Citrus Sinensis ID: 016551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHccccEEccccccccEEEccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mesfssdmasyqtnvqsnaapqsgnyghynqssaytreqkrsedgynwrkygqkqvkgsenprsyfkctfpdcpmkkkversldGQITEIVYkgshnhpkptstrrssssqsmqhstcansdlsdqsvgplgnthtdsfsmqnesstsfgeddfveqgsptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrwrKYGQkvvkgnpnprsyykctttgcpvrkhverASHDMRAVITTYegkhnhdvpaargsgytltrplpntntgnvpvpirpsvtamashsnlsnysnslnntrfpsssgsqapyTAAMLQstgsygisgfakptgsymmnqtqqsdglfnrakdeprddlFLESFLNSNS
Flexible Loop (DISEMBL)
MESFSSDMASYQTNVQsnaapqsgnyghynqssaYTREQKRSEDGYNWRKYgqkqvkgsenprsyfKCTFPDCPMKKKVERSLDGQITEIvykgshnhpkptstrrssssqsMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrWRKYgqkvvkgnpnprsyykctttgcpvrkhveraSHDMRAVITtyegkhnhdvpaARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLesflnsns
Low Complexity Region (SEG)
MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPtstrrssssqsmqhstCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMAshsnlsnysnslnnTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Disordered region (IsUnstruct)
****************************************************************YFKCTFPDCPM*********GQITEIVY********************************************************************************************EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGK**************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************************YNWRKYGQK****SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE*******************VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH************************************************************************************************************LFL*SFL****
Disordered Region (DISEMBL)
************TNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYG********NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSH*************************DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTR*********PYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Disordered Region (DISPRO)
****************************************RSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN**************************************************************************************************REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH************************************************************************SYGISGFAKPTG***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q8S8P5	519	Probable WRKY transcripti	yes	no	0.860	0.641	0.605	1e-106
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.633	0.477	0.554	5e-74
Q9C5T3	309	Probable WRKY transcripti	no	no	0.470	0.588	0.588	5e-69
Q9XI90	514	Probable WRKY transcripti	no	no	0.586	0.441	0.544	6e-69
Q93WV0	557	Probable WRKY transcripti	no	no	0.599	0.416	0.535	3e-67
Q9FG77	687	Probable WRKY transcripti	no	no	0.599	0.337	0.498	3e-66
O22921	393	Probable WRKY transcripti	no	no	0.586	0.577	0.564	3e-64
O65590	568	Probable WRKY transcripti	no	no	0.604	0.411	0.509	5e-62
Q93WU7	423	Probable WRKY transcripti	no	no	0.521	0.477	0.543	6e-58
Q9SI37	487	WRKY transcription factor	no	no	0.635	0.505	0.450	7e-53

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/370 (60%), Positives = 261/370 (70%), Gaps = 37/370 (10%)

Query: 30  NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 88
           NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct: 170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query: 89  EIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL-------SDQSVGPLGNTHTDSFSM 141
           EIVYKGSHNHPKP STRRSSSS S  HS   N+ L       SDQ         +DSF M
Sbjct: 230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query: 142 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 198
           Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct: 290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query: 199 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 258
           RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct: 349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query: 259 ITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNN 318
           ITTYEGKHNHDVPAARGSGY   R   ++++    VPIRP+  A+A HSN          
Sbjct: 409 ITTYEGKHNHDVPAARGSGYATNRAPQDSSS----VPIRPA--AIAGHSNY--------- 453

Query: 319 TRFPSSSGSQAPYTAAMLQ----STGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPR 374
                ++ SQAPYT  ML     +TG +G +       S +  Q     G F+RAK+EP 
Sbjct: 454 -----TTSSQAPYTLQMLHNNNTNTGPFGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPN 508

Query: 375 DDL-FLESFL 383
           ++  F +SF+
Sbjct: 509 EETSFFDSFM 518

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  278 bits (711), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 142/256 (55%), Positives = 174/256 (67%), Gaps = 11/256 (4%)

Query: 40  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 99
           K ++DGYNWRKYGQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 247 KPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHE 306

Query: 100 KPTSTRRSSSSQSMQHSTCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVE 156
            P     ++ S       C +SD+++Q   S   L  +  D  + Q  ++    E    E
Sbjct: 307 LPQKRGNNNGS-------CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSE 359

Query: 157 QGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYR 216
           +       +G+  E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYR
Sbjct: 360 EVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYR 419

Query: 217 WRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 276
           WRKYGQKVVKGNP PRSYYKCTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S
Sbjct: 420 WRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTS 479

Query: 277 GYTLTRPLPNTNTGNV 292
            + L RP    NT  V
Sbjct: 480 SHQL-RPNNQHNTSTV 494

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 155/236 (65%), Gaps = 54/236 (22%)

Query: 40  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNH 98
           K S+DGYNWRKYGQKQVKGSENPRSYFKCT+P+C  KKKVE SL  GQ+ EIVYKGSHNH
Sbjct: 114 KTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH 173

Query: 99  PKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQG 158
           PKP ST+RSSS+    H   +N D                           G+D      
Sbjct: 174 PKPQSTKRSSSTAIAAHQNSSNGD---------------------------GKD------ 200

Query: 159 SPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWR 218
                 IG+D   E +AKRWK E +           V+EPR+VVQTTSDIDILDDGYRWR
Sbjct: 201 ------IGED---ETEAKRWKREEN-----------VKEPRVVVQTTSDIDILDDGYRWR 240

Query: 219 KYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 274
           KYGQKVVKGNPNPRSYYKCT TGC VRKHVERA  D ++VITTYEGKH H +P  R
Sbjct: 241 KYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  261 bits (667), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 135/248 (54%), Positives = 166/248 (66%), Gaps = 21/248 (8%)

Query: 40  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 99
           K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 226 KPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHE 285

Query: 100 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 159
            P +T+R +   +   +  + ++    S   LG +    F   + + T   + + V Q +
Sbjct: 286 PPQNTKRGNKDNTANINGSSINNNRGSSE--LGASQ---FQTNSSNKTKREQHEAVSQAT 340

Query: 160 PTSN---------------PIGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQ 203
            T +                + + DENEPD KR   E  I E       RTV EPRI+VQ
Sbjct: 341 TTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQ 400

Query: 204 TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYE 263
           TTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TTYE
Sbjct: 401 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 460

Query: 264 GKHNHDVP 271
           GKHNHD+P
Sbjct: 461 GKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 7/239 (2%)

Query: 42  SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 101
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct: 210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query: 102 TSTRRSSSSQSMQHSTC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 157
              RR+S   + Q        +++   ++  G    ++ +  +   E       DD  E 
Sbjct: 270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query: 158 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 217
            +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct: 330 AASNRN-KDEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query: 218 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 276
           RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S
Sbjct: 387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSS 445

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  253 bits (645), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 139/279 (49%), Positives = 165/279 (59%), Gaps = 47/279 (16%)

Query: 42  SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 101
           +EDGYNWRKYGQK VKGSE PRSY+KCT P+C +KKKVERS +G ITEI+YKG+HNH KP
Sbjct: 272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKP 331

Query: 102 TSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDF------- 154
              RRS                 D +   +   +T      NE++   G   F       
Sbjct: 332 PPNRRSGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSG 391

Query: 155 ---------VEQGSPT----SNPIGDDDENEPD--------------------------A 175
                     E G P     ++    +DE+E D                          +
Sbjct: 392 SIQAQTGGQYESGDPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESES 451

Query: 176 KRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 235
           KR K E     + G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYY
Sbjct: 452 KRRKLEAFAAEMSGS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYY 510

Query: 236 KCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 274
           KCT  GC VRKHVERASHD+++VITTYEGKHNHDVPAAR
Sbjct: 511 KCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  246 bits (627), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/234 (56%), Positives = 160/234 (68%), Gaps = 7/234 (2%)

Query: 40  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 99
           + S DGY WRKYGQKQVK SENPRSYFKCT+PDC  KK VE + DGQITEI+YKG HNHP
Sbjct: 163 RNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHP 222

Query: 100 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 159
           KP  T+R S S S+  S       +  SV  +   H  S      SS SF   D  ++  
Sbjct: 223 KPEFTKRPSQS-SLPSSVNGRRLFNPASV--VSEPHDQS----ENSSISFDYSDLEQKSF 275

Query: 160 PTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRK 219
            +     D++E +P+ KR K E + EG+    S+ V+EPR+VVQT SDID+L DG+RWRK
Sbjct: 276 KSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRK 335

Query: 220 YGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 273
           YGQKVVKGN NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct: 336 YGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  238 bits (608), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 136/267 (50%), Positives = 165/267 (61%), Gaps = 33/267 (12%)

Query: 42  SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 101
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C  KKKVERS +G I EI+Y G H H KP
Sbjct: 177 ADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKP 236

Query: 102 TSTRRSS-----SSQSMQ-----HSTCANSDLSDQSVGPLG-----NTHTDSFSMQNESS 146
              RRS      + Q MQ     +   A ++ + +   P+       +H+ S  +QN  +
Sbjct: 237 PPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQN-GT 295

Query: 147 TSFG--------------EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGS 192
             FG              EDD     S +    G+ +E+E  +KR K E       G+ +
Sbjct: 296 HQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-T 352

Query: 193 RTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 252
           R  REPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS
Sbjct: 353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERAS 412

Query: 253 HDMRAVITTYEGKHNHDVPAARGSGYT 279
            D ++V+TTY GKH H VPAAR S + 
Sbjct: 413 DDFKSVLTTYIGKHTHVVPAARNSSHV 439

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  224 bits (572), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 153/232 (65%), Gaps = 30/232 (12%)

Query: 40  KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 99
           K ++DGYNWRKYGQK +KG E PRSY+KCT  +CP+KKKVERS DGQIT+I+YKG H+H 
Sbjct: 164 KPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHE 223

Query: 100 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 159
           +P + R      S +             VG  G           ESS    +D    +  
Sbjct: 224 RPQNRRGGGGRDSTE-------------VGGAGQ--------MMESS----DDSGYRKDH 258

Query: 160 PTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRK 219
              +   +DDE+ P +K  +    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRK
Sbjct: 259 DDDDDDDEDDEDLPASKIRR----IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRK 313

Query: 220 YGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVP 271
           YGQKVVKGNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVP
Sbjct: 314 YGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  208 bits (529), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/282 (45%), Positives = 162/282 (57%), Gaps = 36/282 (12%)

Query: 22  QSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVER 81
           QSG+ G    +S + RE K  EDGYNWRKYGQK VKG+E  RSY++CT P+C  KK++ER
Sbjct: 95  QSGSEG----NSPFIRE-KVMEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLER 149

Query: 82  SLDGQITEIVYKGSHNHPKPTS--------------TRRSSSSQ-----SMQHSTCANS- 121
           S  GQ+ + VY G H+HPKP +              T  S   Q     S+ +  C  S 
Sbjct: 150 SAGGQVVDTVYFGEHDHPKPLAGAVPINQDKRSDVFTAVSKGEQRIDIVSLIYKLCIVSY 209

Query: 122 DL------SDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD---DENE 172
           D+      S  SV  L  T           S     DD     S +S   GD+   D N 
Sbjct: 210 DIMFVEKTSGSSVQTLRQTEPPKIHGGLHVSVIPPADDVKTDISQSSRITGDNTHKDYNS 269

Query: 173 PDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 232
           P AKR K   +IE  +    R+  + RIVV T +  DI++DGYRWRKYGQK VKG+P PR
Sbjct: 270 PTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 327

Query: 233 SYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 274
           SYY+C++ GCPV+KHVER+SHD + +ITTYEGKH+HD+P  R
Sbjct: 328 SYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGR 369

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
409923417	587	WRKY transcription factor 17 [Dimocarpus	0.981	0.647	0.777	1e-170
255571505	558	transcription factor, putative [Ricinus	0.937	0.650	0.664	1e-140
224140533	534	predicted protein [Populus trichocarpa]	0.961	0.696	0.652	1e-136
259121399	579	WRKY transcription factor 17 [(Populus t	0.961	0.642	0.650	1e-134
225439574	552	PREDICTED: probable WRKY transcription f	0.935	0.655	0.626	1e-126
297735598	513	unnamed protein product [Vitis vinifera]	0.937	0.707	0.625	1e-126
225434421	603	PREDICTED: probable WRKY transcription f	0.974	0.625	0.611	1e-124
183979108	603	DNA-binding protein [Vitis thunbergii]	0.974	0.625	0.611	1e-123
3420906	515	zinc finger protein [Pimpinella brachyca	0.932	0.700	0.623	1e-123
302399143	520	WRKY domain class transcription factor [	0.857	0.638	0.666	1e-122

>gi|409923417|gb|AEO31478.2| WRKY transcription factor 17 [Dimocarpus longan]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 301/387 (77%), Positives = 330/387 (85%), Gaps = 7/387 (1%)

Query: 2   ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 61
           +SFSS+MAS+Q+N+QSN APQSG Y HY+QS+ YTREQKR+EDGYNWRKYGQKQVKGSEN
Sbjct: 205 QSFSSEMASFQSNMQSNTAPQSG-YSHYSQSTQYTREQKRAEDGYNWRKYGQKQVKGSEN 263

Query: 62  PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANS 121
           PRSY+KCT+PDCP KKKVERSLDGQITEIVYKGSHNHPKP STRRSSS  SMQ STCANS
Sbjct: 264 PRSYYKCTYPDCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS-HSMQPSTCANS 322

Query: 122 DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE 181
           ++SDQSVG L N   +SFSMQ +SS SFGED + +QGSPTSNP  DDDENEP+AKRWKGE
Sbjct: 323 EISDQSVGALANAQNESFSMQGDSSASFGEDSY-DQGSPTSNPGADDDENEPEAKRWKGE 381

Query: 182 NDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTG 241
           NDIEG IGTGSR VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT G
Sbjct: 382 NDIEGAIGTGSRXVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIG 441

Query: 242 CPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPN-TNTGNVPVPIRPSV 300
           CPVRKHVE ASHD RAVITTYEGKHNHDVPAARGSGYTLTRP PN   T  VP+PIRPSV
Sbjct: 442 CPVRKHVEXASHDTRAVITTYEGKHNHDVPAARGSGYTLTRPSPNPPTTSTVPIPIRPSV 501

Query: 301 TAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQ-STGSYGISGFAKPTGSYMMNQT 359
           +AMA+HS+ S+YSNSL N R P+SS SQAP+T+ M Q S          +P  SY MNQ 
Sbjct: 502 SAMANHSHPSSYSNSLQNARLPTSS-SQAPFTSEMPQSSGSFGFSGFGGRPNNSY-MNQI 559

Query: 360 QQSDGLFNRAKDEPRDDLFLESFLNSN 386
           QQSD +F RAK+EPR+D F ESFLNSN
Sbjct: 560 QQSDNVFFRAKEEPREDSFFESFLNSN 586

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571505|ref|XP_002526700.1| transcription factor, putative [Ricinus communis] gi|223534000|gb|EEF35722.1| transcription factor, putative [Ricinus communis]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/385 (66%), Positives = 309/385 (80%), Gaps = 22/385 (5%)

Query: 1   MESFSSDMASYQTNVQSNA-APQ-SGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKG 58
           ++SFSS+MA  Q+++Q+NA APQ   +Y HY+Q ++Y REQ+RS+DGYNWRKYGQKQVKG
Sbjct: 193 VQSFSSEMAPLQSSMQTNAVAPQPQPSYNHYSQPASYMREQRRSDDGYNWRKYGQKQVKG 252

Query: 59  SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTC 118
           SENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPKP +    SSSQ +Q +  
Sbjct: 253 SENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQA---RSSSQLIQLAAG 309

Query: 119 ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRW 178
              ++SDQS  P+     +S +MQ +SS S G+D+F +Q SP SN  G++DENEP+AKR+
Sbjct: 310 GTQEISDQSFAPV-----ESVTMQEDSSLSIGDDEF-DQSSPISNSGGNEDENEPEAKRF 363

Query: 179 KGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 238
           KG+N+ E ++  GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT
Sbjct: 364 KGQNENESILAAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 423

Query: 239 TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRP 298
           + GCPVRKHVERASHD RAVITTYEGKHNHDVPAARGSGY   R LP     ++P+PIRP
Sbjct: 424 SIGCPVRKHVERASHDTRAVITTYEGKHNHDVPAARGSGYASNR-LPVNANSSMPIPIRP 482

Query: 299 SVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQ 358
           SVTA       +NYSNSLN+TR   SSG+QAP+T  MLQ TG+ G S F KP+ SY MNQ
Sbjct: 483 SVTAN------TNYSNSLNSTR---SSGNQAPFTLQMLQGTGNIGFSNFGKPSASY-MNQ 532

Query: 359 TQQSDGLFNRAKDEPRDDLFLESFL 383
           TQ ++ +F+ AK+EP+DD FL+SFL
Sbjct: 533 TQYTENVFSGAKEEPKDDSFLDSFL 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140533|ref|XP_002323637.1| predicted protein [Populus trichocarpa] gi|222868267|gb|EEF05398.1| predicted protein [Populus trichocarpa]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/383 (65%), Positives = 298/383 (77%), Gaps = 11/383 (2%)

Query: 2   ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 61
           +SFSS++   Q N+QS       ++  YNQS+ Y RE KRS+DGYNWRKYGQKQVKGSEN
Sbjct: 163 QSFSSELVPLQANMQSVNTAAQPSFNQYNQSAHYMRENKRSDDGYNWRKYGQKQVKGSEN 222

Query: 62  PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANS 121
           PRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSSQ +Q S  A+S
Sbjct: 223 PRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSSQLVQPSGGASS 281

Query: 122 DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE 181
           ++SDQS+ P+     +S  MQ +SS S GED+F +  S  S    +D+ NEPDAKRW+G+
Sbjct: 282 EISDQSIAPI-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNANEPDAKRWQGQ 334

Query: 182 NDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTG 241
           N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ G
Sbjct: 335 NENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSVG 394

Query: 242 CPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVT 301
           CPVRKHVERAS D+RAVITTYEGKHNHDVPAARGSGY    P    +T N P+PIRPSV 
Sbjct: 395 CPVRKHVERASQDLRAVITTYEGKHNHDVPAARGSGYMNKAPSIANSTANAPIPIRPSV- 453

Query: 302 AMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQ 361
            MA+HSN ++Y NSL++TR   +SGSQAP+T  MLQ  GS+  S F K  G+Y MNQTQ 
Sbjct: 454 -MANHSNQTSYPNSLHSTRSLPASGSQAPFTLEMLQGQGSFEYSSFGKQNGTY-MNQTQY 511

Query: 362 SDGLFNRAKDEPRDDLFLESFLN 384
           S+G+F RAK+EP++D F + FLN
Sbjct: 512 SEGVFPRAKEEPKNDSFFDPFLN 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121399|gb|ACV92019.1| WRKY transcription factor 17 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/383 (65%), Positives = 295/383 (77%), Gaps = 11/383 (2%)

Query: 2   ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 61
           +SFSS++   Q N+QS       ++  YNQS+ Y RE K+S+DGYNWRKYGQKQVKGSEN
Sbjct: 208 QSFSSELGPLQANMQSVNTAAQPSFNQYNQSAHYMRENKKSDDGYNWRKYGQKQVKGSEN 267

Query: 62  PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANS 121
           PRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSSQ +Q S  A+S
Sbjct: 268 PRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSSQLVQPSGGASS 326

Query: 122 DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE 181
           ++SDQSV P+     +S  MQ +SS S GED+F +  S  S    +D+ NEPDAKRW+G+
Sbjct: 327 EISDQSVAPV-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNANEPDAKRWQGQ 379

Query: 182 NDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTG 241
           N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ G
Sbjct: 380 NENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSVG 439

Query: 242 CPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVT 301
           CPVRKHV RAS D+RAVITTYEGKHNHDVPAARGSGY    P     T N P+PIRPSV 
Sbjct: 440 CPVRKHVGRASQDLRAVITTYEGKHNHDVPAARGSGYMNKAPSITNITANAPIPIRPSV- 498

Query: 302 AMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQ 361
            MA+HSN ++Y NSL+ TR   +SG QAP+T  MLQS GS+  S F K  G+Y MNQTQ 
Sbjct: 499 -MANHSNQTSYPNSLHGTRSLPASGIQAPFTLEMLQSQGSFEYSSFGKQNGTY-MNQTQY 556

Query: 362 SDGLFNRAKDEPRDDLFLESFLN 384
           S+G+F RAK+EP++D F + FLN
Sbjct: 557 SEGVFPRAKEEPKNDSFFDPFLN 579

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439574|ref|XP_002264974.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/383 (62%), Positives = 287/383 (74%), Gaps = 21/383 (5%)

Query: 1   MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSE 60
           ++S S ++AS QTN+QSN  PQSG   H   S +Y REQ+RS+DGYNWRKYGQKQVKGSE
Sbjct: 189 LQSLSPEIASIQTNMQSNNIPQSGRSHHAQPSESY-REQRRSDDGYNWRKYGQKQVKGSE 247

Query: 61  NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCAN 120
           NPRSY+KCTFP+CP KKKVERSL+G ITEIVYKG+H+HPKP   R SS S     +   N
Sbjct: 248 NPRSYYKCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSAST---N 304

Query: 121 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 180
           S++S  S+ P+GN + DS +    SS S GEDDF +Q SP S   G DDENE +AKRWKG
Sbjct: 305 SEISGHSM-PIGNPYMDSMTTSENSSVSIGEDDF-DQNSPMSR-SGGDDENEREAKRWKG 361

Query: 181 ENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTT 240
           E + E +  + SRTV+EPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ 
Sbjct: 362 EYENEAISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSI 421

Query: 241 GCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRPS 299
           GCPVRKHVER+S D+RAV+TTYEGKHNHDVPAARGSG + +T+PLPN +T  VP PIRPS
Sbjct: 422 GCPVRKHVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPS 481

Query: 300 VTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQT 359
           V  M +HSN +  +N+   TR P +S SQAP+T  MLQS GS+G SGF +          
Sbjct: 482 V--MTNHSNYTT-TNANPQTR-PPTSASQAPFTLEMLQSPGSFGFSGFGR---------M 528

Query: 360 QQSDGLFNRAKDEPRDDLFLESF 382
              DG+F+R K+EP+DDLF   F
Sbjct: 529 SHPDGVFSRTKEEPKDDLFQSFF 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735598|emb|CBI18092.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/384 (62%), Positives = 287/384 (74%), Gaps = 21/384 (5%)

Query: 1   MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSE 60
           ++S S ++AS QTN+QSN  PQSG   H   S +Y REQ+RS+DGYNWRKYGQKQVKGSE
Sbjct: 150 LQSLSPEIASIQTNMQSNNIPQSGRSHHAQPSESY-REQRRSDDGYNWRKYGQKQVKGSE 208

Query: 61  NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCAN 120
           NPRSY+KCTFP+CP KKKVERSL+G ITEIVYKG+H+HPKP   R SS S     +   N
Sbjct: 209 NPRSYYKCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSAST---N 265

Query: 121 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 180
           S++S  S+ P+GN + DS +    SS S GEDDF +Q SP S   G DDENE +AKRWKG
Sbjct: 266 SEISGHSM-PIGNPYMDSMTTSENSSVSIGEDDF-DQNSPMSR-SGGDDENEREAKRWKG 322

Query: 181 ENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTT 240
           E + E +  + SRTV+EPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ 
Sbjct: 323 EYENEAISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSI 382

Query: 241 GCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRPS 299
           GCPVRKHVER+S D+RAV+TTYEGKHNHDVPAARGSG + +T+PLPN +T  VP PIRPS
Sbjct: 383 GCPVRKHVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPS 442

Query: 300 VTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQT 359
           V  M +HSN +  +N+   TR P +S SQAP+T  MLQS GS+G SGF +          
Sbjct: 443 V--MTNHSNYTT-TNANPQTR-PPTSASQAPFTLEMLQSPGSFGFSGFGR---------M 489

Query: 360 QQSDGLFNRAKDEPRDDLFLESFL 383
              DG+F+R K+EP+DDLF   F 
Sbjct: 490 SHPDGVFSRTKEEPKDDLFQSFFC 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434421|ref|XP_002272040.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/396 (61%), Positives = 288/396 (72%), Gaps = 19/396 (4%)

Query: 2   ESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKG 58
           +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWRKYGQKQVKG
Sbjct: 212 QSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWRKYGQKQVKG 271

Query: 59  SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQS--MQHS 116
           SENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS S S  +Q S
Sbjct: 272 SENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSLSSSQTIQAS 331

Query: 117 TCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD-DENEPDA 175
              N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GDD DE+EP+A
Sbjct: 332 NPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGDDFDEDEPEA 390

Query: 176 KRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 235
           KRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY
Sbjct: 391 KRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 450

Query: 236 KCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLP-------NT 287
           KCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG +++ RPLP        T
Sbjct: 451 KCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPLPDTTAAAT 510

Query: 288 NTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGF 347
              N+P+ IRPS+    +H   ++ +N L + R P+S    AP+T  MLQS   +G S F
Sbjct: 511 TNNNMPMAIRPSI---MTHLPNNSTTNPLRHVRHPTSEAQAAPFTLEMLQSPDGFGFSSF 567

Query: 348 AKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFL 383
                +Y MNQ Q  D +F+R K+EPRDD+  ES L
Sbjct: 568 GNSMATY-MNQPQHQDNVFSRTKEEPRDDMLFESLL 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183979108|emb|CAP08303.1| DNA-binding protein [Vitis thunbergii]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/396 (61%), Positives = 287/396 (72%), Gaps = 19/396 (4%)

Query: 2   ESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKG 58
           +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWRKYGQKQVKG
Sbjct: 212 QSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWRKYGQKQVKG 271

Query: 59  SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQS--MQHS 116
           SENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS S S  +Q S
Sbjct: 272 SENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSLSSSQTIQAS 331

Query: 117 TCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD-DENEPDA 175
              N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GDD DE+EP+A
Sbjct: 332 NPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGDDFDEDEPEA 390

Query: 176 KRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 235
           KRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY
Sbjct: 391 KRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 450

Query: 236 KCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLP-------NT 287
           KCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG +++ RPLP        T
Sbjct: 451 KCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPLPDTTAAAT 510

Query: 288 NTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGF 347
              N+P+ IRPS     +H   ++ +N L + R P+S    AP+T  MLQS   +G S F
Sbjct: 511 TNNNMPMAIRPST---MTHLPNNSTTNPLRHVRHPTSEAQAAPFTLEMLQSPDGFGFSNF 567

Query: 348 AKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFL 383
                +Y MNQ Q  D +F+R K+EPRDD+  ES L
Sbjct: 568 GNSMATY-MNQPQHQDNVFSRTKEEPRDDMLFESLL 602

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3420906|gb|AAC31956.1| zinc finger protein [Pimpinella brachycarpa]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/385 (62%), Positives = 271/385 (70%), Gaps = 24/385 (6%)

Query: 4   FSSDMASYQTNVQSNAA---PQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSE 60
            S +M   Q N+QSNAA     S NY   +QSS   R+Q + +DGYNWRKYGQKQVKGSE
Sbjct: 149 LSPEMTMNQANMQSNAAVLQSNSINYAQSSQSSQTNRDQSKLDDGYNWRKYGQKQVKGSE 208

Query: 61  NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCAN 120
           NPRSY+KCT+ +CP KKKVE + DG ITEIVYKG+HNHPKP ST+RSSS QS Q+S    
Sbjct: 209 NPRSYYKCTYLNCPTKKKVETTFDGHITEIVYKGNHNHPKPQSTKRSSS-QSYQNSIPTM 267

Query: 121 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 180
            + S      L N H +  +    SS SFGEDD  EQGS   N  GDDDENEPDAKRWKG
Sbjct: 268 PETS-----LLENGHLEPVTTPENSSLSFGEDDLFEQGS--MNKQGDDDENEPDAKRWKG 320

Query: 181 E-NDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT 239
           E  + E +   GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 
Sbjct: 321 EYENNETMSSLGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTQ 380

Query: 240 TGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRP 298
            GCPVRKHVERASHD+RAVITTYEGKHNHDVPA RGSG Y + RP  NT T + P  IRP
Sbjct: 381 VGCPVRKHVERASHDLRAVITTYEGKHNHDVPAPRGSGSYAVNRPSDNTATTSAPTAIRP 440

Query: 299 SVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQ 358
           +          +NY N L NTR   ++G QAP+T  MLQ   SY  SGF   T +Y +NQ
Sbjct: 441 T----------TNYLNPLQNTRAQPANG-QAPFTLEMLQRPRSYEFSGFGNSTNTYTINQ 489

Query: 359 TQQSDGLFNRAKDEPRDDLFLESFL 383
            QQ+ G F+ AKDEP  D F +SFL
Sbjct: 490 NQQASGQFSTAKDEPDVDSFFDSFL 514

Source: Pimpinella brachycarpa

Species: Pimpinella brachycarpa

Genus: Pimpinella

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399143|gb|ADL36866.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/348 (66%), Positives = 272/348 (78%), Gaps = 16/348 (4%)

Query: 6   SDMASYQTNVQSNA---APQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENP 62
           S+    + N QSN    AP+S +Y H  QSS Y REQK S+DG+NWRKYGQKQVKGSENP
Sbjct: 183 SEFEPIEANTQSNGLNGAPKS-DYLHSTQSSQYGREQK-SDDGFNWRKYGQKQVKGSENP 240

Query: 63  RSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSD 122
           RSY+KCTFP+CP KKKVERSLDGQIT+IVYKGSHNHPKP STRRSSS+ ++Q S+     
Sbjct: 241 RSYYKCTFPNCPTKKKVERSLDGQITQIVYKGSHNHPKPQSTRRSSSN-AIQGSSYV--- 296

Query: 123 LSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGEN 182
           +SDQSV  L N   +S ++Q +SSTS GED+F EQ SP SN  G +DENEP+AKRWKGEN
Sbjct: 297 ISDQSVPTLSNPKVESITLQEDSSTSMGEDEF-EQNSPISNSGGAEDENEPEAKRWKGEN 355

Query: 183 -DIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTG 241
            + +  + +GSR V+EPRIVVQTTS+IDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ G
Sbjct: 356 ANDQAYVSSGSRIVKEPRIVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSVG 415

Query: 242 CPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG--YTLTRPLPNTNTGNVPVPIRPS 299
           CPVRKHVERASHD +AVITTYEGKHNHDVPAARGSG     +RP  + ++ NV + +RP 
Sbjct: 416 CPVRKHVERASHDTKAVITTYEGKHNHDVPAARGSGNYSNASRPAADNSSNNVSMAVRP- 474

Query: 300 VTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGF 347
             A+ +HSNL  Y NSL NTR PS++ SQ P+T  MLQS GSYG S F
Sbjct: 475 -LALPNHSNL-RYLNSLQNTRQPSTTESQPPFTLKMLQSEGSYGFSEF 520

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.870	0.649	0.557	6.6e-97
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.728	0.549	0.506	4.8e-71
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.395	0.222	0.561	8.1e-69
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.718	0.540	0.493	1.9e-67
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.273	0.250	0.722	5.4e-65
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.669	0.659	0.498	8.8e-63
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.599	0.416	0.518	3e-62
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.322	0.220	0.625	1.4e-59
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.312	0.248	0.539	5.4e-55
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.645	0.582	0.436	2.5e-49

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 204/366 (55%), Positives = 241/366 (65%)

Query:    30 NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 88
             NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct:   170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query:    89 EIVYKGSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQ----SVGPLGNT--H-TDSFSM 141
             EIVYKGSHNHPKP                  N+ L       S  P  N   H +DSF M
Sbjct:   230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query:   142 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 198
             Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct:   290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query:   199 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 258
             RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct:   349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query:   259 ITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMAXXXXXXXXXXXXXX 318
             ITTYEGKHNHDVPAARGSGY   R  P  ++    VPIRP+  A+A              
Sbjct:   409 ITTYEGKHNHDVPAARGSGYATNRA-PQDSSS---VPIRPA--AIAGHSNYTTSSQAPYT 462

Query:   319 TRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDL- 377
              +   ++ +          +TG +G +       S +  Q     G F+RAK+EP ++  
Sbjct:   463 LQMLHNNNT----------NTGPFGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPNEETS 512

Query:   378 FLESFL 383
             F +SF+
Sbjct:   513 FFDSFM 518

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 150/296 (50%), Positives = 185/296 (62%)

Query:     3 SFSSDMASY-QTNVQSNAAPQ--SGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGS 59
             SFSS   S  + +VQ  +  Q  +     +   S      K ++DGYNWRKYGQKQVKGS
Sbjct:   207 SFSSAPRSQIRASVQETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGS 266

Query:    60 ENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXXXXXXXXCA 119
             + PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH  P                C 
Sbjct:   267 DFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQKRGNNNGS-------CK 319

Query:   120 NSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAK 176
             +SD+++Q   S   L  +  D  + Q  ++    E    E+       +G+  E+EPD K
Sbjct:   320 SSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETSVGERHEDEPDPK 379

Query:   177 RWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYK 236
             R   E  +   + +  RTV EPRI+VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYK
Sbjct:   380 RRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYK 439

Query:   237 CTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNV 292
             CTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S + L RP    NT  V
Sbjct:   440 CTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQL-RPNNQHNTSTV 494

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 8.1e-69, Sum P(3) = 8.1e-69
 Identities = 91/162 (56%), Positives = 114/162 (70%)

Query:   137 DSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD--------DENEPDAKRWKGENDIEGVI 188
             D   + + SST   ++D  ++G+  S  +G D        + +E ++KR K E     + 
Sbjct:   405 DPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRKLEAFAAEMS 464

Query:   189 GTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHV 248
             G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC VRKHV
Sbjct:   465 GS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHV 523

Query:   249 ERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTG 290
             ERASHD+++VITTYEGKHNHDVPAAR S +       N N+G
Sbjct:   524 ERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDSGNGNSG 565

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 143/290 (49%), Positives = 181/290 (62%)

Query:     1 MESFSSDMASYQTNVQSNAAPQSGNYGHY-NQSSAYTREQKRSEDGYNWRKYGQKQVKGS 59
             ++SFSS  A   T+    A  ++ +     ++S       K ++DGYNWRKYGQKQVKGS
Sbjct:   186 VQSFSSGQAQIPTSAPLPAQRETSDVTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGS 245

Query:    60 ENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXXXXXXXXCA 119
             E PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH  P                 +
Sbjct:   246 EFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQNTKRGNKDNTANINGSS 305

Query:   120 -NSDLSDQSVGPLG---NTHTDSFSMQNESSTSFGEDDFVEQ---GSPTSN---PIGDDD 169
              N++     +G      N+   +   Q+E+ +     + + +   G    N    + + D
Sbjct:   306 INNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGETDVREKD 365

Query:   170 ENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 228
             ENEPD KR   E  I E       RTV EPRI+VQTTS++D+LDDGYRWRKYGQKVVKGN
Sbjct:   366 ENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGN 425

Query:   229 PNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGY 278
             P PRSYYKCTT GC VRKHVERA+ D +AV+TTYEGKHNHD+PAA+ S +
Sbjct:   426 PYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSH 475

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 78/108 (72%), Positives = 88/108 (81%)

Query:   167 DDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 226
             DDDE++ D    K    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRKYGQKVVK
Sbjct:   263 DDDEDDEDLPASKIRR-IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVK 320

Query:   227 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 274
             GNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVPAAR
Sbjct:   321 GNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAAR 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 135/271 (49%), Positives = 165/271 (60%)

Query:     7 DMASYQTNVQSNAAPQSGN--YGHYNQSS--AYTREQKRSEDGYNWRKYGQKQVKGSENP 62
             D    Q  + +  A Q+ N  +G   Q    AY    + S DGY WRKYGQKQVK SENP
Sbjct:   127 DHEKKQEMIPNEIATQNNNQSFGTERQIKIPAYM-VSRNSNDGYGWRKYGQKQVKKSENP 185

Query:    63 RSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXXXXXXXXCANSD 122
             RSYFKCT+PDC  KK VE + DGQITEI+YKG HNHPKP                  N  
Sbjct:   186 RSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKRPSQSSLPSS---VNGR 242

Query:   123 LSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGEN 182
                     +   H  S   +N SS SF   D  ++   +     D++E +P+ KR K E 
Sbjct:   243 RLFNPASVVSEPHDQS---EN-SSISFDYSDLEQKSFKSEYGEIDEEEEQPEMKRMKREG 298

Query:   183 DIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGC 242
             + EG+    S+ V+EPR+VVQT SDID+L DG+RWRKYGQKVVKGN NPRSYYKCT  GC
Sbjct:   299 EDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGC 358

Query:   243 PVRKHVERASHDMRAVITTYEGKHNHDVPAA 273
              V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct:   359 GVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 124/239 (51%), Positives = 160/239 (66%)

Query:    42 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 101
             ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct:   210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query:   102 XXXXXXXXXXXXXXXXC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 157
                                  +++   ++  G    ++ +  +   E       DD  E 
Sbjct:   270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query:   158 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 217
              +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct:   330 AASNRNK-DEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query:   218 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 276
             RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S
Sbjct:   387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSS 445

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
 Identities = 80/128 (62%), Positives = 92/128 (71%)

Query:   151 EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDI 210
             EDD     S +    G+ +E+E  +KR K E       G+ +R  REPR+VVQTTSDIDI
Sbjct:   314 EDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-TRASREPRVVVQTTSDIDI 370

Query:   211 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDV 270
             LDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS D ++V+TTY GKH H V
Sbjct:   371 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVV 430

Query:   271 PAARGSGY 278
             PAAR S +
Sbjct:   431 PAARNSSH 438

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 68/126 (53%), Positives = 87/126 (69%)

Query:   152 DDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDI 208
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +  
Sbjct:   246 DDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLF 303

Query:   209 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH 268
             DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +ITTYEGKH+H
Sbjct:   304 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDH 363

Query:   269 DVPAAR 274
             D+P  R
Sbjct:   364 DMPPGR 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 117/268 (43%), Positives = 151/268 (56%)

Query:    29 YNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 88
             + +S   T ++  S DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERS++GQ++
Sbjct:   152 FTESETSTGDRS-SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVS 210

Query:    89 EIVYKGSHNHPKPX--XXXXXXXXXXXXXXXCANSDLSDQSVG--PLGNTHTDSFSMQNE 144
             EIVY+G HNH KP                     S  S+ S+G  P  N ++  ++ Q+ 
Sbjct:   211 EIVYQGEHNHSKPSCPLPRRASSSISSGFQKPPKSIASEGSMGQDPNNNLYSPLWNNQSN 270

Query:   145 SSTSFGEDDFVEQG---SPTSNPIGDDDENEPDAKR--WKGENDIEGVIGTGSRTVREPR 199
              ST     + + +G   +P    +     + P       K     EG +   SR+ R   
Sbjct:   271 DSTQ-NRTEKMSEGCVITPFEFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSRSKRRKN 329

Query:   200 I-------VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 252
                     V Q + + D L+DG+RWRKYGQKVV GN  PRSYY+CT+  C  RKHVERAS
Sbjct:   330 EKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERAS 389

Query:   253 HDMRAVITTYEGKHNHDVPAARGSGYTL 280
              D RA ITTYEGKHNH +  +  S  TL
Sbjct:   390 DDPRAFITTYEGKHNHHLLLSPPSSSTL 417

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8P5	WRK33_ARATH	No assigned EC number	0.6054	0.8604	0.6416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00161228	hypothetical protein (534 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II1481	hypothetical protein (372 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-36
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-34
smart00774	59	smart00774, WRKY, DNA binding domain	4e-34
smart00774	59	smart00774, WRKY, DNA binding domain	3e-30

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  126 bits (319), Expect = 2e-36
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 211 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD 269
           LDDGY WRKYGQK VKG+P PRSYY+CT+ GCPV+K VER+S D + V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  121 bits (305), Expect = 2e-34
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 42  SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 100
            +DGYNWRKYGQK VKGS  PRSY++CT P CP+KK+VERS  D QI EI Y+G HNHPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  120 bits (303), Expect = 4e-34
 Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 211 LDDGYRWRKYGQKVVKGNPNPRSYYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNH 268
           LDDGY+WRKYGQKV+KG+P PRSYY+CT T GCP +K V+R+  D   V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  109 bits (276), Expect = 3e-30
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 43 EDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH 98
          +DGY WRKYGQK +KGS  PRSY++CT+   CP KK+V+RS  D  + E+ Y+G H H
Sbjct: 2  DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.28
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	85.78

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2.4e-31  Score=205.11  Aligned_cols=59  Identities=66%  Similarity=1.301  Sum_probs=52.5

Q ss_pred             CCCCchhhhccccccCCCCCCcccccccCCCCCchhhhhhhcCCCCEEEEEEecccCCC
Q 016551          211 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD  269 (387)
Q Consensus       211 ~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~  269 (387)
                      +||||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=4.3e-30  Score=197.99  Aligned_cols=58  Identities=64%  Similarity=1.263  Sum_probs=56.4

Q ss_pred             CCCCchhhhccccccCCCCCCcccccccC-CCCCchhhhhhhcCCCCEEEEEEecccCC
Q 016551          211 LDDGYRWRKYGQKVVKGNPNPRSYYKCTT-TGCPVRKHVERASHDMRAVITTYEGKHNH  268 (387)
Q Consensus       211 ~dDGy~WRKYGQK~ikgn~~pRsYYrCt~-~gC~arK~Vqr~~~D~~~~~ttY~G~HnH  268 (387)
                      ++|||.|||||||.|+|+++||+||||+. ++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999998 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=5.1e-30  Score=197.80  Aligned_cols=59  Identities=61%  Similarity=1.217  Sum_probs=50.6

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccCCCCCCccccceeecc-CCceeeeeecccCCCCC
Q 016551           42 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK  100 (387)
Q Consensus        42 ~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~  100 (387)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999999999999999987 78899999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=8.1e-29  Score=190.91  Aligned_cols=57  Identities=56%  Similarity=1.154  Sum_probs=54.8

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccCCC-CCCccccceeecc-CCceeeeeecccCCC
Q 016551           42 SEDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH   98 (387)
Q Consensus        42 ~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~-~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH   98 (387)
                      .+|||.|||||||.|+|+++||+||||++ ++|+|+|+||++. |+.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 9999999999996 789999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.28  E-value=0.14  Score=37.63  Aligned_cols=49  Identities=24%  Similarity=0.555  Sum_probs=24.3

Q ss_pred             cCCCCccccccCcccCCCCCCCCCcccCCCC---CCccccceeeccCCceeeeeecccCCC
Q 016551           41 RSEDGYNWRKYGQKQVKGSENPRSYFKCTFP---DCPMKKKVERSLDGQITEIVYKGSHNH   98 (387)
Q Consensus        41 ~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~---~C~akK~Vqr~~dg~~~~i~Y~G~HnH   98 (387)
                      ..-|||.-++....      ..+.|++|+..   +|+|+=.+. ..++.  .+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~-~~~~~--~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD-AGDGR--VVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE---TTE--EEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE-CCCCE--EEECCCccCC
Confidence            45788887765544      34579999874   799977766 22322  3445599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.78  E-value=0.19  Score=36.88  Aligned_cols=48  Identities=31%  Similarity=0.712  Sum_probs=24.4

Q ss_pred             CCCCchhhhccccccCCCCCCcccccccC---CCCCchhhhhhhcCCCCEEEEEEecccCC
Q 016551          211 LDDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNH  268 (387)
Q Consensus       211 ~dDGy~WRKYGQK~ikgn~~pRsYYrCt~---~gC~arK~Vqr~~~D~~~~~ttY~G~HnH  268 (387)
                      +-|||.-++....      ....|++|+.   .+|+|+=.+.  .++ ..+ +...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~~-~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GRV-VRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TEE-EE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CEE-EECCCccCC
Confidence            3489987776555      4568999994   3899988776  223 333 455599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	387
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-31
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-27

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 202 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 261
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 262 YEGKHNHDVPA 272
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 199 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 258
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 259 ITTYEGKHNHDVP 271
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-49
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-26
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-46
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-27

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  159 bits (404), Expect = 4e-49
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query: 196 REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDM 255
                 VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 256 RAVITTYEGKHNHDVPA 272
           +AV+TTYEGKHNHD+PA
Sbjct: 62  KAVVTTYEGKHNHDLPA 78

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  100 bits (252), Expect = 1e-26
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 43  EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 101
           +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  152 bits (385), Expect = 3e-46
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 199 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 258
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 259 ITTYEGKHNHDVPAA 273
           ITTYEGKH+HD+P  
Sbjct: 62  ITTYEGKHDHDMPPG 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  101 bits (254), Expect = 3e-27
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 43  EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 101
            DGY WRKYGQK VKGS  PRSY++C+ P CP+KK VERS  D ++    Y+G H+H  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

Query: 102 T 102
            
Sbjct: 75  P 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-36  Score=241.19  Aligned_cols=76  Identities=67%  Similarity=1.280  Sum_probs=73.3

Q ss_pred             cceeeeccCCcccCCCCchhhhccccccCCCCCCcccccccCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCCC
Q 016551          198 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA  273 (387)
Q Consensus       198 ~rvvv~t~s~~d~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~p~~  273 (387)
                      .||+|+|.+++++++|||+|||||||.|||+++||+|||||.+||+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~   76 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG   76 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999999863

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=6.2e-36  Score=240.47  Aligned_cols=75  Identities=79%  Similarity=1.297  Sum_probs=69.7

Q ss_pred             cceeeeccCCcccCCCCchhhhccccccCCCCCCcccccccCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 016551          198 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  272 (387)
Q Consensus       198 ~rvvv~t~s~~d~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~p~  272 (387)
                      .+|+|+|.+++++++|||+|||||||.|||+++||+|||||.++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999984

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=1.7e-30  Score=207.96  Aligned_cols=65  Identities=52%  Similarity=0.996  Sum_probs=61.0

Q ss_pred             ccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccceeecc-CCceeeeeecccCCCCCCC
Q 016551           38 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  102 (387)
Q Consensus        38 ~~~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  102 (387)
                      +...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus        10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            4567899999999999999999999999999999999999999986 6789999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=2e-30  Score=208.51  Aligned_cols=65  Identities=52%  Similarity=0.981  Sum_probs=60.4

Q ss_pred             ccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccceeecc-CCceeeeeecccCCCCCCC
Q 016551           38 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  102 (387)
Q Consensus        38 ~~~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  102 (387)
                      +...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus        13 ~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            4567899999999999999999999999999999999999999975 7789999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	5e-37
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-26

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  126 bits (319), Expect = 5e-37
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 202 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 261
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 262 YEGKHNHDVPA 272
           YEGKHNHD+PA
Sbjct: 61  YEGKHNHDLPA 71

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.7 bits (246), Expect = 2e-26
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 36  TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 94
           T E    +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G
Sbjct: 4   TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 63

Query: 95  SHNHPKP 101
            HNH  P
Sbjct: 64  KHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-35  Score=232.96  Aligned_cols=71  Identities=83%  Similarity=1.402  Sum_probs=68.6

Q ss_pred             eeccCCcccCCCCchhhhccccccCCCCCCcccccccCCCCCchhhhhhhcCCCCEEEEEEecccCCCCCC
Q 016551          202 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  272 (387)
Q Consensus       202 v~t~s~~d~~dDGy~WRKYGQK~ikgn~~pRsYYrCt~~gC~arK~Vqr~~~D~~~~~ttY~G~HnH~~p~  272 (387)
                      |+|.++++++||||+|||||||.|||+++||+||||+.++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999984

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=4.4e-31  Score=206.96  Aligned_cols=66  Identities=52%  Similarity=0.965  Sum_probs=61.1

Q ss_pred             eccccCCCCccccccCcccCCCCCCCCCcccCCCCCCccccceeecc-CCceeeeeecccCCCCCCC
Q 016551           37 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  102 (387)
Q Consensus        37 ~~~~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  102 (387)
                      .+...+||||.|||||||.|||+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         5 ~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           5 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            34567899999999999999999999999999999999999999986 7789999999999999874