Citrus Sinensis ID: 016585

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQSECSEQTSSDGPILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSDKKKSDWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGKVNTPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQAPDYAAVAAKAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHLQSEERGSHSDGGHHANSPATSSSTHTTTTSPVF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHcccccccccccHHHEcccccccccccHcccccccccccccccccccccccccccccHcHHHHHEHccccccccccccccccccccccccccccccccccccccHcccccccHcccccccccccccccccccccccccccccccccccccccccccccEcccHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQsecseqtssdgpileefipikrssshddndndnddrhsnrptttnnnrekeknsdkkksdWLRSVQLwnqspdpqpkeeevvprkATVVEVKrngsggafqpfhrekcgekkdqqqrlgkvntpvptaaassttdtavgkgekndkdkdkegqpqrkqrrswspeLHRRFLHALQQlggshaatpKQIRELMNVDGLTNDEVKSHLQKYRlhtrrpspamhnggnpqapqfVVVGgiwvqapdyaavaakapgeagsiatsngiyapvaapppavpqssasvVQISQQTQSehlqseergshsdgghhanspatsssthttttspvf
Flexible Loop (DISEMBL)
MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQSecseqtssdgpILEEFIPikrssshddndndnddrhsnrptttnnnrekeknsdkkksdwLRSVQlwnqspdpqpkeeevvprKATVVEVKrngsggafqpfhrekCGEKKDQQQRLgkvntpvptaaassttdtavgkgekndkdkdkegqpqrkqrrswspelHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQAPDYAAVAAKAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHLQSEERGSHSDGGHhanspatsssthttttspvf
Low Complexity Region (SEG)
MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQSECSEQTSSDGPILEEFIPIKrssshddndndnddrhsnrptttnnnrekeknsdkkksdWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGKVNtpvptaaassttdtavgkgekndkdkdkegQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQapdyaavaakapgeaGSIATSNGIYapvaapppavpqssasvvqisqqtqsEHLQSEERGSHSDGGHHANSPAtsssthttttsPVF
Disordered region (IsUnstruct)
**********HEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYM****************************************************************************************************************************************************************************FLHA********************************************************QFVVVGGIWVQAPDYAAVAAKAP*****I****GIY**************************************************************
Disordered Region (DISOPRED)
**********HEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRREL***************************************************************************************************************************************************************************SWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYR*********************************************************************************************************************
Disordered Region (DISEMBL)
********RCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEY*************DGPILEEFIPIKRSS***********************************DWLRSVQLWNQ************PRKATVVEVKRNGSGGAFQPFHRE*********************************************************PELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQAPDYAAVAAKAPGEAGSIATSNGIYAPVAAPP*******************************************************
Disordered Region (DISPRO)
*DYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGT*******************PILE*********************************************************************************************************************************************KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPS*************FVVVGGIWVQAPDYAAVAAKAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHL*********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDxxxxxxxxxxxxxxxxxxxxxxxxxxxxLPLCLELVTQAIQACRRELSGTTTEYMHVQSECSEQTSSDGPILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSDKKKSDWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGKVNTPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQAPDYAAVAAKAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHLQSEERGSHSDGGHHANSPATSSSTHTTTTSPVF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q940D0	690	Two-component response re	no	no	0.351	0.197	0.36	4e-14
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.206	0.193	0.469	7e-12
Q9ZWJ9	664	Two-component response re	no	no	0.214	0.125	0.470	8e-12
P62598	596	Two-component response re	no	no	0.160	0.104	0.523	3e-11
Q9LZJ8	426	Putative two-component re	no	no	0.263	0.239	0.382	3e-11
Q9FGT7	635	Two-component response re	no	no	0.175	0.107	0.485	4e-11
Q700D9	255	Putative Myb family trans	no	no	0.134	0.203	0.576	4e-11
Q9SIV3	420	Transcription activator G	no	no	0.173	0.159	0.514	7e-11
Q9FXD6	521	Two-component response re	no	no	0.147	0.109	0.543	8e-11
Q8L9Y3	382	Two-component response re	no	no	0.157	0.159	0.516	3e-10

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 14/150 (9%)

Query: 200 KGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTN 259
           +GE+   DKD++    +K R  WS ELH++F+ A+ QLG    A PK+I ELMNV GLT 
Sbjct: 220 EGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTR 278

Query: 260 DEVKSHLQKYRLHTRRPSPAMHNGGNP-------QAPQF---VVVGGIWVQAPDYAAVAA 309
           + V SHLQKYR++ RR      + GN        Q   F     + G  +QA    AV  
Sbjct: 279 ENVASHLQKYRIYLRRLGGVSQHQGNLNNSFMTGQDASFGPLSTLNGFDLQA---LAVTG 335

Query: 310 KAPGEAGSIATSNGIYAPVAAPPPAVPQSS 339
           + P ++ +   + G+  P       +P SS
Sbjct: 336 QLPAQSLAQLQAAGLGRPAMVSKSGLPVSS 365

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276
           KQR  W+PELH  F+ A+ QLGGS  ATPK + +L+N  GLT   VKSHLQKYR    +P
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 277 SPAMHNGGNPQAPQFVVVGGI 297
             +    G PQ  +   +  I
Sbjct: 291 ETS-EVTGEPQEKKMTSIEDI 310

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 202 EKNDKDKDKEGQPQRKQ-RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTND 260
           E +D+  DKE     K+ R  WS ELH++F+ A+ QLG    A PK+I E+MNV GLT +
Sbjct: 200 EVDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRE 258

Query: 261 EVKSHLQKYRLHTRRPSPAMHNGGN 285
            V SHLQKYR++ RR      + GN
Sbjct: 259 NVASHLQKYRIYLRRLGGVSQHQGN 283

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274
           Q+KQR  W+ ELH++F+ A+ QLG    A PK+I +LMNV+ LT + V SHLQK+RL+ +
Sbjct: 193 QKKQRVVWTVELHKKFVAAVNQLG-YEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLK 251

Query: 275 RPS 277
           R S
Sbjct: 252 RIS 254

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 200 KGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELM----NVD 255
           +G KN  D  +E  P +K R  W+PELH +F  A++++G    A PK I + M    NV 
Sbjct: 194 EGSKNTCDHKEEKSPTKKPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQ 253

Query: 256 GLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQAPDYAAVAAK 310
           GLT + V SHLQKYR  +++          PQ PQ   V G     PD    A+K
Sbjct: 254 GLTRNNVASHLQKYRQSSKKTC-------TPQEPQEDFVWG--NAGPDVTLAASK 299

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 207 DKDKEGQPQRKQ-RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSH 265
           ++D +G   RK+ R  WS ELH++F+ A+QQLG    A PK+I +LM+++GLT + V SH
Sbjct: 183 EQDGDGSGTRKKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASH 241

Query: 266 LQKYRLHTRR 275
           LQKYRL+ ++
Sbjct: 242 LQKYRLYLKK 251

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 38/52 (73%)

Query: 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYR 270
           R  W+PELHR F+HA+  LGG + ATPK + ++M+V GLT   VKSHLQ YR
Sbjct: 25  RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 3/70 (4%)

Query: 203 KNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEV 262
           KN++  + EG+  RK +  W+PELHRRF+ A++QLG    A P +I ELM V  LT   V
Sbjct: 141 KNNRISNNEGK--RKVKVDWTPELHRRFVEAVEQLG-VDKAVPSRILELMGVHCLTRHNV 197

Query: 263 KSHLQKYRLH 272
            SHLQKYR H
Sbjct: 198 ASHLQKYRSH 207

Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275
           R  WS ELH +F++A+ Q+G  H A PK+I +LMNV  LT + V SHLQKYRL+  R
Sbjct: 195 RVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLYLSR 251

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 216 RKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275
           +K R  WS ELH++F++A+ +LG    A PK+I ELMNV GL+ + V SHLQK+RL+ +R
Sbjct: 199 KKSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKR 257

Query: 276 PS 277
            S
Sbjct: 258 LS 259

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
359472983	369	PREDICTED: uncharacterized protein LOC10	0.932	0.978	0.641	1e-126
359472981	362	PREDICTED: uncharacterized protein LOC10	0.932	0.997	0.641	1e-126
297737857	356	unnamed protein product [Vitis vinifera]	0.917	0.997	0.643	1e-123
255576527	393	DNA binding protein, putative [Ricinus c	0.927	0.913	0.655	1e-123
224099337	385	predicted protein [Populus trichocarpa]	0.852	0.857	0.690	1e-123
224111732	390	predicted protein [Populus trichocarpa]	0.974	0.966	0.65	1e-114
355320020	378	myb transcription factor [Humulus lupulu	0.857	0.878	0.578	7e-99
356495976	379	PREDICTED: uncharacterized protein LOC10	0.878	0.897	0.546	1e-95
356576291	381	PREDICTED: uncharacterized protein LOC10	0.894	0.908	0.531	2e-92
356499709	371	PREDICTED: uncharacterized protein LOC10	0.870	0.908	0.545	4e-92

>gi|359472983|ref|XP_002281762.2| PREDICTED: uncharacterized protein LOC100257723 isoform 1 [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/388 (64%), Positives = 296/388 (76%), Gaps = 27/388 (6%)

Query: 1   MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQ 60
           MD+++KMQRCH+Y+EALEEE+RKIQVFQRELPLCLELV+QAI++CR+++SGTT EY H Q
Sbjct: 8   MDFSDKMQRCHDYIEALEEERRKIQVFQRELPLCLELVSQAIESCRQQMSGTTQEYFHGQ 67

Query: 61  SECSEQTSSDGPILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSDKKKSD 120
           SECSEQTSSDGP+LEEFIPIK++S      +D D++ S++P    +    +     KKSD
Sbjct: 68  SECSEQTSSDGPVLEEFIPIKKTS------DDEDEQQSHQPNDNKDKNNDKSG---KKSD 118

Query: 121 WLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGK 180
           WLRSVQLWNQ+PDP  KE+   P+K   +EVK+NG  GAF PF R+K          +G 
Sbjct: 119 WLRSVQLWNQTPDPPVKED--TPKKIPSMEVKKNG--GAFHPFKRDKA---------VGT 165

Query: 181 VNTPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGS 240
             T  P+AA SST +TA G    + K+ +KEGQ QRK RR WSPELHRRFLHALQQLGGS
Sbjct: 166 NPTSAPSAATSSTAETATGCSSGSRKE-EKEGQSQRKARRCWSPELHRRFLHALQQLGGS 224

Query: 241 HAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQ 300
           H ATPKQIRELM VDGLTNDEVKSHLQKYRLHTRRP+PA+ + GNPQAPQFVVVGGIWV 
Sbjct: 225 HVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPNPAIQHNGNPQAPQFVVVGGIWVP 284

Query: 301 APDYAAVAA-KAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHLQSEER 359
            P+Y AVAA  + GEA  + T+NGIYAPVA+ PP+ PQ S    Q  Q  + +  QSEER
Sbjct: 285 PPEYTAVAATTSSGEATGVTTANGIYAPVASVPPSHPQGS---TQRQQPMKPKKSQSEER 341

Query: 360 GSHSDGGHHANSPATSSSTHTTTTSPVF 387
           GSHS+GG  +NSPATSSSTHTTTTSPVF
Sbjct: 342 GSHSEGGVQSNSPATSSSTHTTTTSPVF 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472981|ref|XP_003631224.1| PREDICTED: uncharacterized protein LOC100257723 isoform 2 [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/388 (64%), Positives = 296/388 (76%), Gaps = 27/388 (6%)

Query: 1   MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQ 60
           MD+++KMQRCH+Y+EALEEE+RKIQVFQRELPLCLELV+QAI++CR+++SGTT EY H Q
Sbjct: 1   MDFSDKMQRCHDYIEALEEERRKIQVFQRELPLCLELVSQAIESCRQQMSGTTQEYFHGQ 60

Query: 61  SECSEQTSSDGPILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSDKKKSD 120
           SECSEQTSSDGP+LEEFIPIK++S      +D D++ S++P    +    +     KKSD
Sbjct: 61  SECSEQTSSDGPVLEEFIPIKKTS------DDEDEQQSHQPNDNKDKNNDKSG---KKSD 111

Query: 121 WLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGK 180
           WLRSVQLWNQ+PDP  KE+   P+K   +EVK+NG  GAF PF R+K          +G 
Sbjct: 112 WLRSVQLWNQTPDPPVKED--TPKKIPSMEVKKNG--GAFHPFKRDKA---------VGT 158

Query: 181 VNTPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGS 240
             T  P+AA SST +TA G    + K+ +KEGQ QRK RR WSPELHRRFLHALQQLGGS
Sbjct: 159 NPTSAPSAATSSTAETATGCSSGSRKE-EKEGQSQRKARRCWSPELHRRFLHALQQLGGS 217

Query: 241 HAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQ 300
           H ATPKQIRELM VDGLTNDEVKSHLQKYRLHTRRP+PA+ + GNPQAPQFVVVGGIWV 
Sbjct: 218 HVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPNPAIQHNGNPQAPQFVVVGGIWVP 277

Query: 301 APDYAAVAA-KAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHLQSEER 359
            P+Y AVAA  + GEA  + T+NGIYAPVA+ PP+ PQ S    Q  Q  + +  QSEER
Sbjct: 278 PPEYTAVAATTSSGEATGVTTANGIYAPVASVPPSHPQGS---TQRQQPMKPKKSQSEER 334

Query: 360 GSHSDGGHHANSPATSSSTHTTTTSPVF 387
           GSHS+GG  +NSPATSSSTHTTTTSPVF
Sbjct: 335 GSHSEGGVQSNSPATSSSTHTTTTSPVF 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737857|emb|CBI27058.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/382 (64%), Positives = 290/382 (75%), Gaps = 27/382 (7%)

Query: 7   MQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQSECSEQ 66
           MQRCH+Y+EALEEE+RKIQVFQRELPLCLELV+QAI++CR+++SGTT EY H QSECSEQ
Sbjct: 1   MQRCHDYIEALEEERRKIQVFQRELPLCLELVSQAIESCRQQMSGTTQEYFHGQSECSEQ 60

Query: 67  TSSDGPILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSDKKKSDWLRSVQ 126
           TSSDGP+LEEFIPIK++S      +D D++ S++P    +    +     KKSDWLRSVQ
Sbjct: 61  TSSDGPVLEEFIPIKKTS------DDEDEQQSHQPNDNKDKNNDKSG---KKSDWLRSVQ 111

Query: 127 LWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGKVNTPVP 186
           LWNQ+PDP  KE+   P+K   +EVK+NG  GAF PF R+K          +G   T  P
Sbjct: 112 LWNQTPDPPVKED--TPKKIPSMEVKKNG--GAFHPFKRDKA---------VGTNPTSAP 158

Query: 187 TAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPK 246
           +AA SST +TA G    + K+ +KEGQ QRK RR WSPELHRRFLHALQQLGGSH ATPK
Sbjct: 159 SAATSSTAETATGCSSGSRKE-EKEGQSQRKARRCWSPELHRRFLHALQQLGGSHVATPK 217

Query: 247 QIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQAPDYAA 306
           QIRELM VDGLTNDEVKSHLQKYRLHTRRP+PA+ + GNPQAPQFVVVGGIWV  P+Y A
Sbjct: 218 QIRELMKVDGLTNDEVKSHLQKYRLHTRRPNPAIQHNGNPQAPQFVVVGGIWVPPPEYTA 277

Query: 307 VAA-KAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHLQSEERGSHSDG 365
           VAA  + GEA  + T+NGIYAPVA+ PP+ PQ S    Q  Q  + +  QSEERGSHS+G
Sbjct: 278 VAATTSSGEATGVTTANGIYAPVASVPPSHPQGS---TQRQQPMKPKKSQSEERGSHSEG 334

Query: 366 GHHANSPATSSSTHTTTTSPVF 387
           G  +NSPATSSSTHTTTTSPVF
Sbjct: 335 GVQSNSPATSSSTHTTTTSPVF 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576527|ref|XP_002529155.1| DNA binding protein, putative [Ricinus communis] gi|223531434|gb|EEF33268.1| DNA binding protein, putative [Ricinus communis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 309/421 (73%), Gaps = 62/421 (14%)

Query: 1   MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQ 60
           MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAI+AC+RELSGTTTEYMH Q
Sbjct: 1   MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIEACKRELSGTTTEYMHGQ 60

Query: 61  SECSEQTSS-DGP---------ILEEFIPIKR--SSSHDDNDNDNDD------------- 95
           SECSEQT+S DG          +LEEFIPIKR  SSSH+DNDND+D+             
Sbjct: 61  SECSEQTTSTDGTANGTGTRSLVLEEFIPIKRINSSSHNDNDNDDDNENEKEDNDDDEEE 120

Query: 96  --RHSNRPTTTNNNREKEKNSDKKKSDWLRSVQLWNQS-PDPQPKEEEVVPRKATVVEVK 152
             + S++P   N +     N  KKKSDWLRSVQLWNQS PD +P +E++ PRKA V EVK
Sbjct: 121 EDQDSHKP---NKSIRDINNDQKKKSDWLRSVQLWNQSSPDSEPPKEDL-PRKAAVTEVK 176

Query: 153 RNGSGGAFQPFHREKCGEKKDQQQRLGKVNTP--VPTAAASSTTDTAVGKGEK---NDKD 207
           RNG  GAFQPFH+EK           G   TP  VP +A SS+ +T  G G     N++ 
Sbjct: 177 RNG--GAFQPFHKEK-----------GIAKTPPSVPASATSSSAETGTGGGTSGAGNNRK 223

Query: 208 KDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQ 267
           +DK+GQ QRKQRR WSPELHRRFLHALQQLGGSHAATPKQIRELM VDGLTNDEVKSHLQ
Sbjct: 224 EDKDGQAQRKQRRCWSPELHRRFLHALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQ 283

Query: 268 KYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQAPDYAAVAA-KAPGEAGSIATSNGIYA 326
           KYRLHTRRPSP +HN  NPQAPQFVVVGGIWV  P+YAAVAA  A  E  + A +NGIYA
Sbjct: 284 KYRLHTRRPSPTIHNNSNPQAPQFVVVGGIWVPPPEYAAVAATTASMETVTTAAANGIYA 343

Query: 327 PVAAPPPAVPQSSASVVQISQQTQSEHLQSEERGSHSDGGHHANSPATSSSTHTTTTSPV 386
           PVAAP   +P+         Q+ QS+HLQSE RGSHS+    +NSPATSSSTHTTT SPV
Sbjct: 344 PVAAPLGTIPK--------QQRAQSQHLQSERRGSHSE---RSNSPATSSSTHTTTNSPV 392

Query: 387 F 387
           F
Sbjct: 393 F 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099337|ref|XP_002311443.1| predicted protein [Populus trichocarpa] gi|222851263|gb|EEE88810.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/346 (69%), Positives = 270/346 (78%), Gaps = 16/346 (4%)

Query: 1   MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEY-MHV 59
           MD+AEK+QRC EYVEALEEE+RKIQVF+RELPLCLELVTQAI+AC+RELSGTTTEY MH 
Sbjct: 7   MDFAEKIQRCGEYVEALEEERRKIQVFERELPLCLELVTQAIEACKRELSGTTTEYNMHG 66

Query: 60  QSECSEQTSSDGPILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKE-----KNS 114
           QSECSEQTSS+GP+LEEFIPIKR+ S+D+NDN+NDD H  + +  N+ R K       N 
Sbjct: 67  QSECSEQTSSEGPVLEEFIPIKRTHSYDENDNENDD-HQEQQSHDNSKRNKTSISSGNND 125

Query: 115 DKKKSDWLRSVQLWNQSPD-PQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKD 173
            KKKSDWLRSVQLWN SPD PQ   ++V+  KA V EVKRNG+GGAFQPFHREK    K 
Sbjct: 126 HKKKSDWLRSVQLWNHSPDLPQ---KQVL--KAAVTEVKRNGAGGAFQPFHREK-SIGKT 179

Query: 174 QQQRLGKVNTPVPTAAASSTTDTAVGK-GEKNDKDKDKEGQPQRKQRRSWSPELHRRFLH 232
             Q + K  T VP +  SST   A G  G  ++K +D +G  QRKQRR WSPELHRRFLH
Sbjct: 180 SNQAIAKAPTSVPASTTSSTAVVATGGIGGGSNKKEDIDGGNQRKQRRCWSPELHRRFLH 239

Query: 233 ALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFV 292
           AL+QLGGSHAATPKQIRELM VDGLTNDEVKSHLQKYRLHTRRPSP +HN  N QAPQFV
Sbjct: 240 ALRQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNSNQQAPQFV 299

Query: 293 VVGGIWVQAPDYAAVAAKAPGEAGS-IATSNGIYAPVAAPPPAVPQ 337
           VVGGIWV  P+YAAVAA       S I+ +NGIYAP+AA PP VPQ
Sbjct: 300 VVGGIWVPPPEYAAVAATTASAETSPISAANGIYAPIAAAPPTVPQ 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111732|ref|XP_002315957.1| predicted protein [Populus trichocarpa] gi|222864997|gb|EEF02128.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/400 (65%), Positives = 295/400 (73%), Gaps = 23/400 (5%)

Query: 1   MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEY-MHV 59
           MD+AEKMQRCHEYVEALEEE+RKIQVF+RELPLCLELVTQAI+AC+RELSGTT ++ MH 
Sbjct: 1   MDFAEKMQRCHEYVEALEEERRKIQVFERELPLCLELVTQAIEACKRELSGTTEDHNMHG 60

Query: 60  QSECSEQTSSDGPILEEFIPIKR--SSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSD-- 115
           QSECSEQTSS+GP+LEEFIPIKR  SS  ++NDN++DD       + N+N+  + NS   
Sbjct: 61  QSECSEQTSSEGPVLEEFIPIKRTHSSDDEENDNNHDDDDHQEQQSQNDNKRNKSNSSIS 120

Query: 116 ----KKKSDWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEK 171
               KKKSDWLRSVQLWNQSPDP  K++  +PRKA V EVKRNG+GGAFQPFHREK    
Sbjct: 121 NNDHKKKSDWLRSVQLWNQSPDPPQKQD--LPRKAAVTEVKRNGAGGAFQPFHREK-SVG 177

Query: 172 KDQQQRLGKVNTPVPTAAASSTTDTAVGKGEKN-DKDKDKEGQPQRKQRRSWSPELHRRF 230
           K   Q + K    VP +A SS      G      +K +DKE   QRKQRR WSPELHRRF
Sbjct: 178 KSSNQAISKAPPSVPASATSSIAGAVTGGTGGGGNKKEDKEKGNQRKQRRCWSPELHRRF 237

Query: 231 LHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQ 290
           LH+LQQLGGSHAATPKQIRELM VDGLTNDEVKSHLQKYRLHTRRPSP +H   + QAPQ
Sbjct: 238 LHSLQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHTNSSQQAPQ 297

Query: 291 FVVVGGIWVQAPDY-AAVAAKAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQT 349
           FVVVGGIWV   +Y A  A    GE  +I+ +NGIYAP+AA          +V Q  Q  
Sbjct: 298 FVVVGGIWVPPTEYAAVAATTTAGETSTISAANGIYAPIAA-------PPPAVPQNRQHK 350

Query: 350 QSEHLQSEERGSHSD--GGHHANSPATSSSTHTTTTSPVF 387
           QSEH QSE RGSH +  G H  NSPATSSSTHTTTTSPVF
Sbjct: 351 QSEHSQSEGRGSHGERGGAHSNNSPATSSSTHTTTTSPVF 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355320020|emb|CBY88799.1| myb transcription factor [Humulus lupulus]

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 214/370 (57%), Positives = 261/370 (70%), Gaps = 38/370 (10%)

Query: 12  EYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTT-EYMHVQSECSEQTSSD 70
           +Y+EALE E++KIQVFQRELPLCLELV Q I  C+++LSGTTT EY+H QSECSEQTSS+
Sbjct: 10  KYIEALEVERKKIQVFQRELPLCLELVNQTIDRCKQQLSGTTTTEYVHGQSECSEQTSSE 69

Query: 71  GP-ILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSDKKKSDWLRSVQLWN 129
           G  + EEF+P+KRSSS D+++ +  +  S +  TT    EK+   +KKKSDWLRSVQLWN
Sbjct: 70  GHHVFEEFMPLKRSSSSDNDEEEEKEEQSPKRQTT----EKD---NKKKSDWLRSVQLWN 122

Query: 130 QSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGKVN------- 182
            +PDP   ++E +P+KA+V EVK NG  GAFQPF REK          +GK N       
Sbjct: 123 TTPDPVSSQKEELPKKASVTEVKSNG--GAFQPFQREK---------NVGKPNGTSSSAC 171

Query: 183 -TPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHALQQLGGSH 241
            TPV +A A+S+       G  N +++DK+GQ QRKQRR+WSPELH+RFL+ALQQLGGSH
Sbjct: 172 TTPVASAPATSSN----ADGGSNKREEDKDGQNQRKQRRNWSPELHKRFLNALQQLGGSH 227

Query: 242 AATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVVGGIWVQA 301
           AATPKQIRELM VDGLTNDEVKSHLQKYRLHTRRP+PA+HN GN Q PQ V VGGIW+Q 
Sbjct: 228 AATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPNPAIHNNGNAQTPQVVFVGGIWMQP 287

Query: 302 PDYAAVAAKAPGEAGSIATSNGIYAPVAAPPPAVPQSSASVVQISQQTQSEHLQ--SEER 359
            +YAA    +       AT NG+YAPVAAPP A    +    Q+  +  SEH    SEER
Sbjct: 288 SEYAATVGGSSDSPNGAAT-NGVYAPVAAPPQAAHHVAVHRQQMQNKHSSEHSHNNSEER 346

Query: 360 ---GSHSDGG 366
               SHS+GG
Sbjct: 347 RMSHSHSEGG 356

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495976|ref|XP_003516846.1| PREDICTED: uncharacterized protein LOC100819750 [Glycine max]

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/379 (54%), Positives = 257/379 (67%), Gaps = 39/379 (10%)

Query: 1   MDYAEKMQRCH----EYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEY 56
           M +A+KMQ       +Y+EALEEE+RKIQVF +ELPL LELVTQAI+ACR++L+GT  EY
Sbjct: 1   MQFAQKMQPLKMGFLQYIEALEEERRKIQVFPKELPLSLELVTQAIEACRQQLAGTVAEY 60

Query: 57  -MHVQSECSEQTSSDGPILEEFIPIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSD 115
            ++ QSECSEQTS+DGP+ EEFIP+K+ +S D  + +++          + ++ K+  +D
Sbjct: 61  NLNGQSECSEQTSTDGPVFEEFIPLKKRASQDSVEEEDE-------DEEHFHKHKKTATD 113

Query: 116 KKKSDWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHRE-KCGEKK-- 172
           KKKSDWLRSVQLWN +P P  KE+ VVPRK  VVEVKRNG  GAFQPF RE K G+ K  
Sbjct: 114 KKKSDWLRSVQLWNPNPPPT-KEDVVVPRKTDVVEVKRNG--GAFQPFQREEKSGDAKAS 170

Query: 173 --DQQQRLGKVNTPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRF 230
             +    +GK  +  P  A SST    V      +  K+++GQ QRKQRR WS ELH+RF
Sbjct: 171 INNDASAIGKAPSSPPVPATSSTGPVRV------ENKKEEKGQAQRKQRRCWSQELHKRF 224

Query: 231 LHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQ 290
           LHALQQLGG+ +ATPKQIRELM VDGLTNDEVKSHLQK+RLHTRR SP +HN  + QA  
Sbjct: 225 LHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRR-SPIIHNNASSQAGP 283

Query: 291 FVVVGGIWVQAPDYAAVA--AKAPGE----AGSIATSNGIYAPVAAPPPAVPQSSASVVQ 344
             +VG I+VQ P+YAAVA  + A GE      +     GIYAPVAA PPAV  +      
Sbjct: 284 LFLVGNIFVQPPEYAAVATTSTASGEELTTVTTTTAPTGIYAPVAAHPPAVTHT------ 337

Query: 345 ISQQTQSEHLQSEERGSHS 363
           +    Q EH  SEER +HS
Sbjct: 338 LPIMKQKEHSHSEERPNHS 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576291|ref|XP_003556266.1| PREDICTED: uncharacterized protein LOC100789537 [Glycine max]

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/376 (53%), Positives = 254/376 (67%), Gaps = 30/376 (7%)

Query: 3   YAEKMQRCH----EYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEY-M 57
           + EKMQ       +Y++ LEEE+RKIQVF +ELPL LELVTQAI+ C+++LSGTT+EY +
Sbjct: 4   FTEKMQSLKMGFPDYIQTLEEERRKIQVFSKELPLSLELVTQAIETCKQQLSGTTSEYNL 63

Query: 58  HVQSECSEQTSS-DGPILEEFIPIK-RSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNSD 115
           +  SECSEQT+S +GP+LEEFIPIK R+SS     +++D++HS++   +  N     NSD
Sbjct: 64  NGHSECSEQTTSTEGPVLEEFIPIKKRASSSSPCCDEDDEQHSHKQRVSKEN----NNSD 119

Query: 116 KKKSDWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGG-AFQPFHREKCGEKKDQ 174
           K+KSDWLRSVQLWN    P P  EE V +    VE+KR+GSGG AFQP H+E+   K  +
Sbjct: 120 KRKSDWLRSVQLWN----PDPPAEEDVSKIVCGVELKRSGSGGGAFQPLHKEEKSSKPSE 175

Query: 175 QQRLGKVNTPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRRFLHAL 234
              L K  +  P  A SS+   AV   E+   +   EGQ  RK RR WS +LH+RFLHAL
Sbjct: 176 S--LSKTPSSTPVVATSSS---AVEPAEEKSLN---EGQ--RKLRRCWSQDLHKRFLHAL 225

Query: 235 QQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAPQFVVV 294
           QQLGG+ +ATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP P +HN  +PQA  FV+V
Sbjct: 226 QQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPIPMVHNSSDPQAAPFVLV 285

Query: 295 GGIWVQAPDYAAVA-AKAPGEAGSIATSNGIYAPVAAPPPAV---PQSSASVVQISQQTQ 350
           G I+VQ+P+YAAVA + A  E  ++A    IYAPVA  P  V   P  S    Q  +   
Sbjct: 286 GNIFVQSPEYAAVATSTASREVATVAAPARIYAPVATHPTPVSHPPDDSIKKPQFKKVKL 345

Query: 351 SEHLQSEERGSHSDGG 366
            E   S++R +HS+G 
Sbjct: 346 FELSNSDDRANHSEGA 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499709|ref|XP_003518679.1| PREDICTED: uncharacterized protein LOC100799501 [Glycine max]

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 205/376 (54%), Positives = 252/376 (67%), Gaps = 39/376 (10%)

Query: 1   MDYAEKMQRC----HEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEY 56
           M +AEKMQ       EY+EALEEE++KIQVF +ELPL LELVTQAI+ACR++L GT  EY
Sbjct: 1   MQFAEKMQPLKMGFREYIEALEEERKKIQVFPKELPLSLELVTQAIEACRQQLCGTVAEY 60

Query: 57  -MHVQSECSEQTSSDGPILEEFI-PIKRSSSHDDNDNDNDDRHSNRPTTTNNNREKEKNS 114
            ++ QSECSEQTS+DGP+ EEFI PIK+ +S    + D+D+ HS++          +  +
Sbjct: 61  NLNAQSECSEQTSTDGPVFEEFIIPIKKKASQASVEEDDDEEHSHK--------HTKTTT 112

Query: 115 DKKKSDWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHRE-KCGEKK- 172
           DKKKSDWLRSVQLWN  P+P P +E+VVPRK  VVEVKRNG GGAFQPF RE K G  K 
Sbjct: 113 DKKKSDWLRSVQLWN--PNPPPTKEDVVPRKTNVVEVKRNG-GGAFQPFQREEKSGVSKA 169

Query: 173 ---DQQQRLGKVNTPVPTAAASSTTDTAVGKGEKNDKDKDKEGQPQRKQRRSWSPELHRR 229
              ++   +GK  +  P  A S T    V      D  K+++G  QRKQRR WS ELH+R
Sbjct: 170 NNNNEASAIGKAPSSPPVPATSYTGPVRV------DSKKEEKGDAQRKQRRCWSQELHKR 223

Query: 230 FLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPAMHNGGNPQAP 289
           FLHALQQLGG+ +ATPKQIRELM VDGLTNDEVKSHLQK+RLHTRR SP +HN  + QA 
Sbjct: 224 FLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRR-SPIIHNSASSQAG 282

Query: 290 QFVVVGGIWVQAPDYAAVAAKAPGE--AGSIATSNGIYAPVAAPPPAVPQSSASVVQISQ 347
              +VG I+VQ P+YA  +A   GE    + A   GIYAPVAA  PA   +S  +     
Sbjct: 283 SLFLVGNIFVQPPEYATSSASG-GELTTATPAAPTGIYAPVAAHLPAGTHTSPIM----- 336

Query: 348 QTQSEHLQSEERGSHS 363
             +  H  SEE+ +HS
Sbjct: 337 --KHSHSPSEEKNNHS 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2026863	354	AT1G68670 [Arabidopsis thalian	0.449	0.491	0.550	6.7e-75
TAIR|locus:2031210	344	AT1G25550 [Arabidopsis thalian	0.726	0.816	0.537	4.6e-73
TAIR|locus:2205339	344	HRS1 "HYPERSENSITIVITY TO LOW	0.284	0.319	0.627	3.6e-69
TAIR|locus:2085984	357	AT3G25790 [Arabidopsis thalian	0.279	0.302	0.612	1.1e-62
TAIR|locus:2063746	432	AT2G03500 "AT2G03500" [Arabido	0.222	0.199	0.747	3.8e-48
TAIR|locus:2115070	363	AT4G37180 [Arabidopsis thalian	0.157	0.168	0.704	1.3e-33
TAIR|locus:2010297	333	AT1G49560 "AT1G49560" [Arabido	0.206	0.240	0.620	5.3e-30
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.178	0.168	0.507	6.8e-12
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.206	0.193	0.469	1.2e-11
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.155	0.135	0.566	5e-11

TAIR|locus:2026863 AT1G68670 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 104/189 (55%), Positives = 113/189 (59%)

Query:   121 WLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRLGK 180
             WLRSVQLWN SPD  PKEE V  +KA VVEVK     GAFQPF +     + D Q  +  
Sbjct:   117 WLRSVQLWNHSPDLNPKEERVA-KKAKVVEVKPKS--GAFQPFQKRVL--ETDLQPAVKV 171

Query:   181 VNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPQ-------RKQRRSWSPELHRRFLHA 233
              +                              + Q       RKQRR WSPELHRRFL+A
Sbjct:   172 ASSMPATTTSSTTETCGGKSDLIKAGDEERRIEQQQSQSHTHRKQRRCWSPELHRRFLNA 231

Query:   234 LQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP---SPAMHNGGNPQAPQ 290
             LQQLGGSH ATPKQIR+ M VDGLTNDEVKSHLQKYRLHTRRP   S A  + GN Q PQ
Sbjct:   232 LQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQ 291

Query:   291 FVVVGGIWV 299
             FVVVGGIWV
Sbjct:   292 FVVVGGIWV 300

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2031210 AT1G25550 [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 163/303 (53%), Positives = 187/303 (61%)

Query:     1 MDYAEKMQRCHEYVEALEEEKRKIQVFQRELPLCLELVTQAIQACRRELSGTTTEYMHVQ 60
             MDY +KM+RCHEYVEALEEE++KIQVFQRELPLCLELVTQAI++CR+ELS  ++E++  Q
Sbjct:     9 MDYTQKMKRCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIESCRKELS-ESSEHVGGQ 67

Query:    61 SECSEQTSSD--GPILEEFIPIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 118
             SECSE+T+S+  G + EEF+PIK                                     
Sbjct:    68 SECSERTTSECGGAVFEEFMPIKWSSASSDETDKDEEAEKTEMMTNENNDGDKKKSD--- 124

Query:   119 XXWLRSVQLWNQSPDPQPKEEEVVPRKATVVEVKRNGSGGAFQPFHREKCGEKKDQQQRL 178
               WLRSVQLWNQSPDPQP       +K  V+EVKR  S GAFQPF +EK   K    Q L
Sbjct:   125 --WLRSVQLWNQSPDPQPNN-----KKPMVIEVKR--SAGAFQPFQKEK--PKAADSQPL 173

Query:   179 GKVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPQRKQRRSWSPELHRRFLHALQQLG 238
              K                                   RKQRR WSPELHRRFLHALQQLG
Sbjct:   174 IKA---ITPTSTTTTSSTAETVGGGKEFEEQKQSHSNRKQRRCWSPELHRRFLHALQQLG 230

Query:   239 GSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPS-PAMHNGG-NPQAPQFVVVGG 296
             GSH ATPKQIR+LM VDGLTNDEVKSHLQKYRLHTRRP+ P +  GG NPQ  QF+V+ G
Sbjct:   231 GSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLHTRRPATPVVRTGGENPQQRQFMVMEG 290

Query:   297 IWV 299
             IWV
Sbjct:   291 IWV 293

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2205339 HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 3.6e-69, Sum P(3) = 3.6e-69
 Identities = 69/110 (62%), Positives = 74/110 (67%)

Query:   216 RKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR 275
             RKQRR WS +LHRRFL+ALQ LGG H ATPKQIRE M VDGLTNDEVKSHLQKYRLHTRR
Sbjct:   180 RKQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLHTRR 239

Query:   276 PSPAMHNGGNPQAPQFVVVGGIWVQXXXXXXXXXXXXXXXGSIATSNGIY 325
             P   + N GN Q   FVVVGG+WV                 S  T+ GIY
Sbjct:   240 PRQTVPNNGNSQTQHFVVVGGLWVPQSDYSTGKTTGGATTSSTTTTTGIY 289

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2085984 AT3G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
 Identities = 68/111 (61%), Positives = 73/111 (65%)

Query:   215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274
             QRK RR WS ELHRRFL+AL+QLGG H ATPKQIR++M VDGLTNDEVKSHLQKYRLH R
Sbjct:   194 QRKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLHAR 253

Query:   275 RPSPAMHNGGNPQAPQFVVVGGIWVQXXXXXXXXXXXXXXXGSIATSNGIY 325
             RPS    N  N Q   FVVVGGIWV                G    + GIY
Sbjct:   254 RPSQTTPNNRNSQTQHFVVVGGIWVPQTNHSTANAVNAVASGE---TTGIY 301

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2063746 AT2G03500 "AT2G03500" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 3.8e-48, Sum P(3) = 3.8e-48
 Identities = 65/87 (74%), Positives = 69/87 (79%)

Query:   213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 272
             Q  RK RR WSP+LHRRF+ ALQ LGGS  ATPKQIRELM VDGLTNDEVKSHLQKYRLH
Sbjct:   229 QSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 288

Query:   273 TRRPSPAMHNGGNPQAPQFVVVGGIWV 299
             TRRPSP+    G P  P  VV+GGIWV
Sbjct:   289 TRRPSPSPQTSGGP-GPHLVVLGGIWV 314

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2115070 AT4G37180 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query:   215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274
             +++QRR WS ELHR+F+ AL +LGG   ATPKQIR+LM VDGLTNDEVKSHLQKYR+H R
Sbjct:   215 KKEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIR 274

Query:   275 R 275
             +
Sbjct:   275 K 275

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2010297 AT1G49560 "AT1G49560" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 54/87 (62%), Positives = 62/87 (71%)

Query:   213 QPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 272
             Q  RKQRR W+PELHRRF+ ALQQLGG   ATPKQIRE M  +GLTNDEVKSHLQKYRLH
Sbjct:   188 QALRKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 247

Query:   273 TRRPSPAMHNGGNPQAPQFVVVG-GIW 298
              R+P+       N +    VV+G  +W
Sbjct:   248 IRKPN------SNAEKQSAVVLGFNLW 268

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 36/71 (50%), Positives = 46/71 (64%)

Query:   217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276
             K R  W+PELH  F+ A+  LGGS  ATPK + ++M V+GLT   VKSHLQKYR    RP
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284

Query:   277 SPAMHNGGNPQ 287
              P+    G+P+
Sbjct:   285 EPS--ETGSPE 293

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 38/81 (46%), Positives = 48/81 (59%)

Query:   217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276
             KQR  W+PELH  F+ A+ QLGGS  ATPK + +L+N  GLT   VKSHLQKYR    +P
Sbjct:   231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query:   277 SPAMHNGGNPQAPQFVVVGGI 297
               +   G  PQ  +   +  I
Sbjct:   291 ETSEVTG-EPQEKKMTSIEDI 310

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 34/60 (56%), Positives = 41/60 (68%)

Query:   217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP 276
             KQR  W+PELH  F+ A+ QLGGS  ATPK + +L+N  GLT   VKSHLQKYR    +P
Sbjct:   238 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYKP 297

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030296001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (356 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	8e-25
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-11
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-05

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 95.5 bits (238), Expect = 8e-25
 Identities = 36/57 (63%), Positives = 42/57 (73%)

Query: 217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHT 273
           K R  W+ +LH RFL A+Q+LGG   ATPK+I ELM VDGLT D+V SHLQKYRL  
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 183 TPVPTAAASSTTDTAVGKGEKNDKDKD-KEGQPQRKQRR-SWSPELHRRFLHALQQLGGS 240
           T    +A+ S   ++V + +     K  K   P +K+ +  W+PELHRRF+HA++QL G 
Sbjct: 199 TGDVVSASDSGECSSVDRKDNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQL-GV 257

Query: 241 HAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274
             A P +I ELM V  LT   + SHLQKYR H R
Sbjct: 258 EKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYR 270
           R  W+PE     + A+++ G  +     +I + +   G T+++ K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.48
smart00426	68	TEA TEA domain.	90.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	86.04
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	84.79

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=1.1e-23  Score=209.84  Aligned_cols=66  Identities=48%  Similarity=0.816  Sum_probs=61.5

Q ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCCCC
Q 016585          212 GQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSP  278 (387)
Q Consensus       212 ~~~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~~~  278 (387)
                      ....||+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+++++...
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~  295 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA  295 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence            355889999999999999999999999 799999999999999999999999999999999986543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=1.5e-21  Score=149.21  Aligned_cols=56  Identities=64%  Similarity=0.992  Sum_probs=54.1

Q ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585          217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH  272 (387)
Q Consensus       217 K~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~  272 (387)
                      |+|+.||+|+|++||+||++||+.+.|+||.|+++|++++||+.||+|||||||++
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999998789999999999999999999999999999986

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.48  E-value=0.00024  Score=51.41  Aligned_cols=48  Identities=27%  Similarity=0.452  Sum_probs=41.0

Q ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhh
Q 016585          219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYR  270 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYR  270 (387)
                      |..||+|-+..|++||.++|.-   .-+.|.+.|+ .|-|..+|++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999942   4589999998 7889999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=90.20  E-value=0.29  Score=39.70  Aligned_cols=47  Identities=26%  Similarity=0.455  Sum_probs=30.0

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCChHHHHh-------------Hhc-CCC--CCHHHHHHhhhh
Q 016585          221 SWSPELHRRFLHALQQLGGSHAATPKQIRE-------------LMN-VDG--LTNDEVKSHLQK  268 (387)
Q Consensus       221 ~WT~ELH~rFv~Av~~LGG~~~AtPK~Ile-------------lM~-V~g--LT~~~VkSHLQK  268 (387)
                      +|.++|-..|++|+..+- .....+-+|+.             -+- ..|  =|+.||.||||-
T Consensus         5 vWp~~lE~Af~~aL~~~~-~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP-PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC-ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            799999999999999775 11111112221             111 233  478899999994

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=86.04  E-value=2.4  Score=28.60  Aligned_cols=43  Identities=14%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             ccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhh
Q 016585          220 RSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQK  268 (387)
Q Consensus       220 l~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQK  268 (387)
                      -.||++=...|+.++.++| +-.    ..|.+.|+  +=|..+|+.+-..
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w----~~Ia~~~~--~rt~~~~~~~~~~   45 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNW----EKIAKELP--GRTAEQCRERWNN   45 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcC--CCCHHHHHHHHHH
Confidence            4699999999999999999 544    77888876  6688888877554

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=84.79  E-value=2.8  Score=27.96  Aligned_cols=43  Identities=19%  Similarity=0.398  Sum_probs=34.7

Q ss_pred             cCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585          221 SWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY  269 (387)
Q Consensus       221 ~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY  269 (387)
                      .||.+=+..|+.++..+| +.    =..|.+.|+  +=|..+|+.|.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~----w~~Ia~~~~--~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNN----WEKIAKELP--GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCC----HHHHHhHcC--CCCHHHHHHHHHHh
Confidence            499999999999999999 44    377888875  35888898886654

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	387
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		3e-09

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274
           Q+K R  W+ ELH +FL A+  LG    A PK+I +LMNVD LT + V SHLQK+R+  +
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61
Query: 275 RPS 277
           + S
Sbjct: 62  KVS 64
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	5e-04

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 91.5 bits (227), Expect = 2e-23
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274
           Q+K R  W+ ELH +FL A+  LG   A  PK+I +LMNVD LT + V SHLQK+R+  +
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERA-VPKKILDLMNVDKLTRENVASHLQKFRVALK 61

Query: 275 RPS 277
           + S
Sbjct: 62  KVS 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 52/351 (14%), Positives = 93/351 (26%), Gaps = 112/351 (31%)

Query: 56  YMHVQSECSEQTSSDGPILEEFIP--IKRSSSHDDND-------NDNDDRHSNRPTTTNN 106
           + H+  E  E       IL  F    +      D  D        +  D         + 
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 107 NR-------EKEKN--------SDKKKSDWLRSV--------------------QLWNQS 131
                     K++           +    +L S                     +L+N  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-- 121

Query: 132 PDPQPKEEEVVPRKATVVEVKR-------------NGSGGA------------------- 159
            D Q   +  V R    +++++             +G  G+                   
Sbjct: 122 -DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 160 -FQPF--HREKCGEKKD---QQQRLGKVNTPVPTAAASSTTDTAVGKGEKND-KDKDKEG 212
            F+ F  + + C   +      Q+L     P  T+ +  +++    K   +  + + +  
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRL 237

Query: 213 QPQRKQRRS-------WSPELHRRFLHALQQL---------GGSHAATPKQIRELMNVDG 256
              +             + +    F  + + L             AAT   I    +   
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 257 LTNDEVKSHLQKYRLHTRRPS-PAMHNGGNPQAPQFVVVGGIWVQAPDYAA 306
           LT DEVKS L KY L  R    P      NP+      +  I     D  A
Sbjct: 298 LTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRR-----LSIIAESIRDGLA 342

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 212 GQPQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL 271
           G       + W+ E  ++    L +       + +  +    +   T  +V S +QKY +
Sbjct: 1   GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFI 60

Query: 272 HTRR---PSPAMHNG 283
              +   P     +G
Sbjct: 61  KLTKAGIPVSGPSSG 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	95.19
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	94.91
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	93.86
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	93.73
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	91.59
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	91.33
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	91.15
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	90.75
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	89.99
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	87.39
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	87.35
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	87.34
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	86.9
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	84.29
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	83.59
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	83.5
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	82.27
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	81.76

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=1.2e-28  Score=191.79  Aligned_cols=62  Identities=48%  Similarity=0.803  Sum_probs=59.5

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585          214 PQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP  276 (387)
Q Consensus       214 ~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~  276 (387)
                      +.+|+|++||+|||++||+||++|| .++||||.|+++|+|+|||++||+|||||||+.++|.
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~   63 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence            4689999999999999999999999 7999999999999999999999999999999999884

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=95.19  E-value=0.038  Score=43.77  Aligned_cols=51  Identities=20%  Similarity=0.323  Sum_probs=42.8

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585          215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL  271 (387)
Q Consensus       215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl  271 (387)
                      ....+-.||+|-+.+|++||+.+|+-+    +.|-++|+  +=|..||+.|-++|-+
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W----~~IA~~v~--~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYKDDW----NKVSEHVG--SRTQDECILHFLRLPI   64 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSSSCH----HHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCH----HHHHHHcC--CCCHHHHHHHHHHhcc
Confidence            444566899999999999999999666    88888875  6799999999988733

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.91  E-value=0.042  Score=42.13  Aligned_cols=54  Identities=19%  Similarity=0.350  Sum_probs=41.9

Q ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCCh---HHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585          219 RRSWSPELHRRFLHALQQLGGSHAATP---KQIRELMNVDGLTNDEVKSHLQKYRLHTRR  275 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LGG~~~AtP---K~IlelM~V~gLT~~~VkSHLQKYRl~~rr  275 (387)
                      +-.||+|=+.+|+++|..+|. +.-.|   ..|-+.|  +|=|..||+.|-|+|-....+
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHHh
Confidence            447999999999999999992 22112   4576776  578999999999999776544

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=93.86  E-value=0.15  Score=38.98  Aligned_cols=53  Identities=23%  Similarity=0.303  Sum_probs=42.7

Q ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585          217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR  275 (387)
Q Consensus       217 K~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr  275 (387)
                      ..+-.||+|-+..|+++|..+|--+    ..|-.+|  +|=|..+|+.|-++|-....+
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~~W----~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~   59 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGRRW----TKISKLI--GSRTVLQVKSYARQYFKNKVK   59 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCSCH----HHHHHHH--SSSCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCcCH----HHHHHHc--CCCCHHHHHHHHHHHHHHHHh
Confidence            3445899999999999999999433    6777765  678999999999998666544

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=93.73  E-value=0.16  Score=37.53  Aligned_cols=48  Identities=25%  Similarity=0.411  Sum_probs=40.2

Q ss_pred             CcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585          218 QRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL  271 (387)
Q Consensus       218 ~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl  271 (387)
                      .|-.||+|-..+|++||+.+| +-.    +.|-+.|  +|=|..+++.|-++|-.
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCGFGNW----QDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCTTCH----HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCcH----HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            345799999999999999999 555    7788887  57799999999887754

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=91.59  E-value=0.23  Score=51.18  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=44.9

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhc
Q 016585          216 RKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHT  273 (387)
Q Consensus       216 rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~  273 (387)
                      .+..-+||++-|..|++||.++|--+    +.|-++++-.  |..||++|-++||..+
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGkdw----~~IA~~VgTK--T~~Qvk~fy~~~kkr~  428 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGRDF----QAISDVIGNK--SVVQVKNFFVNYRRRF  428 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTCH----HHHHHHHSSC--CHHHHHHHHHHTTTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHHhCCC--CHHHHHHHHHHHHHHh
Confidence            45567999999999999999999544    7898998876  9999999999998764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=91.33  E-value=0.26  Score=46.70  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=43.2

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhh
Q 016585          215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH  272 (387)
Q Consensus       215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~  272 (387)
                      ..+..-+||+|-++.|++|+..+|--+    ..|-++|  .+=|..+|+.|-++||..
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGKDW----~~IAk~V--gTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGRDF----QAISDVI--GNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSSCH----HHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            345566899999999999999999544    7788875  556999999999999865

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=91.15  E-value=0.54  Score=35.44  Aligned_cols=52  Identities=15%  Similarity=0.296  Sum_probs=43.1

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585          214 PQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY  269 (387)
Q Consensus       214 ~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY  269 (387)
                      ..++.|-.||+|--...+++|+.+| |-.    ..|...|.+.|=|..+++-+-..|
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~   57 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTM   57 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCH----HHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcH----HHHHHHcCcCCCCHHHHHHHHHHH
Confidence            4677888999999999999999999 556    889998876588999998764444

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=90.75  E-value=0.46  Score=34.97  Aligned_cols=48  Identities=21%  Similarity=0.425  Sum_probs=39.6

Q ss_pred             cccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585          219 RRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL  271 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl  271 (387)
                      +-.||+|-.+++++||+.+| +-.    +.|-+.|+. |=|..+++.|-++|-+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W----~~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNW----ADIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCH----HHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            34699999999999999999 655    778888752 5699999999888754

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=89.99  E-value=0.32  Score=39.47  Aligned_cols=59  Identities=22%  Similarity=0.280  Sum_probs=38.0

Q ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCChH------------HHHhHhc---CCCCCHHHHHHhhhhhhhhccCCC
Q 016585          219 RRSWSPELHRRFLHALQQLGGSHAATPK------------QIRELMN---VDGLTNDEVKSHLQKYRLHTRRPS  277 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK------------~IlelM~---V~gLT~~~VkSHLQKYRl~~rr~~  277 (387)
                      .-+|.++|-..|++|+..+-=....+-+            -|.+-+.   -.-=|+.||.||||--|....+..
T Consensus         6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~~~   79 (82)
T 2hzd_A            6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDL   79 (82)
T ss_dssp             SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTTCC
T ss_pred             CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhhhh
Confidence            3489999999999999977511112111            0111111   134689999999999888776643

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=87.39  E-value=1.5  Score=31.94  Aligned_cols=48  Identities=13%  Similarity=0.248  Sum_probs=38.4

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585          216 RKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY  269 (387)
Q Consensus       216 rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY  269 (387)
                      ...|-.||+|-..+++++|.++| +-.    ..|-+.|  +|=|..+++.|-++|
T Consensus         5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            5 SSGKVKWTHEEDEQLRALVRQFGQQDW----KFLASHF--PNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCTTCH----HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHc--cCCCHHHHHHHHHHH
Confidence            44556899999999999999999 444    7777776  577999999776655

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.35  E-value=2.2  Score=33.19  Aligned_cols=47  Identities=17%  Similarity=0.382  Sum_probs=38.4

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCChH---HHHhHhcCCCCCHHHHHHhhhhhhhhc
Q 016585          221 SWSPELHRRFLHALQQLGGSHAATPK---QIRELMNVDGLTNDEVKSHLQKYRLHT  273 (387)
Q Consensus       221 ~WT~ELH~rFv~Av~~LGG~~~AtPK---~IlelM~V~gLT~~~VkSHLQKYRl~~  273 (387)
                      .||.|=++.|+.||..+++   -||.   .|-+.|   |=|-.+|+.|-+++....
T Consensus        10 ~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A           10 EWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence            6999999999999999983   3554   477777   569999999988876554

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=87.34  E-value=1.2  Score=37.25  Aligned_cols=58  Identities=24%  Similarity=0.409  Sum_probs=46.0

Q ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhc--CCCCCHHHHHHhhhhhhhhccCCC
Q 016585          213 QPQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMN--VDGLTNDEVKSHLQKYRLHTRRPS  277 (387)
Q Consensus       213 ~~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~--V~gLT~~~VkSHLQKYRl~~rr~~  277 (387)
                      ...++.|..||+|--...+++|+.+| |.+    +.|+..+.  .+|=|..++|   .|||..+++..
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W----~~I~~~~~~~f~~RT~v~lK---drWrnllk~~~   67 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRW----RDVKLCAFEDADHRTYVDLK---DKWKTLVHTAK   67 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSH----HHHHSSSSSSTTCCCHHHHH---HHHHHHHHTTT
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCh----HHHHHHhccccCCCCHHHHH---HHHHHHHhhcc
Confidence            45788899999999999999999999 356    78888663  4888999999   46777776543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=86.90  E-value=1.2  Score=33.62  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=37.1

Q ss_pred             CCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHh
Q 016585          217 KQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSH  265 (387)
Q Consensus       217 K~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSH  265 (387)
                      +.|..||+|--..++++|+.+| |-.    +.|.+.+.+.|=|..+++-+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~R   54 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNW----AAISKNYPFVNRTAVMIKDR   54 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCch----HHHHhhcCCCCCCHHHHHHH
Confidence            3456899999999999999999 445    78998888888899988843

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=84.29  E-value=2.1  Score=30.51  Aligned_cols=46  Identities=17%  Similarity=0.307  Sum_probs=37.4

Q ss_pred             cccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhh
Q 016585          219 RRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQK  268 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQK  268 (387)
                      |-.||+|-....+++|+.+| |-.    ..|.+.|+..|=|..+++-+-..
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~   48 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRT   48 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcCCCCCCHHHHHHHHHH
Confidence            45799999999999999999 555    88888887557788888865443

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.59  E-value=2.9  Score=30.95  Aligned_cols=52  Identities=13%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhcc
Q 016585          214 PQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR  274 (387)
Q Consensus       214 ~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~r  274 (387)
                      ..|+..-.||+|-|+.|++|+.++|--.    ..|..+  |++=|..+|.-|   |-+..+
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w----~~Ia~~--l~~rt~~~~v~~---Yy~~Kk   58 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHPKNF----GLIASY--LERKSVPDCVLY---YYLTKK   58 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHSTTCH----HHHHHH--CTTSCHHHHHHH---HHHHTC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHH---HHHhcC
Confidence            3556677999999999999999999322    566655  467788888754   444443

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.50  E-value=2.6  Score=31.61  Aligned_cols=47  Identities=19%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhh
Q 016585          215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHL  266 (387)
Q Consensus       215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHL  266 (387)
                      ++..+-.||+|=|+.|.+||.+.|= +   =..|...| |+.-|..+|..+-
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY   51 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence            3444568999999999999999992 1   14444411 5666888886443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=82.27  E-value=6.7  Score=30.53  Aligned_cols=51  Identities=12%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             CcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhc-CCCCCHHHHHHhhhhhhh
Q 016585          218 QRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMN-VDGLTNDEVKSHLQKYRL  271 (387)
Q Consensus       218 ~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~-V~gLT~~~VkSHLQKYRl  271 (387)
                      .+-.||.+-.+.|+.||..+|.   -+|..--.+=. |+|=|..+|+.|-+.+..
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3446999999999999999992   26765433322 478999999999876643

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=81.76  E-value=7  Score=33.48  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=45.5

Q ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhc--CCCCCHHHHHHhhhhhhhhccC
Q 016585          213 QPQRKQRRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMN--VDGLTNDEVKSHLQKYRLHTRR  275 (387)
Q Consensus       213 ~~~rK~Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~--V~gLT~~~VkSHLQKYRl~~rr  275 (387)
                      ...++.|..||+|--...+++|+.+| |.+    +.|+..+.  .+|=|..++|   .|||..++.
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W----~~I~~~~~~~~~~RT~vdlK---dRWrnllk~   83 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRW----RDVKFRAFENVHHRTYVDLK---DKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCH----HHHHHHHHSSSCCCCHHHHH---HHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCCh----HHHHHHhccccCCCCHHHHH---HHHHHHHhh
Confidence            35778888999999999999999999 456    78888653  4888999999   567777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-21

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 85.0 bits (210), Expect = 2e-21
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTR 274
           Q+K R  W+ ELH +FL A+  LG   A  PK+I +LMNVD LT + V SHLQK+R+  +
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERA-VPKKILDLMNVDKLTRENVASHLQKFRVALK 61

Query: 275 RPS 277
           + S
Sbjct: 62  KVS 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	95.53
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	93.94
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	89.83
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	89.21
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	85.42
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	83.06

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.6e-26  Score=177.67  Aligned_cols=62  Identities=48%  Similarity=0.790  Sum_probs=59.0

Q ss_pred             CCCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccCC
Q 016585          214 PQRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRP  276 (387)
Q Consensus       214 ~~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr~  276 (387)
                      ..+|+|++||+|||++||+||++||+ +.|+||.|+++|+|+|||++||+|||||||++++|.
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999999999985 899999999999999999999999999999999874

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.012  Score=42.24  Aligned_cols=51  Identities=24%  Similarity=0.335  Sum_probs=42.6

Q ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhccC
Q 016585          219 RRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRR  275 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~rr  275 (387)
                      ..+||+|-+..|++||..+|.-.    ..|-.+|+  |=|..+|++|-++|.....+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W----~~Ia~~~~--~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRW----TKISKLIG--SRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCH----HHHHHHHS--SSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchH----HHHHHHcC--CCCHHHHHHHHHHHHHHHHh
Confidence            35899999999999999999644    77877765  67999999999998766544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.044  Score=37.61  Aligned_cols=43  Identities=28%  Similarity=0.527  Sum_probs=37.0

Q ss_pred             cCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585          221 SWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY  269 (387)
Q Consensus       221 ~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY  269 (387)
                      .||.|-+.+|++||+.+| |-.    +.|-+.|+  |=|..|++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW----~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNW----QDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCH----HHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccH----HHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999999 334    77888876  55999999999887

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.35  Score=34.47  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=40.4

Q ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhh
Q 016585          217 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRL  271 (387)
Q Consensus       217 K~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl  271 (387)
                      +.+-.||++=...|+++|..+|.-.    ..|-.+|  +|=|..+|+.|-.+|+.
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G~~w----~~Ia~~~--~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYGRDF----QAISDVI--GNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCH----HHHHHHH--SSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCchH----HHHHHHc--CCCCHHHHHHHHHHHHh
Confidence            4455799999999999999999443    7777776  57799999999988764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.27  Score=35.43  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=37.8

Q ss_pred             CCCCcccCCHHHHHHHHHHHHHhcCCCCCChHHHHhHhcCCCCCHHHHHHhhh
Q 016585          215 QRKQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQ  267 (387)
Q Consensus       215 ~rK~Rl~WT~ELH~rFv~Av~~LGG~~~AtPK~IlelM~V~gLT~~~VkSHLQ  267 (387)
                      .++..-.||+|-+..|++||.++|.-.    ..|-++|  +|=|..+|+.|-.
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~~w----~~Ia~~~--~~rt~~q~~~~yy   59 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPKNF----GLIASFL--ERKTVAECVLYYY   59 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTSCS----SSHHHHT--TTSCHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCCcH----HHHHHHc--CCCCHHHHHHHHH
Confidence            445556799999999999999999544    4577764  6789999999954

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.42  E-value=0.67  Score=31.58  Aligned_cols=45  Identities=20%  Similarity=0.343  Sum_probs=36.9

Q ss_pred             cccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhh
Q 016585          219 RRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKY  269 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKY  269 (387)
                      |-.||+|=..+++++|+++| |-.    +.|-+.|  +|=|..+++.|=++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDW----KVIANYL--PNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCH----HHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCH----HHHHHHH--CCCCHHHHHHHHHhh
Confidence            34799999999999999999 444    7788877  577999999886665

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.06  E-value=1.2  Score=30.92  Aligned_cols=48  Identities=19%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             cccCCHHHHHHHHHHHHHhc-CCCCCChHHHHhHhcCCCCCHHHHHHhhhhhhhhc
Q 016585          219 RRSWSPELHRRFLHALQQLG-GSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLHT  273 (387)
Q Consensus       219 Rl~WT~ELH~rFv~Av~~LG-G~~~AtPK~IlelM~V~gLT~~~VkSHLQKYRl~~  273 (387)
                      |..||+|--..++++|+.+| |-.    ..|.+.+.+.+=|..+++-   +||..+
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~W----~~I~~~~~~~~Rt~~q~k~---Rwrn~~   50 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGNW----AAISKNYPFVNRTAVMIKD---RWRTMK   50 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHH---HHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCChH----HHHHhhcCCCCcCHHHHHH---HHHHHh
Confidence            45899999999999999999 555    7899887777888888874   455443