Citrus Sinensis ID: 016583

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MASSYRNSPVCVLLILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVVLPFPL
ccccccHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEccccccEEEEEEEEcccccEEEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEEEEEEccccccccccccEEEEccccccccccccccccEEEccccccccHHHHHHHccccccEEEEEcccccccEEEEccccccccEEEccccccccccEEEEEEEEEEccEEEcccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccEEEEEEc
cccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccccccEcccccHHHHccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccEEcccEEEEcccccccccccccccccEEccccccccHHHHHHHccccccEEEEEEcccccEEEEEccccccccccccccccccccEEEEEEEEEEEccEEEEccccEEEEcccEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHEccccccccEcccEEcccc
massyrnspVCVLLILLSCcagccfgfgtfgfdfhhrysdpvkgilavddlpkkgsfaYYSALAHRDRYFRLRgrglaaqgndktpltfsagndtyrlnSLGFLhytnvsvgqpALSFIVALdtgsdlfwlpcdcvscvhglnsssgqvidfniyspntsstsskvpcnstlcelqkqcpsagsncpyqvrylsdgtmstgFLVEDVLHLatdekqsksvdsrisfgcgrvqtgsfldgaapnglfglgmdktsvpsilanqglipnsfsmcfgsdgtgrisfgdkgspgqgetpfslrqthptynititqvsvggnavnfefsaifdsgtsftylndpaytQISETFNSLAKEkretstsdlpfeYCYVLRSFLHLQALVVLPFPL
MASSYRNSPVCVLLILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRglaaqgndktpltfSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATdekqsksvdsrISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVVLPFPL
MASSYRNSPVCVLLILLSccagccfgfgtfgfDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVVLPFPL
********PVCVLLILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIY*****************C*****C**AGSNCPYQVRYLSDGTMSTGFLVEDVLHLAT*********SRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGT**********************THPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFN************DLPFEYCYVLRSFLHLQALVVLPF**
****YRNSPVCVLLILLSCCAGCCFGFGTFGFDFHHRYS***********************************************************NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCV**********I*FNIYSPNTSSTSSKVPCNS***************CPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSL*********SDLPFEYCYVLRSFLHLQALVVLPFPL
********PVCVLLILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPN**********NSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNS**********SDLPFEYCYVLRSFLHLQALVVLPFPL
*ASSYRNSPVCVLLILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVVLPFPL
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSYRNSPVCVLLILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVVLPFPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
Q9LX20 528 Aspartic proteinase-like no no 0.829 0.607 0.398 2e-60
Q9S9K4 475 Aspartic proteinase-like no no 0.640 0.522 0.313 3e-22
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.645 0.609 0.269 2e-16
Q766C2438 Aspartic proteinase nepen N/A no 0.720 0.636 0.272 4e-16
Q0IU52410 Aspartic proteinase Asp1 no no 0.635 0.6 0.269 2e-15
Q6XBF8437 Aspartic proteinase CDR1 no no 0.627 0.556 0.275 5e-14
Q766C3437 Aspartic proteinase nepen N/A no 0.733 0.649 0.272 7e-13
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.625 0.484 0.273 3e-12
C4YSF6391 Candidapepsin-1 OS=Candid N/A no 0.581 0.575 0.252 1e-09
P0CY27391 Candidapepsin-1 OS=Candid N/A no 0.581 0.575 0.252 1e-09
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function desciption
 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 195/356 (54%), Gaps = 35/356 (9%)

Query: 36  HRYSDP----VKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTP----L 87
           HR+SD     +K   + D LP K S  YY  LA  D  FR +   L A+     P     
Sbjct: 31  HRFSDEGRASIKTPSSSDSLPNKQSLEYYRLLAESD--FRRQRMNLGAKVQSLVPSEGSK 88

Query: 88  TFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNS--S 145
           T S+GND       G+LHYT + +G P++SF+VALDTGS+L W+PC+CV C    ++  S
Sbjct: 89  TISSGND------FGWLHYTWIDIGTPSVSFLVALDTGSNLLWIPCNCVQCAPLTSTYYS 142

Query: 146 SGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVE 205
           S    D N Y+P++SSTS    C+  LC+    C S    CPY V YLS  T S+G LVE
Sbjct: 143 SLATKDLNEYNPSSSSTSKVFLCSHKLCDSASDCESPKEQCPYTVNYLSGNTSSSGLLVE 202

Query: 206 DVLHLATDEKQ-----SKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILA 260
           D+LHL  +        S SV +R+  GCG+ Q+G +LDG AP+GL GLG  + SVPS L+
Sbjct: 203 DILHLTYNTNNRLMNGSSSVKARVVIGCGKKQSGDYLDGVAPDGLMGLGPAEISVPSFLS 262

Query: 261 NQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSL--RQTHPTYNITITQVSVGGNA 318
             GL+ NSFS+CF  + +GRI FGD G   Q  TPF       +  Y + +    +G + 
Sbjct: 263 KAGLMRNSFSLCFDEEDSGRIYFGDMGPSIQQSTPFLQLDNNKYSGYIVGVEACCIGNSC 322

Query: 319 VN-FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSD----LPFEYCY 369
           +    F+   DSG SFTYL +  Y ++     +L  ++   +TS     + +EYCY
Sbjct: 323 LKQTSFTTFIDSGQSFTYLPEEIYRKV-----ALEIDRHINATSKNFEGVSWEYCY 373

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|C4YSF6|CARP1_CANAW Candidapepsin-1 OS=Candida albicans (strain WO-1) GN=SAP1 PE=1 SV=1 Back     alignment and function description
>sp|P0CY27|CARP1_CANAL Candidapepsin-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SAP1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
255586856 533 Aspartic proteinase nepenthesin-1 precur 0.894 0.649 0.698 1e-142
356540838 829 PREDICTED: peroxidase [Glycine max] 0.919 0.429 0.642 1e-130
356559246 516 PREDICTED: aspartic proteinase-like prot 0.888 0.666 0.636 1e-129
312282765 515 unnamed protein product [Thellungiella h 0.919 0.691 0.617 1e-126
357517935 544 Aspartic proteinase-like protein [Medica 0.881 0.626 0.633 1e-126
356496606 508 PREDICTED: aspartic proteinase-like prot 0.888 0.677 0.651 1e-125
357483911 527 Aspartic proteinase-like protein [Medica 0.899 0.660 0.623 1e-124
30680102 513 aspartyl protease-like protein [Arabidop 0.860 0.649 0.639 1e-123
297832400 513 aspartyl protease family protein [Arabid 0.860 0.649 0.636 1e-123
449456843 547 PREDICTED: aspartic proteinase-like prot 0.881 0.623 0.576 1e-113
>gi|255586856|ref|XP_002534038.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223525945|gb|EEF28342.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/351 (69%), Positives = 287/351 (81%), Gaps = 5/351 (1%)

Query: 25  FGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDK 84
           +GFGTFGFD HHRYSDPVKG+L+VDDLP+KGS  YY+++AHRD    + GR L +  N  
Sbjct: 36  YGFGTFGFDLHHRYSDPVKGMLSVDDLPEKGSLHYYASMAHRD--ILIHGRKLVSD-NTS 92

Query: 85  TPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVS--CVHGL 142
           TPLTF +GN+TYR +SLGFLHY NVS+G P+LS++VALDTGSDLFWLPCDC +  CV GL
Sbjct: 93  TPLTFFSGNETYRFSSLGFLHYANVSIGTPSLSYLVALDTGSDLFWLPCDCTNSGCVQGL 152

Query: 143 NSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGF 202
              SG+ IDFNIY PN SSTS  +PCN+TLC  Q +CPSA S CPYQV+YLS+GT STG 
Sbjct: 153 QFPSGEQIDFNIYRPNASSTSQTIPCNNTLCSRQSRCPSAQSTCPYQVQYLSNGTSSTGV 212

Query: 203 LVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQ 262
           LVED+LHL TD+ QS+++D++I FGCGRVQTGSFLDGAAPNGLFGLGM   SVPS LA +
Sbjct: 213 LVEDLLHLTTDDAQSRALDAKIIFGCGRVQTGSFLDGAAPNGLFGLGMTNISVPSTLARE 272

Query: 263 GLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE 322
           G   NSFSMCFG DG GRISFGD GS GQGETPF+LRQ HPTYN++IT+++VGG   + E
Sbjct: 273 GYTSNSFSMCFGRDGIGRISFGDTGSSGQGETPFNLRQLHPTYNVSITKINVGGRDADLE 332

Query: 323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRS 373
           FSAIFDSGTSFTYLNDPAYT ISE+FN  AKEKR +S SD+PFEYCY + S
Sbjct: 333 FSAIFDSGTSFTYLNDPAYTLISESFNIGAKEKRYSSISDIPFEYCYEMSS 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540838|ref|XP_003538891.1| PREDICTED: peroxidase [Glycine max] Back     alignment and taxonomy information
>gi|356559246|ref|XP_003547911.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|312282765|dbj|BAJ34248.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|357517935|ref|XP_003629256.1| Aspartic proteinase-like protein [Medicago truncatula] gi|355523278|gb|AET03732.1| Aspartic proteinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356496606|ref|XP_003517157.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357483911|ref|XP_003612242.1| Aspartic proteinase-like protein [Medicago truncatula] gi|355513577|gb|AES95200.1| Aspartic proteinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|30680102|ref|NP_849967.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|17978947|gb|AAL47439.1| putative chloroplast nucleoid DNA-binding protein [Arabidopsis thaliana] gi|22655368|gb|AAM98276.1| At2g17760/At2g17760 [Arabidopsis thaliana] gi|330251585|gb|AEC06679.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832400|ref|XP_002884082.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297329922|gb|EFH60341.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449456843|ref|XP_004146158.1| PREDICTED: aspartic proteinase-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2827921 513 AT2G17760 [Arabidopsis thalian 0.865 0.653 0.638 1.3e-118
TAIR|locus:2125324 524 AT4G35880 [Arabidopsis thalian 0.860 0.635 0.540 1.9e-99
TAIR|locus:2080903 529 AT3G51330 [Arabidopsis thalian 0.868 0.635 0.520 1.6e-88
TAIR|locus:2080973 488 AT3G51360 [Arabidopsis thalian 0.852 0.676 0.479 9.1e-84
TAIR|locus:2080908 530 AT3G51340 [Arabidopsis thalian 0.883 0.645 0.482 3.1e-83
TAIR|locus:2080913 528 AT3G51350 [Arabidopsis thalian 0.865 0.634 0.470 7.6e-80
TAIR|locus:2184138 528 AT5G10080 [Arabidopsis thalian 0.847 0.621 0.401 1.3e-59
TAIR|locus:2075512 488 AT3G02740 [Arabidopsis thalian 0.625 0.495 0.322 2.9e-32
TAIR|locus:2172661 493 AT5G22850 [Arabidopsis thalian 0.669 0.525 0.336 3.3e-31
TAIR|locus:2040545 512 AT2G36670 [Arabidopsis thalian 0.775 0.585 0.312 1.2e-29
TAIR|locus:2827921 AT2G17760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 217/340 (63%), Positives = 269/340 (79%)

Query:    33 DFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAG 92
             +FHHR+SD V G+L  D LP + S  YY  +AHRDR   +RGR LA +  D++ +TFS G
Sbjct:    36 EFHHRFSDQVVGVLPGDGLPNRDSSKYYRVMAHRDRL--IRGRRLANE--DQSLVTFSDG 91

Query:    93 NDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF 152
             N+T R+++LGFLHY NV+VG P+  F+VALDTGSDLFWLPCDC +CV  L +  G  +D 
Sbjct:    92 NETVRVDALGFLHYANVTVGTPSDWFMVALDTGSDLFWLPCDCTNCVRELKAPGGSSLDL 151

Query:   153 NIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLAT 212
             NIYSPN SSTS+KVPCNSTLC    +C S  S+CPYQ+RYLS+GT STG LVEDVLHL +
Sbjct:   152 NIYSPNASSTSTKVPCNSTLCTRGDRCASPESDCPYQIRYLSNGTSSTGVLVEDVLHLVS 211

Query:   213 DEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMC 272
             ++K SK++ +R++FGCG+VQTG F DGAAPNGLFGLG++  SVPS+LA +G+  NSFSMC
Sbjct:   212 NDKSSKAIPARVTFGCGQVQTGVFHDGAAPNGLFGLGLEDISVPSVLAKEGIAANSFSMC 271

Query:   273 FGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTS 332
             FG+DG GRISFGDKGS  Q ETP ++RQ HPTYNIT+T++SVGGN  + EF A+FDSGTS
Sbjct:   272 FGNDGAGRISFGDKGSVDQRETPLNIRQPHPTYNITVTKISVGGNTGDLEFDAVFDSGTS 331

Query:   333 FTYLNDPAYTQISETFNSLAKEKR-ETSTSDLPFEYCYVL 371
             FTYL D AYT ISE+FNSLA +KR +T+ S+LPFEYCY L
Sbjct:   332 FTYLTDAAYTLISESFNSLALDKRYQTTDSELPFEYCYAL 371
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0006865 "amino acid transport" evidence=RCA
TAIR|locus:2125324 AT4G35880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080903 AT3G51330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080973 AT3G51360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080908 AT3G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080913 AT3G51350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184138 AT5G10080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT2G17760
aspartyl protease family protein; aspartyl protease family protein; FUNCTIONS IN- aspartic-type endopeptidase activity; INVOLVED IN- proteolysis; LOCATED IN- anchored to membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Peptidase aspartic, catalytic (InterPro-IPR009007), Peptidase A1 (InterPro-IPR001461), Peptidase aspartic, active site (InterPro-IPR001969); BEST Arabidopsis thaliana protein match is- aspartyl protease family protein (TAIR-AT4G35880.1); Has 1616 Blast hits to 1610 proteins in 172 species- Archae - 0; Bacteria - [...] (513 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G48380
leucine-rich repeat family protein / protein kinase family protein; leucine-rich repeat family [...] (620 aa)
   •  • 0.588
MES12
MES12 (METHYL ESTERASE 12); hydrolase; Encodes a protein predicted to act as a carboxylesterase [...] (349 aa)
      • 0.567
AT3G29375
XH domain-containing protein; XH domain-containing protein; FUNCTIONS IN- molecular_function un [...] (335 aa)
      • 0.534
AT1G53280
DJ-1 family protein; DJ-1 family protein; INVOLVED IN- biological_process unknown; LOCATED IN- [...] (438 aa)
      • 0.534
PER55
peroxidase, putative; peroxidase, putative; FUNCTIONS IN- electron carrier activity, peroxidase [...] (330 aa)
      • 0.506
AT3G50940
AAA-type ATPase family protein; AAA-type ATPase family protein; FUNCTIONS IN- nucleoside-tripho [...] (451 aa)
      • 0.463
WIP1
WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization; [...] (489 aa)
    •   0.462
AT4G26450
unknown protein; unknown protein; Has 2630 Blast hits to 1931 proteins in 274 species- Archae - [...] (708 aa)
    •   0.462
AT2G23060
GCN5-related N-acetyltransferase (GNAT) family protein; GCN5-related N-acetyltransferase (GNAT) [...] (413 aa)
      • 0.438
AT1G76570
chlorophyll A-B binding family protein; chlorophyll A-B binding family protein; FUNCTIONS IN- c [...] (327 aa)
      • 0.423

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-32
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-30
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 5e-29
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 3e-21
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 5e-17
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 6e-17
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 7e-11
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 8e-10
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 6e-09
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-07
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 6e-05
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 1e-04
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 1e-04
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  121 bits (307), Expect = 2e-32
 Identities = 65/256 (25%), Positives = 87/256 (33%), Gaps = 81/256 (31%)

Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSS 164
           +   +S+G P   F + +DTGSDL W  C                               
Sbjct: 2   YLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------- 30

Query: 165 KVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRI 224
                                C Y+  Y  DG+ ++G L  +                 +
Sbjct: 31  ---------------------CSYEYSY-GDGSSTSGVLATETFTFGDSSVSV----PNV 64

Query: 225 SFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSD----GTGR 280
           +FGCG    G    GA   G+ GLG    S+ S L   G   N FS C        G+  
Sbjct: 65  AFGCGTDNEGGSFGGAD--GILGLGRGPLSLVSQL---GSTGNKFSYCLVPHDDTGGSSP 119

Query: 281 ISFGD---KGSPGQGETPFSLRQTHPT-YNITITQVSVGGNAVNFEFSA----------- 325
           +  GD    G  G   TP      +PT Y + +  +SVGG  +    S            
Sbjct: 120 LILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGT 179

Query: 326 IFDSGTSFTYLNDPAY 341
           I DSGT+ TYL DPAY
Sbjct: 180 IIDSGTTLTYLPDPAY 195

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.2
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.89
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.66
PF1365090 Asp_protease_2: Aspartyl protease 95.39
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.35
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 92.56
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 89.59
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 87.44
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 86.1
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 84.49
PF1365090 Asp_protease_2: Aspartyl protease 84.44
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.1e-54  Score=431.50  Aligned_cols=336  Identities=26%  Similarity=0.446  Sum_probs=258.6

Q ss_pred             HHHhhhhccccCCceeeEEEEcccCCccccccccCCCCCCCCHHHHHHHHhcChhHHHHhhhhhccCCCCCceeecCCCc
Q 016583           15 ILLSCCAGCCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGND   94 (387)
Q Consensus        15 ~ll~~~~~~~~~~~~~~~~l~h~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~r~~~l~~~~~~~~~~~~~~g~~   94 (387)
                      +.++.+++..+...+++++|+||+++.     +|...+..+..++++++++||+   +|++++.+.....  .+...+  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~-----sp~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~--~~~~~~--   77 (431)
T PLN03146         10 FSFSELSAAEAPKGGFTVDLIHRDSPK-----SPFYNPSETPSQRLRNAFRRSI---SRVNHFRPTDASP--NDPQSD--   77 (431)
T ss_pred             HHHhhhhhccccCCceEEEEEeCCCCC-----CCCCCCCCChhHHHHHHHHHHH---HHHHHHhhccccC--CccccC--
Confidence            334445555566778999999999872     3333345566788999999999   4566654321111  111111  


Q ss_pred             eeeeccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccc
Q 016583           95 TYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC  173 (387)
Q Consensus        95 ~~~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C  173 (387)
                         +...+.+|+++|.||||||++.|++||||+++||+|. |..|..+.         ++.|||++|+||+.++|+++.|
T Consensus        78 ---~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~---------~~~fdps~SST~~~~~C~s~~C  145 (431)
T PLN03146         78 ---LISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV---------SPLFDPKKSSTYKDVSCDSSQC  145 (431)
T ss_pred             ---cccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC---------CCcccCCCCCCCcccCCCCccc
Confidence               1234678999999999999999999999999999999 98887653         3899999999999999999999


Q ss_pred             ccCC---CCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCC
Q 016583          174 ELQK---QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM  250 (387)
Q Consensus       174 ~~~~---~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~  250 (387)
                      +...   .|..+ +.|.|.+.| +||+.+.|.+++|+|+|++..+ ....++++.|||++...+.+..  ..+||||||+
T Consensus       146 ~~~~~~~~c~~~-~~c~y~i~Y-gdgs~~~G~l~~Dtltlg~~~~-~~~~v~~~~FGc~~~~~g~f~~--~~~GilGLG~  220 (431)
T PLN03146        146 QALGNQASCSDE-NTCTYSYSY-GDGSFTKGNLAVETLTIGSTSG-RPVSFPGIVFGCGHNNGGTFDE--KGSGIVGLGG  220 (431)
T ss_pred             ccCCCCCCCCCC-CCCeeEEEe-CCCCceeeEEEEEEEEeccCCC-CcceeCCEEEeCCCCCCCCccC--CCceeEecCC
Confidence            8752   37542 469999999 6888889999999999987432 1356899999999988775532  4689999999


Q ss_pred             CCCChHHHHHhcCCCCcceEEEecC-----CCCeeEEECCCCCC---CCccccCccCCCCCeEEEEEEEEEECCEEeecC
Q 016583          251 DKTSVPSILANQGLIPNSFSMCFGS-----DGTGRISFGDKGSP---GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE  322 (387)
Q Consensus       251 ~~~s~~~~L~~~g~i~~~FS~~L~~-----~~~G~l~fGg~d~~---~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~~  322 (387)
                      +.+|+++||...  +.++|||||.+     ...|.|+||+....   ...++|++......+|+|+|++|+||++.+.++
T Consensus       221 ~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~  298 (431)
T PLN03146        221 GPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYT  298 (431)
T ss_pred             CCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCC
Confidence            999999999753  45699999965     23799999996422   245678876544578999999999999988754


Q ss_pred             ---------CcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccCCCCcCCccccccccCCcccceeee
Q 016583          323 ---------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVV  382 (387)
Q Consensus       323 ---------~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~  382 (387)
                               ..+||||||++++||+++|++|.++|.++++..+.. +....++.||+......+|.|++
T Consensus       299 ~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~P~i~~  366 (431)
T PLN03146        299 GSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS-DPQGLLSLCYSSTSDIKLPIITA  366 (431)
T ss_pred             ccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC-CCCCCCCccccCCCCCCCCeEEE
Confidence                     268999999999999999999999999999754432 22345789999765567787765

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 1e-10
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 5e-09
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 1e-06
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 3e-06
2qzx_A342 Secreted Aspartic Proteinase (Sap) 5 From Candida A 4e-04
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 7e-04
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 110/281 (39%), Gaps = 56/281 (19%)
Query: 98  LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----N 153
           LN+    +  ++++G     F V +DTGS   W+P   V+C        GQ  DF     
Sbjct: 7   LNNEHVSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDK---PRPGQSADFCKGKG 63
Query: 154 IYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATD 213
           IY+P +S+TS  +                    P+ + Y  DG+ S G L +D       
Sbjct: 64  IYTPKSSTTSQNL------------------GTPFYIGY-GDGSSSQGTLYKDT------ 98
Query: 214 EKQSKSVDSRISFGCGRVQTGSFLD---GAAPNGLFGLGM-------DKTSVPSILANQG 263
                     + FG   +    F D    + P G+ G+G        D  +VP  L NQG
Sbjct: 99  ----------VGFGGASITKQVFADITKTSIPQGILGIGYKTNEAAGDYDNVPVTLKNQG 148
Query: 264 LI-PNSFSMCFGS--DGTGRISFGDKGSPGQGETPFSLRQTHP-TYNITITQVSVGGNAV 319
           +I  N++S+   S    TG+I FG         +  ++  T      IT+  +   G  +
Sbjct: 149 VIAKNAYSLYLNSPNAATGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNI 208
Query: 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETST 360
           N     + DSGT+ TYL       I + F +  K   +  T
Sbjct: 209 NGNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHT 249
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-48
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-47
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 9e-43
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-21
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 5e-21
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-20
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-20
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-19
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-18
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-18
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-17
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 3e-17
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-16
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-16
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-16
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 4e-16
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 4e-16
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 7e-16
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 8e-16
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-15
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-15
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-15
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-15
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 3e-15
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 3e-15
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 4e-15
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 6e-15
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 7e-13
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 8e-13
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 4e-12
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 3e-11
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 7e-11
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-04
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
 Score =  167 bits (424), Expect = 2e-48
 Identities = 49/305 (16%), Positives = 87/305 (28%), Gaps = 41/305 (13%)

Query: 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSS 161
            L+      G       + LD    L W  CD          SS          +   ++
Sbjct: 14  SLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSP---------TCLLAN 59

Query: 162 TSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLAT--DEKQSKS 219
                 C +  C              Y       G  + G L        T    K    
Sbjct: 60  AYPAPGCPAPSC---GSDKHDKPCTAYPYNP-VSGACAAGSLSHTRFVANTTDGSKPVSK 115

Query: 220 VDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTG 279
           V+  +   C   +  + L   +  G+ GL     ++P+ +A+   + N F +C  + G G
Sbjct: 116 VNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPG 174

Query: 280 RISFGD------KGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSA------IF 327
              FG       + +     TP   +   P + I+   + VG   V     A      + 
Sbjct: 175 VAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVML 234

Query: 328 DSGTSFTYLNDPAYTQISETFNSLAKEKRETST-------SDLPFEYCYVLRSFLHLQAL 380
            +   +  L    Y  + + F      +            +  PF  CY  ++  +    
Sbjct: 235 STRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGG 294

Query: 381 VVLPF 385
             +P 
Sbjct: 295 YAVPN 299
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 85.21
2hs1_A99 HIV-1 protease; ultra-high resolution active site 84.74
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 81.31
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 80.39
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=3.6e-46  Score=371.74  Aligned_cols=262  Identities=21%  Similarity=0.368  Sum_probs=210.8

Q ss_pred             ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcccccCC-
Q 016583           99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK-  177 (387)
Q Consensus        99 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C~~~~-  177 (387)
                      +..+.+|+++|.||||||+|.|+|||||+++||+|.  .|                   .+|+||+.++|.++.|.... 
T Consensus        16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~--~c-------------------~~Sst~~~v~C~s~~C~~~~~   74 (413)
T 3vla_A           16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--QN-------------------YVSSTYRPVRCRTSQCSLSGS   74 (413)
T ss_dssp             CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS--SS-------------------CCCTTCEECBTTSHHHHHTTC
T ss_pred             cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC--CC-------------------CCCCCcCccCCCccccccccc
Confidence            567889999999999999999999999999999997  33                   26999999999999998752 


Q ss_pred             -CC---CC------CCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCc---ccccccceEEEEEEeecCCCCCCCCCCc
Q 016583          178 -QC---PS------AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQ---SKSVDSRISFGCGRVQTGSFLDGAAPNG  244 (387)
Q Consensus       178 -~C---~~------~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~---~~~~~~~~~fG~~~~~~g~~~~~~~~dG  244 (387)
                       .|   .+      .++.|.|.+.|+.|++.+.|++++|+|+|+..++.   ..+.++++.|||++.+.+... ...+||
T Consensus        75 ~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~-~~~~dG  153 (413)
T 3vla_A           75 IACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL-ASGVVG  153 (413)
T ss_dssp             CEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS-CTTCCE
T ss_pred             CCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc-cccccc
Confidence             22   21      23569999999547889999999999999854321   136789999999998632211 235799


Q ss_pred             ccccCCCCCChHHHHHhcCCCCcceEEEecC--CCCeeEEECCCCCC---------C-CccccCccCCCC----------
Q 016583          245 LFGLGMDKTSVPSILANQGLIPNSFSMCFGS--DGTGRISFGDKGSP---------G-QGETPFSLRQTH----------  302 (387)
Q Consensus       245 IlGLg~~~~s~~~~L~~~g~i~~~FS~~L~~--~~~G~l~fGg~d~~---------~-~~~~~~v~~~~~----------  302 (387)
                      |||||++.+|+++||.++++++++|||||.+  +.+|.|+||++|..         . ..++|++..+..          
T Consensus       154 IlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~  233 (413)
T 3vla_A          154 MAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEP  233 (413)
T ss_dssp             EEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCC
T ss_pred             ccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCC
Confidence            9999999999999999998889999999998  46799999999852         2 567777765422          


Q ss_pred             -CeEEEEEEEEEECCEEeecC-----------CcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccC-CCCcCCccccc
Q 016583          303 -PTYNITITQVSVGGNAVNFE-----------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET-STSDLPFEYCY  369 (387)
Q Consensus       303 -~~w~v~l~~i~vgg~~~~~~-----------~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~C~  369 (387)
                       .+|+|+|++|+||++.+.++           .++||||||++++||+++|++|+++|.+++...+.+ .+....++.||
T Consensus       234 ~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~  313 (413)
T 3vla_A          234 SVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACF  313 (413)
T ss_dssp             CCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEE
T ss_pred             CceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCccee
Confidence             68999999999999998764           479999999999999999999999999988622111 12234678999


Q ss_pred             cccCCc------ccceeee
Q 016583          370 VLRSFL------HLQALVV  382 (387)
Q Consensus       370 ~~~~~~------~~~~~~~  382 (387)
                      +.+...      .+|.|++
T Consensus       314 ~~~~~~~~~~~~~lP~i~f  332 (413)
T 3vla_A          314 STDNILSTRLGPSVPSIDL  332 (413)
T ss_dssp             ECTTCCEETTEECCCCEEE
T ss_pred             ccCCccccccccCCCcEEE
Confidence            987653      6787765
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 5e-27
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 7e-21
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 8e-21
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-20
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 8e-19
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 2e-18
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 3e-18
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 3e-17
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 3e-17
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 4e-17
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-16
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 5e-16
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 7e-16
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 7e-16
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 3e-15
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 4e-15
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 6e-15
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 8e-15
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 8e-15
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 2e-13
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 5e-13
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 1e-10
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  108 bits (269), Expect = 5e-27
 Identities = 46/303 (15%), Positives = 86/303 (28%), Gaps = 39/303 (12%)

Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
           L+      G       + LD    L W  CD               I  +  +   ++  
Sbjct: 15  LYTIPFHDGAS-----LVLDVAGPLVWSTCD--------GGQPPAEIPCSSPTCLLANAY 61

Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLA--TDEKQSKSVD 221
               C +  C              Y    +  G  + G L             K    V+
Sbjct: 62  PAPGCPAPSC---GSDKHDKPCTAYPYNPV-SGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 222 SRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRI 281
             +   C   +  + L   +  G+ GL     ++P+ +A+   + N F +C  + G G  
Sbjct: 118 VGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVA 176

Query: 282 SFG------DKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFS------AIFDS 329
            FG       + +     TP   +   P + I+   + VG   V            +  +
Sbjct: 177 IFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLST 236

Query: 330 GTSFTYLNDPAYTQISETFNSLAKEKRE-------TSTSDLPFEYCYVLRSFLHLQALVV 382
              +  L    Y  + + F      +            +  PF  CY  ++  +      
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296

Query: 383 LPF 385
           +P 
Sbjct: 297 VPN 299
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 99.98
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.98
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-41  Score=331.00  Aligned_cols=243  Identities=26%  Similarity=0.387  Sum_probs=201.1

Q ss_pred             eee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeeecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccc
Q 016583           96 YRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLC  173 (387)
Q Consensus        96 ~~~-~~~~~~Y~~~i~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydp~~SsT~~~~~C~~~~C  173 (387)
                      .++ |+.|..|+++|.||||||+|.|+|||||+++||+|. |..|..+.         ++.|||++|+||+..       
T Consensus        48 ~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~---------~~~yd~~~Sst~~~~-------  111 (370)
T d3psga_          48 EPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSD---------HNQFNPDDSSTFEAT-------  111 (370)
T ss_dssp             CTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTT---------SCCBCGGGCTTCEEE-------
T ss_pred             cccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCccccc---------ccccCCCcccccccC-------
Confidence            355 788899999999999999999999999999999999 88776443         389999999999995       


Q ss_pred             ccCCCCCCCCCCCceEEEeCCCCceEEEEEEEEEEEeccCCCcccccccceEEEEEEeecCCCCCCCCCCcccccCCCCC
Q 016583          174 ELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT  253 (387)
Q Consensus       174 ~~~~~C~~~~~~~~~~~~Y~~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg~~~~  253 (387)
                                 .|.|.+.| ++ +++.|.++.|++.+++      +.++++.|||++...+.+......+||+|||++..
T Consensus       112 -----------~~~~~~~Y-g~-Gs~~G~~~~d~~~~~~------~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~  172 (370)
T d3psga_         112 -----------SQELSITY-GT-GSMTGILGYDTVQVGG------ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSI  172 (370)
T ss_dssp             -----------EEEEEEES-SS-CEEEEEEEEEEEEETT------EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGG
T ss_pred             -----------CCcEEEEe-CC-ceEEEEEEEEEEeeec------eeeeeeEEEEEeeccCceecccccccccccccCcc
Confidence                       68999999 45 4689999999999985      56889999999988777666667899999998754


Q ss_pred             ------ChHHHHHhcCCC-CcceEEEecC--CCCeeEEECCCCCC-CCccccCccCCCCCeEEEEEEEEEECCEEeecC-
Q 016583          254 ------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE-  322 (387)
Q Consensus       254 ------s~~~~L~~~g~i-~~~FS~~L~~--~~~G~l~fGg~d~~-~~~~~~~v~~~~~~~w~v~l~~i~vgg~~~~~~-  322 (387)
                            ++..+|.++|+| +++||+|+.+  +.+|.|+|||+|+. +.+.+.|++.....+|.|.++++.++|+.+... 
T Consensus       173 ~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~i~v~g~~~~~~~  252 (370)
T d3psga_         173 SASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSG  252 (370)
T ss_dssp             CGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEECTT
T ss_pred             cccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeecccceEEEEEeeEEeCCeEEecCC
Confidence                  477899999999 9999999988  45799999999998 677788888777789999999999999877643 


Q ss_pred             -CcEEEcCcccceeeCHHHHHHHHHHHHHHhhccccCCCCcCCccccccccCCcccceeee
Q 016583          323 -FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLRSFLHLQALVV  382 (387)
Q Consensus       323 -~~~iiDSGTs~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~  382 (387)
                       ..+||||||++++||++++++|.+++.+....     . ....-.|+...   .+|.|++
T Consensus       253 ~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~-----~-~~~~~~C~~~~---~~P~l~f  304 (370)
T d3psga_         253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASENS-----D-GEMVISCSSID---SLPDIVF  304 (370)
T ss_dssp             CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECT-----T-CCEECCGGGGG---GCCCEEE
T ss_pred             CccEEEecCCceEeCCHHHHHHHHHHhCCeeec-----C-CcEEEeccccC---CCceEEE
Confidence             57999999999999999999999988654331     1 11223576643   4566654
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure