG----NL 288
Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           C SGF     P      + +GD F+  Y++ F+     +GF  +
Sbjct: 289 CYSGFQ----PXGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 328

>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 176

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 84  DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 143
Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 144 ALGATFIRKFYTEFDRRNNRIGFALA 169

>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 49  IFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFW 108
           I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+
Sbjct: 102 ITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFY 161
Query: 109 LNRD 112
            NRD
Sbjct: 162 YNRD 165

>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 55  FIEATREGSLT--FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           FIE T    L   +  A FDGI+GLG++++++G   P+   +  Q  + + +F+F+L   
Sbjct: 102 FIEVTDTDDLEPLYTAAEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPV- 160
Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              +  G +  GG++ K ++G+ TY  +    +WQ +L D+  G  S          IVD
Sbjct: 161 -HDKHSGYLTIGGIEEKFYEGELTYEKLNHDLFWQVDL-DVNFGKTSM----EKANVIVD 214
Query: 173 SGTSLLAGPTPVVTEI 188
           SGTS +  PT  + + 
Sbjct: 215 SGTSTITAPTSFINKF 230

>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           MP + F   +  + L PE Y+    +    +C+   +  D+       +ILGD FM  Y 
Sbjct: 254 MPTLEFKSANNTYTLEPEYYMEPLLDIDDTLCMLYILPVDIDKNT---FILGDPFMRKYF 310
Query: 373 TVFDSGKLRIGFAEA 387
           TVFD  K  IGFA A
Sbjct: 311 TVFDYDKESIGFAVA 325

>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 55  FIEATREGSLT--FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           FIE T    L   +    FDGI+GLG++++++G   P+   +  Q  +   +F+F+L   
Sbjct: 150 FIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL--- 206
Query: 113 PDAE-EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           P  +   G +  GG++ K ++G  TY  +    YWQ +L D+  G Q+          IV
Sbjct: 207 PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQTM----EKANVIV 261
Query: 172 DSGTSLLAGPTPVVTEI 188
           DSGT+ +  P+  + + 
Sbjct: 262 DSGTTTITAPSEFLNKF 278

>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
           +  CD    MP + F   +  + L PE Y+    E    +C+   +  D+       +IL
Sbjct: 294 VTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDI---DSNTFIL 349
Query: 364 GDVFMGVYHTVFDSGKLRIGFAEAA 388
           GD FM  Y TVFD  K  +GFA A 
Sbjct: 350 GDPFMRKYFTVFDYDKESVGFAIAK 374

>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 65  TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
           T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L      +  G +  G
Sbjct: 114 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 171
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
           G++ + ++G  TY  +    YWQ  L D  +GN S  + +  C  IVDSGTS +  PT  
Sbjct: 172 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDF 226
Query: 185 VTEI 188
           + ++
Sbjct: 227 LNKM 230

>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 373 TVFDSGKLRIGFAEA 387
           TVFD     +G A A
Sbjct: 311 TVFDYDNHSVGIALA 325

>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 65  TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
           T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L      +  G +  G
Sbjct: 116 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 173
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
           G++ + ++G  TY  +    YWQ  L D  +GN S  + +  C  IVDSGTS +  PT  
Sbjct: 174 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGNIS--LEKANC--IVDSGTSAITVPTDF 228
Query: 185 VTEI 188
           + ++
Sbjct: 229 LNKM 232

>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 373 TVFDSGKLRIGFAEA 387
           TVFD     +G A A
Sbjct: 313 TVFDYDNHSVGIALA 327

>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 55  FIEATREGSLTFLLA--RFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           FIE T    L  + +   FDGI+GLG++++++G   PV   + +Q  +   +F+F+L   
Sbjct: 102 FIEVTDADDLEPIYSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYL--- 158
Query: 113 PDAEEG-GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
           P  ++  G +  GG++   ++G  TY  +    YWQ +L DI  G            A+V
Sbjct: 159 PVHDKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDL-DIHFGK----YVMQKANAVV 213
Query: 172 DSGTSLLAGPTPVVTEI 188
           DSGTS +  PT  + + 
Sbjct: 214 DSGTSTITAPTSFLNKF 230

>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65  TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
           T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L      +  G +  G
Sbjct: 238 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 295
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
           G++ + ++G  TY  +    YWQ  L D  +GN    +       IVDSGTS +  PT  
Sbjct: 296 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 350
Query: 185 VTEI 188
           + ++
Sbjct: 351 LNKM 354

>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 378 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 434
Query: 373 TVFDSGKLRIGFAEAA 388
           TVFD     +G A A 
Sbjct: 435 TVFDYDNHSVGIALAK 450

>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65  TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
           T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L      +  G +  G
Sbjct: 165 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIG 222
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
           G++ + ++G  TY  +    YWQ  L D  +GN    +       IVDSGTS +  PT  
Sbjct: 223 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 277
Query: 185 VTEI 188
           + ++
Sbjct: 278 LNKM 281

>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 305 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 361
Query: 373 TVFDSGKLRIGFAEA 387
           TVFD     +G A A
Sbjct: 362 TVFDYDNHSVGIALA 376

>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65  TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
           T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L      +  G +  G
Sbjct: 114 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 171
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
           G++ + ++G  TY  +    YWQ  L D  +GN    +       IVDSGTS +  PT  
Sbjct: 172 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 226
Query: 185 VTEI 188
           + ++
Sbjct: 227 LNKM 230

>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 373 TVFDSGKLRIGFAEA 387
           TVFD     +G A A
Sbjct: 311 TVFDYDNHSVGIALA 325

>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 65  TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFG 124
           T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L      +  G +  G
Sbjct: 116 TYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV--HDKHTGFLTIG 173
Query: 125 GVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPV 184
           G++ + ++G  TY  +    YWQ  L D  +GN    +       IVDSGTS +  PT  
Sbjct: 174 GIEERFYEGPLTYEKLNHDLYWQITL-DAHVGN----IMLEKANCIVDSGTSAITVPTDF 228
Query: 185 VTEI 188
           + ++
Sbjct: 229 LNKM 232

>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P   FT  +  + L PE Y+    +    +C+   +  D P P    +ILGD FM  Y 
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 373 TVFDSGKLRIGFAEA 387
           TVFD     +G A A
Sbjct: 313 TVFDYDNHSVGIALA 327

>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 56  IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP 113
           IE  +  + +F     DG++GLGF  I    G   P+ DN++ QGL+S  +F  +L +  
Sbjct: 104 IELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAK 162
Query: 114 DAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           +    GE +FGG D   FKG  T VP+   +G+W   +    +G  +      G   I+D
Sbjct: 163 NGGG-GEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDG---ILD 218
Query: 173 SGTSLLAGPTPVVTEINHAIG----GEGVVSAECKLVVSQYGDLIWDL 216
           +GT+LL  P  +   +  A G    G+G  +  C    S++  L++ +
Sbjct: 219 TGTTLLILPNNIAASVARAYGASDNGDGTYTISCD--TSRFKPLVFSI 264

>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 56  IEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLNRDP 113
           IE  +  + +F     DG++GLGF  I    G   P+ DN++ QGL+S  +F  +L +  
Sbjct: 104 IELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPM-DNLISQGLISRPIFGVYLGKAK 162
Query: 114 DAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           +    GE +FGG D   FKG  T VP+   +G+W   +    +G  +      G   I+D
Sbjct: 163 NGGG-GEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDG---ILD 218
Query: 173 SGTSLLAGPTPVVTEINHAIG----GEGVVSAEC 202
           +GT+LL  P  +   +  A G    G+G  +  C
Sbjct: 219 TGTTLLILPNNIAASVARAYGASDNGDGTYTISC 252

>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 73  GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 129
           GI+G+G++    G   D VPV   + +QG++++  +S +LN  PDA  G +I+FGGVD  
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDAATG-QIIFGGVDNA 177
Query: 130 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 189
            + G    +PVT     +  LG + +  ++  +       ++DSGT++      +  +I 
Sbjct: 178 KYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQII 235
Query: 190 HAIGGE 195
            A  G+
Sbjct: 236 KAFNGK 241

>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen From Plasmodium Falciparum Length = 451

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 72  DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 131
           DG+ GLG++++++G   P    +  Q  + + V+S +L   P+ +  G +  GG++ + F
Sbjct: 244 DGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFF 301
Query: 132 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182
            G   Y  +     WQ +L D+  GN    V       I+DS TS++  PT
Sbjct: 302 DGPLNYEKLNHDLMWQVDL-DVHFGN----VSSKKANVILDSATSVITVPT 347

>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen From Plasmodium Falciparum Length = 451

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P + +   +K++ L P+QY+       + +C+   +  DL       ++LGD FM  Y 
Sbjct: 377 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRKYF 433
Query: 373 TVFDSGKLRIGFAEAA 388
           TV+D     +GFA A 
Sbjct: 434 TVYDYDNHTVGFALAK 449

>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 73  GIIGLGFREIAVG---DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 129
           GI+G+G++    G   D VPV   + +QG++++  +S +LN  PD+  G +I+FGGVD  
Sbjct: 122 GILGVGYKTNEAGGSYDNVPVT--LKKQGVIAKNAYSLYLNS-PDSATG-QIIFGGVDNA 177
Query: 130 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 189
            + G    +PVT     +  LG + +  ++  +       ++DSGT++      +  +I 
Sbjct: 178 KYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLLDSGTTITYLQQDLADQII 235
Query: 190 HAIGGE 195
            A  G+
Sbjct: 236 KAFNGK 241

>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From Plasmodium Falciparum Length = 332

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 72  DGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 131
           DG+ GLG++++++G   P    +  Q  + + V+S +L   P+ +  G +  GG++ + F
Sbjct: 125 DGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL--PPENKNKGYLTIGGIEERFF 182
Query: 132 KGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182
            G   Y  +     WQ +L D+  GN    V       I+DS TS++  PT
Sbjct: 183 DGPLNYEKLNHDLMWQVDL-DVHFGN----VSSKKANVILDSATSVITVPT 228

>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From Plasmodium Falciparum Length = 332

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 313 MPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYH 372
           +P + +   +K++ L P+QY+       + +C+   +  DL       ++LGD FM  Y 
Sbjct: 258 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDL---EKNTFVLGDPFMRKYF 314
Query: 373 TVFDSGKLRIGFAEA 387
           TV+D     +GFA A
Sbjct: 315 TVYDYDNHTVGFALA 329

>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 70  RFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFW-----LNRDPDAEEGGEIV 122
           +++GI+GL +  +A   +     +D++V Q  +   VFS       L        GG +V
Sbjct: 115 KWNGILGLAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAGSGTNGGSLV 173
Query: 123 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CEGGCA--AIVDSGTSLLA 179
            GG++P  +KG   Y P+ ++ Y+Q E+  + IG QS  + C    A  AIVDSGT+LL 
Sbjct: 174 LGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLR 233
Query: 180 GPTPVVTEINHAIGGEGVV 198
            P  V   +  A+    ++
Sbjct: 234 LPQKVFDAVVEAVARASLI 252

>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 73  GIIGLGFR-EIAVG--DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK 129
           GI+G+G++   A G  D VPV   +  QG++S+  +S +LN        G+I+FGGVD  
Sbjct: 121 GILGIGYKTHEAEGNYDNVPV--TLKNQGIISKNAYSLYLNSRQ--ATSGQIIFGGVDNA 176
Query: 130 HFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEIN 189
            + G    +PVT     +  L  + +  QS          ++DSGT++      V  ++ 
Sbjct: 177 KYSGTLIALPVTSDNELRIHLNTVKVAGQS---INADVDVLLDSGTTITYLQQGVADQVI 233
Query: 190 HAIGGEGVVSAECKL 204
            A  G+    A   L
Sbjct: 234 SAFNGQETYDANGNL 248

>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 73  GIIGLGFREIAVG----DAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP 128
           GI+G+GF     G    D VPV   + +QG++++  +S +LN + DA  G +I+FGGVD 
Sbjct: 122 GIMGIGFTADEAGYNLYDNVPV--TLKKQGIINKNAYSLYLNSE-DASTG-KIIFGGVDN 177
Query: 129 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL 177
             + G  T +PVT     +  LG I     S          ++DSGT++
Sbjct: 178 AKYTGTLTALPVTSSVELRVHLGSINFDGTSVST---NADVVLDSGTTI 223

>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 73  GIIGLGFR-EIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF 131
           GI+G+G++   A GD   V   +  QG++++  +S +LN  P+A  G +I+FGGVD   +
Sbjct: 122 GILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS-PNAATG-QIIFGGVDKAKY 179
Query: 132 KGKHTYVPVTKKGYWQFELGDI-LIGNQSTGVCEGGCAAIVDSGTSL 177
            G    VPVT     +  L  +  +G        G    ++DSGT++
Sbjct: 180 SGSLIAVPVTSDRELRITLNSLKAVGKN----INGNIDVLLDSGTTI 222

>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 21/157 (13%)
Query: 72  DGIIGLGFREIAVGDAVP--------VWDNMVEQGLVSEEVFSFWLNRDPDAEE---GGE 120
           DGI+G+G  ++ VG   P        V DN+  QG +   + +  ++ +P   E    GE
Sbjct: 102 DGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLA--VSFEPTTSESSTNGE 159
Query: 121 IVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTS 176
           + FG  D   + G  TY P+T       YW      I  G+ ++ +     A IVD+GT+
Sbjct: 160 LTFGATDSSKYTGSITYTPITSTSPASAYWGINQ-SIRYGSSTSILSS--TAGIVDTGTT 216
Query: 177 LLAGPTPVVTEINHAIGG-EGVVSAECKLVVSQYGDL 212
           L    +    +   A G      +   +L  +QY +L
Sbjct: 217 LTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANL 253

>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 73  GIIGLGFREIAVGDAVPV-WDNM----VEQGLVSEEVFSFWLNRDPDAEEG-GEIVFGGV 126
           GI+G+GF+    G+A    +DN+      QG++ +  +S +LN    AE   G+I+FGG+
Sbjct: 122 GILGIGFQS---GEATEFDYDNLPISLRNQGIIGKAAYSLYLN---SAEASTGQIIFGGI 175
Query: 127 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVT 186
           D   + G    +P+T +      L  + +  ++    +     ++DSGT++      +V 
Sbjct: 176 DKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVLLDSGTTISYFTRSIVR 232
Query: 187 EINHAIG--------GEGVVSAECK 203
            I +AIG        G  V  A+CK
Sbjct: 233 NILYAIGAQMKFDSAGNKVYVADCK 257

>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 73  GIIGLGFREI-AVGDA-----VPVWDN----MVEQGLVSEEVFSFWLNRDPDAEEGGEIV 122
           GI+G+G+    AV D       P +DN    + +QG +    +S +LN  P AE G  I+
Sbjct: 116 GILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNS-PSAETG-TII 173
Query: 123 FGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182
           FGGVD   + GK     VT        L  + +   S    +G   A++DSGT+L   P+
Sbjct: 174 FGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDG---ALLDSGTTLTYFPS 230
Query: 183 PVVTEINHAIGGE 195
               ++    G  
Sbjct: 231 DFAAQLADKAGAR 243

>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVASIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
           N
Sbjct: 294 N 294

>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 172
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 173 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 232
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 233 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 278
Query: 236 N 236
           N
Sbjct: 279 N 279

>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
           N
Sbjct: 282 N 282

>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
           N
Sbjct: 282 N 282

>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 236 N 236
           N
Sbjct: 284 N 284

>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 174
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 175 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 234
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 235 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 280
Query: 236 N 236
           N
Sbjct: 281 N 281

>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 236 N 236
           N
Sbjct: 284 N 284

>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
           N
Sbjct: 282 N 282

>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
           N
Sbjct: 282 N 282

>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 117 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 175
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 176 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 235
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 236 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 281
Query: 236 N 236
           N
Sbjct: 282 N 282

>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 119 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 177
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 178 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 237
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 238 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 283
Query: 236 N 236
           N
Sbjct: 284 N 284

>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 118 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 176
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 177 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 236
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 237 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 282
Query: 236 N 236
           N
Sbjct: 283 N 283

>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 192
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 193 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 252
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 253 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 298
Query: 236 N 236
           N
Sbjct: 299 N 299

>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 131 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 189
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 190 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 249
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 250 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 295
Query: 236 N 236
           N
Sbjct: 296 N 296

>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 136 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 194
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 195 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 254
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 255 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 300
Query: 236 N 236
           N
Sbjct: 301 N 301

>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 180
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 181 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 240
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 241 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 286
Query: 236 N 236
           N
Sbjct: 287 N 287

>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 130 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 188
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 189 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 248
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 249 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 294
Query: 236 N 236
           N
Sbjct: 295 N 295

>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 139 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 197
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 198 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 257
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 258 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 303
Query: 236 N 236
           N
Sbjct: 304 N 304

>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 122 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 180
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 181 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 240
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 241 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 286
Query: 236 N 236
           N
Sbjct: 287 N 287

>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 134 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 192
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 193 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 252
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 253 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 298
Query: 236 N 236
           N
Sbjct: 299 N 299

>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
           N
Sbjct: 294 N 294

>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 120 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 178
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 179 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 238
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 239 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 284
Query: 236 N 236
           N
Sbjct: 285 N 285

>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 236 N 236
           N
Sbjct: 297 N 297

>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 236 N 236
           N
Sbjct: 297 N 297

>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 132 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 190
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 191 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 250
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 251 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 296
Query: 236 N 236
           N
Sbjct: 297 N 297

>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
           N
Sbjct: 294 N 294

>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 211
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 212 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 271
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 272 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 317
Query: 236 N 236
           N
Sbjct: 318 N 318

>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 153 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 211
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 212 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 271
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 272 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 317
Query: 236 N 236
           N
Sbjct: 318 N 318

>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
           N
Sbjct: 294 N 294

>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 129 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 187
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 188 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 247
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 248 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 293
Query: 236 N 236
           N
Sbjct: 294 N 294

>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L          +  A  G
Sbjct: 113 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 171
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 172 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 231
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 232 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 277
Query: 236 N 236
           N
Sbjct: 278 N 278

>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L          +  A  G
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 174
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 175 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 234
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 235 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 280
Query: 236 N 236
           N
Sbjct: 281 N 281

>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWL--------NRDPDAEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L          +  A  G
Sbjct: 114 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLQQSEVLASVG 172
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 173 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 232
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 233 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 278
Query: 236 N 236
           N
Sbjct: 279 N 279

>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 234
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 235 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 294
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 295 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 340
Query: 236 N 236
           N
Sbjct: 341 N 341

>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 175 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 233
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 234 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 293
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 294 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 339
Query: 236 N 236
           N
Sbjct: 340 N 340

>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 176 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 234
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSGT
Sbjct: 235 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGT 294
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 295 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 340
Query: 236 N 236
           N
Sbjct: 341 N 341

>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 69  ARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFS-------FWLNRDPD-AEEG 118
           + ++GI+GL + EIA  D    P +D++V+Q  V   +FS       F LN+    A  G
Sbjct: 133 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPN-LFSLQLCGAGFPLNQSEVLASVG 191
Query: 119 GEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV-CE--GGCAAIVDSGT 175
           G ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   + C+      +IVDSG 
Sbjct: 192 GSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGC 251
Query: 176 SLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF 235
           + L  P  V            V S +      ++ D  W      L  + VC Q G   +
Sbjct: 252 TNLRLPKKVFE--------AAVKSIKAASSTEKFPDGFW------LGEQLVCWQAGTTPW 297
Query: 236 N 236
           N
Sbjct: 298 N 298

>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 93  NMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGD 152
           N+ +QGL+S  +FS ++N +      GE+VFGGV+     G   Y  V  + Y  +   D
Sbjct: 157 NLYKQGLISSPLFSVYMNTNSGT---GEVVFGGVNNTLLGGDIAYTDVMSR-YGGYYFWD 212
Query: 153 ILIGNQSTGVCEGGCAAI---------VDSGTSLLAGPTPVVTEINHA 191
             +    TG+   G AA+         +D+GT+    P+   ++I  A
Sbjct: 213 APV----TGITVDGSAAVRFSRPQAFTIDTGTNFFIMPSSAASKIVKA 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	1e-145
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	5e-74
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	8e-40
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	2e-73
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	6e-71
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	9e-37
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	8e-71
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	3e-37
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	4e-68
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	2e-36
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	8e-68
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	7e-38
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	1e-67
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	1e-29
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	9e-67
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	1e-37
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	2e-65
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	6e-35
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	2e-65
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	2e-38
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	4e-64
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	2e-30
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	1e-61
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	3e-27
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	5e-61
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	1e-26
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	1e-60
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	2e-33
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	2e-60
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	2e-31
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	3e-60
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	3e-35
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	8e-60
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	3e-23
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	5e-58
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	1e-23
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	1e-57
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	3e-30
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	7e-57
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	2e-23
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	9e-56
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	2e-25
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	1e-55
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	3e-25
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	4e-55
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	2e-27
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	1e-54
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	2e-23
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	4e-54
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	2e-19
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	1e-51
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	2e-25
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	3e-51
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	1e-25
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	9e-51
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	4e-26
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	3e-49
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	4e-24
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	5e-41
3rfi_A	108	Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber	2e-40
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	3e-13
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	4e-08
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	4e-13
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	3e-08
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	1e-12
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	6e-08
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	5e-08
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	2e-06
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	4e-07
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	5e-07
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	5e-07
1nkl_A	78	NK-lysin; saposin fold, antibacterial peptide, tum	6e-07
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	3e-06
1n69_A	81	Saposin B; lipid binding protein, glycosphingolipi	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2js9_A	99	Saposin-like protein family protein 5; caenopore-5	2e-04

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478

 Score =  420 bits (1081), Expect = e-145
 Identities = 220/339 (64%), Positives = 271/339 (79%), Gaps = 3/339 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT+E  +TFL+A+FDGI+GLGF+EI+VG AVPVW  M+EQGLVS+ VFSFWLNR 
Sbjct: 140 QEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRH 199

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D  EGGEI+FGG+DPKH+ G+HTYVPVT+KGYWQF++GD+L+G +STG C GGCAAI D
Sbjct: 200 VDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIAD 259

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGL 232
           SGTSLLAGPT ++TEIN  IG  GVVS ECK +VSQYG  I DLL++   P+K+C Q+GL
Sbjct: 260 SGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGL 319

Query: 233 CAFNGAEYVSTGIKTVVEK---ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYI 289
           C F+G   VS GI++VV+    ++       +CSACEMAVVW+QNQL Q +T++ +L Y+
Sbjct: 320 CTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYV 379

Query: 290 NELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
           N+LC+ LP+PMGES +DC  + +MP++ FTIG K F L PE+YILK GEG A  CISGF 
Sbjct: 380 NQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFT 439

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct: 440 AMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241

 Score =  229 bits (586), Expect = 5e-74
 Identities = 70/160 (43%), Positives = 109/160 (68%), Gaps = 1/160 (0%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           QVF EAT++  +TF+ A+FDGI+G+ +  I+V + +PV+DN+++Q LV + +FSF+L+RD
Sbjct: 8   QVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRD 67

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           PDA+ GGE++ GG D K++KG  +Y+ VT+K YWQ  L  + + +  T +C+ GC AIVD
Sbjct: 68  PDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVD 126

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL 212
           +GTSL+ GP   V E+  AIG   ++  E  +   +   L
Sbjct: 127 TGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKVSTL 166

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241

 Score =  140 bits (356), Expect = 8e-40
 Identities = 48/105 (45%), Positives = 69/105 (65%)

Query: 284 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
             +  + +   ++P   GE +I C+++ T+P ++  +G K + LSPE Y LK  +    +
Sbjct: 137 DEVRELQKAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTL 196

Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct: 197 CLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239

 Score =  228 bits (583), Expect = 2e-73
 Identities = 91/142 (64%), Positives = 107/142 (75%), Gaps = 4/142 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT E    FL   FDGI+GL F+ I+V    PVW NM+ QGLV E  FSFWLNR+
Sbjct: 101 QDFIEATDEADNVFLHRLFDGILGLSFQTISV----PVWYNMLNQGLVKERRFSFWLNRN 156

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D EEGGE+VFGG+DP HF+G HTYVPVT + YWQF +GD+LIG++STG C  GC A  D
Sbjct: 157 VDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFAD 216

Query: 173 SGTSLLAGPTPVVTEINHAIGG 194
           SGTSLL+GPT +VT+INHAIG 
Sbjct: 217 SGTSLLSGPTAIVTQINHAIGA 238

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score =  224 bits (573), Expect = 6e-71
 Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F  +  E    F+ A+FDGI+GL +  ++V +A      MV++G ++  VFS +L+  
Sbjct: 99  QEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQ 158

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                GG +VFGGVD   + G+  + PVT++ YWQ  + + LIG Q++G C  GC AIVD
Sbjct: 159 -QGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVD 217

Query: 173 SGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVS 207
           +GTSLL  P   ++ +  A G +    G     C  + +
Sbjct: 218 TGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQN 256

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score =  135 bits (341), Expect = 9e-37
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 285 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 344
            +S + +   +  +  G+ +++C+ I  +P+++F I    F L P  YIL         C
Sbjct: 229 YMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNG----YC 284

Query: 345 ISGFMAFDLPPPRG-PLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
             G     L    G PLWILGDVF+  Y++V+D G  R+GFA AA
Sbjct: 285 TVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score =  224 bits (574), Expect = 8e-71
 Identities = 67/158 (42%), Positives = 96/158 (60%), Gaps = 4/158 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F E+  E   TF+ A FDGI+GLG+  +AVG   PV+DNM+ Q LV   +FS +++ +
Sbjct: 110 QQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSN 169

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P+   G E++FGG D  HF G   +VPVTK+ YWQ  L +I +G      C  GC AIVD
Sbjct: 170 PEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGT-VMFCSEGCQAIVD 228

Query: 173 SGTSLLAGPTPVVTEINHAIGG---EGVVSAECKLVVS 207
           +GTSL+ GP+  + ++ +AIG    +G  + EC  +  
Sbjct: 229 TGTSLITGPSDKIKQLQNAIGAAPVDGEYAVECANLNV 266

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score =  136 bits (345), Expect = 3e-37
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query: 300 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 359
            GE  ++C  +  MP+V+FTI    + LSP  Y L       + C SGF   D+ PP GP
Sbjct: 254 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGP 313

Query: 360 LWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           LWILGDVF+  +++VFD G  R+G A A
Sbjct: 314 LWILGDVFIRQFYSVFDRGNNRVGLAPA 341

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score =  217 bits (555), Expect = 4e-68
 Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 7/160 (4%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNR- 111
           Q F EAT E  LTF   +FDGI+GLG+  I+V   VP + N ++Q L+ E+ F+F+L   
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
             D E GGE  FGG+D   FKG  T++PV +K YW+ +   I +G++   +      A +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELE--SHGAAI 217

Query: 172 DSGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVS 207
           D+GTSL+  P+ +   IN  IG +    G  + +C    +
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDN 257

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score =  134 bits (339), Expect = 2e-36
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 284 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
            +   IN    +     G+  +DC+    +P++ F      F + P  Y L+        
Sbjct: 229 GLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGS---- 284

Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           CIS     D P P GPL I+GD F+  Y++++D G   +G A+A
Sbjct: 285 CISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score =  218 bits (556), Expect = 8e-68
 Identities = 60/144 (41%), Positives = 96/144 (66%), Gaps = 3/144 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+ NRD
Sbjct: 149 QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 208

Query: 113 PD--AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAI 170
            +     GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+  T +CE GC A+
Sbjct: 209 SENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLAL 267

Query: 171 VDSGTSLLAGPTPVVTEINHAIGG 194
           VD+G S ++G T  + ++  A+G 
Sbjct: 268 VDTGASYISGSTSSIEKLMEALGA 291

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score =  139 bits (352), Expect = 7e-38
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 297 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 356

Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 357 ALGATFIRKFYTEFDRRNNRIGFALA 382

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score =  215 bits (550), Expect = 1e-67
 Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 8/159 (5%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q    +T+E    F  A FDGI+G+ +  +A   ++PV+DNM+ + LV++++FS +++R+
Sbjct: 101 QTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN 160

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                   +  G +DP ++ G   +VPVT + YWQF +  + I       CEGGC AI+D
Sbjct: 161 GQ---ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILD 216

Query: 173 SGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLVVS 207
           +GTS L GP+  +  I  AIG      G    +C  +  
Sbjct: 217 TGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSY 255

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score =  115 bits (291), Expect = 1e-29
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 285 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 344
            +  I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +        C
Sbjct: 228 DILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQG----FC 283

Query: 345 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            SGF + +        WILGDVF+  Y++VFD     +G A+A
Sbjct: 284 TSGFQSENH----SQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score =  214 bits (546), Expect = 9e-67
 Identities = 60/144 (41%), Positives = 96/144 (66%), Gaps = 3/144 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG++ E+VFSF+ NRD
Sbjct: 106 QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRD 165

Query: 113 PD--AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAI 170
            +     GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+  T +CE GC A+
Sbjct: 166 SENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSS-TLLCEDGCLAL 224

Query: 171 VDSGTSLLAGPTPVVTEINHAIGG 194
           VD+G S ++G T  + ++  A+G 
Sbjct: 225 VDTGASYISGSTSSIEKLMEALGA 248

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score =  137 bits (348), Expect = 1e-37
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 254 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 313

Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 314 ALGATFIRKFYTEFDRRNNRIGFALA 339

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score =  210 bits (536), Expect = 2e-65
 Identities = 60/158 (37%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q   E+  E       A FDGI+GL +  IA   AVPV+DNM  Q LV +++FSF+L+  
Sbjct: 99  QELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGG 158

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                G E++ GGVD  H+ G   ++PVT + YWQ  L  I +  Q+      GC AIVD
Sbjct: 159 G--ANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQT--AACEGCQAIVD 214

Query: 173 SGTSLLAGPTPVVTEINHAIGGE---GVVSAECKLVVS 207
           +GTS +  P   +  I   IG     G +   C  V S
Sbjct: 215 TGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQS 252

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score =  130 bits (328), Expect = 6e-35
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 300 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 359
            GE + +C  + ++P+++FTI      L P  YI          C SG  +  +P     
Sbjct: 240 QGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGDQA----FCTSGLGSSGVPSNTSE 295

Query: 360 LWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           LWI GDVF+  Y+T++D    ++GFA AA
Sbjct: 296 LWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score =  211 bits (539), Expect = 2e-65
 Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 7/159 (4%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q+F  +  E       A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ +
Sbjct: 143 QIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN 202

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              + G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  ++   C GGC AIVD
Sbjct: 203 D--DSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVD 259

Query: 173 SGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLVVS 207
           +GTSLL GPT  +  I   IG     +G +   C  + S
Sbjct: 260 TGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDS 298

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score =  140 bits (356), Expect = 2e-38
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 4/104 (3%)

Query: 285 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 344
            ++ I     +  N  GE +I C  I ++P++ FTI    + LSP  YIL+  +     C
Sbjct: 271 AIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS----C 326

Query: 345 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            SGF   D+P   G LWILGDVF+  Y+TVFD    ++G A  A
Sbjct: 327 TSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score =  207 bits (528), Expect = 4e-64
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 12/163 (7%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIA-VGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q  + A         +   D ++G+             V +N VE+ L++  VFS    R
Sbjct: 103 QDIVLADELSQ-EVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLIAP-VFSIHHAR 160

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
             D E  GEI+FGG D K+  G+ TYVP+     W+F L  + IG+ +  V   G  AI+
Sbjct: 161 FQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTT--VAPAGTQAII 218

Query: 172 DSGTSLLAGPTPVVTEINHAIGG-------EGVVSAECKLVVS 207
           D+  +++ GP   V  IN AIG          +   +C  + S
Sbjct: 219 DTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPS 261

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score =  117 bits (296), Expect = 2e-30
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 297 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 356
                   +DC +IP++P+V+F I  + FN+S + YI + G     +C SGF     P  
Sbjct: 246 TTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQNGN----LCYSGFQ----PCG 297

Query: 357 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
               + +GD F+  Y++ F+     +GF  +
Sbjct: 298 HSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 328

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score =  200 bits (510), Expect = 1e-61
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 7/144 (4%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREI-AVGDAVPVWDNMVEQGLVSEEVFSFWLNR 111
           Q    A RE + +F     DG++GLGF  I  V       DN++ QGL+S  +F  +L +
Sbjct: 102 QTIELAKREAA-SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK 160

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAI 170
             +   GGE +FGG D   FKG  T VP+   +G+W   +    +G             I
Sbjct: 161 AKNG-GGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTS---TVASSFDGI 216

Query: 171 VDSGTSLLAGPTPVVTEINHAIGG 194
           +D+GT+LL  P  +   +  A G 
Sbjct: 217 LDTGTTLLILPNNIAASVARAYGA 240

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score =  109 bits (274), Expect = 3e-27
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 285 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 344
           + + +     +  N  G   I CD       + F+I    F +SP+  + +  +G    C
Sbjct: 230 IAASVARAYGASDNGDGTYTISCDTSA-FKPLVFSINGASFQVSPDSLVFEEFQGQ---C 285

Query: 345 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           I+GF             I+GD F+   + VF+ G   +  A  A
Sbjct: 286 IAGFG-----YGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score =  199 bits (509), Expect = 5e-61
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 53  QVFIEATREGSLTFLLA-----RFDGIIGLGFREIAVGDA------VPVWDNMVEQGLVS 101
           Q           T   +       DGI G  + +    +A        V  N+ +QGL+S
Sbjct: 106 QTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLIS 165

Query: 102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKG----YWQFELGDILIGN 157
             VFS ++N +     GG++VFGGV+     G   Y  V K      +W   +  + I  
Sbjct: 166 SPVFSVYMNTNDG---GGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDG 222

Query: 158 QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC 202
                 +G  A  +D+GT+    P+    ++  A   +   S + 
Sbjct: 223 SDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQG 267

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score =  108 bits (271), Expect = 1e-26
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 297 PNPMGESIIDCDRIP-TMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM-AFDLP 354
                   + C +   +    S  +     +       +   + +  V  SG    F + 
Sbjct: 262 TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVL 321

Query: 355 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           P  G  +I+G++F+  +  V+D GK RIGFA  A
Sbjct: 322 PDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score =  199 bits (508), Expect = 1e-60
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 55  FIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           FIE T    L   +    FDGI+GLG++++++G   P+   +  Q  +   +F+F+L   
Sbjct: 150 FIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVH 209

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                 G +  GG++ K ++G  TY  +    YWQ +L D+  G Q           IVD
Sbjct: 210 D--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDL-DVHFGKQ----TMEKANVIVD 262

Query: 173 SGTSLLAGPTPVVTEINHAIGG 194
           SGT+ +  P+  + +    +  
Sbjct: 263 SGTTTITAPSEFLNKFFANLNV 284

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score =  127 bits (320), Expect = 2e-33
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 289 INELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGF 348
                + +  P     +       MP + F   +  + L PE Y+    E    +C+   
Sbjct: 278 FFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITM 337

Query: 349 MAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           +  D+       +ILGD FM  Y TVFD  K  +GFA A
Sbjct: 338 LPVDID---SNTFILGDPFMRKYFTVFDYDKESVGFAIA 373

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score =  201 bits (512), Expect = 2e-60
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 53  QVFIEATREGSLT--FLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN 110
             FIE T        +  +  DG+ GLG++++++G   P    +  Q  + + V+S +L 
Sbjct: 223 YKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLP 282

Query: 111 RDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAI 170
              + +  G +  GG++ + F G   Y  +     WQ +L D+  GN    V       I
Sbjct: 283 P--ENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDL-DVHFGN----VSSKKANVI 335

Query: 171 VDSGTSLLAGPTPVVTEINHAIGGE 195
           +DS TS++  PT    +   +    
Sbjct: 336 LDSATSVITVPTEFFNQFVESASVF 360

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score =  122 bits (309), Expect = 2e-31
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 284 KVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
           +  +   E       P     +       +P + +   +K++ L P+QY+       + +
Sbjct: 348 EFFNQFVESASVFKVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYLEPLENIFSAL 407

Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           C+   +  DL       ++LGD FM  Y TV+D     +GFA A
Sbjct: 408 CMLNIVPIDLE---KNTFVLGDPFMRKYFTVYDYDNHTVGFALA 448

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score =  200 bits (510), Expect = 3e-60
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 55  FIEATREGSL--TFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           FIE         T+  + FDGI+GLG++++++G   P+   +  Q  +   +F+F+L   
Sbjct: 226 FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 285

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
              +  G +  GG++ + ++G  TY  +    YWQ  L           +       IVD
Sbjct: 286 D--KHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAH-----VGNIMLEKANCIVD 338

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAEC 202
           SGTS +  PT  + ++   +    V     
Sbjct: 339 SGTSAITVPTDFLNKMLQNLDVIKVPFLPF 368

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score =  133 bits (337), Expect = 3e-35
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 285 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 344
            L+ + +  D +  P     +       +P   FT  +  + L PE Y+    +    +C
Sbjct: 350 FLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLC 409

Query: 345 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           +   +  D P    P +ILGD FM  Y TVFD     +G A A
Sbjct: 410 MLNIIGLDFPV---PTFILGDPFMRKYFTVFDYDNHSVGIALA 449

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score =  197 bits (502), Expect = 8e-60
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 13/175 (7%)

Query: 53  QVFIEATREGSLTFLL--ARFDGIIGLGFREIAVGD--AVPVWDNMVEQGLVSEEVFSFW 108
            +   AT   S  F L   +++GI+GL +  +A         +D++V Q  +   VFS  
Sbjct: 96  FLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPN-VFSMQ 154

Query: 109 L-----NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVC 163
           +             GG +V GG++P  +KG   Y P+ ++ Y+Q E+  + IG QS  + 
Sbjct: 155 MCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLD 214

Query: 164 ---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWD 215
                   AIVDSGT+LL  P  V   +  A+    ++        +      W 
Sbjct: 215 CREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWT 269

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score = 99.1 bits (247), Expect = 3e-23
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 303 SIIDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 356
                      P +S  + D+         + P+ YI              F       P
Sbjct: 268 WTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFG----ISP 323

Query: 357 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
                ++G   M  ++ +FD  + R+GFA +
Sbjct: 324 STNALVIGATVMEGFYVIFDRAQKRVGFAAS 354

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score =  194 bits (495), Expect = 5e-58
 Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGD--AVPVWDNMVEQGLVSEEVFSFWLN 110
                 T         + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L 
Sbjct: 159 ANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLC 217

Query: 111 R--------DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV 162
                    +  A  GG ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   +
Sbjct: 218 GAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKM 277

Query: 163 C---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWD 215
                    +IVDSGT+ L  P  V      +I                   + W 
Sbjct: 278 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQ 333

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score =  101 bits (252), Expect = 1e-23
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 303 SIIDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGEGI--AEVCISGFMAFDLP 354
                      P +S  +  ++        + P+QY+    +     + C    +     
Sbjct: 332 WQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI----- 386

Query: 355 PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
                  ++G V M  ++ VFD  + RIGFA +A
Sbjct: 387 SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 420

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score =  190 bits (484), Expect = 1e-57
 Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVP--------VWDNMVEQGLVSEEV 104
           Q    A+R+          DGI+G+G  ++ VG   P        V DN+  QG +   +
Sbjct: 87  QSIGVASRDSGFDG----VDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNL 142

Query: 105 FSFWLNR-DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQS 159
            +        ++   GE+ FG  D   + G  TY P+T       YW          + S
Sbjct: 143 LAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTS 202

Query: 160 TGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC 202
                   A IVD+GT+L    +    +   A G     +   
Sbjct: 203 ---ILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGL 242

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score =  117 bits (296), Expect = 3e-30
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG-----EGIAEVCISGFMAFDLPP 355
           G   +   +   + ++ FTIG + F L+    I          G A              
Sbjct: 241 GLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDS 300

Query: 356 PRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
             G  +I G  F+  +++V+D+   R+G A  +
Sbjct: 301 GEGLDFINGLTFLERFYSVYDTTNKRLGLATTS 333

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score =  190 bits (483), Expect = 7e-57
 Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGD--AVPVWDNMVEQGLVSEEVFSFWLN 110
                 T         + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L 
Sbjct: 106 ANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLC 164

Query: 111 R--------DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV 162
                    +  A  GG ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   +
Sbjct: 165 GAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKM 224

Query: 163 C---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWD 215
                    +IVDSGT+ L  P  V      +I                   + W 
Sbjct: 225 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQ 280

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score =   99 bits (249), Expect = 2e-23
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 300 MGESIIDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGEGI--AEVCISGFMAF 351
           +             P +S  +  ++        + P+QY+    +     + C    +  
Sbjct: 276 LVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI-- 333

Query: 352 DLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
                     ++G V M  ++ VFD  + RIGFA +A
Sbjct: 334 ---SQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 367

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score =  185 bits (471), Expect = 9e-56
 Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVW---DNMVEQGLVSEEVFSFWL 109
           Q    ATR  +         G++GL F         P      N      ++E +F+  L
Sbjct: 104 QGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNA--ASSLAEPLFTADL 161

Query: 110 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCA 168
                    G   FG +D    KG   Y PV   +G+W+F      +G     +      
Sbjct: 162 RHGQ----NGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGK--LNRNSID 215

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGG 194
            I D+GT+LL     VV      +  
Sbjct: 216 GIADTGTTLLLLDDNVVDAYYANVQS 241

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score =  104 bits (261), Expect = 2e-25
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
           + V+        S      +  +  D    +P+ SF +G     +  +   L   E  + 
Sbjct: 229 DNVVDAYYANVQSAQYDNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLNLTPLEEGSS 288

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAE 386
            C  G            + I GDV +     VFD G  R+G+A+
Sbjct: 289 TCFGGLQ----SSSGIGINIFGDVALKAALVVFDLGNERLGWAQ 328

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score =  185 bits (471), Expect = 1e-55
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVP-VWDNMVEQGLVSEEVFSFWLNR 111
           QV  +               GI+G+G++    G +   V   + +QG++++  +S +LN 
Sbjct: 109 QVLADVDSTSI-------DQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNS 161

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
                  G+I+FGGVD   + G    +PVT     +  LG + +  ++  +       ++
Sbjct: 162 PD--AATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKT--INTDNVDVLL 217

Query: 172 DSGTSLLAGPTPVVTEINHAIGG 194
           DSGT++      +  +I  A  G
Sbjct: 218 DSGTTITYLQQDLADQIIKAFNG 240

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score =  103 bits (260), Expect = 3e-25
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGD-KIFNLSPEQYILKTGEGIA 341
           ++++   N       N      +DC+      +V F        ++   ++         
Sbjct: 232 DQIIKAFNGKLTQDSNGNSFYEVDCN---LSGDVVFNFSKNAKISVPASEFAASLQGD-- 286

Query: 342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
                 +    L        ILGD F+   + V+D     I  A+ 
Sbjct: 287 --DGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLAQV 330

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score =  184 bits (468), Expect = 4e-55
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 14/144 (9%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDA--VPVWDNMVEQGLVSEEVFSFWLN 110
           Q+F             +   GI+G+GF+     +     +  ++  QG++ +  +S +LN
Sbjct: 109 QLFANVWST-------SARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLN 161

Query: 111 RDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAI 170
                   G+I+FGG+D   + G    +P+T +      L  + +  ++    +     +
Sbjct: 162 SAE--ASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRN---VDANTNVL 216

Query: 171 VDSGTSLLAGPTPVVTEINHAIGG 194
           +DSGT++      +V  I +AIG 
Sbjct: 217 LDSGTTISYFTRSIVRNILYAIGA 240

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score =  109 bits (275), Expect = 2e-27
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKI-FNLSPEQYILKTGEGIA 341
             +L  I              + DC    T   + F  G+ +  ++   +++ +T     
Sbjct: 232 RNILYAIGAQMKFDSAGNKVYVADCK---TSGTIDFQFGNNLKISVPVSEFLFQTYYT-- 286

Query: 342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
                 F   ++        ILGD F+   + V++    +I  A  
Sbjct: 287 --SGKPFPKCEVRIRESEDNILGDNFLRSAYVVYNLDDKKISMAPV 330

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score =  182 bits (463), Expect = 1e-54
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVW---DNMVEQGLVSEEVFSFWL 109
           Q    A +  S     +  DG++GL F  +            DN   +  +   VF+  L
Sbjct: 103 QAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNA--KASLDSPVFTADL 160

Query: 110 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCA 168
                    G   FG +D   + G  TY  V TK+G+W++      +G+ +         
Sbjct: 161 GYHA----PGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGT--FKSTSID 214

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGG 194
            I D+GT+LL  P  VV+     + G
Sbjct: 215 GIADTGTTLLYLPATVVSAYWAQVSG 240

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 296 LPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPP 355
             + +G  +  C    T+P+ +F +G     +  +          +  C  G        
Sbjct: 243 SSSSVGGYVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQ----SS 296

Query: 356 PRGPLWILGDVFMGVYHTVFDSG-KLRIGFA 385
               + I GDV +     VF+      +GFA
Sbjct: 297 AGIGINIFGDVALKAAFVVFNGATTPTLGFA 327

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score =  180 bits (460), Expect = 4e-54
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWLN 110
           Q F + T         +   GI+G+GF     G  +   V   + +QG++++  +S +LN
Sbjct: 109 QQFADVTTT-------SVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLN 161

Query: 111 RDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAI 170
            +      G+I+FGGVD   + G  T +PVT     +  LG I     S          +
Sbjct: 162 SED--ASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTS---VSTNADVV 216

Query: 171 VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 207
           +DSGT++         +    +G       E   + S
Sbjct: 217 LDSGTTITYFSQSTADKFARIVGATWDSRNEIYRLPS 253

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 285 VLSYINELCDSLPNPMGES-IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEV 343
                  +  +  +   E   +    +      +F  G K   +   + ILK  +    +
Sbjct: 230 TADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFDQGVK-ITVPLSELILKDSDS--SI 286

Query: 344 CISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           C  G              ILGD F+   + V+D     I  A+ 
Sbjct: 287 CYFGISR-------NDANILGDNFLRRAYIVYDLDDKTISLAQV 323

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score =  174 bits (444), Expect = 1e-51
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 22/152 (14%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGF------REIAVGDAVPVWDN----MVEQGLVSE 102
           Q   + T+        +   GI+G+G+       + +     P +DN    + +QG +  
Sbjct: 103 QQIADVTQT-------SVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRT 155

Query: 103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV 162
             +S +LN    + E G I+FGGVD   + GK     VT        L  + +   S   
Sbjct: 156 NAYSLYLNSP--SAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSS--- 210

Query: 163 CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 194
              G  A++DSGT+L   P+    ++    G 
Sbjct: 211 FSFGDGALLDSGTTLTYFPSDFAAQLADKAGA 242

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score =  104 bits (261), Expect = 2e-25
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
            ++          +        IDC+   +   V          +   +Y+ + G+G   
Sbjct: 234 AQLADKAGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNTEYVYQNGDGT-- 291

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            C+ G    D         ILGD F+   + +++     I  A+ 
Sbjct: 292 -CLWGIQPSDD-------TILGDNFLRHAYLLYNLDANTISIAQV 328

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score =  173 bits (441), Expect = 3e-51
 Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 13/146 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVW---DNMVEQGLVSEEVFSFWL 109
           Q    A +  S        DG++GL F  I      P     DN+  +  +SE +F+  L
Sbjct: 100 QAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNV--KSSLSEPIFAVAL 157

Query: 110 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCA 168
             +      G   FG  D   + G  TY  V   +G+W F      IG+ S         
Sbjct: 158 KHNA----PGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDS---SSDSIT 210

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGG 194
            I D+GT+LL     +V      + G
Sbjct: 211 GIADTGTTLLLLDDSIVDAYYEQVNG 236

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score =  105 bits (263), Expect = 1e-25
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
           + ++    E  +       +         ++P+ S TIGD    +  E            
Sbjct: 224 DSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVG---- 279

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
                F             I GDVF+   + VFD+   R+GFA  A
Sbjct: 280 -NGQTFGGIQSNSG-IGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score =  172 bits (437), Expect = 9e-51
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQGLVSEEVFSFWL 109
           Q    A++  S        DG++GL F  I           +D +  Q  +   +F+  L
Sbjct: 99  QAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQL 156

Query: 110 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCA 168
             D      G   FG +D   + G  TY    + +GYW F      IG+ S      G +
Sbjct: 157 KHDA----PGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGS--SSSSGFS 210

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGG 194
           AI D+GT+L+     +V+     + G
Sbjct: 211 AIADTGTTLILLDDEIVSAYYEQVSG 236

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score =  105 bits (265), Expect = 4e-26
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 297 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 356
               G  +  C     +P+ +  IGD    +  +          +  C  G         
Sbjct: 240 SYEAGGYVFSCS--TDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGIQ----SNS 293

Query: 357 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
              L ILGDVF+   + VF+S   ++GFA  A
Sbjct: 294 GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score =  168 bits (427), Expect = 3e-49
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 14/146 (9%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQGLVSEEVFSFWL 109
           Q    A +  +        DG++GL F  I           +D +  +  +++ +F+  L
Sbjct: 100 QAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTV--KSSLAQPLFAVAL 157

Query: 110 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCA 168
                    G   FG +D   + G  TY  V   +G+W F +     G+Q       G +
Sbjct: 158 KHQQ----PGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQ----SGDGFS 209

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGG 194
            I D+GT+LL     VV++    + G
Sbjct: 210 GIADTGTTLLLLDDSVVSQYYSQVSG 235

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score =  100 bits (251), Expect = 4e-24
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 304 IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWIL 363
           + DC     +P+ S +I      +                C+ G              I 
Sbjct: 246 VFDCS--TNLPDFSVSISGYTATVPGSLINYGPSGD-GSTCLGGIQ----SNSGIGFSIF 298

Query: 364 GDVFMGVYHTVFDSGKLRIGFAEAA 388
           GD+F+   + VFDS   ++GFA  A
Sbjct: 299 GDIFLKSQYVVFDSDGPQLGFAPQA 323

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87

 Score =  138 bits (350), Expect = 5e-41
 Identities = 57/87 (65%), Positives = 64/87 (73%), Gaps = 1/87 (1%)

Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           E  +DC+ + +MPNVSFTIG K F L+PEQYILK G+G A  CISGF A D     GPLW
Sbjct: 2   ELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLW 60

Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           ILGDVFM  YHTVFD G L +GFAEAA
Sbjct: 61  ILGDVFMRPYHTVFDYGNLLVGFAEAA 87

>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum} Length = 108

 Score =  137 bits (347), Expect = 2e-40
 Identities = 64/105 (60%), Positives = 86/105 (81%), Gaps = 2/105 (1%)

Query: 195 EGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN- 253
             +VS ECK +VSQYG++IWDLLVSG+ P++VC Q GLC  +GA++VS+ IKTVVE+E  
Sbjct: 4   MAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETE 63

Query: 254 -VSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 297
             S G++ +C+ACEMAVVW+QNQLKQ+ TKEKVL Y+N+LC+ +P
Sbjct: 64  GSSVGEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP 108

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Length = 91

 Score = 63.9 bits (155), Expect = 3e-13
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 159 STGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLI 213
           S   CE  C  +V   T L+        EI  A           +S EC+ VV  YG  I
Sbjct: 4   SDVYCEV-CEFLVKEVTKLIDNNK-TEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSI 61

Query: 214 WDLLVSGLLPEKVCQQIGLC 233
             +L+  + PE VC  + LC
Sbjct: 62  LSILLEEVSPELVCSMLHLC 81

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Length = 91

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI 310
               C  CE  V  V   +   +T++++L   +++C  LP  + E   +C  +
Sbjct: 4   SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE---ECQEV 53

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Length = 80

 Score = 63.4 bits (154), Expect = 4e-13
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 161 GVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWD 215
           G CE  C  +V      L   +    EI  A+             +C   V++Y  ++ +
Sbjct: 3   GFCEV-CKKLVGYLDRNLEKNS-TKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIE 60

Query: 216 LLVSGLLPEKVCQQIGLC 233
           +LV  + P  VC +IG C
Sbjct: 61  ILVEVMDPSFVCLKIGAC 78

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Length = 80

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 302
           D   C  C+  V ++   L++  TK+++L+ + + C  LP+P  +
Sbjct: 1   DGGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQK 45

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Length = 83

 Score = 61.9 bits (150), Expect = 1e-12
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 158 QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDL 212
            S   CE  C  +V   T L+        EI  A           +S EC+ VV  YG  
Sbjct: 2   DSDVYCEV-CEFLVKEVTKLIDNNK-TEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSS 59

Query: 213 IWDLLVSGLLPEKVCQQIGLC 233
           I  +L+  + PE VC  + LC
Sbjct: 60  ILSILLEEVSPELVCSMLHLC 80

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Length = 83

 Score = 48.8 bits (116), Expect = 6e-08
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI 310
                C  CE  V  V   +   +T++++L   +++C  LP  + E   +C  +
Sbjct: 2   DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE---ECQEV 52

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Length = 83

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI 310
           S  C  C+  V    + LK   T+E++L Y+ + CD LP P       C  I
Sbjct: 3   SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP--NMSASCKEI 52

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Length = 83

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 198 VSAECKLVVSQYGDLIWDLLVSGL-LPEKVCQQIGLC 233
           +SA CK +V  Y  +I D++   +  P +VC  + LC
Sbjct: 45  MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLC 81

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 306 DCDRIPTMPNVSFTI---GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWI 362
           + ++I   P+V   +      ++ +S E  +++   G+   C       +          
Sbjct: 306 NSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGV--TC---LGVMNGGMQPRAEIT 360

Query: 363 LGDVFMGVYHTVFDSGKLRIGFAEA 387
           LG   +     VFD  + R+GF+ +
Sbjct: 361 LGARQLEENLVVFDLARSRVGFSTS 385

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 24/153 (15%), Positives = 44/153 (28%), Gaps = 27/153 (17%)

Query: 58  ATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEE 117
           A        L     G+ GLG   I++        N +      +  F+  L+R P +  
Sbjct: 142 APSFLVQKGLPRNTQGVAGLGHAPISL-------PNQLASHFGLQRQFTTCLSRYPTS-- 192

Query: 118 GGEIVFGGVDPKHFKGK---------HTYVPVTKKGYWQFELGDILIGNQSTGV------ 162
            G I+FG       + +          T + +T +G +   +  I I   S         
Sbjct: 193 KGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISS 252

Query: 163 ---CEGGCAAIVDSGTSLLAGPTPVVTEINHAI 192
                     ++ + T  +     V        
Sbjct: 253 TIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVF 285

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413

 Score = 50.7 bits (120), Expect = 5e-07
 Identities = 15/127 (11%), Positives = 37/127 (29%), Gaps = 12/127 (9%)

Query: 263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI-- 320
           S  +        +   +             C S  N +          P++P++   +  
Sbjct: 282 SIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNIL-----STRLGPSVPSIDLVLQS 336

Query: 321 GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL 380
              ++ ++    ++   + +  VC       D         ++G   +      FD    
Sbjct: 337 ESVVWTITGSNSMVYINDNV--VC---LGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATS 391

Query: 381 RIGFAEA 387
           R+GF+  
Sbjct: 392 RVGFSGT 398

>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1 Length = 78

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 196 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 233
            ++   CK ++  +   I   +++G  P+ +C  I +C
Sbjct: 39  KILRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKIC 76

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 291 ELCDSLPNPMGESIIDCDRIPTMPNVSFT-IGDKIFNLSPEQYILKTGEGIAEVCISGFM 349
            +C                   +PNV     G   + ++ +  ++   +G A V      
Sbjct: 280 GVCYDTKTLGNNLGG-----YAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMK 334

Query: 350 AFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFA 385
                  R P  ILG   M  +   FD  K R+GF+
Sbjct: 335 GVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370

>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3 Length = 81

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 196 GVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 233
             ++  CK  +SQY ++   +++  + P+++C  +G C
Sbjct: 43  PGMADICKNYISQYSEIAIQMMMH-MQPKEICALVGFC 79

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 33/216 (15%), Positives = 58/216 (26%), Gaps = 57/216 (26%)

Query: 145 YW-----QFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----- 194
           +W           +L   Q           I  + TS     + +   I+          
Sbjct: 185 FWLNLKNCNSPETVLEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 195 EGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENV 254
           +      C LV+      + +         K        AFN         K ++     
Sbjct: 239 KSKPYENCLLVL----LNVQN--------AKAWN-----AFNL------SCKILLTTRFK 275

Query: 255 SAGDS-AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP------NPM-----GE 302
              D  +  +   +++      L   + K  +L Y++     LP      NP       E
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 303 SIID-CDRIPTMPNVSF-----TIGDKIFNLSPEQY 332
           SI D         +V+       I   +  L P +Y
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 40/245 (16%), Positives = 68/245 (27%), Gaps = 84/245 (34%)

Query: 141 TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSA 200
            + G  Q++  DIL   +   V    C  + D        P  +++              
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-------PKSILS------------KE 49

Query: 201 ECKLVVSQYGD------LIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENV 254
           E   ++           L W LL      E++ Q+          +V       V + N 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQK----------FVEE-----VLRINY 91

Query: 255 SAGDSAVCSACEMAVVWVQNQLKQ--KQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT 312
                           ++ + +K   +Q       YI +  D L N       D      
Sbjct: 92  K---------------FLMSPIKTEQRQPSMMTRMYIEQR-DRLYN-------DNQVFAK 128

Query: 313 MPNVS-----FTIGDKIFNLSPEQYIL---KTGEG----IAEVCISGFMAFDLPPPRGPL 360
             NVS       +   +  L P + +L     G G      +VC+S              
Sbjct: 129 Y-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKIF 185

Query: 361 WI-LG 364
           W+ L 
Sbjct: 186 WLNLK 190

>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A Length = 99

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 184 VVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC 233
              E           + EC   V+   D I   L  G  P+ VC ++  C
Sbjct: 49  FDAECKKLFHTIPFGTRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNEC 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	100.0
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	100.0
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	100.0
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	100.0
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	100.0
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	100.0
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	100.0
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	100.0
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	100.0
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	100.0
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	100.0
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	100.0
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	100.0
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	100.0
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	100.0
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	100.0
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	100.0
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	100.0
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	100.0
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	100.0
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	100.0
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	100.0
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	100.0
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	100.0
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	100.0
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	100.0
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	100.0
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	100.0
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	100.0
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	100.0
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	100.0
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	100.0
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	100.0
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	100.0
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	99.96
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	99.84
3rfi_A	108	Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber	99.79
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	97.56
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	97.4
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	97.35
2qyp_A	91	Proactivator polypeptide; saposin, activator prote	97.29
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	97.27
2js9_A	99	Saposin-like protein family protein 5; caenopore-5	97.23
1nkl_A	78	NK-lysin; saposin fold, antibacterial peptide, tum	97.22
3bqp_A	80	Proactivator polypeptide; saposin, sphingolipid ac	97.21
1of9_A	77	Pore-forming peptide ameobapore A; toxin, saplip,	97.15
2gtg_A	83	Proactivator polypeptide; saposin, sphingolipid ac	97.1
1l9l_A	74	Granulysin; saposin fold, membrane-lytic, antimicr	97.1
1of9_A	77	Pore-forming peptide ameobapore A; toxin, saplip,	97.06
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	96.98
1n69_A	81	Saposin B; lipid binding protein, glycosphingolipi	96.88
1nkl_A	78	NK-lysin; saposin fold, antibacterial peptide, tum	96.81
1n69_A	81	Saposin B; lipid binding protein, glycosphingolipi	96.79
1l9l_A	74	Granulysin; saposin fold, membrane-lytic, antimicr	96.42
2js9_A	99	Saposin-like protein family protein 5; caenopore-5	96.36
3s64_A	87	AC-SLP-1, saposin-like protein 1; lipid-binding, l	95.52
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	91.21

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2

Probab=100.00  E-value=1.6e-67  Score=544.94  Aligned_cols=363  Identities=62%  Similarity=1.115  Sum_probs=314.8

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.++|+++.|+|+++   ++++++|.||+++.+.+..|...++|||||||++.++..+..|+|++|++||+|++
T Consensus       113 ~i~Yg~Gs~~G~~~~Dtv~ig---~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~  189 (478)
T 1qdm_A          113 AIQYGTGSIAGYFSEDSVTVG---DLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSD  189 (478)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSS
T ss_pred             EEEcCCCCeEEEEEEEEEEEC---CeEECCEEEEEEEecCCcccccccccceecccccccccCCCCcHHHHHHHCCCCCC
Confidence            588988889999999999999   89999999999998877667777889999999999987778899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||+++++...+|+|+|||+|++++.|++.|+|+.+.+||.+.+++|+++++.+.++..+..+++||||+++++|+
T Consensus       190 ~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~  269 (478)
T 1qdm_A          190 PVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPT  269 (478)
T ss_dssp             SEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECH
T ss_pred             CEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccCCCeEEEEEeEEEECCEEEeecCCCceEEEcCCCCceeCCH
Confidence            99999999864334589999999999999999999999999999999999999999877666788999999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecc---cccCCCC
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKE---NVSAGDS  259 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~---~~~~~~~  259 (388)
                      +++++|.+++++.++++.+|+++|++|++.|+++|.+++.|+++|+++++|.+++.+.++.+++.|++++   +.+..+.
T Consensus       270 ~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  349 (478)
T 1qdm_A          270 AIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRAD  349 (478)
T ss_dssp             HHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC---------------------------CH
T ss_pred             HHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccCcccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999988888888888875   3345677


Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEG  339 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~  339 (388)
                      ..|.+|||||.|++++|++|+|+++|+.+++++|.++|...|.|.++|+.+.++|+|+|+|+|+.|+|+|++|+++..++
T Consensus       350 ~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~  429 (478)
T 1qdm_A          350 PMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEG  429 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTTCCCEEEEETTEEEEECHHHHEEECSCG
T ss_pred             ccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeecccccccccEEEEECCEEEEEChHHhEEEccCC
Confidence            89999999999999999999999999999999999999999999999998889999999999999999999999987654


Q ss_pred             cccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          340 IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       340 ~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ....|+++|+..+.+++.++.||||++|||++|+|||++++|||||++|
T Consensus       430 ~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~  478 (478)
T 1qdm_A          430 AAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA  478 (478)
T ss_dssp             GGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence            4568999999888766667899999999999999999999999999986

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=100.00  E-value=6.9e-48  Score=387.86  Aligned_cols=259  Identities=36%  Similarity=0.750  Sum_probs=232.2

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.++|+++.|+|+++   +++++ |.||+++.+++..|....+|||||||++.++..+..|+|++|++||+|++
T Consensus       123 ~i~Yg~Gs~~G~~~~Dtv~ig---~~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~  198 (383)
T 2x0b_A          123 TLRYSTGTVSGFLSQDIITVG---GITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKE  198 (383)
T ss_dssp             EEECSSCEEEEEEEEEEEEET---TEEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSS
T ss_pred             EEEcCCccEEEEEEeeEEEEc---CceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCC
Confidence            688999999999999999999   89999 99999999877667778899999999999988888899999999999999


Q ss_pred             ceEEEEecCCCCCC--CCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          103 EVFSFWLNRDPDAE--EGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       103 ~~FSl~L~~~~~~~--~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++||+||+++++..  .+|+|+|||+|+++++|+++|+|+.+.+||.|.+++|+++++.+. +..++.+++||||+++++
T Consensus       199 ~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~~~~w~v~l~~i~v~~~~~~-~~~~~~aiiDTGTs~~~l  277 (383)
T 2x0b_A          199 DVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISG  277 (383)
T ss_dssp             SEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSSTTSCEEEECEEEESSCCCB-STTCEEEEECTTCSSEEE
T ss_pred             CEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCCCceEEEEEeEEEeCCceEE-cCCCcEEEEcCCCceEEc
Confidence            99999999874321  489999999999999999999999999999999999999998753 567889999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |++++++|.+++++.                                                                 
T Consensus       278 P~~~~~~i~~~i~a~-----------------------------------------------------------------  292 (383)
T 2x0b_A          278 STSSIEKLMEALGAK-----------------------------------------------------------------  292 (383)
T ss_dssp             CHHHHHHHHHHHTCE-----------------------------------------------------------------
T ss_pred             CHHHHHHHHHHhCCc-----------------------------------------------------------------
Confidence            999999999999653                                                                 


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCc
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI  340 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~  340 (388)
                                                          + ..+.|.++|+.+.++|+|+|+|+|+.++|+|++|+++..+.+
T Consensus       293 ------------------------------------~-~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~  335 (383)
T 2x0b_A          293 ------------------------------------K-RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSS  335 (383)
T ss_dssp             ------------------------------------E-CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCT
T ss_pred             ------------------------------------c-cCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCC
Confidence                                                1 235688999988899999999999999999999999865444


Q ss_pred             ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          341 AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       341 ~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ...|+++|+..+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus       336 ~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~  383 (383)
T 2x0b_A          336 KKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  383 (383)
T ss_dssp             TSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence            568999999887665567899999999999999999999999999985

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=100.00  E-value=1.4e-47  Score=383.18  Aligned_cols=255  Identities=38%  Similarity=0.728  Sum_probs=228.5

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|.|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+..|....+|||||||+++++..+.+|++++|++||+|++
T Consensus       116 ~i~Yg~Gs~~G~~~~Dtv~ig---~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~  192 (370)
T 3psg_A          116 SITYGTGSMTGILGYDTVQVG---GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQ  192 (370)
T ss_dssp             EEESSSCEEEEEEEEEEEEET---TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSS
T ss_pred             EEEeCCceEEEEEEEEEEeeC---CcccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCHHHHHHHCCCCCC
Confidence            688999999999999999999   89999999999998877778888899999999999988888899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||++..  ...|+|+|||+|++++.|+++|+|+.+.+||.|.+++|+++++.+. +..++.+++||||+++++|+
T Consensus       193 ~~FS~~L~~~~--~~~G~l~fGg~D~~~y~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~  269 (370)
T 3psg_A          193 DLFSVYLSSND--DSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPT  269 (370)
T ss_dssp             SEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEH
T ss_pred             CEEEEEEccCC--CCCeEEEEEeeChHhcCCcceeecccccceeEEEEeEEEECCEEEe-cCCCceEEEcCCCCcEECCH
Confidence            99999999863  2489999999999999999999999999999999999999998764 56788999999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++..                                                                  
T Consensus       270 ~~~~~i~~~i~a~~------------------------------------------------------------------  283 (370)
T 3psg_A          270 SAIANIQSDIGASE------------------------------------------------------------------  283 (370)
T ss_dssp             HHHHHHHHHTTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999999997541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...|.|.++|+...++|+|+|+|+|..++|+|++|+++ .   .+
T Consensus       284 -----------------------------------~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~-~---~~  324 (370)
T 3psg_A          284 -----------------------------------NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ-D---DD  324 (370)
T ss_dssp             -----------------------------------CTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEE-C---SS
T ss_pred             -----------------------------------cCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhccc-C---CC
Confidence                                               23466999999888899999999999999999999998 2   34


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus       325 ~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~  370 (370)
T 3psg_A          325 SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence            7999999887655556689999999999999999999999999986

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=100.00  E-value=6.1e-47  Score=355.32  Aligned_cols=240  Identities=48%  Similarity=0.926  Sum_probs=211.7

Q ss_pred             ceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCcceEEEEecCCCCCCCCcEEEECCC
Q 016530           47 LQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGV  126 (388)
Q Consensus        47 ~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgi  126 (388)
                      |+++++|.||+++.+++..|....+|||||||++.++....+|++++|++||+|++++||+||++.++....|+|+|||+
T Consensus         2 g~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~   81 (241)
T 1lya_B            2 GVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGT   81 (241)
T ss_dssp             CEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSC
T ss_pred             CeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCc
Confidence            79999999999999877667777889999999999887778899999999999999999999998754334899999999


Q ss_pred             CCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhh
Q 016530          127 DPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVV  206 (388)
Q Consensus       127 d~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~  206 (388)
                      |+++++|+++|+|+.+.+||.+.+++|+++++.+ .+..+..+++||||+++++|++++++|.+++++..          
T Consensus        82 d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~-~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~----------  150 (241)
T 1lya_B           82 DSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVP----------  150 (241)
T ss_dssp             CGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCE-ESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE----------
T ss_pred             CHHHcCCceEEEECccccEEEEEEeEEEECCeeE-eccCCCEEEEECCCccccCCHHHHHHHHHHhCCee----------
Confidence            9999999999999999999999999999999875 24567899999999999999999999999996541          


Q ss_pred             hhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHH
Q 016530          207 SQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVL  286 (388)
Q Consensus       207 ~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~  286 (388)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (241)
T 1lya_B          151 --------------------------------------------------------------------------------  150 (241)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHh
Q 016530          287 SYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDV  366 (388)
Q Consensus       287 ~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~  366 (388)
                                 ...+.|.++|+...++|+|+|.|+|++++|+|++|+++..+.....|++.|+..+.+.+.++.||||++
T Consensus       151 -----------~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~  219 (241)
T 1lya_B          151 -----------LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDV  219 (241)
T ss_dssp             -----------EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHH
T ss_pred             -----------ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechH
Confidence                       013568899998778999999999999999999999987644456899999987655445678999999


Q ss_pred             hhcceEEEEeCCCCeEEEEecC
Q 016530          367 FMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       367 Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      |||++|+|||++++|||||+++
T Consensus       220 fl~~~y~vfD~~~~~igfA~~~  241 (241)
T 1lya_B          220 FIGRYYTVFDRDNNRVGFAEAA  241 (241)
T ss_dssp             HHTTEEEEEETTTTEEEEEEEC
T ss_pred             HhcceEEEEECCCCEEEEEEcC
Confidence            9999999999999999999985

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=100.00  E-value=7.6e-46  Score=366.87  Aligned_cols=260  Identities=40%  Similarity=0.740  Sum_probs=227.1

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+..|....+|||||||++.++.....+++++|++||+|++
T Consensus        83 ~i~Yg~Gs~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~  159 (351)
T 1tzs_A           83 SIQYGTGSLSGIIGADQVSVE---GLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDL  159 (351)
T ss_dssp             EEESSSCEEEEEEEEEEEEET---TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHHHHHTTCCSS
T ss_pred             EEEeCCCCeEEEEEEeEEEEC---CeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHHHHHCCCCCC
Confidence            688888889999999999999   89999999999998777667777889999999999887778899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||++.++....|.|+|||+|++++.|++.|+|+.+.+||.|.+++|+++++.+. +..+..+++||||+++++|+
T Consensus       160 ~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTs~~~lP~  238 (351)
T 1tzs_A          160 PMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMF-CSEGCQAIVDTGTSLITGPS  238 (351)
T ss_dssp             SEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSEETTEEEEEEEEEETTEEEE-CTTCEEEEECTTCSSEEECH
T ss_pred             CEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCCCceEEEEeCEEEECCceEE-cCCCceEEeccCCcceeCCH
Confidence            99999999875433489999999999999999999999999999999999999998753 45678899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++..                                                                  
T Consensus       239 ~~~~~l~~~~~~~~------------------------------------------------------------------  252 (351)
T 1tzs_A          239 DKIKQLQNAIGAAP------------------------------------------------------------------  252 (351)
T ss_dssp             HHHHHHHHHHTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999999996541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         .. +.|.++|..+.++|+|+|+|+|..++|+|++|+++....+..
T Consensus       253 -----------------------------------~~-g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~  296 (351)
T 1tzs_A          253 -----------------------------------VD-GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQ  296 (351)
T ss_dssp             -----------------------------------CS-SSEEECGGGGGGSCCEEEEETTEEEEECTTTSEECC-----C
T ss_pred             -----------------------------------cC-CeEEEeCCCCccCCcEEEEECCEEEEECHHHhEeeccCCCCC
Confidence                                               11 568899998778999999999999999999999976543346


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|+++|+..+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus       297 ~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~  342 (351)
T 1tzs_A          297 FCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAV  342 (351)
T ss_dssp             CEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred             eEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECC
Confidence            8999999876554456789999999999999999999999999975

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=100.00  E-value=1.2e-45  Score=362.20  Aligned_cols=259  Identities=36%  Similarity=0.747  Sum_probs=228.8

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|.|+.+.+.|.++.|+|+++   ++++ +|.||+++...+..|....+|||||||++.++.....|++++|++||+|++
T Consensus        80 ~i~Yg~gs~~G~~~~D~v~ig---~~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~  155 (341)
T 3k1w_A           80 TLRYSTGTVSGFLSQDIITVG---GITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKE  155 (341)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSS
T ss_pred             EEEECCcEEEEEEEEEEEEEC---Ccee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCCCHHHHHHHCCCCCC
Confidence            688888889999999999999   8999 999999998766556677889999999999887778899999999999999


Q ss_pred             ceEEEEecCCC--CCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          103 EVFSFWLNRDP--DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       103 ~~FSl~L~~~~--~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++||+||.+..  +....|.|+|||+|++++.|+++|+|+.+.+||.|.+++|+++++.+. +..+..+++||||+++++
T Consensus       156 ~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~l  234 (341)
T 3k1w_A          156 DVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISG  234 (341)
T ss_dssp             SEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSSTTSCEEEECCEEETTEEEE-CTTCEEEEECTTCSSEEE
T ss_pred             CEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCCCCEEEEEEeEEEECCEEee-cCCCCEEEEECCCChhcC
Confidence            99999999875  223489999999999999999999999999999999999999998753 456788999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |++++++|.+++++..                                                                
T Consensus       235 P~~~~~~i~~~~~~~~----------------------------------------------------------------  250 (341)
T 3k1w_A          235 STSSIEKLMEALGAKK----------------------------------------------------------------  250 (341)
T ss_dssp             CHHHHHHHHHHHTCEE----------------------------------------------------------------
T ss_pred             CHHHHHHHHHHcCCee----------------------------------------------------------------
Confidence            9999999999996541                                                                


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCc
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI  340 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~  340 (388)
                                                           ...| |.++|+...++|+|+|+|+|..++|+|++|+++.....
T Consensus       251 -------------------------------------~~~g-~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~  292 (341)
T 3k1w_A          251 -------------------------------------RLFD-YVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSS  292 (341)
T ss_dssp             -------------------------------------CSSC-EEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCT
T ss_pred             -------------------------------------cCCC-eEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCC
Confidence                                                 1124 89999987789999999999999999999999865544


Q ss_pred             ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          341 AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       341 ~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ...|++.|+..+.+...++.||||++|||++|+|||++++|||||+++
T Consensus       293 ~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~  340 (341)
T 3k1w_A          293 KKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  340 (341)
T ss_dssp             TSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence            678999999877654556789999999999999999999999999985

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=100.00  E-value=1.5e-45  Score=361.08  Aligned_cols=257  Identities=36%  Similarity=0.685  Sum_probs=227.3

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+..|.....|||||||++.++.....|++++|++||+|++
T Consensus        72 ~i~Yg~gs~~G~~~~D~v~~g---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~  148 (329)
T 1htr_B           72 SLQYGSGSLTGFFGYDTLTVQ---SIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTS  148 (329)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSS
T ss_pred             EEEeCCCCeEEEEEeeeEEEc---ceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHHhcCCCCC
Confidence            578888888999999999999   89999999999998766667667889999999999888778899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||++.+.. ..|.|+|||+|+++++|++.|+|+.+.+||.|.+++|+++++.+..+..+..+++||||+++++|+
T Consensus       149 ~~Fs~~L~~~~~~-~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~  227 (329)
T 1htr_B          149 PVFSVYLSNQQGS-SGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQ  227 (329)
T ss_dssp             SEEEEEECSSCSS-EEEEEEESSCCGGGEEEEEEEEEBCSSSSCEEEECEEEETTEECCTTTTCEEEEECTTCCSEEEEG
T ss_pred             CEEEEEEcCCCCC-CCcEEEEcccCHHHcCCceEEEECCCCceEEEEEeEEEECCceeeecCCCceEEEecCCccEECCH
Confidence            9999999987431 379999999999999999999999999999999999999998764345678999999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++..                                                                  
T Consensus       228 ~~~~~l~~~~~~~~------------------------------------------------------------------  241 (329)
T 1htr_B          228 QYMSALLQATGAQE------------------------------------------------------------------  241 (329)
T ss_dssp             GGHHHHHHHHTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCee------------------------------------------------------------------
Confidence            99999999996541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|....++|+|+|+|+|..++|+|++|+++..    +
T Consensus       242 -----------------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g  282 (329)
T 1htr_B          242 -----------------------------------DEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNN----G  282 (329)
T ss_dssp             -----------------------------------CTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECS----S
T ss_pred             -----------------------------------cCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCC----C
Confidence                                               1135588999987789999999999999999999999864    3


Q ss_pred             ceeEeeEeccCCCCCCC-ceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGP-LWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~-~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..+.+.+.++ .||||++|||++|+|||++++|||||+++
T Consensus       283 ~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~  329 (329)
T 1htr_B          283 YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA  329 (329)
T ss_dssp             CEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence            89999998765444556 89999999999999999999999999985

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=100.00  E-value=3.2e-45  Score=358.76  Aligned_cols=256  Identities=34%  Similarity=0.635  Sum_probs=226.2

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+..|.....|||||||++.++.....+++++|++||+|++
T Consensus        73 ~i~Yg~Gs~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~  149 (329)
T 1dpj_A           73 AIQYGTGSLEGYISQDTLSIG---DLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDE  149 (329)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSS
T ss_pred             EEEECCceEEEEEEEEEEEEC---CeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHHHhcCCcCC
Confidence            688888889999999999999   89999999999998766456667789999999999887777889999999999999


Q ss_pred             ceEEEEecCCCC-CCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccC
Q 016530          103 EVFSFWLNRDPD-AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP  181 (388)
Q Consensus       103 ~~FSl~L~~~~~-~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP  181 (388)
                      ++||+||.+... ....|+|+|||+|++++.|++.|+|+.+.+||.|.+++|+++++.+.  ..+..+++||||+++++|
T Consensus       150 ~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lP  227 (329)
T 1dpj_A          150 KRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAE--LESHGAAIDTGTSLITLP  227 (329)
T ss_dssp             SEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE--CSSCEEEECTTCSCEEEC
T ss_pred             CEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCCCceEEEEeeeEEECCeEec--CCCccEEeeCCCCcEECC
Confidence            999999987532 23479999999999999999999999999999999999999998764  356789999999999999


Q ss_pred             HHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcc
Q 016530          182 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV  261 (388)
Q Consensus       182 ~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (388)
                      ++++++|.+++++.                                                                  
T Consensus       228 ~~~~~~l~~~~~~~------------------------------------------------------------------  241 (329)
T 1dpj_A          228 SGLAEMINAEIGAK------------------------------------------------------------------  241 (329)
T ss_dssp             HHHHHHHHHHHTCE------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCc------------------------------------------------------------------
Confidence            99999999999643                                                                  


Q ss_pred             cchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcc
Q 016530          262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA  341 (388)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~  341 (388)
                                                         +...+.|.++|+...++|+|+|+|+|..++|+|++|+++..    
T Consensus       242 -----------------------------------~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----  282 (329)
T 1dpj_A          242 -----------------------------------KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVS----  282 (329)
T ss_dssp             -----------------------------------ECTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEEET----
T ss_pred             -----------------------------------cCCCCeEEEECCCCCcCCcEEEEECCEEEEECHHHhEecCC----
Confidence                                               02245688999987789999999999999999999999753    


Q ss_pred             cceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       342 ~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ..|++.|+..+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus       283 ~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  329 (329)
T 1dpj_A          283 GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI  329 (329)
T ss_dssp             TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence            57999999876554456789999999999999999999999999985

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=100.00  E-value=5.1e-45  Score=356.82  Aligned_cols=250  Identities=36%  Similarity=0.658  Sum_probs=222.1

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.++|.++.|+|+++   ++++++|.||+++.+.+..|.....|||||||++.++....++++++|++||+|++
T Consensus        74 ~i~Yg~Gs~~G~~~~D~v~ig---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~  150 (323)
T 3cms_A           74 SIHYGTGSMQGILGYDTVTVS---NIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQ  150 (323)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSS
T ss_pred             EEEeCCCCeEEEEEEEEEEEC---CeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHHHHHHCCCCCC
Confidence            678888888999999999999   89999999999998766556667789999999999988788899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.+.+.   .|+|+|||+|++++.|++.|+|+.+.+||.+.+++|+++++.+. +..+..+++||||+++++|+
T Consensus       151 ~~FS~~l~~~~~---~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTt~~~lP~  226 (323)
T 3cms_A          151 DLFSVYMDRNGQ---ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPS  226 (323)
T ss_dssp             SEEEEECCTTSS---CEEEEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE-STTCEEEEECTTCCSEEECH
T ss_pred             CEEEEEECCCCC---CEEEEECCCChhhccCceEEEECccCCeEEEEEeeEEECCEEee-cCCCcEEEEecCCccEeCCH
Confidence            999999998642   49999999999999999999999999999999999999998764 34678899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++..                                                                  
T Consensus       227 ~~~~~l~~~~~~~~------------------------------------------------------------------  240 (323)
T 3cms_A          227 SDILNIQQAIGATQ------------------------------------------------------------------  240 (323)
T ss_dssp             HHHHHHHHHHTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCee------------------------------------------------------------------
Confidence            99999999996531                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|....++|+|+|+|+|..++|+|++|+++    ...
T Consensus       241 -----------------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~----~~~  281 (323)
T 3cms_A          241 -----------------------------------NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQG  281 (323)
T ss_dssp             -----------------------------------ETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEEE----ETT
T ss_pred             -----------------------------------cCCCcEEEECCCCccCceEEEEECCEEEEECHHHhccC----CCC
Confidence                                               12356889999888999999999999999999999998    246


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..+    .++.||||++|||++|+|||++++|||||+++
T Consensus       282 ~C~~~i~~~~----~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  323 (323)
T 3cms_A          282 FCTSGFQSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKAI  323 (323)
T ss_dssp             EEEESEEEC-------CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEEeCC----CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence            8999998653    34689999999999999999999999999985

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=100.00  E-value=6.1e-45  Score=356.03  Aligned_cols=253  Identities=35%  Similarity=0.615  Sum_probs=225.0

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+..|.....|||||||++.++.....|++++|++||+|++
T Consensus        72 ~i~Yg~Gs~~G~~~~D~v~~g---~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~  148 (324)
T 1am5_A           72 DLTYGTGGMRGILGQDTVSVG---GGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEK  148 (324)
T ss_dssp             EEECSSCEEEEEEEEEEEESS---SSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSS
T ss_pred             EEEECCCCeEEEEEECceeEC---CcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHhHHhcCCCCC
Confidence            678888888999999999999   89999999999998876667667889999999999887778899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||++.+.  ..|.|+|||+|++++.|++.|+|+.+.+||.|.+++|+++++.+. +.. ..+++||||+++++|+
T Consensus       149 ~~FS~~l~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~-~~aiiDSGTt~~~lp~  224 (324)
T 1am5_A          149 DLFSFYLSGGGA--NGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAA-CEG-CQAIVDTGTSKIVAPV  224 (324)
T ss_dssp             SEEEEECCSTTC--SCEEEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECC-CCC-EEEEECTTCSSEEECT
T ss_pred             CEEEEEecCCCC--CCcEEEECccCHHHcCCceEEEecCCCcEEEEEEeEEEECCceee-ccC-ceEEEecCCccEECCH
Confidence            999999998642  489999999999999999999999989999999999999998753 233 8899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++.                                                                   
T Consensus       225 ~~~~~l~~~~~~~-------------------------------------------------------------------  237 (324)
T 1am5_A          225 SALANIMKDIGAS-------------------------------------------------------------------  237 (324)
T ss_dssp             TTHHHHHHHHTCE-------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCc-------------------------------------------------------------------
Confidence            9999999998531                                                                   


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|....++|+|+|+|+|..++|+|++|+++.    ..
T Consensus       238 -----------------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~~  278 (324)
T 1am5_A          238 -----------------------------------ENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD----QA  278 (324)
T ss_dssp             -----------------------------------ECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES----SS
T ss_pred             -----------------------------------ccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccC----CC
Confidence                                               013458899998889999999999999999999999976    46


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus       279 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~  324 (324)
T 1am5_A          279 FCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA  324 (324)
T ss_dssp             CEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred             eEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence            8999999876544456789999999999999999999999999985

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=100.00  E-value=7.4e-45  Score=354.14  Aligned_cols=250  Identities=36%  Similarity=0.660  Sum_probs=223.8

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|.|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+..|....+|||||||++.++.....+++++|++||+|++
T Consensus        71 ~i~Yg~gs~~G~~~~D~v~ig---~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~  147 (320)
T 4aa9_A           71 SIHYGTGSMEGFLGYDTVTVS---NIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVAR  147 (320)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSS
T ss_pred             EEEECCcEEEEEEEEEEEEEC---CEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHHhCCCCCC
Confidence            678888889999999999999   89999999999998876567777789999999999988788899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.+.   ...|+|+|||+|++++.|+++|+|+.+.+||.+.+++|+++++.+. +..+..+++||||+++++|+
T Consensus       148 ~~Fs~~l~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~lP~  223 (320)
T 4aa9_A          148 DLFSVYMDRN---GQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPS  223 (320)
T ss_dssp             SEEEEECCSS---SSCCEEEETCCCGGGEEEEEEEEECSSBTTBEEEECEEEETTEEEE-STTCEEEEECTTCSSEEEEH
T ss_pred             ceEEEEeCCC---CCCeEEEEcccCHHHccCceEEEEcccCCceEEEEeEEEECCEEec-cCCCcEEEEECCCCcEECCH
Confidence            9999999986   2589999999999999999999999999999999999999998775 34577899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++++..                                                                  
T Consensus       224 ~~~~~i~~~~~~~~------------------------------------------------------------------  237 (320)
T 4aa9_A          224 SDILKIQMAIGATE------------------------------------------------------------------  237 (320)
T ss_dssp             HHHHHHHHHTTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999999996531                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|+...++|+|+|+|+|..++|+|++|+.+    ...
T Consensus       238 -----------------------------------~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~----~~~  278 (320)
T 4aa9_A          238 -----------------------------------NRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSK----DQG  278 (320)
T ss_dssp             -----------------------------------CTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEE----ETT
T ss_pred             -----------------------------------cCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccC----CCC
Confidence                                               12456899999888899999999999999999999976    236


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..    +.++.||||++|||++|+|||++++|||||+++
T Consensus       279 ~C~~~i~~~----~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~  320 (320)
T 4aa9_A          279 FCTSGFQGD----NNSELWILGDVFIREYYSVFDRANNRVGLAKAI  320 (320)
T ss_dssp             EEEESEEEE----TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEEEcC----CCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence            899999863    234679999999999999999999999999986

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=100.00  E-value=5.1e-45  Score=358.45  Aligned_cols=250  Identities=29%  Similarity=0.457  Sum_probs=220.9

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccc-cCCCCchhhhhhhcCCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIA-VGDAVPVWDNMVEQGLVS  101 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s-~~~~~~~~~~L~~qg~i~  101 (388)
                      .|.|+.+.+.|.++.|+|+++   ++++++|.||+++.+ +..|....+|||||||++.++ ....++++++|++||+| 
T Consensus        76 ~i~Yg~Gs~~G~~~~Dtv~ig---~~~~~~~~fg~~~~~-~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i-  150 (330)
T 1yg9_A           76 VKFFDTGSAVGRGIEDSLTIS---QLTTSQQDIVLADEL-SQEVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLI-  150 (330)
T ss_dssp             EEETTTEEEEEEEEEEEEEET---TEEEEEEEEEEEEEE-CTHHHHTTCSEEEECSCTTSCCTTSCCCHHHHHHHTTSS-
T ss_pred             EEEECCceEEEEEEEEEEEEC---CEEEcCeEEEEEEEc-ccccccccCceEEEcCcchhccccCCCCHHHHHHhcCCC-
Confidence            578888888999999999999   899999999999987 545666778999999999888 66788999999999999 


Q ss_pred             cceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccC
Q 016530          102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP  181 (388)
Q Consensus       102 ~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP  181 (388)
                      +++||+||++.++....|+|+|||+|+++++|++.|+|+.+.+||.|.+++|+++++.+.  ..+..+++||||+++++|
T Consensus       151 ~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~--~~~~~aiiDSGTs~~~lP  228 (330)
T 1yg9_A          151 APVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGP  228 (330)
T ss_dssp             CSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSCTTSCCEECSEEEETTEEEE--CTTCEEEECTTCSSEEEE
T ss_pred             CceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCCCCEEEEEeCeEEECCEEEc--CCCcEEEEecCCccccCC
Confidence            999999999874333489999999999999999999999999999999999999998764  467889999999999999


Q ss_pred             HHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcc
Q 016530          182 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV  261 (388)
Q Consensus       182 ~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (388)
                      ++++++|.+++++..                                                                 
T Consensus       229 ~~~~~~l~~~~~~~~-----------------------------------------------------------------  243 (330)
T 1yg9_A          229 KAYVNPINEAIGCVV-----------------------------------------------------------------  243 (330)
T ss_dssp             HHHHHHHHHHHTCEE-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCcc-----------------------------------------------------------------
Confidence            999999999996541                                                                 


Q ss_pred             cchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCC--ce-eecCCCCCCCCcEEEEECCEEEEeCcccceeeecc
Q 016530          262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMG--ES-IIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE  338 (388)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~--~~-~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~  338 (388)
                                                          ...|  .| .+||+....+|+|+|+|+|+.++|+|++|+++.  
T Consensus       244 ------------------------------------~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~y~~~~--  285 (330)
T 1yg9_A          244 ------------------------------------EKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQN--  285 (330)
T ss_dssp             ------------------------------------EECSSCEEEEECGGGGGGSCCEEEEETTEEEEECHHHHEEEE--
T ss_pred             ------------------------------------cCCCceEEEEEECCCccccCcEEEEECCEEEEECHHHhcccC--
Confidence                                                0123  57 899998778999999999999999999999976  


Q ss_pred             CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          339 GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       339 ~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                        ...|++.|+..    +.++.||||++|||++|+|||++++|||||+++
T Consensus       286 --~~~C~~~i~~~----~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~  329 (330)
T 1yg9_A          286 --GNLCYSGFQPC----GHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV  329 (330)
T ss_dssp             --TTEEEESEEEE----TTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             --CCcEEEEEEeC----CCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence              36899999865    234689999999999999999999999999975

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=100.00  E-value=5e-43  Score=350.84  Aligned_cols=249  Identities=28%  Similarity=0.493  Sum_probs=220.3

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEe----eCCccccccCccEEEeeccCccccCCCCchhhhhhhcC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATR----EGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~----~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg   98 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++ .||+++.    ++  .|....+|||||||++.++....+|++++|++||
T Consensus       122 ~i~Yg~Gs~~G~~~~Dtv~ig---~~~v~~-~Fg~~~~~~~~~~--~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg  195 (375)
T 1miq_A          122 DITYGSGTVKGFFSKDLVTLG---HLSMPY-KFIEVTDTDDLEP--IYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQN  195 (375)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEE-EEEEEEECGGGTT--HHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTT
T ss_pred             EEEeCCCeEEEEEEEEEEEEc---CceECc-EEEEEEecccccc--ccccCCCceEEeCCCCcccccCCCCHHHHHHhcc
Confidence            678888889999999999999   899999 9999998    54  4656678999999999998878889999999999


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCc
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLL  178 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i  178 (388)
                      +|++++||+||.+.+.  ..|.|+|||+|++++.|++.|+|+.+.+||.|.++ |+++++.+    .+..+++||||+++
T Consensus       196 ~i~~~~FS~~L~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~-i~v~g~~~----~~~~aiiDSGTs~~  268 (375)
T 1miq_A          196 KIDNALFTFYLPVHDV--HAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----EKANVIVDSGTTTI  268 (375)
T ss_dssp             SSSSSEEEEECCTTCT--TEEEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEE----EEEEEEECTTBSSE
T ss_pred             CcCCCEEEEEecCCCC--CCeEEEEcccCHHHcCCceEEEecCCCceEEEEEE-EEECCEEc----ccceEEecCCCccE
Confidence            9999999999998732  58999999999999999999999999999999999 99999876    45689999999999


Q ss_pred             ccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCC
Q 016530          179 AGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD  258 (388)
Q Consensus       179 ~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  258 (388)
                      ++|++++++|.+++++..                                                              
T Consensus       269 ~lP~~~~~~l~~~~~~~~--------------------------------------------------------------  286 (375)
T 1miq_A          269 TAPSEFLNKFFANLNVIK--------------------------------------------------------------  286 (375)
T ss_dssp             EECHHHHHHHHHHHTCEE--------------------------------------------------------------
T ss_pred             EcCHHHHHHHHHHhCCcc--------------------------------------------------------------
Confidence            999999999999996530                                                              


Q ss_pred             CcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeecc
Q 016530          259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE  338 (388)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~  338 (388)
                                                            +...+.|.++|.. ..+|+|+|+|+|..++|+|++|+++...
T Consensus       287 --------------------------------------~~~~g~~~~~C~~-~~~P~i~f~f~g~~~~l~~~~yi~~~~~  327 (375)
T 1miq_A          287 --------------------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPILE  327 (375)
T ss_dssp             --------------------------------------CTTSSCEEEETTC-TTCCCEEEECSSCEEEECGGGSEEESSS
T ss_pred             --------------------------------------cCCCCeEEEECCC-CCCCcEEEEECCEEEEECHHHhEeeccC
Confidence                                                  1234568999997 7899999999999999999999998654


Q ss_pred             CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          339 GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       339 ~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .+...|+++|++.+.+   .+.||||++|||++|+|||++++|||||+++
T Consensus       328 ~g~~~C~~~~~~~~~~---~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~  374 (375)
T 1miq_A          328 VDDTLCMITMLPVDID---SNTFILGDPFMRKYFTVFDYDKESVGFAIAK  374 (375)
T ss_dssp             SSCSEEEESEEECCSS---SSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             CCCCeEEEEEEECCCC---CCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence            3346899999876532   2689999999999999999999999999975

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=100.00  E-value=1e-42  Score=341.00  Aligned_cols=250  Identities=24%  Similarity=0.337  Sum_probs=214.2

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc---CCCCchhhhhhhcC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~---~~~~~~~~~L~~qg   98 (388)
                      .|+|+.+. +.|.++.|+|+++   ++++++|.||+++.+.+..+....+|||||||++.++.   ...++++++|++| 
T Consensus        71 ~i~Yg~Gs~~~G~~~~D~v~ig---~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~-  146 (325)
T 1ibq_A           71 DISYGDGSSASGDVYRDTVTVG---GVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQ-  146 (325)
T ss_dssp             EEECSSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG-
T ss_pred             EEEeCCCCEEEEEEEEeEEEEC---CEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHh-
Confidence            68888875 8999999999999   89999999999998765434345789999999998775   3578899999987 


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                       +++++||+||.++    ..|+|+|||+|++++.|++.|+|+. +.+||.|.+++|+++++.+.  ..+..+++||||++
T Consensus       147 -i~~~~FS~~l~~~----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~  219 (325)
T 1ibq_A          147 -LDSPLFAVQLKHD----APGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSS--SSGFSAIADTGTTL  219 (325)
T ss_dssp             -SSSSEEEEEEETT----EEEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCCB--SCCEEEEECTTCCS
T ss_pred             -cCCcEEEEEecCC----CCceEEECCcChhhccCceEEEEcCCCCceEEEEECcEEECCeecc--CCCceEEEeCCCCc
Confidence             8899999999975    3899999999999999999999997 67899999999999998753  56788999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|++++++|.+++.+..                                                             
T Consensus       220 ~~lP~~~~~~i~~~i~~a~-------------------------------------------------------------  238 (325)
T 1ibq_A          220 ILLDDEIVSAYYEQVSGAQ-------------------------------------------------------------  238 (325)
T ss_dssp             EEECHHHHHHHHTTSTTCB-------------------------------------------------------------
T ss_pred             EeCCHHHHHHHHHhCCCce-------------------------------------------------------------
Confidence            9999999999999885430                                                             


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                            .+...+.|.++|+.  ++|+|+|+|+|+.++|++++|+++..
T Consensus       239 --------------------------------------~~~~~g~~~~~C~~--~~P~i~f~fgg~~~~i~~~~~~~~~~  278 (325)
T 1ibq_A          239 --------------------------------------ESYEAGGYVFSCST--DLPDFTVVIGDYKAVVPGKYINYAPV  278 (325)
T ss_dssp             --------------------------------------CCSSSSSCEEETTC--CCCCEEEEETTEEEEECHHHHEEEES
T ss_pred             --------------------------------------EcCcCCeEEEEcCC--CCCcEEEEECCEEEEECHHHhccccc
Confidence                                                  01224568899984  79999999999999999999998754


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      +.+...|++.|+..+    .++.||||++|||++|+|||++++|||||++|
T Consensus       279 ~~~~~~C~~~i~~~~----~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  325 (325)
T 1ibq_A          279 STGSSTCYGGIQSNS----GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA  325 (325)
T ss_dssp             STTCSEEEESEEECT----TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             CCCCCeEEEEEEcCC----CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence            323468999888642    34689999999999999999999999999986

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=100.00  E-value=1e-42  Score=357.31  Aligned_cols=249  Identities=24%  Similarity=0.437  Sum_probs=222.0

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEe----eCCccccccCccEEEeeccCccccCCCCchhhhhhhcC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATR----EGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~----~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg   98 (388)
                      .|.|+.+.+.|.++.|+|+++   +++++ |.||+++.    +++  |.....|||||||++.++..+.+|++++|++||
T Consensus       197 ~i~YgdGs~~G~~~~Dtv~ig---g~~v~-~~Fg~a~~t~~~~~~--f~~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg  270 (451)
T 3qvc_A          197 KLTSKAGTISGIFSKDLVTIG---KLSVP-YKFIEMTEIVGFEPF--YSESDVDGVFGLGWKDLSIGSIDPYIVELKTQN  270 (451)
T ss_dssp             EEECSSEEEEEEEEEEEEEET---TEEEE-EEEEEEEEEEECTTH--HHHSCCCEEEECSSBCSSSSCCCCHHHHHHHTT
T ss_pred             EEEECCCEEEEEEEEEEEEEC---CEEEE-EEEEEEEeccccCCC--ccCCCCCEEEecCCCcccccCCCCHHHHHHHcC
Confidence            688898999999999999999   89999 99999998    654  666678999999999998877889999999999


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCc
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLL  178 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i  178 (388)
                      +|++++||+||++..  ...|+|+|||+|++++.|+++|+|+.+.+||.+.++ |+++++    +..+..+++||||+++
T Consensus       271 ~I~~~~FS~~L~~~~--~~~G~l~fGgiD~s~y~G~l~~~pv~~~~~w~v~l~-I~Vgg~----~~~~~~aiiDSGTt~i  343 (451)
T 3qvc_A          271 KIEQAVYSIYLPPEN--KNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLD-VHFGNV----SSKKANVILDSATSVI  343 (451)
T ss_dssp             SSSSSEEEEECCTTC--TTEEEEEESSCCGGGEEEEEEEEECSSTTSSEEEEE-EEETTE----EEEEEEEEECTTBSSE
T ss_pred             CCCCCEEEEEEcCCC--CCCCEEEECCcchhhcCCceEEEEcccCCeeEEEEE-EEECCc----cCCCceEEEeCCCccc
Confidence            999999999999873  248999999999999999999999999999999999 999998    3456789999999999


Q ss_pred             ccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCC
Q 016530          179 AGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD  258 (388)
Q Consensus       179 ~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  258 (388)
                      ++|++++++|.+++++..                                                              
T Consensus       344 ~lP~~~~~~i~~~i~a~~--------------------------------------------------------------  361 (451)
T 3qvc_A          344 TVPTEFFNQFVESASVFK--------------------------------------------------------------  361 (451)
T ss_dssp             EECHHHHHHHHTTTTCEE--------------------------------------------------------------
T ss_pred             cCCHHHHHHHHHHcCCee--------------------------------------------------------------
Confidence            999999999999996541                                                              


Q ss_pred             CcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeecc
Q 016530          259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE  338 (388)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~  338 (388)
                                                            ....+.|.+||+ ..++|+|+|+|+|..++|+|++|+.+..+
T Consensus       362 --------------------------------------~~~~g~y~v~C~-~~~~P~itf~fgg~~i~lp~~~yi~~~~~  402 (451)
T 3qvc_A          362 --------------------------------------VPFLSLYVTTCG-NTKLPTLEYRSPNKVYTLEPKQYLEPLEN  402 (451)
T ss_dssp             --------------------------------------CTTSSCEEEETT-CTTCCCEEEEETTEEEEECHHHHEEECTT
T ss_pred             --------------------------------------cCCCCeEEeeCC-cCcCCcEEEEECCEEEEEcHHHheeeccc
Confidence                                                  122467999999 77899999999999999999999998765


Q ss_pred             CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          339 GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       339 ~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .....|++.|++.+.+   ++.||||++|||++|+|||++++|||||+++
T Consensus       403 ~~~~~C~~~i~~~~~~---~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak  449 (451)
T 3qvc_A          403 IFSALCMLNIVPIDLE---KNTFVLGDPFMRKYFTVYDYDNHTVGFALAK  449 (451)
T ss_dssp             TSTTEEEECEEECCCS---TTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             CCCCeEEEEEEeCCCC---CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence            4567899999876421   4789999999999999999999999999985

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=100.00  E-value=1.6e-42  Score=339.71  Aligned_cols=247  Identities=25%  Similarity=0.329  Sum_probs=212.3

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc---CCCCchhhhhhhcC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~---~~~~~~~~~L~~qg   98 (388)
                      .|+|+.+. +.|.++.|+|+++   ++++++|.||+++.+.+..+....+|||||||++.++.   ...++++++|++| 
T Consensus        72 ~i~Yg~Gs~~~G~~~~D~v~ig---~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~-  147 (323)
T 1izd_A           72 SISYGDGSSASGDVYKDKVTVG---GVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSS-  147 (323)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG-
T ss_pred             EEEcCCCCeEEEEEEEEEEEEC---CEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHh-
Confidence            57777775 8999999999999   89999999999998766434345789999999998875   3578899999988 


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                       +++++||+||.++    ..|+|+|||+|++++.|++.|+|+. +.+||.|.+++|++++ .+  +..+..+++||||++
T Consensus       148 -i~~~~FS~~L~~~----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~--~~~~~~aiiDSGTs~  219 (323)
T 1izd_A          148 -LSEPIFAVALKHN----APGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DS--SSDSITGIADTGTTL  219 (323)
T ss_dssp             -SSSSEEEEECCTT----SCEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EE--ECCCEEEEECTTCCS
T ss_pred             -ccCcEEEEEccCC----CCCEEEECCcCccccccceEEEECCCCCceEEEEECeEEECC-cc--cCCCceEEEeCCCcc
Confidence             8899999999875    3899999999999999999999996 6789999999999999 44  467789999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|++++++|.+++.+..            |                                                
T Consensus       220 ~~lp~~~~~~i~~~i~ga~------------~------------------------------------------------  239 (323)
T 1izd_A          220 LLLDDSIVDAYYEQVNGAS------------Y------------------------------------------------  239 (323)
T ss_dssp             EEECHHHHHHHHTTSTTCE------------E------------------------------------------------
T ss_pred             eeCCHHHHHHHHHhCCCcE------------E------------------------------------------------
Confidence            9999999999999885431            0                                                


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                             +...+.|.++|+.  .+|+|+|+|+|+.++|++++|+++..
T Consensus       240 ---------------------------------------~~~~g~~~~~C~~--~~P~i~f~fgg~~~~i~~~~~~~~~~  278 (323)
T 1izd_A          240 ---------------------------------------DSSQGGYVFPSSA--SLPDFSVTIGDYTATVPGEYISFADV  278 (323)
T ss_dssp             ---------------------------------------ETTTTEEEEETTC--CCCCEEEEETTEEEEECHHHHEEEEC
T ss_pred             ---------------------------------------cCcCCEEEEECCC--CCceEEEEECCEEEecCHHHeEEecC
Confidence                                                   1224568899984  79999999999999999999998753


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                        ....|++.|+..+    .++.||||++|||++|+|||++++|||||++|
T Consensus       279 --~~~~C~~~i~~~~----~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a  323 (323)
T 1izd_A          279 --GNGQTFGGIQSNS----GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA  323 (323)
T ss_dssp             --STTEEEESEEECT----TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             --CCCeEEEEEEcCC----CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence              2468999898653    34689999999999999999999999999986

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=100.00  E-value=5.9e-43  Score=346.76  Aligned_cols=253  Identities=22%  Similarity=0.350  Sum_probs=219.8

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCC-----ccccccCccEEEeeccCccccCC------CCchh
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGS-----LTFLLARFDGIIGLGFREIAVGD------AVPVW   91 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~-----~~f~~~~~dGIlGLg~~~~s~~~------~~~~~   91 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+     ..|.....|||||||++.++...      .++++
T Consensus        79 ~i~Yg~Gs~~G~~~~D~v~~g---~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~  155 (361)
T 1mpp_A           79 NITYGTGGANGIYFRDSITVG---GATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVH  155 (361)
T ss_dssp             EEECSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHH
T ss_pred             EEEECCceEEEEEEEEEEEEC---CEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccccccccccCCCHH
Confidence            678888888999999999999   89999999999998766     45666778999999999887544      78899


Q ss_pred             hhhhhcCCCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccc----eeEEEEccEEEcCeeeceecCCc
Q 016530           92 DNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKG----YWQFELGDILIGNQSTGVCEGGC  167 (388)
Q Consensus        92 ~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~----~w~v~l~~i~vgg~~~~~~~~~~  167 (388)
                      ++|++||+|++++||+||.+.   ...|.|+|||+|++++.|++.|+|+.+..    ||.|.+++|+++++.+. +..+.
T Consensus       156 ~~l~~~g~i~~~~FS~~l~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~-~~~~~  231 (361)
T 1mpp_A          156 VNLYKQGLISSPVFSVYMNTN---DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAV-SFDGA  231 (361)
T ss_dssp             HHHHHTTSSSSSEEEEECCCS---SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEE-EEEEE
T ss_pred             HHHHHcCCCCCcEEEEEecCC---CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEEECCeeec-cCCCC
Confidence            999999999999999999986   24899999999999999999999998765    99999999999998764 33567


Q ss_pred             eEE-EcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccce
Q 016530          168 AAI-VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIK  246 (388)
Q Consensus       168 ~ai-vDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~  246 (388)
                      .++ |||||+++++|++++++|.+++++..                                                  
T Consensus       232 ~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~--------------------------------------------------  261 (361)
T 1mpp_A          232 QAFTIDTGTNFFIAPSSFAEKVVKAALPDA--------------------------------------------------  261 (361)
T ss_dssp             EEEEEETTCCSEEEEHHHHHHHHHHHCTTC--------------------------------------------------
T ss_pred             EEEEECCCCCceeCCHHHHHHHHHHhCCcc--------------------------------------------------
Confidence            899 99999999999999999999996530                                                  


Q ss_pred             eeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCC-CcEEEEE--C--
Q 016530          247 TVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTM-PNVSFTI--G--  321 (388)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~l-P~i~f~~--g--  321 (388)
                                                                        +...+.|.++|..+.++ |+|+|+|  +  
T Consensus       262 --------------------------------------------------~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~  291 (361)
T 1mpp_A          262 --------------------------------------------------TESQQGYTVPCSKYQDSKTTFSLVLQKSGS  291 (361)
T ss_dssp             --------------------------------------------------EEETTEEEEEHHHHTTCCCEEEEEEECTTC
T ss_pred             --------------------------------------------------cCCCCcEEEECCCcccCCCcEEEEEEcCCc
Confidence                                                              11245688999877788 9999999  8  


Q ss_pred             ---CEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          322 ---DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       322 ---g~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                         |..++|+|++|+++... ....|+++|+..     .++.||||++|||++|+|||++++|||||+++
T Consensus       292 ~~~g~~~~i~~~~y~~~~~~-~~~~C~~~i~~~-----~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~  355 (361)
T 1mpp_A          292 SSDTIDVSVPISKMLLPVDK-SGETCMFIVLPD-----GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA  355 (361)
T ss_dssp             SSCEEEEEEEGGGGEEECSS-SSCEEEESEEEE-----SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             CCCCeEEEECHHHhEEecCC-CCCeeEEEEEeC-----CCCCEEEChHHhccEEEEEECCCCEEEEEEcc
Confidence               89999999999998643 245899999864     23679999999999999999999999999975

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=100.00  E-value=1.4e-42  Score=339.83  Aligned_cols=247  Identities=22%  Similarity=0.329  Sum_probs=211.4

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC---CCCchhhhhhhcC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG---DAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~---~~~~~~~~L~~qg   98 (388)
                      .|+|+.+. +.|.++.|+|+++   ++++++|.||+++.+++..+.....|||||||++.++..   ..++++++|++| 
T Consensus        72 ~i~Yg~Gs~~~G~~~~D~v~ig---~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~-  147 (323)
T 1bxo_A           72 SISYGDGSSASGNVFTDSVTVG---GVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSS-  147 (323)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGG-
T ss_pred             EEEeCCCCeEEEEEEEEEEEEC---CEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHh-
Confidence            67888775 8999999999999   899999999999987654343457899999999987752   567899999987 


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                       |++++||+||.++    ..|+|+|||+|+++++|++.|+|+. +.+||.|.+++|++++ .   +..+..+++||||++
T Consensus       148 -i~~~~FS~~L~~~----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~---~~~~~~aiiDSGTs~  218 (323)
T 1bxo_A          148 -LAQPLFAVALKHQ----QPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS-Q---SGDGFSGIADTGTTL  218 (323)
T ss_dssp             -BSSSEEEEECCSS----SCEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT-E---EEEEEEEEECTTCSS
T ss_pred             -cCCcEEEEEEeCC----CCceEEEeCcChhhccCceEEEECCCCCCeEEEEEeeEEECC-c---cCCCceEEEeCCCCc
Confidence             8999999999874    3899999999999999999999996 6789999999999999 2   345678999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|++++++|.+++++..            |                                                
T Consensus       219 ~~lP~~~~~~l~~~i~~a~------------~------------------------------------------------  238 (323)
T 1bxo_A          219 LLLDDSVVSQYYSQVSGAQ------------Q------------------------------------------------  238 (323)
T ss_dssp             EEECHHHHHHHHTTSTTCE------------E------------------------------------------------
T ss_pred             eeCCHHHHHHHHHhCCCce------------E------------------------------------------------
Confidence            9999999999999985431            0                                                


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                             +...+.|.++|+.  ++|+|+|+|+|..++|++++|+++..
T Consensus       239 ---------------------------------------~~~~g~~~~~C~~--~~P~i~f~fgg~~~~l~~~~~~~~~~  277 (323)
T 1bxo_A          239 ---------------------------------------DSNAGGYVFDCST--NLPDFSVSISGYTATVPGSLINYGPS  277 (323)
T ss_dssp             ---------------------------------------ETTTTEEEECTTC--CCCCEEEEETTEEEEECHHHHEEEEC
T ss_pred             ---------------------------------------cCcCCEEEEECCC--CCceEEEEECCEEEEECHHHeEEecc
Confidence                                                   1234568899994  79999999999999999999998754


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      . ....|++.|+..+    .++.||||++|||++|+|||++++|||||++|
T Consensus       278 ~-~~~~C~~~i~~~~----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a  323 (323)
T 1bxo_A          278 G-DGSTCLGGIQSNS----GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA  323 (323)
T ss_dssp             S-SSSCEEESEEECT----TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             C-CCCeEEEEEECCC----CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence            2 3468999998653    34689999999999999999999999999986

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=100.00  E-value=2.4e-42  Score=339.75  Aligned_cols=255  Identities=24%  Similarity=0.350  Sum_probs=216.1

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc--------CCCCchhhhh
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV--------GDAVPVWDNM   94 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~--------~~~~~~~~~L   94 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+  |  ..+|||||||++.++.        ...++++++|
T Consensus        60 ~i~Yg~Gs~~G~~~~Dtv~~g---~~~v~~~~fg~~~~~~~--~--~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~~l  132 (340)
T 1wkr_A           60 SVTYGSGSFSGTEYTDTVTLG---SLTIPKQSIGVASRDSG--F--DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNL  132 (340)
T ss_dssp             EEECSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEEES--C--TTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHH
T ss_pred             EEEECCcEEEEEEEEEEEEEC---CEEEcceEEEEEEccCC--C--cCCCcEEECCccccccccccccccccCCCHHHHH
Confidence            678888889999999999999   89999999999998754  3  2579999999998775        3567899999


Q ss_pred             hhcCCCCcceEEEEecCCC-CCCCCcEEEECCCCCCceecceeEeeecc----cceeEEEEccEEEcC-eeeceecCCce
Q 016530           95 VEQGLVSEEVFSFWLNRDP-DAEEGGEIVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGN-QSTGVCEGGCA  168 (388)
Q Consensus        95 ~~qg~i~~~~FSl~L~~~~-~~~~~G~L~fGgid~~~~~g~l~~~pv~~----~~~w~v~l~~i~vgg-~~~~~~~~~~~  168 (388)
                      ++||+|++++||+||.+.. +....|.|+|||+|++++.|++.|+|+.+    .+||.+. .+|++++ +.+.   .+..
T Consensus       133 ~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~---~~~~  208 (340)
T 1wkr_A          133 FSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSIL---SSTA  208 (340)
T ss_dssp             HHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEE---EEEE
T ss_pred             HHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEECCCeEcc---CCCe
Confidence            9999999999999998742 12347999999999999999999999987    7899999 9999998 7663   3457


Q ss_pred             EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016530          169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV  248 (388)
Q Consensus       169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~  248 (388)
                      +++||||+++++|++++++|.+++++..                                                    
T Consensus       209 aiiDSGTt~~~lP~~~~~~l~~~~~a~~----------------------------------------------------  236 (340)
T 1wkr_A          209 GIVDTGTTLTLIASDAFAKYKKATGAVA----------------------------------------------------  236 (340)
T ss_dssp             EEECTTBCSEEECHHHHHHHHHHHTCEE----------------------------------------------------
T ss_pred             EEEeCCcccccCCHHHHHHHHHhhCCEE----------------------------------------------------
Confidence            9999999999999999999988886530                                                    


Q ss_pred             eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeC
Q 016530          249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLS  328 (388)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~  328 (388)
                                                                      ....+.|.+||+...++|+|+|.|+|..++|+
T Consensus       237 ------------------------------------------------~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~  268 (340)
T 1wkr_A          237 ------------------------------------------------DNNTGLLRLTTAQYANLQSLFFTIGGQTFELT  268 (340)
T ss_dssp             ------------------------------------------------CTTTSSEEECHHHHHTCCCEEEEETTEEEEEC
T ss_pred             ------------------------------------------------cCCCCeEEeeccccccCCcEEEEECCEEEEEc
Confidence                                                            12345688999866689999999999999999


Q ss_pred             cccceeeecc-----CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          329 PEQYILKTGE-----GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       329 p~~yi~~~~~-----~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      |++|+++...     +....|++.|...+.+...++.||||++|||++|+|||++++|||||+++
T Consensus       269 ~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  333 (340)
T 1wkr_A          269 ANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTS  333 (340)
T ss_dssp             TGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECT
T ss_pred             HHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecC
Confidence            9999987542     12467999898765433345679999999999999999999999999974

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=100.00  E-value=3.8e-42  Score=353.42  Aligned_cols=250  Identities=27%  Similarity=0.496  Sum_probs=219.9

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeC--CccccccCccEEEeeccCccccCCCCchhhhhhhcCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREG--SLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~--~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i  100 (388)
                      .|+|+.+.++|.++.|+|+++   +++++ |.||+++.++  +..|.....|||||||+++++....+|++++|++||+|
T Consensus       198 ~i~YgdGs~~G~~~~Dtv~ig---~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i  273 (453)
T 2bju_A          198 EMNYVSGTVSGFFSKDLVTVG---NLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKI  273 (453)
T ss_dssp             EEECSSSEEEEEEEEEEEEET---TEEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSS
T ss_pred             EEEcCCCCeEEEEEEEEEEEe---CcEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcHHHHHHHCCCC
Confidence            688888889999999999999   89999 9999999976  55566677899999999999887888999999999999


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++++||+||++.+  ...|.|+|||+|++++.|++.|+|+.+.+||.|.++ |++++. +  + .+..+++||||+++++
T Consensus       274 ~~~~FS~~L~~~~--~~~G~l~fGg~D~~~y~G~l~~~pv~~~~~w~V~l~-I~Vgg~-~--~-~~~~aIiDSGTsl~~l  346 (453)
T 2bju_A          274 ENALFTFYLPVHD--KHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLD-AHVGNI-M--L-EKANCIVDSGTSAITV  346 (453)
T ss_dssp             SSCEEEEECCBTT--TBCEEEEESSCCGGGEEEEEEEEEEEEETTEEEEEE-EEETTE-E--E-EEEEEEECTTCCSEEE
T ss_pred             CCCEEEEEeCCCC--CCCeEEEECCCCHHHcCCceEEEecCCCceEEEEEE-EEECcE-E--e-ccccEEEcCCCCeEec
Confidence            9999999999873  358999999999999999999999999999999999 999993 3  3 5678999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |++++++|.+++++.                                                                 
T Consensus       347 P~~~~~~l~~~i~~~-----------------------------------------------------------------  361 (453)
T 2bju_A          347 PTDFLNKMLQNLDVI-----------------------------------------------------------------  361 (453)
T ss_dssp             CHHHHHHHTTTSSCE-----------------------------------------------------------------
T ss_pred             CHHHHHHHHHHhCCc-----------------------------------------------------------------
Confidence            999999998888543                                                                 


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCC-ceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccC
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMG-ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEG  339 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~-~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~  339 (388)
                                                          +...| .|.++|+. ..+|+|+|+|+|..++|+|++|+++....
T Consensus       362 ------------------------------------~~~~g~~~~v~C~~-~~~P~itf~fgg~~~~l~~~~yi~~~~~~  404 (453)
T 2bju_A          362 ------------------------------------KVPFLPFYVTLCNN-SKLPTFEFTSENGKYTLEPEYYLQHIEDV  404 (453)
T ss_dssp             ------------------------------------ECTTSSCEEEETTC-TTCCCEEEECSSCEEEECHHHHEEECTTT
T ss_pred             ------------------------------------ccCCCceEEEecCC-CCCCcEEEEECCEEEEECHHHhEeecccC
Confidence                                                11234 68899997 78999999999999999999999986543


Q ss_pred             cccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          340 IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       340 ~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      +...|+++|++.+.+   .+.||||++|||++|+|||++++|||||+++
T Consensus       405 g~~~C~~~~~~~~~~---~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~  450 (453)
T 2bju_A          405 GPGLCMLNIIGLDFP---VPTFILGDPFMRKYFTVFDYDNHSVGIALAK  450 (453)
T ss_dssp             STTEEEECEEECCCS---SCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEEEeCCCC---CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence            456899999876532   3589999999999999999999999999975

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=100.00  E-value=1.4e-41  Score=333.60  Aligned_cols=249  Identities=24%  Similarity=0.321  Sum_probs=212.2

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc---CCCCchhhhhhhcC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~---~~~~~~~~~L~~qg   98 (388)
                      .|+|+.+. +.|.++.|+|+++   ++++++|.||+++.+.+..+.....|||||||++.++.   ...++++++|++| 
T Consensus        76 ~i~Yg~Gs~~~G~~~~D~v~ig---~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~-  151 (329)
T 3c9x_A           76 SISYGDGSSSSGDVYTDKVTIG---GFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASS-  151 (329)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTT-
T ss_pred             EEEeCCCCcEEEEEEEEEEEEC---CEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHh-
Confidence            67888775 8999999999999   89999999999998765433335789999999998775   2467899999987 


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                       |++++||+||.++    ..|.|+|||+|++++.|++.|+|+. +.+||.|.+++|+++++.+.  ..+..+++||||++
T Consensus       152 -i~~~~FS~~l~~~----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~  224 (329)
T 3c9x_A          152 -LAEPLFTADLRHG----QNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLN--RNSIDGIADTGTTL  224 (329)
T ss_dssp             -SSSSEEEEECCSS----SCEEEEESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCCC--SCCEEEEECTTCCS
T ss_pred             -cCCCEEEEEecCC----CCcEEEEeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEecc--CCCceEEEECCCCc
Confidence             8899999999874    3899999999999999999999997 57899999999999998763  56788999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|++++++|.+++.+..            |                                                
T Consensus       225 ~~lp~~~~~~i~~~i~~a~------------~------------------------------------------------  244 (329)
T 3c9x_A          225 LLLDDNVVDAYYANVQSAQ------------Y------------------------------------------------  244 (329)
T ss_dssp             EEECHHHHHHHHTTCTTCE------------E------------------------------------------------
T ss_pred             EeCCHHHHHHHHHhCCCcE------------E------------------------------------------------
Confidence            9999999999999885431            0                                                


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                             +...+.|.++|.  ..+|+|+|+|+|..++|++++|+++..
T Consensus       245 ---------------------------------------~~~~~~~~~~C~--~~~P~i~f~f~g~~~~ip~~~~~~~~~  283 (329)
T 3c9x_A          245 ---------------------------------------DNQQEGVVFDCD--EDLPSFSFGVGSSTITIPGDLLNLTPL  283 (329)
T ss_dssp             ---------------------------------------ETTTTEEEEETT--CCCCCEEEEETTEEEEECGGGGEEEES
T ss_pred             ---------------------------------------cCCCCEEEEECC--CCCCcEEEEECCEEEEECHHHeeeecc
Confidence                                                   112456889998  379999999999999999999998754


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEec
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA  387 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~  387 (388)
                      +.....|++.|+..+    ..+.||||++|||++|+|||++++|||||+.
T Consensus       284 ~~~~~~C~~~i~~~~----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~  329 (329)
T 3c9x_A          284 EEGSSTCFGGLQSSS----GIGINIFGDVALKAALVVFDLGNERLGWAQK  329 (329)
T ss_dssp             STTCSEEEESEEECT----TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCCeEEEEEEcCC----CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence            333468999888642    3468999999999999999999999999984

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=100.00  E-value=1.1e-41  Score=334.35  Aligned_cols=249  Identities=21%  Similarity=0.304  Sum_probs=211.7

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc---CCCCchhhhhhhcC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV---GDAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~---~~~~~~~~~L~~qg   98 (388)
                      .|+|+.+. +.|.++.|+|+++   ++++++|.||+++.+.+..+.....|||||||++.++.   ...++++++|++| 
T Consensus        75 ~i~Yg~Gs~~~G~~~~D~v~~g---~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~-  150 (329)
T 1oew_A           75 SISYGDGSSSSGDVYTDTVSVG---GLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKAS-  150 (329)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTT-
T ss_pred             EEEeCCCCcEEEEEEEEEEEEC---CEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHh-
Confidence            67787775 8999999999999   89999999999998765433335789999999998775   2467899999987 


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                       |++++||+||.+.    ..|+|+|||+|++++.|++.|+|+. +.+||.|.+++|+++++.+.  ..+..+++||||++
T Consensus       151 -i~~~~FS~~L~~~----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~  223 (329)
T 1oew_A          151 -LDSPVFTADLGYH----APGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFK--STSIDGIADTGTTL  223 (329)
T ss_dssp             -SSSSEEEEECCSS----SCEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCE--EEEEEEEECTTCCS
T ss_pred             -ccCcEEEEEccCC----CCeEEEEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeecc--CCCceEEEeCCCCC
Confidence             8899999999874    3899999999999999999999997 67899999999999998653  45678999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|++++++|.+++.+..            |                                                
T Consensus       224 ~~lP~~~~~~l~~~i~~a~------------~------------------------------------------------  243 (329)
T 1oew_A          224 LYLPATVVSAYWAQVSGAK------------S------------------------------------------------  243 (329)
T ss_dssp             EEECHHHHHHHHTTSTTCE------------E------------------------------------------------
T ss_pred             EECCHHHHHHHHHhCCCcE------------E------------------------------------------------
Confidence            9999999999999885431            0                                                


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                             +...+.|.++|..  .+|+|+|+|+|..++|++++|+++..
T Consensus       244 ---------------------------------------~~~~g~~~~~C~~--~~P~i~f~fgg~~~~ip~~~~~~~~~  282 (329)
T 1oew_A          244 ---------------------------------------SSSVGGYVFPCSA--TLPSFTFGVGSARIVIPGDYIDFGPI  282 (329)
T ss_dssp             ---------------------------------------ETTTTEEEEETTC--CCCCEEEEETTEEEEECHHHHEEEES
T ss_pred             ---------------------------------------cCCCCEEEEECCC--CCCcEEEEECCEEEEECHHHeeeeec
Confidence                                                   1224568899983  79999999999999999999998754


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeC-CCCeEEEEec
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDS-GKLRIGFAEA  387 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~-~~~rIGfA~~  387 (388)
                      ......|++.|+..+    ..+.||||++|||++|+|||+ +++|||||+.
T Consensus       283 ~~~~~~C~~~i~~~~----~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~  329 (329)
T 1oew_A          283 STGSSSCFGGIQSSA----GIGINIFGDVALKAAFVVFNGATTPTLGFASK  329 (329)
T ss_dssp             STTCSEEEESEEEST----TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred             CCCCCeEEEEEEeCC----CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence            333468999888643    346899999999999999999 9999999984

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=100.00  E-value=2.7e-41  Score=330.93  Aligned_cols=248  Identities=29%  Similarity=0.479  Sum_probs=212.4

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc-CCCCchhhhhhhcCCC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV-GDAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~-~~~~~~~~~L~~qg~i  100 (388)
                      .|+|+.+ .+.|.++.|+|+++   ++++++|.||+++.+.+. |.....|||||||++.++. ...++++++|++||+|
T Consensus        74 ~i~Yg~Gs~~~G~~~~D~v~~g---~~~v~~~~fg~~~~~~~~-f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i  149 (325)
T 2apr_A           74 SISYGDGSSASGILAKDNVNLG---GLLIKGQTIELAKREAAS-FASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLI  149 (325)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHH-HHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSC
T ss_pred             EEEECCCCCEEEEEEEEEEEEC---CEEECcEEEEEEeccCcc-cccCCCceEEEeCCcccccccCCCCHHHHHHhcCCC
Confidence            5778777 48999999999999   899999999999987653 6556689999999998874 3577899999999999


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcc
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLA  179 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~  179 (388)
                      ++++||+||.+... ...|.|+|||+|++++.|++.|+|+. +.+||.|.+++|++++ .+  +..+..+++||||++++
T Consensus       150 ~~~~FS~~l~~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~-~~--~~~~~~~iiDSGTs~~~  225 (325)
T 2apr_A          150 SRPIFGVYLGKAKN-GGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGT-ST--VASSFDGILDTGTTLLI  225 (325)
T ss_dssp             SSSEEEEEECCGGG-TCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETT-EE--EECCEEEEECTTCSSEE
T ss_pred             CCceEEEEecCCCC-CCCCEEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECC-Ee--cCCCceEEEecCCccEE
Confidence            99999999976421 25899999999999999999999996 5789999999999999 33  35678999999999999


Q ss_pred             cCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCC
Q 016530          180 GPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS  259 (388)
Q Consensus       180 lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (388)
                      +|+++++++.+++.+.-                                                               
T Consensus       226 lP~~~~~~~~~~~~~~~---------------------------------------------------------------  242 (325)
T 2apr_A          226 LPNNIAASVARAYGASD---------------------------------------------------------------  242 (325)
T ss_dssp             EEHHHHHHHHHHHTCEE---------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHhccc---------------------------------------------------------------
Confidence            99999999999985430                                                               


Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEG  339 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~  339 (388)
                                                           +. .+.|.++|+. ..+|+|+|+|+|..++|++++|+++..  
T Consensus       243 -------------------------------------~~-~g~~~~~C~~-~~~p~i~f~f~g~~~~ip~~~~~~~~~--  281 (325)
T 2apr_A          243 -------------------------------------NG-DGTYTISCDT-SAFKPLVFSINGASFQVSPDSLVFEEF--  281 (325)
T ss_dssp             -------------------------------------CS-SSCEEECSCG-GGCCCEEEEETTEEEEECGGGGEEEEE--
T ss_pred             -------------------------------------CC-CCeEEEECCC-CCCCcEEEEECCEEEEECHHHEEEcCC--
Confidence                                                 11 1558899985 348999999998899999999998654  


Q ss_pred             cccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          340 IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       340 ~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                       ...|++.|+..+     .+.||||++|||++|+|||++++|||||+++
T Consensus       282 -~~~C~~~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  324 (325)
T 2apr_A          282 -QGQCIAGFGYGN-----WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA  324 (325)
T ss_dssp             -TTEEEESEEEES-----SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             -CCeEEEEEEcCC-----CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence             468999988653     3679999999999999999999999999985

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=100.00  E-value=2.3e-40  Score=324.80  Aligned_cols=243  Identities=23%  Similarity=0.305  Sum_probs=210.1

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc----------CCCCchh
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV----------GDAVPVW   91 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~----------~~~~~~~   91 (388)
                      .|.|+.+ .+.|.++.|+|+++   ++++++|.||+++...+       .+||||||++.++.          ...++++
T Consensus        75 ~i~Yg~gs~~~G~~~~D~v~~g---~~~v~~~~fg~~~~~~~-------~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~  144 (339)
T 3fv3_A           75 TIRYGDGSTSQGTWGKDTVTIN---GVSITGQQIADVTQTSV-------DQGILGIGYTSNEAVYDTSGRQTTPNYDNVP  144 (339)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEESS-------SSCEEECSCGGGCCCBCTTSCBCSCCCCCHH
T ss_pred             EEEECCCceEEEEEEEEEEEEC---CEEECceEEEEEEecCC-------CceeEEecCccccccccccccccCccCCcHH
Confidence            6778888 89999999999999   89999999999998653       49999999998763          2356799


Q ss_pred             hhhhhcCCCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEE
Q 016530           92 DNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV  171 (388)
Q Consensus        92 ~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiv  171 (388)
                      ++|++||+|++++||+||.+...  ..|+|+|||+|++++.|+++|+|+....+|.|++++|.++++.+..   +..+++
T Consensus       145 ~~L~~~g~i~~~~fsl~l~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~---~~~~ii  219 (339)
T 3fv3_A          145 VTLKKQGKIRTNAYSLYLNSPSA--ETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALL  219 (339)
T ss_dssp             HHHHHTTSCSSSEEEEECCCTTC--SEEEEEETEEETTSBSSCCEEEEBCCSSSCEEEEEEEEESSCEEEE---EEEEEE
T ss_pred             HHHHHCCCCCCceEEEEECCCCC--CCeEEEEeeechHHeecceEEEecccCccEEEEEEEEEECCEeecC---CccEEE
Confidence            99999999999999999987642  4899999999999999999999999989999999999999998753   367999


Q ss_pred             cCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeec
Q 016530          172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK  251 (388)
Q Consensus       172 DSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~  251 (388)
                      ||||+++++|++++++|.+++++..             .                                         
T Consensus       220 DSGtt~~~lP~~~~~~i~~~~~~~~-------------~-----------------------------------------  245 (339)
T 3fv3_A          220 DSGTTLTYFPSDFAAQLADKAGARL-------------V-----------------------------------------  245 (339)
T ss_dssp             CTTBSSEEECHHHHHHHHHHHTCEE-------------E-----------------------------------------
T ss_pred             eCCCCCEecCHHHHHHHHHHcCCEE-------------c-----------------------------------------
Confidence            9999999999999999999997541             0                                         


Q ss_pred             ccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcc
Q 016530          252 ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPE  330 (388)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~  330 (388)
                                                                 ..+...+.|.++|+. ..+|+|+|+|+ |..++|+++
T Consensus       246 -------------------------------------------~~~~~~~~~~~~C~~-~~~p~i~f~f~~g~~~~v~~~  281 (339)
T 3fv3_A          246 -------------------------------------------QVARDQYLYFIDCNT-DTSGTTVFNFGNGAKITVPNT  281 (339)
T ss_dssp             -------------------------------------------EEETTEEEEEECTTC-CCCSEEEEEETTSCEEEEEGG
T ss_pred             -------------------------------------------cccccCceEEEecCC-CCCCcEEEEECCCCEEEECHH
Confidence                                                       000124568899996 56899999995 899999999


Q ss_pred             cceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          331 QYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       331 ~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      +|+++..   ...|++.|+.       .+.||||++|||++|+|||++++|||||+++
T Consensus       282 ~~~~~~~---~~~C~~~i~~-------~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~  329 (339)
T 3fv3_A          282 EYVYQNG---DGTCLWGIQP-------SDDTILGDNFLRHAYLLYNLDANTISIAQVK  329 (339)
T ss_dssp             GGEEECS---SSCEEESEEE-------CSSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             HheeeCC---CCeEEEEEEe-------CCcEEeChHHHhCEEEEEECCCCEEEEEecC
Confidence            9998753   3579999985       2569999999999999999999999999975

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=100.00  E-value=5e-40  Score=323.50  Aligned_cols=244  Identities=19%  Similarity=0.267  Sum_probs=207.1

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC--CCCchhhhhhhcCC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg~   99 (388)
                      .|+|+.+ .+.|.++.|+|+++   ++++++|.||+++...       ..+||||||++.++..  ...+++++|++||+
T Consensus        81 ~i~Yg~Gs~~~G~~~~D~v~~g---~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~  150 (342)
T 2qzx_A           81 DIKYGDGSYAKGKLYKDTVGIG---GVSVRDQLFANVWSTS-------ARKGILGIGFQSGEATEFDYDNLPISLRNQGI  150 (342)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEEC-------SSSCEEECSCGGGCSSSSCCCCHHHHHHHTTS
T ss_pred             EEEeCCCCeEEEEEEEEEEEEC---CEEecceEEEEEEecC-------CCcCEEEEccccccCCCccCccHHHHHHHCCC
Confidence            5777776 57899999999999   8999999999998753       4699999999987643  35688999999999


Q ss_pred             CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcc
Q 016530          100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLA  179 (388)
Q Consensus       100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~  179 (388)
                      |++++||+||.+..  ...|.|+|||+|++++.|++.|+|+.+..+|.|.+++|+++++.+.   .+..+++||||++++
T Consensus       151 i~~~~Fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~---~~~~aiiDSGTt~~~  225 (342)
T 2qzx_A          151 IGKAAYSLYLNSAE--ASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVD---ANTNVLLDSGTTISY  225 (342)
T ss_dssp             SSSSEEEEECCCTT--CSEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEE
T ss_pred             cCccEEEEEeCCCC--CCCeEEEECccchhhEecceEEEeccCCceEEEEEeEEEECCEecC---CCcCEEEeCCCCCEE
Confidence            99999999998753  2489999999999999999999999988999999999999998875   346799999999999


Q ss_pred             cCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCC
Q 016530          180 GPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS  259 (388)
Q Consensus       180 lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (388)
                      +|++++++|.+++++...           |                                                  
T Consensus       226 lP~~~~~~l~~~~~~~~~-----------~--------------------------------------------------  244 (342)
T 2qzx_A          226 FTRSIVRNILYAIGAQMK-----------F--------------------------------------------------  244 (342)
T ss_dssp             ECHHHHHHHHHHHTCEEE-----------E--------------------------------------------------
T ss_pred             cCHHHHHHHHHHhCCeee-----------e--------------------------------------------------
Confidence            999999999999976410           0                                                  


Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEE-CCEEEEeCcccceeeec-
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI-GDKIFNLSPEQYILKTG-  337 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~-gg~~~~l~p~~yi~~~~-  337 (388)
                                                          .+...+.|.++|+.   +|+|+|+| +|..++|++++|+++.. 
T Consensus       245 ------------------------------------~~~~~~~~~~~C~~---~p~i~f~f~~g~~~~i~~~~~~~~~~~  285 (342)
T 2qzx_A          245 ------------------------------------DSAGNKVYVADCKT---SGTIDFQFGNNLKISVPVSEFLFQTYY  285 (342)
T ss_dssp             ------------------------------------CTTSCEEEEECTTC---CCEEEEEETTTEEEEEEGGGGEECCBC
T ss_pred             ------------------------------------ccCCCcEEEEECCC---CCcEEEEECCCcEEEEcHHHhcccccc
Confidence                                                01112368899984   89999999 68999999999998743 


Q ss_pred             --cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          338 --EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       338 --~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                        ......|++.|+..       +.||||++|||++|+|||++++|||||+++
T Consensus       286 ~~~~~~~~C~~~i~~~-------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  331 (342)
T 2qzx_A          286 TSGKPFPKCEVRIRES-------EDNILGDNFLRSAYVVYNLDDKKISMAPVK  331 (342)
T ss_dssp             TTSCBCSSEEESEEEC-------SSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             cCCCCCCccEEEEecC-------CCcEeChHhhhcEEEEEECCCCEEEEEeeC
Confidence              12346799988753       359999999999999999999999999974

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=100.00  E-value=7.2e-40  Score=321.69  Aligned_cols=239  Identities=23%  Similarity=0.308  Sum_probs=206.1

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC--CCCchhhhhhhcCC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg~   99 (388)
                      .|+|+.+ .+.|.++.|+|+++   ++++++|.||+++...       ..|||||||++.++..  ..++++++|++||+
T Consensus        81 ~i~Yg~Gs~~~G~~~~D~v~~g---~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~  150 (334)
T 1j71_A           81 SIEYGDLTSSQGSFYKDTVGFG---GISIKNQQFADVTTTS-------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGI  150 (334)
T ss_dssp             EEEBTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEES-------SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTS
T ss_pred             EEEECCCCEEEEEEEEEEEEEC---CEEEccEEEEEEEecC-------CCccEEEEcCCcccCccccCCcHHHHHHHCCC
Confidence            5777776 57899999999999   8999999999998763       4699999999987642  45688999999999


Q ss_pred             CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcc
Q 016530          100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLA  179 (388)
Q Consensus       100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~  179 (388)
                      |++++||+||.+..  ...|.|+|||+|++++.|++.|+|+.+..+|.|.+++|+++++.+.   .+..+++||||++++
T Consensus       151 i~~~~Fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~---~~~~~iiDSGTt~~~  225 (334)
T 1j71_A          151 INKNAYSLYLNSED--ASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVS---TNADVVLDSGTTITY  225 (334)
T ss_dssp             CSSSEEEEECCCTT--CSEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEE
T ss_pred             CCccEEEEEeCCCC--CCCeEEEEeeechHHccCceEEEEccCCCeEEEEEeEEEECCEecc---CCccEEEeCCCCcEe
Confidence            99999999998753  2489999999999999999999999988999999999999998875   346799999999999


Q ss_pred             cCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCC
Q 016530          180 GPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS  259 (388)
Q Consensus       180 lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (388)
                      +|++++++|.+++++..                                                               
T Consensus       226 lP~~~~~~l~~~~~~~~---------------------------------------------------------------  242 (334)
T 1j71_A          226 FSQSTADKFARIVGATW---------------------------------------------------------------  242 (334)
T ss_dssp             ECHHHHHHHHHHHTCEE---------------------------------------------------------------
T ss_pred             cCHHHHHHHHHHcCCcc---------------------------------------------------------------
Confidence            99999999999997540                                                               


Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCcee-ecCCCCCCCCcEEEEE-CCEEEEeCcccceeeec
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESI-IDCDRIPTMPNVSFTI-GDKIFNLSPEQYILKTG  337 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~-v~C~~~~~lP~i~f~~-gg~~~~l~p~~yi~~~~  337 (388)
                                                           +...+.|. ++|+.   +|+|+|+| +|..++|+|++|+++..
T Consensus       243 -------------------------------------~~~~~~~~~~~C~~---~p~i~f~f~~g~~~~i~~~~y~~~~~  282 (334)
T 1j71_A          243 -------------------------------------DSRNEIYRLPSCDL---SGDAVFNFDQGVKITVPLSELILKDS  282 (334)
T ss_dssp             -------------------------------------ETTTTEEECSSSCC---CSEEEEEESTTCEEEEEGGGGEEECS
T ss_pred             -------------------------------------cCCCceEEEEcCCC---CCceEEEEcCCcEEEECHHHheeecC
Confidence                                                 01123577 89984   89999999 68999999999999864


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ++  ..|++.|+..       +.||||++|||++|+|||++++|||||+++
T Consensus       283 ~~--~~C~~~i~~~-------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~  324 (334)
T 1j71_A          283 DS--SICYFGISRN-------DANILGDNFLRRAYIVYDLDDKTISLAQVK  324 (334)
T ss_dssp             SS--SCEEESEEEC-------TTCEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CC--CeeEEEEeEC-------CCcEEChHhhccEEEEEECCCCEEEEEecC
Confidence            32  3599988753       359999999999999999999999999974

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=100.00  E-value=1e-39  Score=320.34  Aligned_cols=245  Identities=21%  Similarity=0.291  Sum_probs=206.1

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC-CCCchhhhhhhcCCC
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG-DAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~-~~~~~~~~L~~qg~i  100 (388)
                      .|.|+.+. +.|.++.|+|+++   ++++++|.||+++...       ..|||||||++.++.. ..++++++|++||+|
T Consensus        81 ~i~Yg~gs~~~G~~~~D~v~ig---~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i  150 (342)
T 3pvk_A           81 KIGYGDGSSSQGTLYKDTVGFG---GVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVI  150 (342)
T ss_dssp             EEECSSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSSCCHHHHHHHTTSS
T ss_pred             EEEecCCCeEEEEEEEEEEEEC---CEEecceEEEEEEccC-------CCccEEEecCccccccccCCcHHHHHHhcCCC
Confidence            57788774 8999999999999   8999999999998753       4699999999987643 356799999999999


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++++||+||++...  ..|.|+|||+|++++.|++.|+|+.+..+|.|.+++|.++++.+..  .+..+++||||+++++
T Consensus       151 ~~~~fs~~l~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~--~~~~~iiDSGtt~~~l  226 (342)
T 3pvk_A          151 AKNAYSLYLNSPDA--ATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--DNVDVLLDSGTTITYL  226 (342)
T ss_dssp             SSSEEEEECCCTTC--SEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEE--EEEEEEECTTCSSEEE
T ss_pred             CCceEEEEeCCCCC--CCcEEEECccCccceeeeeEEeecCccceEEEEEeEEEECCEEecC--CCceEEEeCCCCCeec
Confidence            99999999987532  4799999999999999999999999989999999999999998753  3478999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |++++++|.+++++...                                                               
T Consensus       227 P~~~~~~i~~~~~~~~~---------------------------------------------------------------  243 (342)
T 3pvk_A          227 QQDLADQIIKAFNGKLT---------------------------------------------------------------  243 (342)
T ss_dssp             CHHHHHHHHHHTTCEEE---------------------------------------------------------------
T ss_pred             CHHHHHHHHHHcCCeec---------------------------------------------------------------
Confidence            99999999999976510                                                               


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeeccC
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEG  339 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~~yi~~~~~~  339 (388)
                                                        ......+.|.++|+.   .|+|+|+|+ |..++|++++|+++....
T Consensus       244 ----------------------------------~~~~~~~~~~~~C~~---~p~i~f~f~~g~~~~vp~~~~~~~~~~~  286 (342)
T 3pvk_A          244 ----------------------------------QDSNGNSFYEVDCNL---SGDVVFNFSKNAKISVPASEFAASLQGD  286 (342)
T ss_dssp             ----------------------------------ECTTSCEEEEECSCC---CSEEEEEESTTCEEEEEGGGGEEC----
T ss_pred             ----------------------------------ccCCCceEEEEecCC---CCceEEEECCCCEEEEcHHHheeecccc
Confidence                                              000112348899995   599999997 899999999999974321


Q ss_pred             c---ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          340 I---AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       340 ~---~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .   ...|++.|...       +.||||++|||++|+|||++++|||||+++
T Consensus       287 ~g~~~~~C~~~i~~~-------~~~ilG~~fl~~~y~vfD~~~~~igfA~~~  331 (342)
T 3pvk_A          287 DGQPYDKCQLLFDVN-------DANILGDNFLRSAYIVYDLDDNEISLAQVK  331 (342)
T ss_dssp             ------CEEESEEEC-------TTCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             CCCcCCeeEEEEeeC-------CCeEeCHHHHhcEEEEEECCCCEEEEEecC
Confidence            1   36799998752       578999999999999999999999999975

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=310.64  Aligned_cols=262  Identities=24%  Similarity=0.394  Sum_probs=200.9

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEee-CcEEEEEEeeCCccccccCccEEEeeccCcccc--CCCCchhhhhhhcCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFL-LQVFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~-~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~--~~~~~~~~~L~~qg~   99 (388)
                      .|+|+.+.+.|.++.|+|+++.  +..+. .+.|+++....+.......+|||||||++.++.  ...++++++|++|+.
T Consensus        69 ~i~Yg~Gs~~G~~~~Dtv~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~  146 (383)
T 2ewy_A           69 TVKYTQGSWTGFVGEDLVTIPK--GFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQAN  146 (383)
T ss_dssp             EEECSSCEEEEEEEEEEEEETT--TEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHT
T ss_pred             EEEECCcEEEEEEEEEEEEECC--CccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccC
Confidence            5888888889999999999972  22222 356777765443322234679999999998875  457889999999999


Q ss_pred             CCcceEEEEecCC-----CCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecC---CceEEE
Q 016530          100 VSEEVFSFWLNRD-----PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEG---GCAAIV  171 (388)
Q Consensus       100 i~~~~FSl~L~~~-----~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~---~~~aiv  171 (388)
                      + +++||+||++.     ......|.|+|||+|++++.|++.|+|+.+..||.|.+++|+|+++.+.+...   ...+++
T Consensus       147 i-~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aii  225 (383)
T 2ewy_A          147 I-PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIV  225 (383)
T ss_dssp             C-CSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSSBTTBBCCEEEEEETTEECCCCTTTTTSSCEEE
T ss_pred             C-CcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCCCceEEEEEEEEEECCEEccccccccCCccEEE
Confidence            9 79999999752     12235899999999999999999999999999999999999999998764322   468999


Q ss_pred             cCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeec
Q 016530          172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK  251 (388)
Q Consensus       172 DSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~  251 (388)
                      ||||+++++|++++++|.+++++...                       . +                            
T Consensus       226 DSGTt~~~lP~~~~~~l~~~i~~~~~-----------------------~-~----------------------------  253 (383)
T 2ewy_A          226 DSGTTLLRLPQKVFDAVVEAVARASL-----------------------I-P----------------------------  253 (383)
T ss_dssp             CTTCSSEEEEHHHHHHHHHHHHHTTC-----------------------S-S----------------------------
T ss_pred             EcCCccccCCHHHHHHHHHHHhhhcc-----------------------c-c----------------------------
Confidence            99999999999999999999964310                       0 0                            


Q ss_pred             ccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCC-CceeecCCCC-----CCCCcEEEEECCE--
Q 016530          252 ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM-GESIIDCDRI-----PTMPNVSFTIGDK--  323 (388)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~-~~~~v~C~~~-----~~lP~i~f~~gg~--  323 (388)
                                                                 ..+... ..+.++|...     ..+|+|+|+|+|.  
T Consensus       254 -------------------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~  290 (383)
T 2ewy_A          254 -------------------------------------------EFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENS  290 (383)
T ss_dssp             -------------------------------------------CCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSST
T ss_pred             -------------------------------------------cCccccccccccccccCCcccHhhCCcEEEEECCCCC
Confidence                                                       000000 1135677654     2589999999763  


Q ss_pred             ----EEEeCcccceeeecc-CcccceeE-eeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          324 ----IFNLSPEQYILKTGE-GIAEVCIS-GFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       324 ----~~~l~p~~yi~~~~~-~~~~~C~~-~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                          +++|+|++|+.+..+ .....|+. .+...      .+.||||++|||++|+|||++++|||||+++
T Consensus       291 ~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~------~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  355 (383)
T 2ewy_A          291 SRSFRITILPQLYIQPMMGAGLNYECYRFGISPS------TNALVIGATVMEGFYVIFDRAQKRVGFAASP  355 (383)
T ss_dssp             TEEEEEEECHHHHEEEECCCTTCSEEEEESEEEE------SSCEEECHHHHTTEEEEEETTTTEEEEEECT
T ss_pred             CceEEEEEChHHheeecccCCCCceeEEEEecCC------CCcEEEChHHhCCeeEEEECCCCeEEEEecc
Confidence                799999999987642 22457985 45432      2579999999999999999999999999974

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=100.00  E-value=1.3e-37  Score=312.48  Aligned_cols=262  Identities=23%  Similarity=0.325  Sum_probs=202.5

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCc-EEEEEEeeCCccccccCccEEEeeccCccccCC--CCchhhhhhhcCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQ-VFIEATREGSLTFLLARFDGIIGLGFREIAVGD--AVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~-~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~--~~~~~~~L~~qg~   99 (388)
                      .|.|+.+.+.|.++.|+|+++.  +..+..+ .|++++...+..+....+|||||||++.++...  .++++++|++|+.
T Consensus        84 ~i~Yg~Gs~~G~~~~D~v~ig~--~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~  161 (402)
T 3vf3_A           84 YVPYTQGKWEGELGTDLVSIPH--GPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH  161 (402)
T ss_dssp             EEECSSCEEEEEEEEEEEECTT--SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSC
T ss_pred             EEEECcEEEEEEEEEEEEEECC--ccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccC
Confidence            6888888899999999999983  2344433 467666554432234578999999999988643  7899999999999


Q ss_pred             CCcceEEEEecCCC-----C---CCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceec---CCce
Q 016530          100 VSEEVFSFWLNRDP-----D---AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCE---GGCA  168 (388)
Q Consensus       100 i~~~~FSl~L~~~~-----~---~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~---~~~~  168 (388)
                      |+ ++||+||.+..     .   ....|.|+|||+|++++.|++.|+|+.+..||.|.+++|+++++.+.+..   ....
T Consensus       162 i~-~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~  240 (402)
T 3vf3_A          162 VP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK  240 (402)
T ss_dssp             CC-SCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSSBTTBEECEEEEEETTEECCCCGGGGGSSC
T ss_pred             Cc-cceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCcCcEEEEEEeEEEECCEEecccccccCCCe
Confidence            97 99999997531     0   23589999999999999999999999999999999999999999876422   2567


Q ss_pred             EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016530          169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV  248 (388)
Q Consensus       169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~  248 (388)
                      ++|||||+++++|++++++|.+++++..             .          .                           
T Consensus       241 aiiDSGTt~~~lP~~~~~~i~~~i~~~~-------------~----------~---------------------------  270 (402)
T 3vf3_A          241 SIVDSGTTNLRLPKKVFEAAVKSIKAAS-------------S----------T---------------------------  270 (402)
T ss_dssp             EEECTTCCSEEEEHHHHHHHHHHHHHHT-------------T----------T---------------------------
T ss_pred             EEEECCCCcccCCHHHHHHHHHHHhhhc-------------c----------c---------------------------
Confidence            9999999999999999999999996531             0          0                           


Q ss_pred             eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCC-CCCceeecCCCCC-----CCCcEEEEECC
Q 016530          249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN-PMGESIIDCDRIP-----TMPNVSFTIGD  322 (388)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~-~~~~~~v~C~~~~-----~lP~i~f~~gg  322 (388)
                                                                   ...+. ....+.++|....     .+|+|+|+|++
T Consensus       271 ---------------------------------------------~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g  305 (402)
T 3vf3_A          271 ---------------------------------------------EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG  305 (402)
T ss_dssp             ---------------------------------------------SCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEEC
T ss_pred             ---------------------------------------------cccCccccccccccccccccchHhhCCceEEEEec
Confidence                                                         00000 0112357887654     58999999986


Q ss_pred             E------EEEeCcccceeeeccCc--ccceeE-eeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          323 K------IFNLSPEQYILKTGEGI--AEVCIS-GFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       323 ~------~~~l~p~~yi~~~~~~~--~~~C~~-~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .      +++|+|++|+.+..+..  ...|+. .+..      ..+.||||++|||++|+|||++++|||||+++
T Consensus       306 ~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  374 (402)
T 3vf3_A          306 EVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA  374 (402)
T ss_dssp             SSTTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEE------ESSCEEECHHHHTTEEEEEEGGGTEEEEEEET
T ss_pred             CCCCceEEEEECHHHheehhccCCCCCceEEEEeccC------CCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence            4      59999999999865432  247996 3332      23579999999999999999999999999974

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=100.00  E-value=1.2e-37  Score=313.78  Aligned_cols=257  Identities=17%  Similarity=0.219  Sum_probs=198.4

Q ss_pred             eEEee--eeEEEEEEEeeeEEeecccc--------eEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhh
Q 016530           23 RIRCV--LVLIVHFLNWCPFTWQCACL--------QIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWD   92 (388)
Q Consensus        23 ~~~~~--~~~~~g~~~~d~~~~~~~~~--------~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~   92 (388)
                      +++|.  .+.+.|.++.|+|+++...|        +++++|.||+++.+.+..+.....|||||||++.++      +..
T Consensus        97 ~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~  170 (403)
T 3aup_A           97 MSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPIS------LPN  170 (403)
T ss_dssp             EEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTTS------HHH
T ss_pred             EeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCcC------HHH
Confidence            57775  67889999999999983211        899999999998764332445678999999998765      445


Q ss_pred             hhhhcCCCCcceEEEEecCCCCCCCCcEEEECCCCCCce--e-c-----ceeEeeeccc--ceeEEEEccEEEcCeee-c
Q 016530           93 NMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHF--K-G-----KHTYVPVTKK--GYWQFELGDILIGNQST-G  161 (388)
Q Consensus        93 ~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~--~-g-----~l~~~pv~~~--~~w~v~l~~i~vgg~~~-~  161 (388)
                      +| +++.+.+++||+||.+.+  ...|.|+||| |++++  + |     ++.|+|+...  +||.|.+++|+|+++.+ .
T Consensus       171 ql-~~~~~~~~~FS~~L~~~~--~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~~~~y~v~l~~i~v~g~~~~~  246 (403)
T 3aup_A          171 QL-ASHFGLQRQFTTCLSRYP--TSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFP  246 (403)
T ss_dssp             HH-HHHHTCCSEEEEECCSCT--TSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECTTSCEEECEEEEEETTEEEEC
T ss_pred             HH-HhhcCCCCeEEEEcCCCC--CCCeeEEECC-CchhccccccccccCceeecccccCCCCcceEEEEEEEECCEEccc
Confidence            55 456677899999998853  2489999999 98888  5 5     9999999766  89999999999999887 4


Q ss_pred             eecC--------CceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016530          162 VCEG--------GCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  233 (388)
Q Consensus       162 ~~~~--------~~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c  233 (388)
                      +...        ...+||||||+++++|++++++|.+++.+.-          ..+.                       
T Consensus       247 ~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~----------~~~~-----------------------  293 (403)
T 3aup_A          247 LNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQL----------PKQA-----------------------  293 (403)
T ss_dssp             C------------CCEEECSSCSSEEECHHHHHHHHHHHHHTS----------CGGG-----------------------
T ss_pred             CChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHh----------cccc-----------------------
Confidence            3221        2349999999999999999999999994320          0000                       


Q ss_pred             ccCCcccccccceeeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCC
Q 016530          234 AFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTM  313 (388)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~l  313 (388)
                                   . +                                              .+.....+.++|+.+..+
T Consensus       294 -------------~-~----------------------------------------------~~~~~~~~c~~c~~~~~~  313 (403)
T 3aup_A          294 -------------Q-V----------------------------------------------KSVAPFGLCFNSNKINAY  313 (403)
T ss_dssp             -------------E-E----------------------------------------------CCCTTCSCEECGGGCCCC
T ss_pred             -------------c-c----------------------------------------------CCCCCCCceEECCCcCcC
Confidence                         0 0                                              001123478899887789


Q ss_pred             CcEEEEECCE---EEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEE-Eec
Q 016530          314 PNVSFTIGDK---IFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGF-AEA  387 (388)
Q Consensus       314 P~i~f~~gg~---~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGf-A~~  387 (388)
                      |+|+|+|+|.   .++|+|++|+++..  ....|+ +|+..+.  +.++.||||++|||++|+|||++++|||| |++
T Consensus       314 P~i~f~f~g~~~~~~~l~~~~y~~~~~--~~~~C~-~~~~~~~--~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~  386 (403)
T 3aup_A          314 PSVDLVMDKPNGPVWRISGEDLMVQAQ--PGVTCL-GVMNGGM--QPRAEITLGARQLEENLVVFDLARSRVGFSTSS  386 (403)
T ss_dssp             CCEEEEESSTTCCEEEECHHHHEEEC-----CEEE-CEEECCS--CCSSSEEECHHHHTTSCEEEETTTTEEEEESSC
T ss_pred             CcEEEEEcCCCceEEEEcccceEEEcC--CCeEEE-EEEcCCC--CCCCcEEEChHHhcCeEEEEECCCCEEEEeccc
Confidence            9999999874   99999999999764  246899 8886542  12468999999999999999999999999 775

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=100.00  E-value=1.8e-37  Score=317.28  Aligned_cols=264  Identities=23%  Similarity=0.304  Sum_probs=206.1

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC--CCCchhhhhhhcCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg~i  100 (388)
                      .|.|+.+.+.|.++.|+|+++......+. +.|++++...+..+....+|||||||++.++..  ..++++++|++|+.|
T Consensus       130 ~i~Yg~Gs~~G~~~~Dtv~ig~~~~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i  208 (455)
T 3lpj_A          130 YVPYTQGKWEGELGTDLVSIPHGPNVTVR-ANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV  208 (455)
T ss_dssp             EEECSSCEEEEEEEEEEEECTTSCSCEEE-EEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC
T ss_pred             EEEeCCeEEEEEEEEEEEEECCCcceeeE-EEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCC
Confidence            68899998999999999999832223333 568887765543223457899999999998864  378999999999999


Q ss_pred             CcceEEEEecCCCC--------CCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceec---CCceE
Q 016530          101 SEEVFSFWLNRDPD--------AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCE---GGCAA  169 (388)
Q Consensus       101 ~~~~FSl~L~~~~~--------~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~---~~~~a  169 (388)
                      + ++||+||.+...        ....|.|+|||+|++++.|++.|+|+.+..||.|.+++|+++++.+.+..   ....+
T Consensus       209 ~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~a  287 (455)
T 3lpj_A          209 P-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKS  287 (455)
T ss_dssp             C-SCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCE
T ss_pred             C-ceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCCCceeEEEEeEEEECCEEccccccccCCCeE
Confidence            7 999999986410        23589999999999999999999999999999999999999999876422   25679


Q ss_pred             EEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeee
Q 016530          170 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVV  249 (388)
Q Consensus       170 ivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~  249 (388)
                      +|||||+++++|++++++|.+++++...        ...+.+                                      
T Consensus       288 iiDSGTt~~~lP~~~~~~i~~~i~~~~~--------~~~~~~--------------------------------------  321 (455)
T 3lpj_A          288 IVDSGTTNLRLPKKVFEAAVKSIKAASS--------TEKFPD--------------------------------------  321 (455)
T ss_dssp             EECTTSSSEEEEHHHHHHHHHHHHHHTT--------TSCCCH--------------------------------------
T ss_pred             EEECCCcceeCCHHHHHHHHHHhhhhcc--------ccccCc--------------------------------------
Confidence            9999999999999999999999965310        000000                                      


Q ss_pred             ecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCC-----CCcEEEEECCE-
Q 016530          250 EKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPT-----MPNVSFTIGDK-  323 (388)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~-----lP~i~f~~gg~-  323 (388)
                                                                      .....+.++|.....     +|+|+|+|+|. 
T Consensus       322 ------------------------------------------------~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~  353 (455)
T 3lpj_A          322 ------------------------------------------------GFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV  353 (455)
T ss_dssp             ------------------------------------------------HHHTTCSCEEESTTCCCGGGSCCEEEEEECSS
T ss_pred             ------------------------------------------------ccccCcceecccccCCchhcCCcEEEEEcCCC
Confidence                                                            000123578876554     89999999875 


Q ss_pred             -----EEEeCcccceeeeccCc--ccceeE-eeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          324 -----IFNLSPEQYILKTGEGI--AEVCIS-GFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       324 -----~~~l~p~~yi~~~~~~~--~~~C~~-~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                           +++|+|++|+.+..+..  ...|+. .+..      ..+.||||++|||++|+|||++++|||||+++
T Consensus       354 ~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  420 (455)
T 3lpj_A          354 TNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA  420 (455)
T ss_dssp             TTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEE------ESSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred             cCceEEEEECHHHheEeccCCCCCCceEEEEeccC------CCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence                 59999999999865432  257996 3321      23679999999999999999999999999974

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...

Probab=100.00  E-value=5.6e-37  Score=307.57  Aligned_cols=261  Identities=23%  Similarity=0.320  Sum_probs=201.4

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEee-CcEEEEEEeeCCcccc-ccCccEEEeeccCccccC--CCCchhhhhhhcC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFL-LQVFIEATREGSLTFL-LARFDGIIGLGFREIAVG--DAVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~-~~~Fg~~~~~~~~~f~-~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg   98 (388)
                      .|+|+.+...|.++.|+|+++.  +..++ .+.|+++....+ .|. ...+|||||||++.++..  ..++++++|++|+
T Consensus        77 ~i~Yg~Gs~~G~~~~Dtv~ig~--g~~~~~~~~~~~~~~~~~-~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~  153 (395)
T 2qp8_A           77 YVPYTQGKWEGELGTDLVSIPH--GPNVTVRANIAAITESDK-FFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQT  153 (395)
T ss_dssp             EEECSSCEEEEEEEEEEEECTT--SCSCEEEEEEEEEEEEES-CSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHS
T ss_pred             EEEECCcEEEEEEEeEEEEECC--CCCceEEEEEEEEEccCc-ccccccCccceEEcCchhhccCCCCCCCHHHHHHHcc
Confidence            6888888889999999999973  23333 256777665433 243 356799999999988753  5788999999999


Q ss_pred             CCCcceEEEEecCCCC--------CCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceec---CCc
Q 016530           99 LVSEEVFSFWLNRDPD--------AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCE---GGC  167 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~--------~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~---~~~  167 (388)
                      .++ ++||+||++..-        ....|+|+|||+|++++.|++.|+|+.+..||.|.+++|+|+++.+.+..   ...
T Consensus       154 ~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~  232 (395)
T 2qp8_A          154 HVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYD  232 (395)
T ss_dssp             CCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSS
T ss_pred             CCc-ceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCCCceEEEEEEEEEECCEEcccCccccCCc
Confidence            996 899999986410        12589999999999999999999999989999999999999999875422   246


Q ss_pred             eEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCccccccccee
Q 016530          168 AAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKT  247 (388)
Q Consensus       168 ~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~  247 (388)
                      .+++||||+++++|++++++|.+++++...        ..++                                      
T Consensus       233 ~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~--------~~~~--------------------------------------  266 (395)
T 2qp8_A          233 KSIVDSGTTNLRLPKKVFEAAVKSIKAASS--------TEKF--------------------------------------  266 (395)
T ss_dssp             CEEECTTCCSEEEEHHHHHHHHHHHHHHTT--------TSCC--------------------------------------
T ss_pred             eEEEEcCCCcEecCHHHHHHHHHHHhhhcc--------cccC--------------------------------------
Confidence            799999999999999999999999954310        0000                                      


Q ss_pred             eeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCC-CCceeecCCCCC-----CCCcEEEEEC
Q 016530          248 VVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP-MGESIIDCDRIP-----TMPNVSFTIG  321 (388)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~-~~~~~v~C~~~~-----~lP~i~f~~g  321 (388)
                                                                       +.. ...+.++|....     .+|+|+|+|+
T Consensus       267 -------------------------------------------------~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~  297 (395)
T 2qp8_A          267 -------------------------------------------------PDGFWLGEQLVCWQAGTTPWNIFPVISLYLM  297 (395)
T ss_dssp             -------------------------------------------------CHHHHTTCSCEEESTTCCCGGGSCCEEEEEE
T ss_pred             -------------------------------------------------CccccccccccccccccchHhhCCcEEEEEc
Confidence                                                             000 011246776543     4899999997


Q ss_pred             CE------EEEeCcccceeeecc--Cccccee-EeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          322 DK------IFNLSPEQYILKTGE--GIAEVCI-SGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       322 g~------~~~l~p~~yi~~~~~--~~~~~C~-~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      |.      +++|+|++|+.+..+  .....|+ ..+...      .+.||||++|||++|+|||++++|||||+++
T Consensus       298 g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~------~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~  367 (395)
T 2qp8_A          298 GEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS------STGTVMGAVIMEGFYVVFDRARKRIGFAVSA  367 (395)
T ss_dssp             CSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE------SSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred             cCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCC------CCcEEEChHHhCCeeEEEECCCCEEEEEecc
Confidence            64      799999999998653  2235797 466532      2579999999999999999999999999874

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A

Probab=100.00  E-value=6.2e-37  Score=310.75  Aligned_cols=256  Identities=14%  Similarity=0.154  Sum_probs=197.2

Q ss_pred             eEEee--eeEEEEEEEeeeEEeeccc------ceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhh
Q 016530           23 RIRCV--LVLIVHFLNWCPFTWQCAC------LQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNM   94 (388)
Q Consensus        23 ~~~~~--~~~~~g~~~~d~~~~~~~~------~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L   94 (388)
                      .|+|.  .+...|+++.|+|+++...      +++++++.|||++.+... ....++|||||||++.++      +..+|
T Consensus        96 ~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~-g~~~~~dGIlGLg~~~lS------l~sql  168 (413)
T 3vla_A           96 FPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQ-NLASGVVGMAGLGRTRIA------LPSQF  168 (413)
T ss_dssp             CCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGT-TSCTTCCEEEECSSSSSS------HHHHH
T ss_pred             eeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECccccccc-CcccccccccccCCCCcc------hHHHH
Confidence            45664  4678999999999997322      378999999999876322 123568999999999876      67789


Q ss_pred             hhcCCCCcceEEEEecCCCCCCCCcEEEECCCCCCc-----eecc-eeEeeeccc--------------ceeEEEEccEE
Q 016530           95 VEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKH-----FKGK-HTYVPVTKK--------------GYWQFELGDIL  154 (388)
Q Consensus        95 ~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~-----~~g~-l~~~pv~~~--------------~~w~v~l~~i~  154 (388)
                      .+|+.+ +++||+||.+..  ...|+|+|||+|..+     +.|+ +.|+|+..+              .||.|++++|+
T Consensus       169 ~~~~~i-~~~FS~cL~~~~--~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~Is  245 (413)
T 3vla_A          169 ASAFSF-KRKFAMCLSGST--SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIK  245 (413)
T ss_dssp             HHHHTC-CSEEEEECCSCS--SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEE
T ss_pred             hhhcCC-CceEEEeCCCCC--CCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEEEEEEEE
Confidence            999988 899999999853  258999999998753     6788 999999764              79999999999


Q ss_pred             EcCeeeceec--------CCceEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhh
Q 016530          155 IGNQSTGVCE--------GGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKV  226 (388)
Q Consensus       155 vgg~~~~~~~--------~~~~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~  226 (388)
                      ||++.+.+..        ++..+||||||+++++|++++++|.+++.+.-          .          ...+...  
T Consensus       246 Vgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~----------~----------~~~~~~~--  303 (413)
T 3vla_A          246 INSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKES----------A----------ARNITRV--  303 (413)
T ss_dssp             ETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHH----------H----------HTTCCEE--
T ss_pred             ECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHh----------c----------ccCCCcC--
Confidence            9999876432        34689999999999999999999999995320          0          0000000  


Q ss_pred             hhhccccccCCcccccccceeeeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeec
Q 016530          227 CQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIID  306 (388)
Q Consensus       227 c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~  306 (388)
                                                                                            +.  ..+..+
T Consensus       304 ----------------------------------------------------------------------~~--~~~~~~  311 (413)
T 3vla_A          304 ----------------------------------------------------------------------AS--VAPFGA  311 (413)
T ss_dssp             ----------------------------------------------------------------------CC--CTTCSC
T ss_pred             ----------------------------------------------------------------------CC--CCCCcc
Confidence                                                                                  00  001123


Q ss_pred             CCCC---------CCCCcEEEEECC--EEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEE
Q 016530          307 CDRI---------PTMPNVSFTIGD--KIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVF  375 (388)
Q Consensus       307 C~~~---------~~lP~i~f~~gg--~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~Vf  375 (388)
                      |...         ..+|+|+|+|+|  +.|+|+|++|+++..+  ...|+ +|...+.  +.++.||||+.|||++|+||
T Consensus       312 C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~--~~~~~~IlGd~fl~~~~vvf  386 (413)
T 3vla_A          312 CFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCL-GVVDGGS--NLRTSIVIGGHQLEDNLVQF  386 (413)
T ss_dssp             EEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEET--TEEEE-CEEEEES--SCSSSEEECHHHHTTEEEEE
T ss_pred             eeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCC--CcEEE-EEEecCC--CcccceeEehhhhcCeEEEE
Confidence            3322         268999999987  8999999999998653  35798 6665542  13468999999999999999


Q ss_pred             eCCCCeEEEEec
Q 016530          376 DSGKLRIGFAEA  387 (388)
Q Consensus       376 D~~~~rIGfA~~  387 (388)
                      |++++|||||++
T Consensus       387 D~~~~riGfa~~  398 (413)
T 3vla_A          387 DLATSRVGFSGT  398 (413)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCEEEEEEe
Confidence            999999999986

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A

Probab=100.00  E-value=3.5e-36  Score=300.99  Aligned_cols=263  Identities=17%  Similarity=0.190  Sum_probs=190.9

Q ss_pred             eEEeeeeE-EEEEEEeeeEEeeccc-ceEeeCc----EEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhh
Q 016530           23 RIRCVLVL-IVHFLNWCPFTWQCAC-LQIFLLQ----VFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVE   96 (388)
Q Consensus        23 ~~~~~~~~-~~g~~~~d~~~~~~~~-~~~v~~~----~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~   96 (388)
                      .|+|+.+. ++|+++.|+|+++... ++.+++|    .||+++.+.+..+ ...+|||||||+++++      +..+|.+
T Consensus        84 ~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~-~~~~dGIlGLg~~~~s------~~~ql~~  156 (381)
T 1t6e_X           84 PYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL-PRGSTGVAGLANSGLA------LPAQVAS  156 (381)
T ss_dssp             CBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS-CTTEEEEEECSSSTTS------HHHHHHH
T ss_pred             cccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCC-CCCCceEEEeCCCcch------hHHHHhh
Confidence            46777665 4899999999998422 3677776    4599987532223 3578999999998776      5678988


Q ss_pred             cCCCCcceEEEEecCCCCCCCCcEEEECCCCCC--ceecceeEeeeccc---ceeEEEEccEEEcCeeeceecC---Cce
Q 016530           97 QGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPK--HFKGKHTYVPVTKK---GYWQFELGDILIGNQSTGVCEG---GCA  168 (388)
Q Consensus        97 qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~--~~~g~l~~~pv~~~---~~w~v~l~~i~vgg~~~~~~~~---~~~  168 (388)
                      |++ .+++||+||.+.    ..|+|+|||+|..  ++.|++.|+|+..+   .+|.|.+++|+||++.+.++..   +..
T Consensus       157 ~~~-~~~~FS~~L~~~----~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~  231 (381)
T 1t6e_X          157 AQK-VANRFLLCLPTG----GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGG  231 (381)
T ss_dssp             HHT-CCSEEEEECCSS----SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTC
T ss_pred             hcc-cCceEEEEeCCC----CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEecCCHHHccCCC
Confidence            885 489999999875    3899999998764  47899999999753   4666999999999998765433   356


Q ss_pred             EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016530          169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV  248 (388)
Q Consensus       169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~  248 (388)
                      +|+||||+++++|++++++|.+++.+.-         ..++..      -+.+.+                         
T Consensus       232 ~iiDTGTtl~~lp~~~~~~l~~~~~~~~---------~~~~~~------g~~~~~-------------------------  271 (381)
T 1t6e_X          232 VMLSTRLPYVLLRPDVYRPLMDAFTKAL---------AAQHAN------GAPVAR-------------------------  271 (381)
T ss_dssp             EEECSSCSSEEECHHHHHHHHHHHHHHH---------HHC-------------CC-------------------------
T ss_pred             EEEECCCccEEeCHHHHHHHHHHHHHhh---------cccccc------cccccc-------------------------
Confidence            9999999999999999999999884320         000000      000000                         


Q ss_pred             eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCC---------CCCCcEEEE
Q 016530          249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI---------PTMPNVSFT  319 (388)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~---------~~lP~i~f~  319 (388)
                                                                     .+. .....++|...         ..+|+|+|+
T Consensus       272 -----------------------------------------------~~~-~~~~~~~C~~~~~~~~~~~~~~~P~i~f~  303 (381)
T 1t6e_X          272 -----------------------------------------------AVE-AVAPFGVCYDTKTLGNNLGGYAVPNVQLG  303 (381)
T ss_dssp             -----------------------------------------------EEC-CCTTCSCEEEGGGCCEETTEECCCCEEEE
T ss_pred             -----------------------------------------------cCC-CCCCCCccCCCCCCcccccCCcCCeEEEE
Confidence                                                           000 00111344322         268999999


Q ss_pred             EC-CEEEEeCcccceeeeccCcccceeEeeEeccCC---CCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          320 IG-DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLP---PPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       320 ~g-g~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~---~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      |+ |+.++|+|++|+++..+  ...|+ +|...+.+   .+.++.||||+.|||++|+|||++++|||||+++
T Consensus       304 f~gg~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~  373 (381)
T 1t6e_X          304 LDGGSDWTMTGKNSMVDVKQ--GTACV-AFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP  373 (381)
T ss_dssp             ETTSCEEEECHHHHEEEEET--TEEEE-SEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred             ECCCcEEEeCCCeEEEEcCC--CeEEE-EEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence            97 59999999999997642  35798 57765421   1123689999999999999999999999999974

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=99.96  E-value=2.6e-28  Score=229.71  Aligned_cols=165  Identities=58%  Similarity=0.965  Sum_probs=149.9

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|+|+.+.+.|.++.|+|+++   ++++++|.||+++.+.+..|....+|||||||++.++    .|++++|++||+|++
T Consensus        74 ~i~Yg~Gs~~G~~~~D~v~~g---~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s----~p~~~~l~~qg~i~~  146 (239)
T 1b5f_A           74 AIIYGTGSITGFFSQDSVTIG---DLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTIS----VPVWYNMLNQGLVKE  146 (239)
T ss_dssp             EEECSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSS----CCHHHHHHHTTCCSS
T ss_pred             EEEECCCcEEEEEEEEEEEEC---CcEEccEEEEEEEeccCccccccCcceEEecCccccc----cHHHHHHHHCCCCCC
Confidence            578888888999999999999   8999999999999887656777788999999999876    578899999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+||.+.++....|+|+|||+|++++.|++.|+|+.+.+||.|.+++|+|+++.+.++..+..+++||||+++++|+
T Consensus       147 ~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~  226 (239)
T 1b5f_A          147 RRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPT  226 (239)
T ss_dssp             SEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEEETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECH
T ss_pred             CEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEcccCCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCH
Confidence            99999999864444689999999999999999999999989999999999999999877666778999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 016530          183 PVVTEINHAIGG  194 (388)
Q Consensus       183 ~~~~~i~~~i~~  194 (388)
                      +++++|.+++++
T Consensus       227 ~~~~~i~~~iga  238 (239)
T 1b5f_A          227 AIVTQINHAIGA  238 (239)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999975

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=99.84  E-value=5.5e-21  Score=153.35  Aligned_cols=87  Identities=66%  Similarity=1.107  Sum_probs=77.0

Q ss_pred             CceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCC
Q 016530          301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKL  380 (388)
Q Consensus       301 ~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~  380 (388)
                      |.|.+||+.+.++|+|+|+|+|+.++|+|++|+.+........|+++|++.+.+ +.++.||||++|||++|+|||++++
T Consensus         1 G~y~v~C~~~~~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~-~~~~~~ILGd~Fl~~~y~vfD~~~~   79 (87)
T 1b5f_B            1 EELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDAT-LLGPLWILGDVFMRPYHTVFDYGNL   79 (87)
T ss_dssp             CCCEECGGGGGGCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCB-SSSBEEEECHHHHTTEEEEEETTTT
T ss_pred             CcEEEECCCCCcCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCC-CCCCeEEechHHhccEEEEEECCCC
Confidence            568999998888999999999999999999999987554456899999987654 4557899999999999999999999


Q ss_pred             eEEEEecC
Q 016530          381 RIGFAEAA  388 (388)
Q Consensus       381 rIGfA~~~  388 (388)
                      |||||+++
T Consensus        80 riGfA~~~   87 (87)
T 1b5f_B           80 LVGFAEAA   87 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999975

>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}

Probab=99.79  E-value=2.8e-20  Score=156.13  Aligned_cols=105  Identities=61%  Similarity=1.111  Sum_probs=78.2

Q ss_pred             CCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeeccc--ccCCCCcccchhhhhHH
Q 016530          193 GGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKEN--VSAGDSAVCSACEMAVV  270 (388)
Q Consensus       193 ~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  270 (388)
                      +++|+++.+|+.+|++|++.|+++|.++++|+.+|+++++|..++.+.++.+++.++++.+  .+.++...|++|+++|+
T Consensus         2 ~a~g~~~~~C~~~V~~Y~~~ii~~l~~~~~P~~iC~~lglC~~~~~~~~~~~i~~vv~~~~~~~~~~~~~~C~~Ce~~V~   81 (108)
T 3rfi_A            2 SAMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEGSSVGEAPLCTACEMAVV   81 (108)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSSCC------------------------CCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCcCCCcccccccccccccccccccccCCCCCcChhHHHHHH
Confidence            3557889999999999999999999999999999999999999888777766677666542  12258899999999999


Q ss_pred             HHHHHhhhchhHHHHHHHhhhhccCCC
Q 016530          271 WVQNQLKQKQTKEKVLSYINELCDSLP  297 (388)
Q Consensus       271 ~~~~~~~~~~t~~~i~~~~~~~c~~~p  297 (388)
                      |+++.|++|+|+++|+.+++++|+++|
T Consensus        82 ~ie~~L~~N~Te~eI~~~l~k~C~~LP  108 (108)
T 3rfi_A           82 WMQNQLKQEGTKEKVLEYVNQLCEKIP  108 (108)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999987

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A

Probab=97.56  E-value=3.9e-05  Score=61.34  Aligned_cols=39  Identities=38%  Similarity=0.734  Sum_probs=35.2

Q ss_pred             eecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccC
Q 016530          198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFN  236 (388)
Q Consensus       198 ~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~  236 (388)
                      ++.+|+.+|++|++.|+++|.++.+|+.+|+.+++|..+
T Consensus        46 ~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~~~   84 (91)
T 2qyp_A           46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGT   84 (91)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHTCCHHHHHHTTTCC---
T ss_pred             cccchHHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCCCc
Confidence            689999999999999999999999999999999999764

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A

Probab=97.40  E-value=4.5e-05  Score=58.94  Aligned_cols=37  Identities=30%  Similarity=0.679  Sum_probs=35.7

Q ss_pred             eecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccc
Q 016530          198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  234 (388)
Q Consensus       198 ~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~  234 (388)
                      ++.+|+.+|++|++.|+++|.++++|+.+|+.+++|+
T Consensus        43 ~~~~C~~~v~~y~~~ii~~l~~~~~P~~iC~~l~~C~   79 (80)
T 3bqp_A           43 YQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACP   79 (80)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHTTSSC
T ss_pred             cchhhHHHHHHHHHHHHHHHHHCCCHHHHHhhcCCCC
Confidence            6899999999999999999999999999999999996

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A

Probab=97.35  E-value=5.6e-05  Score=59.16  Aligned_cols=38  Identities=39%  Similarity=0.749  Sum_probs=35.7

Q ss_pred             eecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccccc
Q 016530          198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAF  235 (388)
Q Consensus       198 ~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~  235 (388)
                      ++.+|+.+|++|++.|+++|.++++|+.+|+.+++|+.
T Consensus        45 ~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~~   82 (83)
T 2gtg_A           45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSG   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTSCC-
T ss_pred             chhHHHHHHHHHHHHHHHHHHHCCCHHHHHHhcCCCCC
Confidence            68899999999999999999999999999999999964

>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A

Probab=97.29  E-value=9.2e-05  Score=59.14  Aligned_cols=50  Identities=22%  Similarity=0.585  Sum_probs=42.9

Q ss_pred             CCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCC
Q 016530          257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDR  309 (388)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~  309 (388)
                      ++...|.+|+++|.+++..|+++.|+++|..+++++|..+|...   ...|..
T Consensus         3 ~~~~~C~~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~~lp~~~---~~~C~~   52 (91)
T 2qyp_A            3 VSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSL---SEECQE   52 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTSCSST---TTTHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHCCCCc---ccchHH
Confidence            35678999999999999999999999999999999999998642   345653

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*

Probab=97.27  E-value=0.00014  Score=56.87  Aligned_cols=41  Identities=37%  Similarity=0.715  Sum_probs=38.6

Q ss_pred             CcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCC
Q 016530          259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP  299 (388)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~  299 (388)
                      ...|.+|+++|.++++.++++.|+++|..+++++|.++|..
T Consensus         3 ~~~C~~C~~~v~~~~~~l~~n~t~~~I~~~l~~~C~~lp~~   43 (83)
T 4ddj_A            3 SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP   43 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTSCTT
T ss_pred             CCcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHhCCCc
Confidence            46799999999999999999999999999999999999864

>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A

Probab=97.23  E-value=8.9e-05  Score=60.85  Aligned_cols=37  Identities=30%  Similarity=0.505  Sum_probs=35.7

Q ss_pred             eecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccc
Q 016530          198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  234 (388)
Q Consensus       198 ~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~  234 (388)
                      +..+|+.+|++|.+.|+++|.++.+|+.+|+.+++|+
T Consensus        63 ~~~~C~~~V~~y~~~II~~L~~~~~P~~VC~~L~lC~   99 (99)
T 2js9_A           63 GTRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNECP   99 (99)
T ss_dssp             HHHHHHTTTTTTHHHHHHHHHHTCCTTHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCC
Confidence            6899999999999999999999999999999999995

>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1

Probab=97.22  E-value=0.00021  Score=55.71  Aligned_cols=46  Identities=17%  Similarity=0.408  Sum_probs=39.6

Q ss_pred             HHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccc
Q 016530          186 TEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  234 (388)
Q Consensus       186 ~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~  234 (388)
                      +.+=+.++.   +..+|+.+|++|.+.|+++|.++.+|+.+|..+++|.
T Consensus        32 ~~~C~~lp~---~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC~   77 (78)
T 1nkl_A           32 SQVCDKLKI---LRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICK   77 (78)
T ss_dssp             HHHHHHSCS---THHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCSC
T ss_pred             HHHHhhCch---hHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhccCCCC
Confidence            334444543   6899999999999999999999999999999999995

>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A

Probab=97.21  E-value=0.00016  Score=55.75  Aligned_cols=46  Identities=28%  Similarity=0.689  Sum_probs=40.9

Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCD  308 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~  308 (388)
                      ..|.+|+++|.+++..++++.|+++|...++++|.++|..   +...|.
T Consensus         3 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~~---~~~~C~   48 (80)
T 3bqp_A            3 GFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP---YQKQCD   48 (80)
T ss_dssp             TTHHHHHHHHHHHHHHSCTTCCHHHHHHHHHHHGGGSCGG---GHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCCCc---cchhhH
Confidence            5799999999999999999999999999999999999863   344565

>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4

Probab=97.15  E-value=0.00021  Score=55.67  Aligned_cols=41  Identities=27%  Similarity=0.507  Sum_probs=38.1

Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCC
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP  299 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~  299 (388)
                      |...|.+|+++|+.++..+.++ |++.|+..++++|+++|..
T Consensus         1 ~~~~C~~C~~vv~~ve~~l~~n-t~~~I~~~l~~~C~~lp~~   41 (77)
T 1of9_A            1 GEILCNLCTGLINTLENLLTTK-GADKVKDYISSLCNKASGF   41 (77)
T ss_dssp             CCSSHHHHHHHHHHHHHHCSSS-CSHHHHHHHHHHHTTCSST
T ss_pred             CCCcchhHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHcCChH
Confidence            4678999999999999999999 9999999999999999754

>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A

Probab=97.10  E-value=0.00027  Score=55.22  Aligned_cols=42  Identities=24%  Similarity=0.611  Sum_probs=38.4

Q ss_pred             CCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 016530          257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  298 (388)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~  298 (388)
                      ++...|.+|+++|.+++..++++.|++.|...++++|..+|.
T Consensus         2 ~~~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~   43 (83)
T 2gtg_A            2 DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPK   43 (83)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSSCH
T ss_pred             CCCCcChhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHCCC
Confidence            367889999999999999999999999999999999999985

>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1

Probab=97.10  E-value=0.00021  Score=55.47  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=36.1

Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  298 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~  298 (388)
                      ..|.+|+++|+.+++.+ ++.|++.|+..++++|.++|.
T Consensus         2 ~~C~~C~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l~~   39 (74)
T 1l9l_A            2 RDYRTCLTIVQKLKKMV-DKPTQRSVSNAATRVCRTGRS   39 (74)
T ss_dssp             HHHHHHHHHHHHHHHHC-SSCCHHHHHHHHHHGGGSSCH
T ss_pred             CCChHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHhCCh
Confidence            36999999999999999 999999999999999999985

>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4

Probab=97.06  E-value=0.00015  Score=56.42  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=35.4

Q ss_pred             eeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016530          197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  233 (388)
Q Consensus       197 ~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c  233 (388)
                      .+..+|+.+|++|.+.|+++|.++.+|+.+|+.+++|
T Consensus        41 ~~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC   77 (77)
T 1of9_A           41 FIATLCTKVLDFGIDKLIQLIEDKVDANAICAKIHAC   77 (77)
T ss_dssp             TTHHHHHHHHHHCHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCC
Confidence            3689999999999999999999999999999999998

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*

Probab=96.98  E-value=0.00017  Score=56.45  Aligned_cols=37  Identities=35%  Similarity=0.710  Sum_probs=34.7

Q ss_pred             eecchhhhhhhhhhhHHHHHhhC-CCchhhhhhccccc
Q 016530          198 VSAECKLVVSQYGDLIWDLLVSG-LLPEKVCQQIGLCA  234 (388)
Q Consensus       198 ~~~~~~~~~~~y~~~i~~~l~~~-~~p~~~c~~~~~c~  234 (388)
                      ++.+|+.+|++|++.|+++|.++ .+|+.+|+.+++|.
T Consensus        45 ~~~~C~~~v~~y~~~ii~~l~~~~~~p~~vC~~l~lC~   82 (83)
T 4ddj_A           45 MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCE   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTSCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCHHHHHhHcCCCC
Confidence            57899999999999999999998 59999999999995

>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3

Probab=96.88  E-value=0.00029  Score=55.18  Aligned_cols=37  Identities=24%  Similarity=0.718  Sum_probs=33.4

Q ss_pred             eeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccc
Q 016530          197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  234 (388)
Q Consensus       197 ~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~  234 (388)
                      .++.+|+.+|++|++.+.++|. ..+|+++|+++++|+
T Consensus        44 ~~~~~C~~~V~~y~~~ii~~l~-~~~P~~iC~~lglC~   80 (81)
T 1n69_A           44 GMADICKNYISQYSEIAIQMMM-HMQPKEICALVGFCD   80 (81)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhcCCCC
Confidence            3789999999999998888776 699999999999995

>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1

Probab=96.81  E-value=0.00042  Score=54.01  Aligned_cols=39  Identities=15%  Similarity=0.429  Sum_probs=37.2

Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  298 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~  298 (388)
                      ..|.+|+++|+.++..++++.|+++|+..++++|+++|.
T Consensus         2 ~~C~~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~lp~   40 (78)
T 1nkl_A            2 YFCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI   40 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCS
T ss_pred             CcchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCch
Confidence            369999999999999999999999999999999999986

>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3

Probab=96.79  E-value=0.00064  Score=53.16  Aligned_cols=41  Identities=24%  Similarity=0.444  Sum_probs=38.4

Q ss_pred             CcccchhhhhHHHHHHHhhhchhH-HHHHHHhhhhccCCCCC
Q 016530          259 SAVCSACEMAVVWVQNQLKQKQTK-EKVLSYINELCDSLPNP  299 (388)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~t~-~~i~~~~~~~c~~~p~~  299 (388)
                      ...|..|+++|+.++..++++.|+ ++|...++++|+++|..
T Consensus         3 ~~~C~~C~~~V~~ve~~l~~n~t~~~~I~~~l~~~C~~lp~~   44 (81)
T 1n69_A            3 GDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPG   44 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGCTT
T ss_pred             CCcchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHcCcH
Confidence            468999999999999999999999 99999999999999853

>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1

Probab=96.42  E-value=0.00099  Score=51.69  Aligned_cols=34  Identities=18%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             eecchhhhhhhhhhhHHHHHhhCCCchhhhhhcc
Q 016530          198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIG  231 (388)
Q Consensus       198 ~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~  231 (388)
                      +..+|+.+|++|++.|+++|.++.+|..+|.+++
T Consensus        41 ~~~~C~~~V~~y~~~Ii~~L~~~~~P~~IC~~ik   74 (74)
T 1l9l_A           41 WRDVCRNFMRRYQSRVIQGLVAGETAQQICEDLR   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcC
Confidence            6789999999999999999999999999998764

>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A

Probab=96.36  E-value=0.00049  Score=56.38  Aligned_cols=52  Identities=15%  Similarity=0.334  Sum_probs=44.2

Q ss_pred             CCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCC
Q 016530          257 GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI  310 (388)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~  310 (388)
                      ++...|.+|+++|..++..+  ++|+++|+..++++|+.+|.....+.-.|..+
T Consensus        19 ~~~~~C~~C~~vV~~ve~~l--n~t~~~I~~~L~~~C~~lp~~ipf~~~~C~~~   70 (99)
T 2js9_A           19 RSALSCQMCELVVKKYEGSA--DKDANVIKKDFDAECKKLFHTIPFGTRECDHY   70 (99)
T ss_dssp             CCSSTHHHHHHHHHHHTTTS--SCCHHHHHHHHHHHHHTGGGGSTTHHHHHHTT
T ss_pred             CCCCcchhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence            57889999999999999999  77899999999999999986534455678754

>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}

Probab=95.52  E-value=0.0042  Score=49.70  Aligned_cols=51  Identities=24%  Similarity=0.334  Sum_probs=41.3

Q ss_pred             HHHHHHHHHh-CCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016530          183 PVVTEINHAI-GGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  233 (388)
Q Consensus       183 ~~~~~i~~~i-~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c  233 (388)
                      ..+++.-+.+ ++.+..+++|+.++++|.+.|+..|.++.+|+.+|+.+..|
T Consensus        36 ~~~d~~Ckk~~~~ip~a~k~C~~~v~~~~d~II~eLe~g~~P~~VC~~L~~C   87 (87)
T 3s64_A           36 KEFIQGCMTLIGWLPYAEKECKALAKIEMGAIKTLLENGSAPEEICTTLHAC   87 (87)
T ss_dssp             HHHHHHHHHHHCSSTTHHHHHHHHHHHHHHHHHHHHHTTCCTTTHHHHHHCC
T ss_pred             HHHHHHHHHhcccCCchHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHhccC
Confidence            3444444444 44445689999999999999999999999999999998877

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=91.21  E-value=0.59  Score=39.55  Aligned_cols=26  Identities=12%  Similarity=-0.004  Sum_probs=23.2

Q ss_pred             ceEEcHhhhcceEEEEeCCCCeEEEE
Q 016530          360 LWILGDVFMGVYHTVFDSGKLRIGFA  385 (388)
Q Consensus       360 ~~ILG~~Flr~~y~VfD~~~~rIGfA  385 (388)
                      ..|||..||+++-...|+.++++-|.
T Consensus       109 d~iLG~d~L~~~~~~ID~~~~~l~l~  134 (148)
T 2i1a_A          109 DVLIGLDMLKRHLACVDLKENVLRIA  134 (148)
T ss_dssp             SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred             CeEecHHHHhhCCEEEECCCCEEEEc
Confidence            35999999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1qdma1	104	a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Horde	4e-34
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	2e-29
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	2e-25
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	2e-28
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	3e-27
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	4e-28
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	3e-24
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	7e-27
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	1e-24
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	1e-26
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	7e-26
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	2e-26
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	2e-25
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	4e-26
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	5e-26
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	5e-26
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	2e-24
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	9e-24
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	3e-16
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	1e-23
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	4e-23
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	6e-23
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	8e-15
d2bjua1	329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	6e-22
d2bjua1	329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	9e-19
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	6e-22
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	9e-16
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	2e-20
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	3e-20
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	4e-20
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	6e-15
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	4e-20
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	9e-19
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	4e-20
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	2e-14
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	9e-20
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	1e-19
d1t6ex_	381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	1e-18
d1t6ex_	381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	7e-13
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	2e-18
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	9e-18
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	8e-18
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	1e-11
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	3e-17
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	3e-16
d1of9a_	77	a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica	6e-12
d1of9a_	77	a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica	0.003
d2gtga1	78	a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens)	2e-11
d2gtga1	78	a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens)	2e-08
d1nkla_	78	a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [Tax	9e-11
d1nkla_	78	a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [Tax	4e-05
d1n69a_	78	a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax	1e-06
d1n69a_	78	a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax	0.001
d1l9la_	74	a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Hom	7e-06

>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 104

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Swaposin
domain: (Pro)phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  120 bits (301), Expect = 4e-34
 Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 3/104 (2%)

Query: 197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSA 256
           VVS ECK +VSQYG  I DLL++   P+K+C Q+GLC F+G   VS GI++VV+ E V +
Sbjct: 1   VVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKS 60

Query: 257 ---GDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLP 297
                  +CSACEMAVVW+QNQL Q +T++ +L Y+N+LC+ LP
Sbjct: 61  NGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLP 104

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  114 bits (285), Expect = 2e-29
 Identities = 68/106 (64%), Positives = 81/106 (76%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
             +++ INE   +  +PMGES +DC  + +MP++ FTIG K F L PE+YILK GEG A 
Sbjct: 232 TAIITEINEKIGAAGSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAA 291

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            CISGF A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct: 292 QCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 337

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  103 bits (256), Expect = 2e-25
 Identities = 101/142 (71%), Positives = 122/142 (85%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q FIEAT+E  +TFL+A+FDGI+GLGF+EI+VG AVPVW  M+EQGLVS+ VFSFWLNR 
Sbjct: 103 QEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRH 162

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D  EGGEI+FGG+DPKH+ G+HTYVPVT+KGYWQF++GD+L+G +STG C GGCAAI D
Sbjct: 163 VDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIAD 222

Query: 173 SGTSLLAGPTPVVTEINHAIGG 194
           SGTSLLAGPT ++TEIN  IG 
Sbjct: 223 SGTSLLAGPTAIITEINEKIGA 244

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 2e-28
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 2/168 (1%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q F E T+   + F+LA+FDG++G+GF   AVG   PV+D+++ QG++ E+VFS + NR 
Sbjct: 103 QTFGEVTQLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRG 162

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
           P     GE+V GG DP+H++G   YV ++K   WQ  +  + +G+ ST +CE GC  +VD
Sbjct: 163 PHLLG-GEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGS-STLLCEEGCEVVVD 220

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSG 220
           +G+S ++ PT  +  I  A+G +     E  +  SQ   L       G
Sbjct: 221 TGSSFISAPTSSLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLG 268

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 3e-27
 Identities = 35/103 (33%), Positives = 58/103 (56%)

Query: 285 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 344
            L  I +   +    + E ++ C ++PT+P++SF +G + + LS   Y+L+      ++C
Sbjct: 232 SLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLC 291

Query: 345 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
                A D+PPP GP+W+LG  F+  ++T FD    RIGFA A
Sbjct: 292 TVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 334

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  111 bits (277), Expect = 4e-28
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
              ++ I     +  N  GE +I C  I ++P++ FTI    + LSP  YIL+  +    
Sbjct: 269 TSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDS--- 325

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            C SGF   D+P   G LWILGDVF+  Y+TVFD    ++G A  A
Sbjct: 326 -CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  100 bits (249), Expect = 3e-24
 Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 3/142 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q+F  +  E       A FDGI+GL +  I+   A PV+DN+ +QGLVS+++FS +L+ +
Sbjct: 143 QIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN 202

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
            D+  G  ++ GG+D  ++ G   +VPV+ +GYWQ  L  I +  ++   C GGC AIVD
Sbjct: 203 DDS--GSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETI-ACSGGCQAIVD 259

Query: 173 SGTSLLAGPTPVVTEINHAIGG 194
           +GTSLL GPT  +  I   IG 
Sbjct: 260 TGTSLLTGPTSAIANIQSDIGA 281

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 2e-26
 Identities = 31/86 (36%), Positives = 49/86 (56%)

Query: 302 ESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLW 361
           + ++ C+  PT+P++SF +G K + L+   Y+ +      ++C     A D+PPP GP W
Sbjct: 251 DYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTW 310

Query: 362 ILGDVFMGVYHTVFDSGKLRIGFAEA 387
            LG  F+  ++T FD    RIGFA A
Sbjct: 311 ALGATFIRKFYTEFDRRNNRIGFALA 336

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-25
 Identities = 60/157 (38%), Positives = 99/157 (63%), Gaps = 3/157 (1%)

Query: 40  FTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGL 99
                    I + Q+F E T   +L F+LA FDG++G+GF E A+G   P++DN++ QG+
Sbjct: 90  SQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGV 149

Query: 100 VSEEVFSFWLNRDPDAEE--GGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGN 157
           + E+VFSF+ NRD +  +  GG+IV GG DP+H++G   Y+ + K G WQ ++  + +G+
Sbjct: 150 LKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGS 209

Query: 158 QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 194
            +  +CE GC A+VD+G S ++G T  + ++  A+G 
Sbjct: 210 STL-LCEDGCLALVDTGASYISGSTSSIEKLMEALGA 245

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score =  104 bits (260), Expect = 5e-26
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLN-R 111
           Q F EAT E  LTF   +FDGI+GLG+  I+V   VP + N ++Q L+ E+ F+F+L   
Sbjct: 100 QDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDT 159

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIV 171
             D E GGE  FGG+D   FKG  T++PV +K YW+ +   I +G++   +   G    +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGA--AI 217

Query: 172 DSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIW 214
           D+GTSL+  P+ +   IN  IG +   + +  L  +   +L  
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPD 260

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 285 VLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVC 344
           +   IN    +     G+  +DC+    +P++ F      F + P  Y L+        C
Sbjct: 230 LAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSG----SC 285

Query: 345 ISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           IS     D P P GPL I+GD F+  Y++++D G   +G A+A
Sbjct: 286 ISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 99.3 bits (246), Expect = 9e-24
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
            + L+      + +  P     +       MP + F   +  + L PE Y+    E    
Sbjct: 270 SEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDT 329

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           +C+   +  D+       +ILGD FM  Y TVFD  K  +GFA A
Sbjct: 330 LCMITMLPVDID---SNTFILGDPFMRKYFTVFDYDKESVGFAIA 371

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 77.3 bits (189), Expect = 3e-16
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 7/171 (4%)

Query: 42  WQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVS 101
                L +    + +  T +    +    FDGI+GLG++++++G   P+   +  Q  + 
Sbjct: 137 VTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKID 196

Query: 102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTG 161
             +F+F+L         G +  GG++ K ++G  TY  +    YWQ +L           
Sbjct: 197 NALFTFYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQ---- 250

Query: 162 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL 212
                   IVDSGT+ +  P+  + +    +    V      +      ++
Sbjct: 251 -TMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEM 300

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score = 98.1 bits (243), Expect = 1e-23
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 300 MGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGP 359
            GE + +C  + ++P+++FTI      L P  YI    EG    C SG  +  +P     
Sbjct: 240 QGEMMGNCASVQSLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSE 295

Query: 360 LWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
           LWI GDVF+  Y+T++D    ++GFA AA
Sbjct: 296 LWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score = 96.6 bits (239), Expect = 4e-23
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 4/142 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q   E+  E       A FDGI+GL +  IA   AVPV+DNM  Q LV +++FSF+L+  
Sbjct: 99  QELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGG 158

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                G E++ GGVD  H+ G   ++PVT + YWQ  L  I +  Q+      GC AIVD
Sbjct: 159 GA--NGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTA--ACEGCQAIVD 214

Query: 173 SGTSLLAGPTPVVTEINHAIGG 194
           +GTS +  P   +  I   IG 
Sbjct: 215 TGTSKIVAPVSALANIMKDIGA 236

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 6e-23
 Identities = 44/226 (19%), Positives = 77/226 (34%), Gaps = 16/226 (7%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGD--AVPVWDNMVEQGLVSEEVFSFWLN 110
                 T         + ++GI+GL + EIA  D    P +D++V+Q  V   +FS  L 
Sbjct: 99  ANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLC 157

Query: 111 R--------DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGV 162
                    +  A  GG ++ GG+D   + G   Y P+ ++ Y++  +  + I  Q   +
Sbjct: 158 GAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKM 217

Query: 163 C---EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDL--L 217
                    +IVDSGT+ L  P  V      +I                   + W     
Sbjct: 218 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTT 277

Query: 218 VSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCS 263
              + P      +G              + +   E+V+        
Sbjct: 278 PWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYK 323

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 8e-15
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 305 IDCDRIPTMPNVSFTIGDKI------FNLSPEQYILKTGE--GIAEVCISGFMAFDLPPP 356
                    P +S  +  ++        + P+QY+    +     + C    +       
Sbjct: 274 AGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAI-----SQ 328

Query: 357 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
                ++G V M  ++ VFD  + RIGFA +A
Sbjct: 329 SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 360

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

 Score = 93.2 bits (230), Expect = 6e-22
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
              L+ + +  D +  P     +       +P   FT  +  + L PE Y+    +    
Sbjct: 224 TDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPG 283

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
           +C+   +  D P    P +ILGD FM  Y TVFD     +G A A
Sbjct: 284 LCMLNIIGLDFP---VPTFILGDPFMRKYFTVFDYDNHSVGIALA 325

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

 Score = 83.9 bits (206), Expect = 9e-19
 Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 7/185 (3%)

Query: 36  NWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMV 95
            +         L +    + +  T     T+  + FDGI+GLG++++++G   P+   + 
Sbjct: 85  FFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELK 144

Query: 96  EQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILI 155
            Q  +   +F+F+L         G +  GG++ + ++G  TY  +    YWQ     I +
Sbjct: 145 NQNKIENALFTFYLPVHDKHT--GFLTIGGIEERFYEGPLTYEKLNHDLYWQ-----ITL 197

Query: 156 GNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWD 215
                 +       IVDSGTS +  PT  + ++   +    V      + +     L   
Sbjct: 198 DAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTF 257

Query: 216 LLVSG 220
              S 
Sbjct: 258 EFTSE 262

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score = 93.5 bits (231), Expect = 6e-22
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 53  QVFIEATREGSLTFLLARF-----DGIIGLGFREIAVGDAV------PVWDNMVEQGLVS 101
           Q           T   +       DGI G  + +    +A        V  N+ +QGL+S
Sbjct: 102 QTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLIS 161

Query: 102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGN 157
             VFS ++N +     GG++VFGGV+     G   Y  V K      +W   +  + I  
Sbjct: 162 SPVFSVYMNTNDG---GGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDG 218

Query: 158 QSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAEC 202
                 +G  A  +D+GT+    P+    ++  A   +   S + 
Sbjct: 219 SDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATESQQG 263

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score = 75.4 bits (184), Expect = 9e-16
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 301 GESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFM-AFDLPPPRGP 359
           G ++       +    S  +     +       +   + +  V  SG    F + P  G 
Sbjct: 263 GYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGN 322

Query: 360 LWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            +I+G++F+  +  V+D GK RIGFA  A
Sbjct: 323 QFIVGNLFLRFFVNVYDFGKNRIGFAPLA 351

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.9 bits (219), Expect = 2e-20
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
              +  I +   +  N  GE  IDCD +  MP V F I  K++ L+P  Y  +       
Sbjct: 226 SSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQG---- 281

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            C SGF            WILGDVF+  Y++VFD     +G A+A
Sbjct: 282 FCTSGFQ----SENHSQKWILGDVFIREYYSVFDRANNLVGLAKA 322

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.5 bits (218), Expect = 3e-20
 Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
           Q    +T+E    F  A FDGI+G+ +  +A   ++PV+DNM+ + LV++++FS +++R+
Sbjct: 101 QTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN 160

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVD 172
                   +  G +DP ++ G   +VPVT + YWQF +  + I       CEGGC AI+D
Sbjct: 161 GQ---ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGV-VVACEGGCQAILD 216

Query: 173 SGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIW 214
           +GTS L GP+  +  I  AIG       E  +       +  
Sbjct: 217 TGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPT 258

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score = 88.1 bits (217), Expect = 4e-20
 Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 13/182 (7%)

Query: 36  NWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVP-VWDNM 94
                T     + I   QV  +               GI+G+G++    G +   V   +
Sbjct: 93  TLYKDTVGFGGVSIKN-QVLADVDSTSI-------DQGILGVGYKTNEAGGSYDNVPVTL 144

Query: 95  VEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDIL 154
            +QG++++  +S +LN    A   G+I+FGGVD   + G    +PVT     +  LG + 
Sbjct: 145 KKQGVIAKNAYSLYLNSPDAA--TGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVE 202

Query: 155 IGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIW 214
           +  ++  +       ++DSGT++      +  +I  A  G+    +          +L  
Sbjct: 203 VSGKT--INTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSG 260

Query: 215 DL 216
           D+
Sbjct: 261 DV 262

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score = 73.0 bits (178), Expect = 6e-15
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKI-FNLSPEQYILKTGEGIA 341
           ++++   N       N      +DC+      +V F        ++   ++         
Sbjct: 232 DQIIKAFNGKLTQDSNGNSFYEVDCN---LSGDVVFNFSKNAKISVPASEFAASLQGD-- 286

Query: 342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
                 +    L        ILGD F+   + V+D     I  A+ 
Sbjct: 287 --DGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLAQV 330

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score = 88.1 bits (217), Expect = 4e-20
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
             + + +     +  N  G   I CD       + F+I    F +SP+  + +  +G   
Sbjct: 228 NNIAASVARAYGASDNGDGTYTISCDTSA-FKPLVFSINGASFQVSPDSLVFEEFQG--- 283

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
            CI+GF             I+GD F+   + VF+ G   +  A  A
Sbjct: 284 QCIAGFG-----YGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score = 83.8 bits (206), Expect = 9e-19
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 65  TFLLARFDGIIGLGFREIAVGDAVP-VWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVF 123
           +F     DG++GLGF  I     V    DN++ QGL+S  +F  +L +  +   GGE +F
Sbjct: 113 SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNG-GGGEYIF 171

Query: 124 GGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT 182
           GG D   FKG  T VP+   +G+W   +    +G  +          I+D+GT+LL  P 
Sbjct: 172 GGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTST---VASSFDGILDTGTTLLILPN 228

Query: 183 PVVTEINHAIGG 194
            +   +  A G 
Sbjct: 229 NIAASVARAYGA 240

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 88.0 bits (217), Expect = 4e-20
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 71  FDGIIGLGFREIAVGDAV--PVWDNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDP 128
             GI+G+GF     G  +   V   + +QG++++  +S +LN +  +   G+I+FGGVD 
Sbjct: 120 DQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDAS--TGKIIFGGVDN 177

Query: 129 KHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEI 188
             + G  T +PVT     +  LG I     S          ++DSGT++         + 
Sbjct: 178 AKYTGTLTALPVTSSVELRVHLGSINFDGTS---VSTNADVVLDSGTTITYFSQSTADKF 234

Query: 189 NHAIGGEGVVSAECKLVVSQY 209
              +G       E   + S  
Sbjct: 235 ARIVGATWDSRNEIYRLPSCD 255

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 71.9 bits (175), Expect = 2e-14
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 283 EKVLSYINELCDSLPNPMGE-SIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA 341
           +        +  +  +   E   +    +      +F  G K   +   + ILK  +   
Sbjct: 228 QSTADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFDQGVK-ITVPLSELILKDSDS-- 284

Query: 342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
            +C  G         R    ILGD F+   + V+D     I  A+ 
Sbjct: 285 SICYFGIS-------RNDANILGDNFLRRAYIVYDLDDKTISLAQV 323

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score = 87.3 bits (215), Expect = 9e-20
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 283 EKVLSYINELCDSLP-NPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG---- 337
               +   +   ++  N  G   +   +   + ++ FTIG + F L+    I        
Sbjct: 222 SDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTA 281

Query: 338 -EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 387
             G A                G  +I G  F+  +++V+D+   R+G A  
Sbjct: 282 IGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATT 332

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score = 86.9 bits (214), Expect = 1e-19
 Identities = 38/155 (24%), Positives = 58/155 (37%), Gaps = 20/155 (12%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVP--------VWDNMVEQGLVSEEV 104
           Q    A+R+          DGI+G+G  ++ VG   P        V DN+  QG +   +
Sbjct: 87  QSIGVASRDSGFDG----VDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNL 142

Query: 105 FSFWLNRDP-DAEEGGEIVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQS 159
            +        ++   GE+ FG  D   + G  TY P+T       YW          + S
Sbjct: 143 LAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTS 202

Query: 160 TGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 194
                   A IVD+GT+L    +    +   A G 
Sbjct: 203 ---ILSSTAGIVDTGTTLTLIASDAFAKYKKATGA 234

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 84.3 bits (207), Expect = 1e-18
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 6/129 (4%)

Query: 266 EMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM-----GESIIDCDRIPTMPNVSFTI 320
                 + +   +    +               P       +++ +      +PNV   +
Sbjct: 245 PDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGL 304

Query: 321 -GDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGK 379
            G   + ++ +  ++   +G A V             R P  ILG   M  +   FD  K
Sbjct: 305 DGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEK 364

Query: 380 LRIGFAEAA 388
            R+GF+   
Sbjct: 365 KRLGFSRLP 373

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 67.0 bits (162), Expect = 7e-13
 Identities = 26/181 (14%), Positives = 41/181 (22%), Gaps = 23/181 (12%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFSFWLNRD 112
            V         L  L     G+ GL          + +   +     V+     F L   
Sbjct: 119 GVLAACAPSKLLASLPRGSTGVAGLAN------SGLALPAQVASAQKVA---NRFLLCLP 169

Query: 113 PDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKG---YWQFELGDILIGNQSTGV---CEGG 166
                      G V    F     Y P+  KG           I++G+    V       
Sbjct: 170 TGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALAT 229

Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKV 226
              ++ +    +     V   +  A            L             V  + P  V
Sbjct: 230 GGVMLSTRLPYVLLRPDVYRPLMDAFTK--------ALAAQHANGAPVARAVEAVAPFGV 281

Query: 227 C 227
           C
Sbjct: 282 C 282

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 83.5 bits (205), Expect = 2e-18
 Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVE-QGLVSEEVFSFWLNR 111
           Q    A +  S        DG++GL F  I      P        +  +SE +F+  L  
Sbjct: 100 QAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKH 159

Query: 112 DPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAI 170
           +      G   FG  D   + G  TY  V   +G+W F      IG+ S          I
Sbjct: 160 NA----PGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDS---SSDSITGI 212

Query: 171 VDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSG 220
            D+GT+LL     +V      + G    S++   V      L    +  G
Sbjct: 213 ADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIG 262

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 81.2 bits (199), Expect = 9e-18
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 283 EKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE 342
           + ++    E  +       +         ++P+ S TIGD    +  E            
Sbjct: 224 DSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGN--G 281

Query: 343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
               G              I GDVF+   + VFD+   R+GFA  A
Sbjct: 282 QTFGGIQ----SNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 81.2 bits (199), Expect = 8e-18
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 297 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 356
            +  G  + DC     +P+ S +I      +           G    C+ G         
Sbjct: 239 DSNAGGYVFDCS--TNLPDFSVSISGYTATVPGSLINYGP-SGDGSTCLGGIQ----SNS 291

Query: 357 RGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 388
                I GD+F+   + VFDS   ++GFA  A
Sbjct: 292 GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 12/145 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGLVSEEVFSFWLN 110
           Q    A +  +        DG++GL F  I      +   + + V+  L    +F+  L 
Sbjct: 100 QAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQP-LFAVALK 158

Query: 111 RDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAA 169
                   G   FG +D   + G  TY  V   +G+W F +     G+Q       G + 
Sbjct: 159 HQQ----PGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQ----SGDGFSG 210

Query: 170 IVDSGTSLLAGPTPVVTEINHAIGG 194
           I D+GT+LL     VV++    + G
Sbjct: 211 IADTGTTLLLLDDSVVSQYYSQVSG 235

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 80.0 bits (196), Expect = 3e-17
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 53  QVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAV---PVWDNMVEQGLVSEEVFSFWL 109
           Q    A +  S     +  DG++GL F  +           +DN   +  +   VF+  L
Sbjct: 104 QAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNA--KASLDSPVFTADL 161

Query: 110 NRDPDAEEGGEIVFGGVDPKHFKGKHTYVPV-TKKGYWQFELGDILIGNQSTGVCEGGCA 168
                    G   FG +D   + G  TY  V TK+G+W++      +G+ +         
Sbjct: 162 GYHA----PGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGT--FKSTSID 215

Query: 169 AIVDSGTSLLAGPTPVVTEINHAIGG 194
            I D+GT+LL  P  VV+     + G
Sbjct: 216 GIADTGTTLLYLPATVVSAYWAQVSG 241

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 76.9 bits (188), Expect = 3e-16
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 297 PNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 356
            + +G  +  C    T+P+ +F +G     +  +          +  C  G         
Sbjct: 245 SSSVGGYVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQ----SSA 298

Query: 357 RGPLWILGDVFMGVYHTVFDSG-KLRIGFA 385
              + I GDV +     VF+      +GFA
Sbjct: 299 GIGINIFGDVALKAAFVVFNGATTPTLGFA 328

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Length = 77

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

 Score = 58.9 bits (142), Expect = 6e-12
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 162 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDL 216
           +C   C  ++++  +LL        ++   I        G ++  C  V+    D +  L
Sbjct: 4   LCNL-CTGLINTLENLLTTKG--ADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQL 60

Query: 217 LVSGLLPEKVCQQIGLC 233
           +   +    +C +I  C
Sbjct: 61  IEDKVDANAICAKIHAC 77

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Length = 77

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPM 300
             +C+ C   +  ++  L   +  +KV  YI+ LC+     +
Sbjct: 2   EILCNLCTGLINTLE-NLLTTKGADKVKDYISSLCNKASGFI 42

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 163 CEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDLL 217
           CE  C  +V   T L+        EI  A           +S EC+ VV  YG  I  +L
Sbjct: 4   CEV-CEFLVKEVTKLIDNNK-TEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSIL 61

Query: 218 VSGLLPEKVCQQIGLCA 234
           +  + PE VC  + LC+
Sbjct: 62  LEEVSPELVCSMLHLCS 78

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDC 307
           C  CE  V  V   +   +T++++L   +++C  LP  + E   + 
Sbjct: 4   CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEV 49

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 55.4 bits (133), Expect = 9e-11
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 162 VCEGGCAAIVDSGTSLLAGP---TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLV 218
            CE  C  I+     ++        V    +       ++   CK ++  +   I   ++
Sbjct: 3   FCES-CRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDIL 61

Query: 219 SGLLPEKVCQQIGLC 233
           +G  P+ +C  I +C
Sbjct: 62  TGKKPQAICVDIKIC 76

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 7/42 (16%), Positives = 19/42 (45%)

Query: 261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGE 302
            C +C   +  +++ +  +  ++ V    +++CD L    G 
Sbjct: 3   FCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGL 44

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 162 VCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDL 216
           VC+  C  +V    + +   +  V  +   +  E       ++  CK  +SQY ++   +
Sbjct: 3   VCQD-CIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQM 61

Query: 217 LVSGLLPEKVCQQIGLC 233
           +   + P+++C  +G C
Sbjct: 62  M-MHMQPKEICALVGFC 77

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 261 VCSACEMAVVWVQNQLKQKQTKEKVL-SYINELCDSLPNPM 300
           VC  C   V  +Q  ++   T  + L  ++ E CD L   M
Sbjct: 3   VCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGM 43

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 167 CAAIVDSGTSLLAGPTPVVTEINHAIGGE-----GVVSAECKLVVSQYGDLIWDLLVSGL 221
           C  IV     ++  PT     +++A               C+  + +Y   +   LV+G 
Sbjct: 7   CLTIVQKLKKMVDKPT--QRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGE 64

Query: 222 LPEKVCQQI 230
             +++C+ +
Sbjct: 65  TAQQICEDL 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	100.0
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	100.0
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	100.0
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	100.0
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	100.0
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	100.0
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	100.0
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	100.0
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	100.0
d1qdma2	337	Plant acid proteinase, phytepsin {Barley (Hordeum	100.0
g1b5f.1	326	Plant acid proteinase, phytepsin {Cynara carduncul	100.0
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	100.0
d1eaga_	342	Acid protease {Yeast (Candida albicans) [TaxId: 54	100.0
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	100.0
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	100.0
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	100.0
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	99.98
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	99.96
d1qdma1	104	(Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4	99.66
d1nkla_	78	NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}	97.18
d1of9a_	77	Ameobapore A {Entamoeba histolytica [TaxId: 5759]}	97.08
d2gtga1	78	Saposin C {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1n69a_	78	Saposin B {Human (Homo sapiens) [TaxId: 9606]}	96.72
d2gtga1	78	Saposin C {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1of9a_	77	Ameobapore A {Entamoeba histolytica [TaxId: 5759]}	96.6
d1nkla_	78	NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}	96.14
d1n69a_	78	Saposin B {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1l9la_	74	Granulysin, NKG5 protein {Human (Homo sapiens) [Ta	95.9
d1l9la_	74	Granulysin, NKG5 protein {Human (Homo sapiens) [Ta	95.59

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.6e-42  Score=339.16  Aligned_cols=255  Identities=39%  Similarity=0.731  Sum_probs=226.2

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .+.|+.+.++|.++.|+++++   +++++++.|++++...+..+.....+||+|||++..+.....+++++|+++|+|++
T Consensus       116 ~~~Yg~Gs~~G~~~~d~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~  192 (370)
T d3psga_         116 SITYGTGSMTGILGYDTVQVG---GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQ  192 (370)
T ss_dssp             EEESSSCEEEEEEEEEEEEET---TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSS
T ss_pred             EEEeCCceEEEEEEEEEEeee---ceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhccccc
Confidence            577888899999999999999   89999999999998777667777889999999999888888899999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      ++||+|+.+..+  .+|.|+|||+|++++.++++|+|+.+.+||.+.++++.++++.+. ...+..+++||||+++++|+
T Consensus       193 ~~fs~~l~~~~~--~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~i~v~g~~~~-~~~~~~aiiDSGTs~~~lp~  269 (370)
T d3psga_         193 DLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPT  269 (370)
T ss_dssp             SEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEH
T ss_pred             ceeEEEeecCCC--CCceEecCCcCchhcccceeEEeecccceEEEEEeeEEeCCeEEe-cCCCccEEEecCCceEeCCH
Confidence            999999988653  479999999999999999999999999999999999999998775 34677899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.+++.+..                                                                  
T Consensus       270 ~~~~~i~~~l~~~~------------------------------------------------------------------  283 (370)
T d3psga_         270 SAIANIQSDIGASE------------------------------------------------------------------  283 (370)
T ss_dssp             HHHHHHHHHTTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCee------------------------------------------------------------------
Confidence            99999999996541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.|.++|...+.+|+|+|+|+|..++|+|++|+++..    .
T Consensus       284 -----------------------------------~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~~~~----~  324 (370)
T d3psga_         284 -----------------------------------NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDD----D  324 (370)
T ss_dssp             -----------------------------------CTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECS----S
T ss_pred             -----------------------------------ecCCcEEEeccccCCCceEEEEECCEEEEEChHHeEEEcC----C
Confidence                                               1245688999888889999999999999999999998743    4


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|+..|...+.+...++.||||++|||++|+|||++++||||||+|
T Consensus       325 ~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         325 SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             eEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            6999999888776677889999999999999999999999999986

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=100.00  E-value=3.2e-40  Score=316.49  Aligned_cols=256  Identities=34%  Similarity=0.640  Sum_probs=227.3

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .+.|..+.+.|.++.|+++++   +.+++++.|++++.+.+..|.....+|++|||++..+.....+++.+|..+++|++
T Consensus        73 ~~~y~~gs~~G~~~~D~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Glg~~~~~~~~~~~~~~~l~~~~~i~~  149 (329)
T d1dpja_          73 AIQYGTGSLEGYISQDTLSIG---DLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDE  149 (329)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSS
T ss_pred             EEEccCceEEEEEEEEEEEec---ceEEeeEEEEEEeeccCccccccccccccccccCccccccCCchhhhHhhccCccc
Confidence            567888889999999999999   89999999999998877777778889999999998887777888999999999999


Q ss_pred             ceEEEEecCCC-CCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccC
Q 016530          103 EVFSFWLNRDP-DAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP  181 (388)
Q Consensus       103 ~~FSl~L~~~~-~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP  181 (388)
                      +.||+||.+.. +....|.|+|||+|++++.++++|+|+....+|.+.+++|.++++.+.  ..+..++|||||+++++|
T Consensus       150 ~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGts~~~lp  227 (329)
T d1dpja_         150 KRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAE--LESHGAAIDTGTSLITLP  227 (329)
T ss_dssp             SEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE--CSSCEEEECTTCSCEEEC
T ss_pred             ceEEEEEEecCCCcCCCCceECCCCchhhccCceeEecccccceeEEEEeeEEECCeEee--eeecccccCcccceeeCC
Confidence            99999998643 234579999999999999999999999999999999999999999876  356789999999999999


Q ss_pred             HHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcc
Q 016530          182 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV  261 (388)
Q Consensus       182 ~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (388)
                      ++++++|.+++++..                                                                 
T Consensus       228 ~~~~~~l~~~~~~~~-----------------------------------------------------------------  242 (329)
T d1dpja_         228 SGLAEMINAEIGAKK-----------------------------------------------------------------  242 (329)
T ss_dssp             HHHHHHHHHHHTCEE-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCcc-----------------------------------------------------------------
Confidence            999999999996531                                                                 


Q ss_pred             cchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcc
Q 016530          262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA  341 (388)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~  341 (388)
                                                          ...+.|.++|+...++|+|+|+|+|.+++|+|++|+.+..    
T Consensus       243 ------------------------------------~~~~~~~~~c~~~~~~P~i~f~f~g~~~~l~p~~y~~~~~----  282 (329)
T d1dpja_         243 ------------------------------------GWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVS----  282 (329)
T ss_dssp             ------------------------------------CTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEEET----
T ss_pred             ------------------------------------ccceeEEEeccccCccceEEEEECCEEEEECHHHeEEecC----
Confidence                                                1234588999987889999999999999999999998753    


Q ss_pred             cceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       342 ~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      +.|+..|...+.+...++.||||++|||++|+|||++++|||||||.
T Consensus       283 ~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~  329 (329)
T d1dpja_         283 GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI  329 (329)
T ss_dssp             TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CcEEEEEEECccCCCCCCcEEEcHHhhCcEEEEEECCCCEEEEEEeC
Confidence            47999999887766667889999999999999999999999999984

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-39  Score=313.91  Aligned_cols=259  Identities=35%  Similarity=0.712  Sum_probs=221.6

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .+.|..+-+.|.++.|+++++   +.++.++.++.. ......|.....+|++|||+.........+++++|++++.+++
T Consensus        77 ~~~Y~~gs~~G~~~~D~v~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~Gi~glg~~~~~~~~~~~~~~~l~~~~~i~~  152 (335)
T d1smra_          77 TIHYGSGRVKGFLSQDSVTVG---GITVTQTFGEVT-QLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKE  152 (335)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEE-ECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCBSS
T ss_pred             EEEecCceEEEEEEEEEEEec---ccccccEEEEEE-ecccccccccccccccccccccccccCCCchHHHHHHhcCccc
Confidence            577888889999999999999   788876665544 4445567777889999999998877778889999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      +.||+||.+.+. ...|.|+||++|++++.++++|+|+.+..+|.+.+.+|.+++..+. ...+..++|||||+++++|+
T Consensus       153 ~~fs~~l~~~~~-~~~g~l~~G~~d~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~-~~~~~~~iiDSGtt~~~lp~  230 (335)
T d1smra_         153 KVFSVYYNRGPH-LLGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLL-CEEGCEVVVDTGSSFISAPT  230 (335)
T ss_dssp             SEEEEEECCSSS-SCCEEEEESSCCGGGEEEEEEEEECSBTTTTEEEEEEEEETTSCCB-CTTCEEEEECTTBSSEEECH
T ss_pred             cceeEEeccCCC-ccceeEeccccCcccccCceeeeecccccceEEEEeEEEECCeeEe-ccCCceEEEeCCCCcccCCH
Confidence            999999987643 2579999999999999999999999999999999999999998764 24567899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      ++++++.+++++..                                                                  
T Consensus       231 ~~~~~l~~~~~~~~------------------------------------------------------------------  244 (335)
T d1smra_         231 SSLKLIMQALGAKE------------------------------------------------------------------  244 (335)
T ss_dssp             HHHHHHHHHHTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCee------------------------------------------------------------------
Confidence            99999999996541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         .....+.++|...+.+|+|+|.|+|..+.|+|++|+.+..+....
T Consensus       245 -----------------------------------~~~~~~~~~c~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~  289 (335)
T d1smra_         245 -----------------------------------KRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDK  289 (335)
T ss_dssp             -----------------------------------EETTEEEEEGGGGGGSCCEEEEETTEEEEECHHHHBTT----CCC
T ss_pred             -----------------------------------ccCCceeecccccCCCCccEEEECCeEEEEChHHeEEEeccCCCC
Confidence                                               112336788987788999999999999999999999876666678


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..+.+...++.||||++|||++|+|||++++|||||+|+
T Consensus       290 ~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~ak  335 (335)
T d1smra_         290 LCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALAR  335 (335)
T ss_dssp             EEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEEecCcCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEEcC
Confidence            8999999888766667889999999999999999999999999986

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=100.00  E-value=9.5e-39  Score=307.88  Aligned_cols=248  Identities=28%  Similarity=0.487  Sum_probs=212.9

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc-CCCCchhhhhhhcCCC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV-GDAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~-~~~~~~~~~L~~qg~i  100 (388)
                      .++|..+ .+.|.++.|+++++   +++++++.|+++..... .+...+.+|++|||++.++. ....+++.+|+++|+|
T Consensus        74 ~~~y~~g~~~~G~~~~D~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~GilGlg~~~~~~~~~~~~~~~~l~~~g~i  149 (325)
T d2apra_          74 SISYGDGSSASGILAKDNVNLG---GLLIKGQTIELAKREAA-SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLI  149 (325)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECH-HHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSC
T ss_pred             EEEeCCCCeEEEEEEeeeEEee---eeeccCcceeeeeeecc-cccccccCcccccccccccccccCCcchhHHHhhccc
Confidence            4566665 58999999999999   89999999999988643 35556789999999988775 3467899999999999


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcc
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLA  179 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~  179 (388)
                      ++++||+||.+..+ ...|.|+|||+|++++.++++|+|+. +.+||.+.++++.+++..+.   .+..++|||||++++
T Consensus       150 ~~~~fs~~l~~~~~-~~~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~v~l~~i~i~~~~~~---~~~~~iiDSGt~~~~  225 (325)
T d2apra_         150 SRPIFGVYLGKAKN-GGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVA---SSFDGILDTGTTLLI  225 (325)
T ss_dssp             SSSEEEEEECCGGG-TCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETTEEEE---CCEEEEECTTCSSEE
T ss_pred             cceeEEEEeccCCC-CCCeEEEecCCCchhhccceeeEeecCCCceEEEEEeeEEECCEeec---ceeeeeccCCCcccc
Confidence            99999999987542 24799999999999999999999986 56899999999999999874   667899999999999


Q ss_pred             cCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCC
Q 016530          180 GPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS  259 (388)
Q Consensus       180 lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (388)
                      +|.+++++|.+.+++..                                                               
T Consensus       226 lp~~~~~~l~~~~~~~~---------------------------------------------------------------  242 (325)
T d2apra_         226 LPNNIAASVARAYGASD---------------------------------------------------------------  242 (325)
T ss_dssp             EEHHHHHHHHHHHTCEE---------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHhCCcc---------------------------------------------------------------
Confidence            99999999999986531                                                               


Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEG  339 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~  339 (388)
                                                            ...+.|.++|+. ..+|+|+|+|+|.+++|+|++|+++... 
T Consensus       243 --------------------------------------~~~~~~~~~C~~-~~~p~i~f~f~g~~~~i~~~~y~~~~~~-  282 (325)
T d2apra_         243 --------------------------------------NGDGTYTISCDT-SAFKPLVFSINGASFQVSPDSLVFEEFQ-  282 (325)
T ss_dssp             --------------------------------------CSSSCEEECSCG-GGCCCEEEEETTEEEEECGGGGEEEEET-
T ss_pred             --------------------------------------cCCCceeecccC-CCCCcEEEEECCEEEEEChHHeEEecCC-
Confidence                                                  123568899984 4689999999999999999999987643 


Q ss_pred             cccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          340 IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       340 ~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                        +.|++.|+..+     .+.+|||++|||++|+|||++++||||||+|
T Consensus       283 --~~C~~~i~~~~-----~~~~iLG~~flr~~y~vfD~~~~~IGfAp~a  324 (325)
T d2apra_         283 --GQCIAGFGYGN-----WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA  324 (325)
T ss_dssp             --TEEEESEEEES-----SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             --CEEEEEEccCC-----CCCEEECHHHhCcEEEEEECCCCEEeEEEcC
Confidence              57999998653     3568999999999999999999999999997

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=100.00  E-value=9.8e-39  Score=305.49  Aligned_cols=253  Identities=34%  Similarity=0.588  Sum_probs=222.1

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .+.|..+-+.|.++.|.++++   +.++.++.|++++.+.+..+.....+|++|||++..+.....+++++++++++|++
T Consensus        72 ~~~y~~g~~~G~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~gLg~~~~~~~~~~~~~~~~~~~~~i~~  148 (324)
T d1am5a_          72 DLTYGTGGMRGILGQDTVSVG---GGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEK  148 (324)
T ss_dssp             EEECSSCEEEEEEEEEEEESS---SSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSS
T ss_pred             EEEecCCceEEEEEEeecccC---cccceeEEEEEeeeeccceeecccccccccccCcccccCCCCcHHHHHHhccCccc
Confidence            567888899999999999999   88999999999999887767677889999999998887778889999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      +.||+||.+.+.  .+|.|+|||+|++++.++++|+|+.+.++|.+.++++.++++.+.  ..+..++|||||+++++|+
T Consensus       149 ~~fs~~l~~~~~--~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~--~~~~~~iiDsGts~~~lp~  224 (324)
T d1am5a_         149 DLFSFYLSGGGA--NGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAA--CEGCQAIVDTGTSKIVAPV  224 (324)
T ss_dssp             SEEEEECCSTTC--SCEEEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECC--CCCEEEEECTTCSSEEECT
T ss_pred             ceEEEEecCCCC--CCceEEeeccccccccCceEEeeccccceEEEEEeeEEeCCcccc--cCCcceeeccCcccccCCH
Confidence            999999987643  479999999999999999999999999999999999999999875  4677899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      +++++|.++++...                                                                  
T Consensus       225 ~~~~~l~~~i~~~~------------------------------------------------------------------  238 (324)
T d1am5a_         225 SALANIMKDIGASE------------------------------------------------------------------  238 (324)
T ss_dssp             TTHHHHHHHHTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCcc------------------------------------------------------------------
Confidence            99999999996541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                          ..+.+...|....++|+|+|+|+|..+.|+|++|+...    ..
T Consensus       239 ------------------------------------~~~~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~----~~  278 (324)
T d1am5a_         239 ------------------------------------NQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD----QA  278 (324)
T ss_dssp             ------------------------------------CCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES----SS
T ss_pred             ------------------------------------cCCcccccccccccCCceEEEECCEEEEECHHHhEecC----CC
Confidence                                                11223445555568999999999999999999998653    35


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|...|...+.+....+.+|||++|||++|+|||++++||||||||
T Consensus       279 ~c~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~igfA~aa  324 (324)
T d1am5a_         279 FCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA  324 (324)
T ss_dssp             CEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred             eEEEEEEecCcCCCCCCCEEECHHhhcCEEEEEECCCCEEEEEEcC
Confidence            7999999887766666789999999999999999999999999997

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=305.62  Aligned_cols=259  Identities=35%  Similarity=0.719  Sum_probs=226.2

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .|.+..+.+.|.++.|+++++   +.+++++.+++.... +..|.....+|++|||+++.......+++.+|++|+.|++
T Consensus        77 ~~~~~~g~~~G~~~~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~GilGl~~~~~~~~~~~~~~~~l~~~~~i~~  152 (337)
T d1hrna_          77 TLRYSTGTVSGFLSQDIITVG---GITVTQMFGEVTEMP-ALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKE  152 (337)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEECC-HHHHTTCSSCEEEECSCGGGCGGGCCCHHHHHHTTTCBSS
T ss_pred             EEEecCcEEEEEEEEeeeeec---CceeeeEEEEEEecc-ccccccccccccccccccccccCCCCcchhhHhhcCCCcc
Confidence            567888889999999999999   899998887776654 4556777889999999988777778899999999999999


Q ss_pred             ceEEEEecCCCC--CCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          103 EVFSFWLNRDPD--AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       103 ~~FSl~L~~~~~--~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      +.|+++|.+...  ....|.|+||++|++++.+++.|+|+...++|.+.+.++.+++.... ......++|||||+++++
T Consensus       153 ~~f~~~l~~~~~~~~~~~g~l~~G~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~iiDSGtt~~~l  231 (337)
T d1hrna_         153 DVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISG  231 (337)
T ss_dssp             SEEEEEECCCCC---CCCEEEEETSCCGGGEEEEEEEEEBSSTTSCEEEECEEEETTEEEE-STTCEEEEECTTCSSEEE
T ss_pred             ceeeEEeccccCCCcccCceEEccccChhhcCCceeeeeeeccceeEEeecceeccccccc-cccCcceEEeCCCcceec
Confidence            999999998642  23579999999999999999999999999999999999999988754 345678999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |++++++|++++++..                                                                
T Consensus       232 p~~~~~~l~~~~~~~~----------------------------------------------------------------  247 (337)
T d1hrna_         232 STSSIEKLMEALGAKK----------------------------------------------------------------  247 (337)
T ss_dssp             CHHHHHHHHHHHTCEE----------------------------------------------------------------
T ss_pred             cHHHHHHHHHHhCCcc----------------------------------------------------------------
Confidence            9999999999996541                                                                


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCc
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI  340 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~  340 (388)
                                                            ..+.|.++|.....+|+|+|+|+|..++|+|++|+++..+..
T Consensus       248 --------------------------------------~~~~~~~~c~~~~~~P~l~f~f~g~~~~l~p~~yl~~~~~~~  289 (337)
T d1hrna_         248 --------------------------------------RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSS  289 (337)
T ss_dssp             --------------------------------------CSSCEEEETTTGGGCCCEEEEETTEEEEECHHHHBCCCCCCT
T ss_pred             --------------------------------------cccceeeeccccCCCCceeEEECCEEEEEChHHeEEEecCCC
Confidence                                                  123478999988889999999999999999999998776666


Q ss_pred             ccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          341 AEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       341 ~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ...|++.|+..+.+...++.||||++|||++|+|||++++|||||+|+
T Consensus       290 ~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~IGfA~ak  337 (337)
T d1hrna_         290 KKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  337 (337)
T ss_dssp             TSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEEcCCcCCCCCCCEEECHHhhCCEEEEEECCCCEEEEEEcC
Confidence            678999999988776777889999999999999999999999999986

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=100.00  E-value=8.1e-38  Score=305.92  Aligned_cols=252  Identities=25%  Similarity=0.457  Sum_probs=215.6

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCC-ccccccCccEEEeeccCccccCCCCchhhhhhhcCCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGS-LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVS  101 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~-~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~  101 (388)
                      .+.|..+.++|.++.|+|+++   +++++++.|+.+..... ..+.....+|++||+++........+++.++++++.++
T Consensus       120 ~~~y~~G~~~G~~~~D~v~ig---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~  196 (373)
T d1miqa_         120 DITYGSGTVKGFFSKDLVTLG---HLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKID  196 (373)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSS
T ss_pred             EEEeCCcEEEEEEEEEEEEEc---CcceEeeEEEEEeccccCccccccccccccccccccccCCCccceehhhhhhhccc
Confidence            678899999999999999999   89999999988876432 24556678999999999988888899999999999999


Q ss_pred             cceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccC
Q 016530          102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP  181 (388)
Q Consensus       102 ~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP  181 (388)
                      +++||+|+.+.+.  ..|.++|||+|++++.+++.|+|+.+.+||.+.++ +.+++...    ....+++||||+++++|
T Consensus       197 ~~~fs~~~~~~~~--~~g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~i~l~-~~~~~~~~----~~~~~iiDTGTs~~~lP  269 (373)
T d1miqa_         197 NALFTFYLPVHDV--HAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----EKANVIVDSGTTTITAP  269 (373)
T ss_dssp             SSEEEEECCTTCT--TEEEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEE----EEEEEEECTTBSSEEEC
T ss_pred             cceEEEEeccCCC--CCceeeccCCCchhccceeeEEeccccceEEEEEE-EEECcEec----CCcceEeccCCceeccC
Confidence            9999999988643  47899999999999999999999999999999985 56666654    35579999999999999


Q ss_pred             HHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcc
Q 016530          182 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV  261 (388)
Q Consensus       182 ~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (388)
                      .+++++|.+++++..                                                                 
T Consensus       270 ~~~~~~l~~~i~~~~-----------------------------------------------------------------  284 (373)
T d1miqa_         270 SEFLNKFFANLNVIK-----------------------------------------------------------------  284 (373)
T ss_dssp             HHHHHHHHHHHTCEE-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCee-----------------------------------------------------------------
Confidence            999999999997541                                                                 


Q ss_pred             cchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcc
Q 016530          262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA  341 (388)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~  341 (388)
                                                         ....+.|..+|. ..++|+|+|+|+|..++|+|++|+.+..+...
T Consensus       285 -----------------------------------~~~~~~~~~~~~-~~~~P~itf~f~g~~~~l~p~~y~~~~~~~~~  328 (373)
T d1miqa_         285 -----------------------------------VPFLPFYVTTCD-NKEMPTLEFKSANNTYTLEPEYYMNPILEVDD  328 (373)
T ss_dssp             -----------------------------------CTTSSCEEEETT-CTTCCCEEEECSSCEEEECGGGSEEESSSSSC
T ss_pred             -----------------------------------ccCCCeeEeccc-cCCCceEEEEECCEEEEECHHHeeEEEEeCCC
Confidence                                               011233444554 56899999999999999999999998766667


Q ss_pred             cceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       342 ~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ..|++.|++.+.   .++.||||++|||++|+|||++++|||||+++
T Consensus       329 ~~C~~~~~~~~~---~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~ak  372 (373)
T d1miqa_         329 TLCMITMLPVDI---DSNTFILGDPFMRKYFTVFDYDKESVGFAIAK  372 (373)
T ss_dssp             SEEEESEEECCS---SSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEEECCC---CCCCEEEcHHhhCcEEEEEECCCCEEEEEEcC
Confidence            889999998753   23679999999999999999999999999986

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

Probab=100.00  E-value=6e-38  Score=303.95  Aligned_cols=248  Identities=21%  Similarity=0.305  Sum_probs=205.9

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCC---CCchhhhhhhcC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGD---AVPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~---~~~~~~~L~~qg   98 (388)
                      .++|+.+ .+.|.++.|+|+++   +.++++|.|+++....+..+.....+||||||++..+...   ..++++++  ++
T Consensus        76 ~~~Y~~G~~~~G~~~~D~v~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~GilGlg~~~~~~~~~~~~~~~~~~~--~~  150 (330)
T d1oewa_          76 SISYGDGSSSSGDVYTDTVSVG---GLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNA--KA  150 (330)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHH--TT
T ss_pred             EEEeCCCCcEEEEEEEEEEEee---cceecceEEEEeeeccccccccCCcccccccccCcccccCccccccHHHhh--hh
Confidence            6778776 68999999999999   8999999999999877655666788999999998766432   23444444  68


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                      .|+++.||+++.+..    .|.|+|||+|++++.|++.|+|+. +..+|.+.+++|.++++.+.  ..+..++|||||++
T Consensus       151 ~i~~~~fs~~l~~~~----~g~l~~Gg~d~~~~~g~~~~~~~~~~~~~~~v~l~~i~v~~~~~~--~~~~~~iiDSGts~  224 (330)
T d1oewa_         151 SLDSPVFTADLGYHA----PGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFK--STSIDGIADTGTTL  224 (330)
T ss_dssp             TSSSSEEEEECCSSS----CEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCE--EEEEEEEECTTCCS
T ss_pred             hhcccceeeeccccc----CCceeecccccccccCcceeeeccCCCCceEEEEeEEEEEeeeee--cCCcceeecccccc
Confidence            899999999998863    799999999999999999999986 56799999999999998765  45667999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|.+++++|.+++++..            |                                                
T Consensus       225 ~~lp~~~~~~i~~~~~~~~------------~------------------------------------------------  244 (330)
T d1oewa_         225 LYLPATVVSAYWAQVSGAK------------S------------------------------------------------  244 (330)
T ss_dssp             EEECHHHHHHHHTTSTTCE------------E------------------------------------------------
T ss_pred             ccCCHHHHHHHHHHccCcc------------c------------------------------------------------
Confidence            9999999999998885431            0                                                


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                             ....+.|.++|+.  .+|+|+|+|+|..+.||++.+.....
T Consensus       245 ---------------------------------------~~~~~~~~~~C~~--~~P~i~f~f~g~~~~lp~~~~~~~~~  283 (330)
T d1oewa_         245 ---------------------------------------SSSVGGYVFPCSA--TLPSFTFGVGSARIVIPGDYIDFGPI  283 (330)
T ss_dssp             ---------------------------------------ETTTTEEEEETTC--CCCCEEEEETTEEEEECHHHHEEEES
T ss_pred             ---------------------------------------CcccceEEecccC--CCCcEEEEECCEEEecCHHHeeEEEe
Confidence                                                   1234668999984  79999999999999998877776655


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeC-CCCeEEEEe
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDS-GKLRIGFAE  386 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~-~~~rIGfA~  386 (388)
                      ......|+++|+..+    ..+.||||++|||++|+|||. ++.|||||.
T Consensus       284 ~~~~~~C~~~i~~~~----~~~~~ILG~~flr~~y~vfD~~~~~~IGfA~  329 (330)
T d1oewa_         284 STGSSSCFGGIQSSA----GIGINIFGDVALKAAFVVFNGATTPTLGFAS  329 (330)
T ss_dssp             STTCSEEEESEEEST----TTSSEEECHHHHTTEEEEEECSSSCEEEEEE
T ss_pred             cCCCCEEEEEEECCC----CCCCEEECHHHhCCEEEEEECCCCCEEEEec
Confidence            555678999998542    235789999999999999998 667999996

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=100.00  E-value=3.3e-37  Score=299.47  Aligned_cols=240  Identities=21%  Similarity=0.279  Sum_probs=204.8

Q ss_pred             eEEeee-eEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc--CCCCchhhhhhhcCC
Q 016530           23 RIRCVL-VLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV--GDAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~~-~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~--~~~~~~~~~L~~qg~   99 (388)
                      .+.|+. +.+.|.++.|+|+++   +++++++.|+++.....       .+|++|||+...+.  ....+++.+|.+||+
T Consensus        81 ~~~Y~~g~~~~G~~~~D~~~~g---~~~~~~~~f~~~~~~~~-------~~GilGlg~~~~~~~~~~~~~~~~~l~~q~~  150 (334)
T d1j71a_          81 SIEYGDLTSSQGSFYKDTVGFG---GISIKNQQFADVTTTSV-------DQGIMGIGFTADEAGYNLYDNVPVTLKKQGI  150 (334)
T ss_dssp             EEEBTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEESS-------SSCEEECSCGGGSSTTCCCCCHHHHHHHTTS
T ss_pred             EEEeCCCceEEEEEEeeEEEEe---eeeccCceeeeeeeecc-------ccCccccccccccccccccchhhHHHHhccc
Confidence            467764 789999999999999   89999999999987642       48999999987664  334678999999999


Q ss_pred             CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcc
Q 016530          100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLA  179 (388)
Q Consensus       100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~  179 (388)
                      |++++||+|+.+...  .+|.|+|||+|++++.|++.|+|+.+..+|.+++.+|++++..+.   .+..++|||||++++
T Consensus       151 i~~~~fs~~l~~~~~--~~g~l~lGg~d~~~~~g~~~~~~~~~~~~~~v~l~~i~v~g~~~~---~~~~aiiDSGt~~~~  225 (334)
T d1j71a_         151 INKNAYSLYLNSEDA--STGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVS---TNADVVLDSGTTITY  225 (334)
T ss_dssp             CSSSEEEEECCCTTC--SEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEE
T ss_pred             cccceEEEEeccCCC--CCceEEecccChhhcccceeEeeeccccceEEeeceEEECCEEec---ccccccccCCCccee
Confidence            999999999987643  479999999999999999999999999999999999999999875   456799999999999


Q ss_pred             cCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCC
Q 016530          180 GPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS  259 (388)
Q Consensus       180 lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (388)
                      +|++++++|++.+++..                                                               
T Consensus       226 lp~~~~~~l~~~~~~~~---------------------------------------------------------------  242 (334)
T d1j71a_         226 FSQSTADKFARIVGATW---------------------------------------------------------------  242 (334)
T ss_dssp             ECHHHHHHHHHHHTCEE---------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHhCCEE---------------------------------------------------------------
Confidence            99999999999996541                                                               


Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeecc
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGE  338 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~~yi~~~~~  338 (388)
                                                           ....+.|.++|..  ..|+++|+|+ |.+++|+|++|+++..+
T Consensus       243 -------------------------------------~~~~~~~~~~~~~--~~p~i~f~f~~g~~~~i~~~~y~~~~~~  283 (334)
T d1j71a_         243 -------------------------------------DSRNEIYRLPSCD--LSGDAVFNFDQGVKITVPLSELILKDSD  283 (334)
T ss_dssp             -------------------------------------ETTTTEEECSSSC--CCSEEEEEESTTCEEEEEGGGGEEECSS
T ss_pred             -------------------------------------cCCCCeeeccccc--cCCCceEEeCCCEEEEEChHHeEEecCC
Confidence                                                 0112346677653  5799999995 79999999999987543


Q ss_pred             CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          339 GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       339 ~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                        ...|+++|++.       +.||||++|||++|++||++++|||||+++
T Consensus       284 --~~~C~~~i~~~-------~~~ILG~~fl~~~y~vfD~~n~~iGfA~~~  324 (334)
T d1j71a_         284 --SSICYFGISRN-------DANILGDNFLRRAYIVYDLDDKTISLAQVK  324 (334)
T ss_dssp             --SSCEEESEEEC-------TTCEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             --CCEEEEEecCC-------CCcEECHHhhCcEEEEEECCCCEEEEEECC
Confidence              46799988753       468999999999999999999999999874

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=100.00  E-value=2e-36  Score=289.71  Aligned_cols=247  Identities=25%  Similarity=0.325  Sum_probs=204.1

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCC---CchhhhhhhcC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDA---VPVWDNMVEQG   98 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~---~~~~~~L~~qg   98 (388)
                      .+.|..+ .+.|.++.|+++++   +.+++++.|+++....+..+....+||++|||++..+....   ..+...+.  +
T Consensus        72 ~i~Y~~G~~~~G~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~~~--~  146 (323)
T d1izea_          72 SISYGDGSSASGDVYKDKVTVG---GVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVK--S  146 (323)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHG--G
T ss_pred             EEEcCCcceeeeEEEeeeeecc---CccccceEEEEEEeccCccccccccccccccccccccccCcccchHHHHhhh--h
Confidence            4666665 68999999999999   89999999999998776666677889999999987775332   22433343  4


Q ss_pred             CCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeec-ccceeEEEEccEEEcCeeeceecCCceEEEcCCCcC
Q 016530           99 LVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVT-KKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSL  177 (388)
Q Consensus        99 ~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~-~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~  177 (388)
                      .+++++||+++.+..    +|.|+|||+|++++.|++.|.|+. ...+|.+.+.+++++++...   ....++|||||++
T Consensus       147 ~~~~~~fs~~l~~~~----~g~l~~Gg~d~~~~~g~~~~~~~~~~~~~~~v~~~~i~v~~~~~~---~~~~~ivDSGts~  219 (323)
T d1izea_         147 SLSEPIFAVALKHNA----PGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSS---DSITGIADTGTTL  219 (323)
T ss_dssp             GSSSSEEEEECCTTS----CEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETTEEEC---CCEEEEECTTCCS
T ss_pred             hcCcceEEEEccCCC----CeeEEccccCcccccCcceeeeecCCCceEEEEeceEEECCCccc---cCceEEeccCCcc
Confidence            588999999998763    799999999999999999999996 46789999999999998764   5678999999999


Q ss_pred             cccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCC
Q 016530          178 LAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAG  257 (388)
Q Consensus       178 i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  257 (388)
                      +++|.++++++.+.+++..                                                             
T Consensus       220 ~~lp~~~~~~~~~~~~~~~-------------------------------------------------------------  238 (323)
T d1izea_         220 LLLDDSIVDAYYEQVNGAS-------------------------------------------------------------  238 (323)
T ss_dssp             EEECHHHHHHHHTTSTTCE-------------------------------------------------------------
T ss_pred             ccCCHHHHHHHHHHcCCcc-------------------------------------------------------------
Confidence            9999999999988886431                                                             


Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTG  337 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~  337 (388)
                                                            .+...+.+.++|.  .++|+++|+|+|..+.||+++|+.+..
T Consensus       239 --------------------------------------~~~~~~~~~~~~~--~~~p~i~f~f~g~~~~ip~~~~~~~~~  278 (323)
T d1izea_         239 --------------------------------------YDSSQGGYVFPSS--ASLPDFSVTIGDYTATVPGEYISFADV  278 (323)
T ss_dssp             --------------------------------------EETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEEC
T ss_pred             --------------------------------------ccCCCCcEEeecc--cCCceEEEEECCEEEEcChHHEEEEeC
Confidence                                                  0122345677886  479999999999999999999987654


Q ss_pred             cCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          338 EGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       338 ~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .  ...|++.|...    ...+.||||++|||++|+|||++++|||||++|
T Consensus       279 ~--~~~C~~~i~~~----~~~~~~iLG~~flr~~y~vfD~~~~~IGfA~~a  323 (323)
T d1izea_         279 G--NGQTFGGIQSN----SGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA  323 (323)
T ss_dssp             S--TTEEEESEEEC----TTTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             C--CCEEEEEEECC----CCCCCEEECHHHhCCEEEEEECCCCEEEEccCC
Confidence            3  36899999754    234679999999999999999999999999987

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.3e-35  Score=282.39  Aligned_cols=262  Identities=65%  Similarity=1.158  Sum_probs=228.8

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .++|..+.+.|.+..|+++++   +..+.++.|+......+........+|++||+++.........++..+..|+.+..
T Consensus        76 ~~~y~~gs~~G~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  152 (337)
T d1qdma2          76 AIQYGTGSIAGYFSEDSVTVG---DLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSD  152 (337)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSS
T ss_pred             EEecCCceEEEEEEeeeEEEE---eeccccceeeeeccccceeecccccccccccccCccccCCCccchhhhhhhhccCC
Confidence            667888899999999999999   89999999999988766655566779999999988877777788899999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      +.|++++....+....|.++|||+|++++.+.+.|+|.....+|.+.+.++.+++....+...+..+++||||+++++|.
T Consensus       153 ~~~s~~~~~~~~~~~~g~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~iiDtgt~~~~l~~  232 (337)
T d1qdma2         153 PVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPT  232 (337)
T ss_dssp             SEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECH
T ss_pred             CeEEEEeecCCCcccCcceecCCcCccccccceeeeeeccccceeeccceEEECCeEeeecCCCceEEeeccCcceecch
Confidence            99999999876656789999999999999999999999999999999999999999887767788999999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      ++++++.+++.+..                                                                  
T Consensus       233 ~~~~~~~~~l~~~~------------------------------------------------------------------  246 (337)
T d1qdma2         233 AIITEINEKIGAAG------------------------------------------------------------------  246 (337)
T ss_dssp             HHHHHHHHHHTCCC------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcccc------------------------------------------------------------------
Confidence            99999999996541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         .....+.++|......|+++|+|+|..+.|+|++|+.+..++...
T Consensus       247 -----------------------------------~~~~~~~~~~~~~~~~p~itf~f~g~~~~l~~~~~~~~~~~~~~~  291 (337)
T d1qdma2         247 -----------------------------------SPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAA  291 (337)
T ss_dssp             -----------------------------------CSSSCCEECGGGGTTCCCEEEEETTEEEEECHHHHEEECSCGGGC
T ss_pred             -----------------------------------ccCCcccccccccCCCCceEEEECCEEEEEChHHeEEEeccCCCC
Confidence                                               011224577877788999999999999999999999987766678


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..+.+...++.||||++|||++|+|||++++||||||||
T Consensus       292 ~C~~~i~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~igfA~aa  337 (337)
T d1qdma2         292 QCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA  337 (337)
T ss_dssp             CEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEEecCcCCCCCCcEEEhHHhhcCEEEEEECCCCEEEEEECC
Confidence            8999999987666667889999999999999999999999999997

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=100.00  E-value=5.6e-36  Score=289.71  Aligned_cols=256  Identities=21%  Similarity=0.307  Sum_probs=204.8

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCcccc--------CCCCchhhhh
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAV--------GDAVPVWDNM   94 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~--------~~~~~~~~~L   94 (388)
                      .|.|+.+-+.|.++.|+|+++   +++++++.||+++...+.    ...+|++|+|+.....        ...++++.+|
T Consensus        60 ~i~Y~~gs~~G~~~~D~~~~~---~~~~~~~~fg~~~~~~~~----~~~~gi~g~g~~~~~~~~~~~~~~~~~~~~~~~l  132 (340)
T d1wkra_          60 SVTYGSGSFSGTEYTDTVTLG---SLTIPKQSIGVASRDSGF----DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNL  132 (340)
T ss_dssp             EEECSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEEESC----TTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHH
T ss_pred             EEEeCCeEEEEEEEEEEEeeC---CeeeccEEEEEEEeccCc----ccccceecccccccccccccCccccCcCchhhhH
Confidence            466777888999999999999   899999999999987542    3569999999986543        2346799999


Q ss_pred             hhcCCCCcceEEEEecCCCC-CCCCcEEEECCCCCCceecceeEeeecc----cceeEEEEccEEEcCeeeceecCCceE
Q 016530           95 VEQGLVSEEVFSFWLNRDPD-AEEGGEIVFGGVDPKHFKGKHTYVPVTK----KGYWQFELGDILIGNQSTGVCEGGCAA  169 (388)
Q Consensus        95 ~~qg~i~~~~FSl~L~~~~~-~~~~G~L~fGgid~~~~~g~l~~~pv~~----~~~w~v~l~~i~vgg~~~~~~~~~~~a  169 (388)
                      ++|+.++++.||+|+.+... ...+|.|+|||+|++++.+++.|+|+..    ..||.+.+..+..++..+.   .+..+
T Consensus       133 ~~q~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~~g~i~~~pv~~~~~~~~y~~i~~~~~~~~~~~~~---~~~~a  209 (340)
T d1wkra_         133 FSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTSIL---SSTAG  209 (340)
T ss_dssp             HHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEEEEEEETTTEEEE---EEEEE
T ss_pred             HhhhccchhheeeeecccCCCCCCCceEEccccChhhcccceEEEEeecCCCCcceeEEEEEEEECCceEec---cCcce
Confidence            99999999999999987643 2346899999999999999999999964    4689999876665665543   45679


Q ss_pred             EEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeee
Q 016530          170 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVV  249 (388)
Q Consensus       170 ivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~  249 (388)
                      +|||||+++++|++++++|.+++++..                                                     
T Consensus       210 iiDSGtt~~~lP~~~~~~l~~~~~~~~-----------------------------------------------------  236 (340)
T d1wkra_         210 IVDTGTTLTLIASDAFAKYKKATGAVA-----------------------------------------------------  236 (340)
T ss_dssp             EECTTBCSEEECHHHHHHHHHHHTCEE-----------------------------------------------------
T ss_pred             EEecCCccEeccHHHHHHHHHHhCccc-----------------------------------------------------
Confidence            999999999999999999999986531                                                     


Q ss_pred             ecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCc
Q 016530          250 EKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSP  329 (388)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p  329 (388)
                                                                     ....+.|.++|+...++|+|+|+|+|..++++|
T Consensus       237 -----------------------------------------------~~~~~~~~~~c~~~~~~P~i~f~f~g~~~~i~~  269 (340)
T d1wkra_         237 -----------------------------------------------DNNTGLLRLTTAQYANLQSLFFTIGGQTFELTA  269 (340)
T ss_dssp             -----------------------------------------------CTTTSSEEECHHHHHTCCCEEEEETTEEEEECT
T ss_pred             -----------------------------------------------cCCceEEEEeccccCCCCceEEEECCEEEEECh
Confidence                                                           123456889998777899999999999999999


Q ss_pred             ccceeeeccC----ccccee-EeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          330 EQYILKTGEG----IAEVCI-SGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       330 ~~yi~~~~~~----~~~~C~-~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ++|+.+....    ....|. ..+.........+..||||.+|||++|+|||++++|||||+++
T Consensus       270 ~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~  333 (340)
T d1wkra_         270 NAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTS  333 (340)
T ss_dssp             GGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECT
T ss_pred             HHeEeeccCceeecCccceEEEEEecccCCCCCCCCEEechHHhCCEEEEEECCCCEEEEEECC
Confidence            9999764321    112222 2222222233345689999999999999999999999999975

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=1.8e-35  Score=286.01  Aligned_cols=245  Identities=21%  Similarity=0.301  Sum_probs=201.7

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC-CCCchhhhhhhcCCC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG-DAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~-~~~~~~~~L~~qg~i  100 (388)
                      .++|+.+ .+.|.++.|+++++   +.++++|.|++++...       ..+|++|||++..+.. ...+++.+|.+|+.+
T Consensus        81 ~~~Y~~g~~~~G~~~~d~~~~~---~~~~~~~~~~~~~~~~-------~~~g~~Glg~~~~~~~~~~~~~~~~L~~q~~i  150 (342)
T d1eaga_          81 KIGYGDGSSSQGTLYKDTVGFG---GVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVI  150 (342)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSCCCHHHHHHHTTSS
T ss_pred             EEEeCCCceEEEEEEeeEEEec---eEeeeeeEEEeeceee-------cccccccccccccccCCccCccceehhhcCCc
Confidence            4566655 56799999999999   8999999999998753       2489999999877643 356789999999999


Q ss_pred             CcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCccc
Q 016530          101 SEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAG  180 (388)
Q Consensus       101 ~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~l  180 (388)
                      ++++||+|+.+.+.  ..|.|+|||+|+.++.+++.|+|+.++.+|.+.+.+|++||+.+.  ..+..++|||||+++++
T Consensus       151 ~~~~fs~~l~~~~~--~~G~l~~Gg~d~~~~~g~~~~~p~~~~~~w~v~l~~i~vgg~~~~--~~~~~~iiDSGts~~~l  226 (342)
T d1eaga_         151 AKNAYSLYLNSPDA--ATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTIN--TDNVDVLLDSGTTITYL  226 (342)
T ss_dssp             SSSEEEEECCCTTC--SEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEE--EEEEEEEECTTCSSEEE
T ss_pred             cceEEEEEcCCCCC--CCceEEEcccCchhccceEEEEecccccceEEEEeeEEECCEEec--ccccccccccCCccccC
Confidence            99999999987643  479999999999999999999999999999999999999999875  35667999999999999


Q ss_pred             CHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCc
Q 016530          181 PTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSA  260 (388)
Q Consensus       181 P~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (388)
                      |++++++|.+++++...                                                    +          
T Consensus       227 p~~~~~~l~~~l~~~~~----------------------------------------------------~----------  244 (342)
T d1eaga_         227 QQDLADQIIKAFNGKLT----------------------------------------------------Q----------  244 (342)
T ss_dssp             CHHHHHHHHHHTTCEEE----------------------------------------------------E----------
T ss_pred             CHHHHHHHHHHhCcccc----------------------------------------------------c----------
Confidence            99999999999976410                                                    0          


Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeeccC
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIG-DKIFNLSPEQYILKTGEG  339 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~g-g~~~~l~p~~yi~~~~~~  339 (388)
                                                         .......|.++|+   ..|+++|+|+ +..+.|+|++|+.+....
T Consensus       245 -----------------------------------~~~~~~~~~~~c~---~~p~i~f~f~~~~~~~i~~~~y~~~~~~~  286 (342)
T d1eaga_         245 -----------------------------------DSNGNSFYEVDCN---LSGDVVFNFSKNAKISVPASEFAASLQGD  286 (342)
T ss_dssp             -----------------------------------CTTSCEEEEEESC---CCSEEEEECSTTCEEEEEGGGGEEEC---
T ss_pred             -----------------------------------cCCCCceeccccc---cCCCEEEEECCCEEEEEChHHeEEEecCC
Confidence                                               0112335789998   4799999996 799999999999976432


Q ss_pred             ---cccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          340 ---IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       340 ---~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                         ....|...+..       ++.||||++|||++|+|||++++|||||+++
T Consensus       287 ~~~~~~~~~~~~~~-------~~~~ILG~~fl~~~y~vfD~~~~~iGfA~a~  331 (342)
T d1eaga_         287 DGQPYDKCQLLFDV-------NDANILGDNFLRSAYIVYDLDDNEISLAQVK  331 (342)
T ss_dssp             CCSCTTEEEECEEE-------CTTCEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             CCceeeEEEEccCC-------CCCcEECHHhhCcEEEEEECCCCEEEEEECC
Confidence               12346655542       3568999999999999999999999999974

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=100.00  E-value=3.7e-35  Score=285.31  Aligned_cols=254  Identities=22%  Similarity=0.345  Sum_probs=207.7

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccc-----cccCccEEEeeccCcccc------CCCCchh
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTF-----LLARFDGIIGLGFREIAV------GDAVPVW   91 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f-----~~~~~dGIlGLg~~~~s~------~~~~~~~   91 (388)
                      .+.|..+.+.|.+..|+++++   +++++++.|+.++...+..+     .....+|++|||+...+.      ....+++
T Consensus        75 ~~~y~~g~~~G~~~~d~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~  151 (357)
T d1mppa_          75 NITYGTGGANGIYFRDSITVG---GATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVH  151 (357)
T ss_dssp             EEECSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHH
T ss_pred             EEecCCCcEEEEEEeeecccc---cceECcEEEEEEEeecccceecccccccccccccccccCCccccccccCCCCCCHH
Confidence            467788889999999999999   89999999999998654322     233568999999976542      2456899


Q ss_pred             hhhhhcCCCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeeccc----ceeEEEEccEEEcCeeeceecCCc
Q 016530           92 DNMVEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKK----GYWQFELGDILIGNQSTGVCEGGC  167 (388)
Q Consensus        92 ~~L~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~----~~w~v~l~~i~vgg~~~~~~~~~~  167 (388)
                      .+|++||+|++++||+||++.+   ..|.|+|||+|++++++++.|+|+...    .||.|.+++|.++++.........
T Consensus       152 ~~l~~~~~i~~~~fs~~l~~~~---~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~  228 (357)
T d1mppa_         152 VNLYKQGLISSPVFSVYMNTND---GGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQ  228 (357)
T ss_dssp             HHHHHTTSSSSSEEEEECCCSS---SEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             HHHHhccccccceEEEEeccCC---CCceEECcccChhHcCCceeEEEeccCCCCceeEEEEEeeEEECCeEeeecCCCc
Confidence            9999999999999999998754   379999999999999999999999643    489999999999998765444566


Q ss_pred             eEEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCccccccccee
Q 016530          168 AAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKT  247 (388)
Q Consensus       168 ~aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~  247 (388)
                      .++|||||+++++|++++++|.+++....                                                   
T Consensus       229 ~~ilDSGts~~~lp~~~~~~i~~~~~~~~---------------------------------------------------  257 (357)
T d1mppa_         229 AFTIDTGTNFFIAPSSFAEKVVKAALPDA---------------------------------------------------  257 (357)
T ss_dssp             EEEEETTCCSEEEEHHHHHHHHHHHCTTC---------------------------------------------------
T ss_pred             ceEeeccCccccCCHHHHHHHHHHhcCCc---------------------------------------------------
Confidence            78999999999999999999999985431                                                   


Q ss_pred             eeecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCC-CCCCcEEEEEC-----
Q 016530          248 VVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI-PTMPNVSFTIG-----  321 (388)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~-~~lP~i~f~~g-----  321 (388)
                                                                       ....+.|.+||+.. ...|.++|.|+     
T Consensus       258 -------------------------------------------------~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~  288 (357)
T d1mppa_         258 -------------------------------------------------TESQQGYTVPCSKYQDSKTTFSLVLQKSGSS  288 (357)
T ss_dssp             -------------------------------------------------EEETTEEEEEHHHHTTCCCEEEEEEECTTCS
T ss_pred             -------------------------------------------------cccCCceecccccccccCceEEEEEeccccc
Confidence                                                             01234578899643 45678888774     


Q ss_pred             --CEEEEeCcccceeeeccCcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          322 --DKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       322 --g~~~~l~p~~yi~~~~~~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                        +..+.++|++|+.+... ....|++.++..+     ++.||||++|||++|+|||++++||||||+|
T Consensus       289 ~~~~~~~~p~~~~~~~~~~-~~~~c~~~~~~~~-----~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~  351 (357)
T d1mppa_         289 SDTIDVSVPISKMLLPVDK-SGETCMFIVLPDG-----GNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA  351 (357)
T ss_dssp             SCEEEEEEEGGGGEEECSS-SSCEEEESEEEES-----SSCCEEEHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             cccEEEEEchHHeEEEecC-CCCEEEEEEcCCC-----CCCEEechHHhCCEEEEEECCCCEEEEEECC
Confidence              25789999999987653 3568998887542     3678999999999999999999999999986

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=100.00  E-value=6.6e-35  Score=278.61  Aligned_cols=248  Identities=23%  Similarity=0.325  Sum_probs=202.9

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC--CCCchhhhhhhcCC
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGL   99 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg~   99 (388)
                      .+.|..+ .+.|.+..|+++++   +.++.++.|+++.......+.....+||+|||++..+..  ...+.+..+.+. .
T Consensus        72 ~~~Y~~G~~~~G~~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~s~~~~~~~~~~~~~~~~-~  147 (323)
T d1bxoa_          72 SISYGDGSSASGNVFTDSVTVG---GVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKS-S  147 (323)
T ss_dssp             EEECTTSCEEEEEEEEEEEEET---TEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGG-G
T ss_pred             EEEeCCCCcEEEEEEEEeeecc---CcccccceeeeeeeeecccccccccccccccccCcccccCCCcCchHHHHHhh-h
Confidence            4556655 58999999999999   899999999999987665455567899999999876642  233444444333 3


Q ss_pred             CCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc-cceeEEEEccEEEcCeeeceecCCceEEEcCCCcCc
Q 016530          100 VSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK-KGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLL  178 (388)
Q Consensus       100 i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~-~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i  178 (388)
                      +..+.|++++.+..    .|.|+|||+|++++.++++|+|+.. ..||.++++++.++++...    ...+++||||+++
T Consensus       148 ~~~~~fs~~~~~~~----~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~----~~~aiiDSGTs~~  219 (323)
T d1bxoa_         148 LAQPLFAVALKHQQ----PGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGD----GFSGIADTGTTLL  219 (323)
T ss_dssp             BSSSEEEEECCSSS----CEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETTEEEE----EEEEEECTTCSSE
T ss_pred             cccceeeeccccCC----CceeeeeccccccccCceeeeeccCcccceeEeeeeEEECCEecC----CcceEEecccccc
Confidence            67899999988763    7999999999999999999999965 6799999999999998653    4579999999999


Q ss_pred             ccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCC
Q 016530          179 AGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD  258 (388)
Q Consensus       179 ~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  258 (388)
                      ++|.+++++|++++++..                                                              
T Consensus       220 ~lp~~~~~~l~~~i~~~~--------------------------------------------------------------  237 (323)
T d1bxoa_         220 LLDDSVVSQYYSQVSGAQ--------------------------------------------------------------  237 (323)
T ss_dssp             EECHHHHHHHHTTSTTCE--------------------------------------------------------------
T ss_pred             cCCHHHHHHHHHHhCCcc--------------------------------------------------------------
Confidence            999999999998886541                                                              


Q ss_pred             CcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeecc
Q 016530          259 SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGE  338 (388)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~  338 (388)
                                                           .+...+.|.++|+.  ++|+|+|+|+|..+.|+|++|++....
T Consensus       238 -------------------------------------~~~~~~~~~~~c~~--~~p~itf~f~g~~~~i~~~~~~~~~~~  278 (323)
T d1bxoa_         238 -------------------------------------QDSNAGGYVFDCST--NLPDFSVSISGYTATVPGSLINYGPSG  278 (323)
T ss_dssp             -------------------------------------EETTTTEEEECTTC--CCCCEEEEETTEEEEECHHHHEEEECS
T ss_pred             -------------------------------------ccCCCCcEEEeccC--CCCcEEEEECCEEEEEChHHeEEEEcC
Confidence                                                 01234568899984  799999999999999999999876543


Q ss_pred             CcccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          339 GIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       339 ~~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                       +..+|++.|...+    ..+.||||++|||++|+|||++++|||||++|
T Consensus       279 -~~~~C~~~i~~~~----~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~~  323 (323)
T d1bxoa_         279 -DGSTCLGGIQSNS----GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA  323 (323)
T ss_dssp             -SSSCEEESEEECT----TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             -CCCEEEEEEECCC----CCCcEEECHHHhCCEEEEEECCCCEEeEEeCC
Confidence             4578999888643    33568999999999999999999999999987

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=100.00  E-value=5.4e-34  Score=271.58  Aligned_cols=252  Identities=25%  Similarity=0.429  Sum_probs=211.8

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCC-ccccccCccEEEeeccCccccCCCCchhhhhhhcCCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGS-LTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVS  101 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~-~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~  101 (388)
                      .+.|..+.++|.++.|+++++   +.++.++.++.+..... ..+.....+|++||++.........+++..+..++.++
T Consensus        74 ~~~Y~~g~~~G~~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~i~  150 (329)
T d2bjua1          74 EMNYVSGTVSGFFSKDLVTVG---NLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIE  150 (329)
T ss_dssp             EEECSSSEEEEEEEEEEEEET---TEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSS
T ss_pred             EEEcCCCcEEEEEEEeeeeee---eeeeccceEEEEEeeccCccccccccCccccccccccccCCccccchhhhhhhccc
Confidence            567788889999999999999   89999999988876432 23445578999999998888778888999999999999


Q ss_pred             cceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccC
Q 016530          102 EEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGP  181 (388)
Q Consensus       102 ~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP  181 (388)
                      ++.||+++.+...  ..|.++|||+|+.++.+++.|.|+....+|.+.++.+.++...     .+..++|||||+++++|
T Consensus       151 ~~~fs~~l~~~~~--~~g~l~~gg~d~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~iDSGt~~~~lp  223 (329)
T d2bjua1         151 NALFTFYLPVHDK--HTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIML-----EKANCIVDSGTSAITVP  223 (329)
T ss_dssp             SCEEEEECCBTTT--BCEEEEESSCCGGGEEEEEEEEEEEEETTEEEEEEEEETTEEE-----EEEEEEECTTCCSEEEC
T ss_pred             cceeeEEecCCcC--CcceeeecCCCcccccCceEEEeeeeeeeEEEEEeeeEeeeEc-----cCCcccccccccceeCC
Confidence            9999999988643  4799999999999999999999999999999999877644332     34569999999999999


Q ss_pred             HHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCcc
Q 016530          182 TPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAV  261 (388)
Q Consensus       182 ~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (388)
                      .+++++|++++++..                                                                 
T Consensus       224 ~~~~~~l~~~~~~~~-----------------------------------------------------------------  238 (329)
T d2bjua1         224 TDFLNKMLQNLDVIK-----------------------------------------------------------------  238 (329)
T ss_dssp             HHHHHHHTTTSSCEE-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCee-----------------------------------------------------------------
Confidence            999999998886541                                                                 


Q ss_pred             cchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCcc
Q 016530          262 CSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIA  341 (388)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~  341 (388)
                                                         ....+.|..+|+ ...+|.++|.|+|.+++|+|++|+.+..+...
T Consensus       239 -----------------------------------~~~~~~~~~~~~-~~~~p~~~f~~~g~~~~i~p~~y~~~~~~~~~  282 (329)
T d2bjua1         239 -----------------------------------VPFLPFYVTLCN-NSKLPTFEFTSENGKYTLEPEYYLQHIEDVGP  282 (329)
T ss_dssp             -----------------------------------CTTSSCEEEETT-CTTCCCEEEECSSCEEEECHHHHEEECTTTST
T ss_pred             -----------------------------------cCCCCeeEeecc-cCCCCceeEEeCCEEEEECHHHhEEEeecCCC
Confidence                                               011233555665 46799999999999999999999998877667


Q ss_pred             cceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          342 EVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       342 ~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      ..|++.|+..+.   ..+.||||.+|||++|+|||++++|||||+++
T Consensus       283 ~~C~~~i~~~~~---~~~~~IlG~~fl~~~y~vfD~~~~~iGfA~a~  326 (329)
T d2bjua1         283 GLCMLNIIGLDF---PVPTFILGDPFMRKYFTVFDYDNHSVGIALAK  326 (329)
T ss_dssp             TEEEECEEECCC---SSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEEEECCC---CCCCEEEchHhhCcEEEEEECCCCEEEEEEec
Confidence            899999997652   34679999999999999999999999999985

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.2e-33  Score=262.26  Aligned_cols=250  Identities=36%  Similarity=0.664  Sum_probs=218.0

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccCCCCchhhhhhhcCCCCc
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVGDAVPVWDNMVEQGLVSE  102 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~  102 (388)
                      .++|..+-++|.++.|.++++   +.++..+.|+.+..+.+..+......+++|+++...+.....+++.+|+++++|++
T Consensus        74 ~~~y~~gs~~G~~~~d~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~i~~  150 (323)
T d3cmsa_          74 SIHYGTGSMQGILGYDTVTVS---NIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQ  150 (323)
T ss_dssp             EEEETTEEEEEEEEEEEEEET---TEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSS
T ss_pred             EEEcCCceEEEEEEEEEEEEe---ccccccceEEEEEeecccccccccccccccccccccccCCCcchhhhHhhcCCCcc
Confidence            567888899999999999999   88999999999988877666666778999999988887788889999999999999


Q ss_pred             ceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeeceecCCceEEEcCCCcCcccCH
Q 016530          103 EVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPT  182 (388)
Q Consensus       103 ~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aivDSGTs~i~lP~  182 (388)
                      +.||+++.++.   ..|.+.+|++|..++.+++.|+|..+..+|.+.+.++.+++.... ......++|||||+++++|+
T Consensus       151 ~~fs~~l~~~~---~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiDSGtt~~~lp~  226 (323)
T d3cmsa_         151 DLFSVYMDRNG---QESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPS  226 (323)
T ss_dssp             SEEEEECCTTS---SCEEEEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE-STTCEEEEECTTCCSEEECH
T ss_pred             cceeEEeccCC---CCCceeccccCcccccCceEEeeccccceeEEEEeeEeeCCeeee-cCCCeeEEEecCcceEEecH
Confidence            99999998864   479999999999999999999999999999999999999988765 24567899999999999999


Q ss_pred             HHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeecccccCCCCccc
Q 016530          183 PVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVC  262 (388)
Q Consensus       183 ~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (388)
                      ++++++.+++++..                                                                  
T Consensus       227 ~~~~~l~~~~~~~~------------------------------------------------------------------  240 (323)
T d3cmsa_         227 SDILNIQQAIGATQ------------------------------------------------------------------  240 (323)
T ss_dssp             HHHHHHHHHHTCEE------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCcee------------------------------------------------------------------
Confidence            99999999996541                                                                  


Q ss_pred             chhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEECCEEEEeCcccceeeeccCccc
Q 016530          263 SACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAE  342 (388)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~  342 (388)
                                                         ...+.+..+|+....+|+|+|+|+|..++|+|++|+.+.    +.
T Consensus       241 -----------------------------------~~~~~~~~~~~~~~~~p~i~f~f~g~~~~l~~~~y~~~~----~~  281 (323)
T d3cmsa_         241 -----------------------------------NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQD----QG  281 (323)
T ss_dssp             -----------------------------------ETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEEEE----TT
T ss_pred             -----------------------------------ccCCceeEeccccCCCCeEEEEECCEEEEECHHHeEEcC----CC
Confidence                                               113456788888788999999999999999999999763    36


Q ss_pred             ceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          343 VCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       343 ~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      .|++.|+..+    .++.+|||++|||++|++||++++|||||||.
T Consensus       282 ~c~~~i~~~~----~~~~~iLG~~~l~~~yvvfD~~~~~igfa~a~  323 (323)
T d3cmsa_         282 FCTSGFQSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKAI  323 (323)
T ss_dssp             EEEESEEEC-------CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEEeCC----CCCCEEEcHHhhCcEEEEEECCCCEEEEEEeC
Confidence            8999998653    34678999999999999999999999999984

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.2e-31  Score=263.85  Aligned_cols=265  Identities=22%  Similarity=0.279  Sum_probs=198.0

Q ss_pred             eEEeeeeEEEEEEEeeeEEeecccceEeeCcEEEEEEeeCCccccccCccEEEeeccCccccC--CCCchhhhhhhcCCC
Q 016530           23 RIRCVLVLIVHFLNWCPFTWQCACLQIFLLQVFIEATREGSLTFLLARFDGIIGLGFREIAVG--DAVPVWDNMVEQGLV  100 (388)
Q Consensus        23 ~~~~~~~~~~g~~~~d~~~~~~~~~~~v~~~~Fg~~~~~~~~~f~~~~~dGIlGLg~~~~s~~--~~~~~~~~L~~qg~i  100 (388)
                      .+.|..+.+.|++++|+|+++.......+ +.|+.++......+....+|||||||++..+..  ...++++.|.+++.+
T Consensus        70 ~i~Y~~g~~~G~~~~D~v~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~  148 (387)
T d2qp8a1          70 YVPYTQGKWEGELGTDLVSIPHGPNVTVR-ANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV  148 (387)
T ss_dssp             EEECSSCEEEEEEEEEEEECTTSCSCEEE-EEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC
T ss_pred             EEEeCCccEEEEEEEEEEEEcCCCceeEe-EEEEEEEecCCcccccccccccccccccccccCCCCCCchHHHHhhccCc
Confidence            57778888999999999999854445555 445555544444455667899999999877643  446678888888876


Q ss_pred             CcceEEEEecCCCC--------CCCCcEEEECCCCCCceecceeEeeecccceeEEEEccEEEcCeeecee---cCCceE
Q 016530          101 SEEVFSFWLNRDPD--------AEEGGEIVFGGVDPKHFKGKHTYVPVTKKGYWQFELGDILIGNQSTGVC---EGGCAA  169 (388)
Q Consensus       101 ~~~~FSl~L~~~~~--------~~~~G~L~fGgid~~~~~g~l~~~pv~~~~~w~v~l~~i~vgg~~~~~~---~~~~~a  169 (388)
                       +++||+|+.+...        ...+|+|+|||+|++++.++++|+|+..+.+|.+.+.+|.++++.+...   .....+
T Consensus       149 -~~~fs~~l~~~~~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~a  227 (387)
T d2qp8a1         149 -PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKS  227 (387)
T ss_dssp             -CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCE
T ss_pred             -ceeEeEeeccccccccccccccCCCceeEecccccccccCceEeecccccceeEEEEEEEEECCEecccccccCCccce
Confidence             6899999976531        2357999999999999999999999999999999999999999987532   235679


Q ss_pred             EEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeee
Q 016530          170 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVV  249 (388)
Q Consensus       170 ivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~  249 (388)
                      +||||++++++|++++++|.+++++...        ...+.                                       
T Consensus       228 iiDSGts~i~lp~~~~~~l~~~~~~~~~--------~~~~~---------------------------------------  260 (387)
T d2qp8a1         228 IVDSGTTNLRLPKKVFEAAVKSIKAASS--------TEKFP---------------------------------------  260 (387)
T ss_dssp             EECTTCCSEEEEHHHHHHHHHHHHHHTT--------TSCCC---------------------------------------
T ss_pred             EEecCCCeEeCCHHHHHHHHHHhccccc--------ccccC---------------------------------------
Confidence            9999999999999999999999854310        00000                                       


Q ss_pred             ecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCC-----CCCCcEEEEECC--
Q 016530          250 EKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRI-----PTMPNVSFTIGD--  322 (388)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~-----~~lP~i~f~~gg--  322 (388)
                                                       ..              ....+.++|...     ..+|.++|.|.+  
T Consensus       261 ---------------------------------~~--------------~~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~  293 (387)
T d2qp8a1         261 ---------------------------------DG--------------FWLGEQLVCWQAGTTPWNIFPVISLYLMGEV  293 (387)
T ss_dssp             ---------------------------------HH--------------HHTTCSCEEESTTCCCGGGSCCEEEEEECSS
T ss_pred             ---------------------------------Cc--------------cccceeeeeeecCCCccccccceEEEecccc
Confidence                                             00              000112233322     247899999853  


Q ss_pred             ----EEEEeCcccceeeeccC--cccceeEeeEeccCCCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          323 ----KIFNLSPEQYILKTGEG--IAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       323 ----~~~~l~p~~yi~~~~~~--~~~~C~~~i~~~d~~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                          ..++|+|++|+.+..+.  ....|+..+...     ....||||++|||++|+|||++++|||||+++
T Consensus       294 ~~~~~~~~i~p~~y~~~~~~~~~~~~~c~~~~~~~-----~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~  360 (387)
T d2qp8a1         294 TNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ-----SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA  360 (387)
T ss_dssp             TTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEE-----ESSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred             ccceEEEEECHHHheeeccccCCcCceEEEEEeCC-----CCCCEEEhHHhhCcEEEEEECCCCEEEEEECC
Confidence                57999999999876542  345687665543     23568999999999999999999999999985

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.96  E-value=5.2e-29  Score=242.96  Aligned_cols=272  Identities=16%  Similarity=0.134  Sum_probs=181.9

Q ss_pred             eEEeeee-EEEEEEEeeeEEeecccceEeeCc----EEEEEEeeCC---ccccccCccEEEeeccCccccCCCCchhhhh
Q 016530           23 RIRCVLV-LIVHFLNWCPFTWQCACLQIFLLQ----VFIEATREGS---LTFLLARFDGIIGLGFREIAVGDAVPVWDNM   94 (388)
Q Consensus        23 ~~~~~~~-~~~g~~~~d~~~~~~~~~~~v~~~----~Fg~~~~~~~---~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L   94 (388)
                      .|+|+.+ .+.|.++.|+|+++   +...+++    .|+.+.....   ..+.....|||+|||+...+      +..+|
T Consensus        84 ~~~Y~~Gs~~~G~~~~D~v~ig---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s------~~~ql  154 (381)
T d1t6ex_          84 PYNPVSGACAAGSLSHTRFVAN---TTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLA------LPAQV  154 (381)
T ss_dssp             CBCTTTCCBCCEEEEEEEEEEE---EESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTS------HHHHH
T ss_pred             EEEeCCCCEEEEEEEEEEEEec---ccccccceeeEEeeeeeeccccccccccccCcceeeecCCCCcc------hHHHH
Confidence            4667666 57799999999998   5444433    3333332211   12334567999999987654      66777


Q ss_pred             hhcCCCCcceEEEEecCCCCCCCCcEEEECCCCCCceecceeEeeecc---cceeEEEEccEEEcCeeecee---cCCce
Q 016530           95 VEQGLVSEEVFSFWLNRDPDAEEGGEIVFGGVDPKHFKGKHTYVPVTK---KGYWQFELGDILIGNQSTGVC---EGGCA  168 (388)
Q Consensus        95 ~~qg~i~~~~FSl~L~~~~~~~~~G~L~fGgid~~~~~g~l~~~pv~~---~~~w~v~l~~i~vgg~~~~~~---~~~~~  168 (388)
                      .+++.++ ++|++++.+...  ..+.+.+|+++..++.|++.|+|+..   ..+|.+.+.+|.++++.+...   .....
T Consensus       155 ~~~~~~~-~~fsl~l~~~~~--~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~  231 (381)
T d1t6ex_         155 ASAQKVA-NRFLLCLPTGGP--GVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGG  231 (381)
T ss_dssp             HHHHTCC-SEEEEECCSSSC--EEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTC
T ss_pred             hhhcCcc-eEEEeecCCCcc--cceEeecccccccccCCceEEEeeeccCCCceeEEEEEEEeeCCeeeccCcccccCcc
Confidence            7777774 789999977642  35777888899999999999999964   368999999999999987542   34567


Q ss_pred             EEEcCCCcCcccCHHHHHHHHHHhCCcceeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceee
Q 016530          169 AIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTV  248 (388)
Q Consensus       169 aivDSGTs~i~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~  248 (388)
                      +++||||+++++|+++++++.+.+....        ....+..          .+...|     |               
T Consensus       232 ~i~DTGtt~~~lp~~~~~~i~~~~~~~~--------~~~~~~~----------~~~~~~-----~---------------  273 (381)
T d1t6ex_         232 VMLSTRLPYVLLRPDVYRPLMDAFTKAL--------AAQHANG----------APVARA-----V---------------  273 (381)
T ss_dssp             EEECSSCSSEEECHHHHHHHHHHHHHHH--------HHC-----------------CCE-----E---------------
T ss_pred             eEEecCCceEECCHHHHHHHHHHHHHHh--------ccccccc----------cccccc-----c---------------
Confidence            9999999999999999999999885320        0000000          000000     0               


Q ss_pred             eecccccCCCCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeecCCCCCCCCcEEEEE-CCEEEEe
Q 016530          249 VEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTI-GDKIFNL  327 (388)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~~~~~~v~C~~~~~lP~i~f~~-gg~~~~l  327 (388)
                       +..                                   ..-.+|...+..     ..+..-..+|+++|+| ++..+.+
T Consensus       274 -~~~-----------------------------------~~~~~~~~~~~~-----~~~~~~~~~P~i~~~f~~~~~~~i  312 (381)
T d1t6ex_         274 -EAV-----------------------------------APFGVCYDTKTL-----GNNLGGYAVPNVQLGLDGGSDWTM  312 (381)
T ss_dssp             -CCC-----------------------------------TTCSCEEEGGGC-----CEETTEECCCCEEEEETTSCEEEE
T ss_pred             -ccc-----------------------------------CCcceeeccccc-----cccccccccccEEEEEcCCcEEEE
Confidence             000                                   000011111100     0111123689999999 5899999


Q ss_pred             CcccceeeeccCcccceeEeeEec-cC--CCCCCCceEEcHhhhcceEEEEeCCCCeEEEEecC
Q 016530          328 SPEQYILKTGEGIAEVCISGFMAF-DL--PPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA  388 (388)
Q Consensus       328 ~p~~yi~~~~~~~~~~C~~~i~~~-d~--~~~~~~~~ILG~~Flr~~y~VfD~~~~rIGfA~~~  388 (388)
                      +|++|++...+  ...|+. |... ..  ....++.||||++|||++|+|||++++|||||+++
T Consensus       313 ~~~~y~~~~~~--~~~Cl~-i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~  373 (381)
T d1t6ex_         313 TGKNSMVDVKQ--GTACVA-FVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP  373 (381)
T ss_dssp             CHHHHEEEEET--TEEEES-EEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred             ChhHeEEEeCC--CcEEEE-EEecccccCCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEECC
Confidence            99999987654  356764 4432 11  12234679999999999999999999999999875

>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Swaposin
domain: (Pro)phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.66  E-value=1.4e-17  Score=135.88  Aligned_cols=101  Identities=52%  Similarity=0.994  Sum_probs=74.8

Q ss_pred             eeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccccCCcccccccceeeeec---ccccCCCCcccchhhhhHHHHH
Q 016530          197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK---ENVSAGDSAVCSACEMAVVWVQ  273 (388)
Q Consensus       197 ~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  273 (388)
                      ++++||+.+|++|++.|+++|.++++|+++|+.+|+|+.++.+.........+..   .+.+.++++.|.+|++++++++
T Consensus         1 ~ls~eC~~~V~~Y~~~ii~~L~~~~~P~~IC~~lglC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~v~~v~   80 (104)
T d1qdma1           1 VVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQ   80 (104)
T ss_dssp             BCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC---------------------------CHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCcccccccccchhhhhhhhccccccccCCCCCchhhHHHHHHHHH
Confidence            4789999999999999999999999999999999999987765554222222221   2445678899999999999999


Q ss_pred             HHhhhchhHHHHHHHhhhhccCCC
Q 016530          274 NQLKQKQTKEKVLSYINELCDSLP  297 (388)
Q Consensus       274 ~~~~~~~t~~~i~~~~~~~c~~~p  297 (388)
                      ..|++|+|+++|+..++++|+++|
T Consensus        81 ~~l~~n~Te~eI~~~l~~vC~~LP  104 (104)
T d1qdma1          81 NQLAQNKTQDLILDYVNQLCNRLP  104 (104)
T ss_dssp             HHHHTTCCHHHHHHHHHHHTTCBC
T ss_pred             HHHHccccHHHHHHHHHHHHhhCc
Confidence            999999999999999999999987

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.18  E-value=7.3e-05  Score=56.00  Aligned_cols=38  Identities=21%  Similarity=0.506  Sum_probs=35.8

Q ss_pred             eeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccc
Q 016530          197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  234 (388)
Q Consensus       197 ~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~  234 (388)
                      .+..+|+.+|++|++.|+++|.+..+|+++|+.+++|.
T Consensus        40 ~~~~~C~~~v~~y~~~ii~~l~~~~~p~~iC~~l~lC~   77 (78)
T d1nkla_          40 ILRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICK   77 (78)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCcCC
Confidence            36889999999999999999999999999999999995

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

Probab=97.08  E-value=9.6e-05  Score=55.43  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=35.3

Q ss_pred             eeecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016530          197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  233 (388)
Q Consensus       197 ~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c  233 (388)
                      .++.+|+.+|++|++.|+++|.++.+|+.+|+.+++|
T Consensus        41 ~~~~~C~~~v~~y~~~ii~~l~~~~~p~~iC~~l~lC   77 (77)
T d1of9a_          41 FIATLCTKVLDFGIDKLIQLIEDKVDANAICAKIHAC   77 (77)
T ss_dssp             TTHHHHHHHHHHCHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence            4689999999999999999999999999999999998

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00029  Score=52.34  Aligned_cols=39  Identities=26%  Similarity=0.648  Sum_probs=37.1

Q ss_pred             cccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 016530          260 AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  298 (388)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~  298 (388)
                      +.|.+|++++.+++..++++.|+++|...++++|+.+|.
T Consensus         2 i~C~~C~~~v~~~~~~l~~~~t~~~I~~~l~~~C~~lp~   40 (78)
T d2gtga1           2 VYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPK   40 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSSCH
T ss_pred             CccHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCc
Confidence            469999999999999999999999999999999999985

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0003  Score=52.82  Aligned_cols=35  Identities=26%  Similarity=0.765  Sum_probs=32.8

Q ss_pred             eecchhhhhhhhhhhHHHHHhhCCCchhhhhhcccc
Q 016530          198 VSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLC  233 (388)
Q Consensus       198 ~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c  233 (388)
                      +..+|+.+|++|++.|+++| +.++|+.+|+.+++|
T Consensus        43 ~~~~C~~~V~~y~~~ii~~l-~~~~P~~iC~~l~lC   77 (78)
T d1n69a_          43 MADICKNYISQYSEIAIQMM-MHMQPKEICALVGFC   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHTTSC
T ss_pred             HHHHhHHHHHHHHHHHHHHH-HcCCHHHHHhHcCCC
Confidence            67899999999999999998 569999999999999

>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Saposin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00024  Score=52.83  Aligned_cols=38  Identities=39%  Similarity=0.786  Sum_probs=35.6

Q ss_pred             eeecchhhhhhhhhhhHHHHHhhCCCchhhhhhccccc
Q 016530          197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCA  234 (388)
Q Consensus       197 ~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~~~c~  234 (388)
                      .++.+|+.+|++|++.|+++|.+.++|+.+|+.+++|.
T Consensus        41 ~~~~~C~~~v~~y~~~ii~~l~~~~~p~~iC~~l~lCs   78 (78)
T d2gtga1          41 SLSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS   78 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTSCC
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCcC
Confidence            36889999999999999999999999999999999993

>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Ameobapore A
domain: Ameobapore A
species: Entamoeba histolytica [TaxId: 5759]

Probab=96.60  E-value=0.00052  Score=51.22  Aligned_cols=41  Identities=27%  Similarity=0.507  Sum_probs=35.7

Q ss_pred             CCcccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCCC
Q 016530          258 DSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNP  299 (388)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~~  299 (388)
                      +...|.+|+.+++.+++.++|+ |+++|...++++|+.+|..
T Consensus         1 G~~~C~~C~~~v~~~~~l~~~~-t~~~I~~~l~~~C~~lp~~   41 (77)
T d1of9a_           1 GEILCNLCTGLINTLENLLTTK-GADKVKDYISSLCNKASGF   41 (77)
T ss_dssp             CCSSHHHHHHHHHHHHHHCSSS-CSHHHHHHHHHHHTTCSST
T ss_pred             CCcchHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHCChH
Confidence            4578999999999999888655 7788999999999999854

>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: NK-lysin, NKL
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.14  E-value=0.00092  Score=49.68  Aligned_cols=38  Identities=16%  Similarity=0.460  Sum_probs=36.5

Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  298 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~  298 (388)
                      .|..|+.++.+++..++++.++++|...++++|..+|.
T Consensus         3 ~C~~C~~~v~~~~~~l~~~~t~~~I~~~l~~~C~~lp~   40 (78)
T d1nkla_           3 FCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI   40 (78)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCS
T ss_pred             ccHhhHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCc
Confidence            69999999999999999999999999999999999974

>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: Saposin B
domain: Saposin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0019  Score=48.17  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=34.8

Q ss_pred             ccchhhhhHHHHHHHhhhchh-HHHHHHHhhhhccCCCCC
Q 016530          261 VCSACEMAVVWVQNQLKQKQT-KEKVLSYINELCDSLPNP  299 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t-~~~i~~~~~~~c~~~p~~  299 (388)
                      .|.+|+.+++.++..|+++.| ++.|...++++|+.+|..
T Consensus         3 ~C~~C~~~v~~v~~~l~~n~t~~~~I~~~l~~~C~~lp~~   42 (78)
T d1n69a_           3 VCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPG   42 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGCTT
T ss_pred             chHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhCChH
Confidence            699999999999999998877 566999999999999854

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0012  Score=48.98  Aligned_cols=34  Identities=18%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             eeecchhhhhhhhhhhHHHHHhhCCCchhhhhhc
Q 016530          197 VVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQI  230 (388)
Q Consensus       197 ~~~~~~~~~~~~y~~~i~~~l~~~~~p~~~c~~~  230 (388)
                      .+.++|+.+|++|++.|+++|.++.+|+++|..+
T Consensus        40 ~~~~~C~~lv~~Y~~~ii~~l~~~~~P~~IC~~l   73 (74)
T d1l9la_          40 RWRDVCRNFMRRYQSRVIQGLVAGETAQQICEDL   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh
Confidence            3689999999999999999999999999999765

>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Saposin-like
superfamily: Saposin
family: NKL-like
domain: Granulysin, NKG5 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0031  Score=46.62  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             ccchhhhhHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 016530          261 VCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPN  298 (388)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~t~~~i~~~~~~~c~~~p~  298 (388)
                      +|..|+.+|+.++..+. +.|++.|...++++|+.+|.
T Consensus         3 ~c~tC~~vv~~ve~l~~-n~t~~~I~~~l~~~C~~lp~   39 (74)
T d1l9la_           3 DYRTCLTIVQKLKKMVD-KPTQRSVSNAATRVCRTGRS   39 (74)
T ss_dssp             HHHHHHHHHHHHHHHCS-SCCHHHHHHHHHHGGGSSCH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHhHHHHCCH
Confidence            59999999999998665 66899999999999999985