Citrus Sinensis ID: 016605
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | 2.2.26 [Sep-21-2011] | |||||||
| P54967 | 378 | Biotin synthase OS=Arabid | yes | no | 0.976 | 0.997 | 0.818 | 0.0 | |
| Q11S94 | 337 | Biotin synthase OS=Cytoph | yes | no | 0.826 | 0.946 | 0.651 | 1e-124 | |
| O59778 | 363 | Biotin synthase OS=Schizo | yes | no | 0.800 | 0.851 | 0.604 | 1e-113 | |
| A5FLT1 | 363 | Biotin synthase OS=Flavob | yes | no | 0.857 | 0.911 | 0.560 | 1e-111 | |
| Q8YVQ3 | 335 | Biotin synthase OS=Nostoc | yes | no | 0.813 | 0.937 | 0.586 | 1e-111 | |
| Q3M4U9 | 335 | Biotin synthase OS=Anabae | yes | no | 0.813 | 0.937 | 0.586 | 1e-111 | |
| B2J914 | 335 | Biotin synthase OS=Nostoc | yes | no | 0.818 | 0.943 | 0.579 | 1e-109 | |
| A6GW77 | 362 | Biotin synthase OS=Flavob | yes | no | 0.810 | 0.864 | 0.560 | 1e-109 | |
| A0M7A9 | 363 | Biotin synthase OS=Gramel | yes | no | 0.805 | 0.856 | 0.567 | 1e-108 | |
| P32451 | 375 | Biotin synthase, mitochon | yes | no | 0.860 | 0.885 | 0.524 | 1e-105 |
| >sp|P54967|BIOB_ARATH Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/385 (81%), Positives = 344/385 (89%), Gaps = 8/385 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
MM RS+ RSQ LRPS L S+ S SAA+ EAERTIREGPR+DWS+D+IKS
Sbjct: 1 MMLVRSVFRSQ----LRPSVSG-GLQSASCYSSLSAASAEAERTIREGPRNDWSRDEIKS 55
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+
Sbjct: 56 VYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQR 115
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLG
Sbjct: 116 LMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLG 175
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
M+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL HVR+AGINVCSGGI
Sbjct: 176 MIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGI 235
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300
IGLGEAEEDR+GLLHTLATLP+HPESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARI
Sbjct: 236 IGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARI 295
Query: 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
VMPKAMVRLSAGRVRFSM EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK LGL P
Sbjct: 296 VMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIP 355
Query: 361 KAPSFHEGEANVSEAESCQEAVSHS 385
K PSF E + SE+E+C++ S S
Sbjct: 356 KPPSFSEDD---SESENCEKVASAS 377
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 6 |
| >sp|Q11S94|BIOB_CYTH3 Biotin synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/321 (65%), Positives = 261/321 (81%), Gaps = 2/321 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R++W+K++I +IY+SP+LDL++ GA VHR H+ +EVQ CTLLSIKTGGC EDCSYCPQ+
Sbjct: 5 RNNWTKEEISAIYNSPILDLMYRGATVHREFHDPQEVQVCTLLSIKTGGCPEDCSYCPQA 64
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+RY T VK +KLM V+ +A +AKE+GSTRFCMGAAWR+ K +F+++++ VK +
Sbjct: 65 ARYHTDVKVEKLMDVKDVLNSALEAKESGSTRFCMGAAWREVRDNK-DFDKVIDMVKGVS 123
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MGMEVCCTLGML QA +LK AGL AYNHNLDTS E Y K+ITTR+YD+RLETL +VR
Sbjct: 124 TMGMEVCCTLGMLTPEQADKLKDAGLYAYNHNLDTSAEHYDKVITTRTYDDRLETLDNVR 183
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
A I+VCSGGIIG+GE+ DRVG+LHTLA + HPESVP+NAL+ V+GTPL+DQ V +W
Sbjct: 184 NAKISVCSGGIIGMGESHGDRVGMLHTLANMVEHPESVPVNALVPVEGTPLEDQPRVSVW 243
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
EM+RMIATARI+MPKAMVRLSAGRVR + EQALCFLAGANSIF G+KLLTTPN + +AD
Sbjct: 244 EMVRMIATARIIMPKAMVRLSAGRVRMNTEEQALCFLAGANSIFAGDKLLTTPNPEVNAD 303
Query: 350 QLMFKVLGLTPKAPSFHEGEA 370
+ MF+VL L P+ SF G+A
Sbjct: 304 KEMFQVLNLKPRQ-SFKNGDA 323
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|O59778|BIOB_SCHPO Biotin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bio2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/311 (60%), Positives = 243/311 (78%), Gaps = 2/311 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R++W++++I+ IYD+P++DL+F A +HR H+ ++VQQCTLLSIKTGGC+EDC YC QS
Sbjct: 20 RNNWTREEIQKIYDTPLIDLIFRAASIHRKFHDPKKVQQCTLLSIKTGGCTEDCKYCAQS 79
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY+TGVK KLM D V++ A+ AK GSTRFCMG+AWRD GR F ILE +K++R
Sbjct: 80 SRYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVR 139
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
M MEVC TLGML + QA ELK AGLTAYNHNLDTSRE+YSKII+TR+YDERL T+ ++R
Sbjct: 140 SMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLDTSREYYSKIISTRTYDERLNTIDNLR 199
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVE 287
+AG+ VCSGGI+GLGE + DRVGL+H+LAT+PTHPESVP N L+ + GTP+ D ++ +
Sbjct: 200 KAGLKVCSGGILGLGEKKHDRVGLIHSLATMPTHPESVPFNLLVPIPGTPVGDAVKERLP 259
Query: 288 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFD 347
I +R IATARI MPK ++R +AGR S EQAL F+AGAN++FTGEK+LTTP +D
Sbjct: 260 IHPFLRSIATARICMPKTIIRFAAGRNTCSESEQALAFMAGANAVFTGEKMLTTPAVSWD 319
Query: 348 ADQLMFKVLGL 358
+D +F GL
Sbjct: 320 SDSQLFYNWGL 330
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A5FLT1|BIOB_FLAJ1 Biotin synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/332 (56%), Positives = 243/332 (73%), Gaps = 1/332 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
+H+W+KD+I +IY+ P++DLL+ A +HR H+ VQ TLLSIKTGGC EDC YCPQ+
Sbjct: 6 KHNWTKDEIIAIYNKPLMDLLYEAATIHRQQHDPNVVQVSTLLSIKTGGCPEDCGYCPQA 65
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+RY+TGV+G LMT V A +AK GS+R CMGAAWR+ + F+Q+LE V+ I
Sbjct: 66 ARYNTGVEGNDLMTVSQVKAQALRAKSNGSSRVCMGAAWRN-VKDGEEFDQVLEMVRTIN 124
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
+ MEVCCTLGML ++QA L +AGL AYNHNLDTS E+Y +I+TR +++RL+T+++VR
Sbjct: 125 KLDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDTSEEYYKDVISTRGFEDRLQTIENVR 184
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
+ + VCSGGIIG+GE+ EDR G+L L+TL PESVPINAL+AV+GTP++++KPVEIW
Sbjct: 185 KTNVTVCSGGIIGMGESIEDRAGMLVALSTLNPQPESVPINALVAVEGTPMEEEKPVEIW 244
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
EMIRM+AT RIVMP+ VRLSAGR S QA+CF AGANSIF G+KLLTTPN D + D
Sbjct: 245 EMIRMVATTRIVMPETQVRLSAGRTNMSREGQAMCFFAGANSIFAGDKLLTTPNPDVNED 304
Query: 350 QLMFKVLGLTPKAPSFHEGEANVSEAESCQEA 381
MF+ LG+ + P + EA Q A
Sbjct: 305 MKMFETLGMVAQKPFIKIMQPKTVEAADSQFA 336
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (taxid: 376686) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q8YVQ3|BIOB_NOSS1 Biotin synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/319 (58%), Positives = 243/319 (76%), Gaps = 5/319 (1%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R+DW K +I+++YD+P+L+L++ A VHR HN +++Q C L+SIKTG C EDCSYC QS
Sbjct: 7 RYDWHKAEIRAVYDTPLLELIYQAASVHRQFHNPKQIQVCKLISIKTGACPEDCSYCAQS 66
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY T VK Q L+ K V++ AQ AK+ G +R CMGAAWR+ + + F+++LE VKD+
Sbjct: 67 SRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVCMGAAWRE-VRDNSQFDRVLEMVKDVT 125
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+EVCCTLGML QA +L+ AGL AYNHNLDTS ++YS IITTR+Y +RL T+++VR
Sbjct: 126 DMGLEVCCTLGMLTSEQAKKLETAGLYAYNHNLDTSSDYYSTIITTRTYGDRLNTIENVR 185
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
+ + VCSGGI+GLGE+ +DRV +L TLATL HPESVPIN L V+GTPL+DQ V +W
Sbjct: 186 QTNVTVCSGGILGLGESIDDRVAMLQTLATLNPHPESVPINILSQVEGTPLEDQPDVPVW 245
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE--KLL--TTPNND 345
+++RMIATARIVMP + VRLSAGR R S EQA CF+AGANSIF+ + K+L TTP D
Sbjct: 246 DVVRMIATARIVMPTSDVRLSAGRARLSQVEQAFCFMAGANSIFSSDDNKMLTVTTPCPD 305
Query: 346 FDADQLMFKVLGLTPKAPS 364
+DADQ M +LGL + PS
Sbjct: 306 YDADQEMLNLLGLEMRPPS 324
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q3M4U9|BIOB_ANAVT Biotin synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/319 (58%), Positives = 242/319 (75%), Gaps = 5/319 (1%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R+DW +I+++YD P+L+L++ A VHR HN +++Q C L+SIKTGGC EDCSYC QS
Sbjct: 7 RYDWHTAEIRAVYDMPLLELIYQAASVHRQFHNPKQIQVCKLISIKTGGCPEDCSYCAQS 66
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY T VK Q L+ K V++ AQ AK+ G +R CMGAAWR+ + + F+++LE VKD+
Sbjct: 67 SRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVCMGAAWRE-VRDNSQFDRVLEMVKDVT 125
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+EVCCTLGML QA +L+ AGL AYNHNLDTS ++YS IITTR+Y +RL T+++VR
Sbjct: 126 DMGLEVCCTLGMLTTDQAKKLETAGLYAYNHNLDTSSDYYSTIITTRTYSDRLNTIENVR 185
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
+ + VCSGGI+GLGE+ +DRV +L TLATL HPESVPIN L V+GTPL+DQ V +W
Sbjct: 186 QTNVTVCSGGILGLGESIDDRVAMLQTLATLNPHPESVPINILSQVEGTPLEDQPDVPVW 245
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE--KLL--TTPNND 345
+++RMIATARIVMP + VRLSAGR R S EQA CF+AGANSIF+ + K+L TTP D
Sbjct: 246 DVVRMIATARIVMPTSDVRLSAGRARLSQVEQAFCFMAGANSIFSSDDNKMLTVTTPCPD 305
Query: 346 FDADQLMFKVLGLTPKAPS 364
+DADQ M +LGL + PS
Sbjct: 306 YDADQEMLNLLGLEMRPPS 324
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2J914|BIOB_NOSP7 Biotin synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/321 (57%), Positives = 243/321 (75%), Gaps = 5/321 (1%)
Query: 48 GPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCP 107
G R+DW + +I++IY++P+L+L++ A VHR H+ ++Q C L+SIKTGGC EDCSYC
Sbjct: 3 GIRYDWQELEIRAIYNTPLLELIYQAASVHRQYHDPTKIQVCKLISIKTGGCPEDCSYCA 62
Query: 108 QSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167
QSSRY T VK + L+ K+ V+ AQKAKE G +R CMGAAWR+ + + F ++LE VKD
Sbjct: 63 QSSRYKTEVKAEALLEKETVVNIAQKAKETGVSRICMGAAWRE-VRDNSQFEEVLEMVKD 121
Query: 168 IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
I MG+EVCCTLGML +QA +L++AGL AYNHNLDTS+E+YS IITTR+Y +RL T+++
Sbjct: 122 ITAMGLEVCCTLGMLTANQARKLEEAGLYAYNHNLDTSQEYYSTIITTRTYSDRLNTIEN 181
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVE 287
VR+ + VCSGGI+GLGE +DRVG+L TLA L HPESVPIN L V GTPL++Q V
Sbjct: 182 VRQTNVTVCSGGILGLGETVDDRVGMLQTLANLHPHPESVPINILSQVPGTPLENQPDVP 241
Query: 288 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE--KLL--TTPN 343
IW+++RMIATARI+MP + VRLSAGR R S EQA CF+AGANSIF+ + K+L TTP
Sbjct: 242 IWDIVRMIATARILMPASDVRLSAGRARLSQVEQAFCFMAGANSIFSSDDNKMLTVTTPC 301
Query: 344 NDFDADQLMFKVLGLTPKAPS 364
D+D D+ M +LGL + PS
Sbjct: 302 PDYDTDREMLNLLGLGMRPPS 322
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A6GW77|BIOB_FLAPJ Biotin synthase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust.
Identities = 176/314 (56%), Positives = 239/314 (76%), Gaps = 1/314 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R++W+K++I +IY+ P++DLL+ A +HR H+ VQ TLLSIKTGGC EDC YCPQ+
Sbjct: 5 RNNWTKEEIIAIYNKPLMDLLYEAASIHREYHDPNVVQVSTLLSIKTGGCPEDCGYCPQA 64
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+RY T ++G LM+ V A +AK +GS+R CMGAAWR+ + F+Q+LE V+ I
Sbjct: 65 ARYHTDIEGNDLMSVQQVKAQALRAKSSGSSRVCMGAAWRN-VKDGPEFDQVLEMVRTIN 123
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
+ MEVCCTLGM+ ++QA L +AGL AYNHNLDTS E+Y ++I+TR +++R+ET+ +VR
Sbjct: 124 KLDMEVCCTLGMITENQAHRLAEAGLYAYNHNLDTSEEYYKEVISTRGFEDRIETIANVR 183
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
+ + VCSGGIIG+GE+ DR G+L L+TL PESVPINAL+AV+GTP++++KPVEIW
Sbjct: 184 KTNVTVCSGGIIGMGESIGDRAGMLVALSTLSPQPESVPINALVAVEGTPMEEEKPVEIW 243
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
EMIRM+AT RI+MP+ VRLSAGR+ + QA+CF AGANSIF G+KLLTTPN D + D
Sbjct: 244 EMIRMVATTRIIMPETQVRLSAGRMNMTREGQAMCFFAGANSIFAGDKLLTTPNPDVNED 303
Query: 350 QLMFKVLGLTPKAP 363
MF++LGL P+ P
Sbjct: 304 MKMFEMLGLNPQKP 317
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) (taxid: 402612) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A0M7A9|BIOB_GRAFK Biotin synthase OS=Gramella forsetii (strain KT0803) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 177/312 (56%), Positives = 233/312 (74%), Gaps = 1/312 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
+HDW+K++I IY+ P ++LL+ A +HR H+ VQ TLLSIKTGGC EDC YCPQ+
Sbjct: 4 KHDWTKEEILEIYNKPFMELLYDAATIHREHHDPNTVQVSTLLSIKTGGCPEDCGYCPQA 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+RY T ++G LM+ + V A +AK +GS+R CMGAAWR+ + F+ +LE V+ I
Sbjct: 64 ARYHTDLEGNDLMSVNQVKAQALRAKASGSSRVCMGAAWRN-VKDGEEFDNVLEMVRSIN 122
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
+ MEVCCTLGML ++QA L +AGL AYNHNLD+S E+Y ++I+TR Y +RL+T+ +VR
Sbjct: 123 KLDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDSSEEYYKEVISTRGYQDRLDTIGNVR 182
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
+ + VCSGGIIG+GE+E DR G+L L+TL PESVPINAL+ V+GTP+++Q+PV IW
Sbjct: 183 KTNVTVCSGGIIGMGESEADRAGMLVALSTLNPQPESVPINALVPVEGTPMEEQEPVPIW 242
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
EMIRM+AT RIVMP+ VRLSAGR + S QA+CF AGANSIF G+KLLTTPN D D
Sbjct: 243 EMIRMVATTRIVMPETQVRLSAGRTQMSREGQAMCFFAGANSIFAGDKLLTTPNPDVSED 302
Query: 350 QLMFKVLGLTPK 361
MFK+LGL P+
Sbjct: 303 MEMFKMLGLNPQ 314
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Gramella forsetii (strain KT0803) (taxid: 411154) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|P32451|BIOB_YEAST Biotin synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIO2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/341 (52%), Positives = 253/341 (74%), Gaps = 9/341 (2%)
Query: 27 SSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQV-HRHAHNFRE 85
++ S +++ A++ ++ E P H W+K +K IY +P+L+L H AQ+ HR H+ +
Sbjct: 28 TTASSEASTLGALQYALSLDE-PSHSWTKSQLKEIYHTPLLELT-HAAQLQHRKWHDPTK 85
Query: 86 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 145
VQ CTL++IK+GGCSEDC YC QSSR DTG+K +K++ D V++ A++AK GSTRFC+G
Sbjct: 86 VQLCTLMNIKSGGCSEDCKYCAQSSRNDTGLKAEKMVKVDEVIKEAEEAKRNGSTRFCLG 145
Query: 146 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205
AAWRD GRK+ +I E V + DMG+E C TLGM+++ QA +LK AGLTAYNHN+DTS
Sbjct: 146 AAWRDMKGRKSAMKRIQEMVTKVNDMGLETCVTLGMVDQDQAKQLKDAGLTAYNHNIDTS 205
Query: 206 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 265
RE YSK+ITTR+YD+RL+T+K+V+E+GI C+GGI+GLGE+E+D +G ++TL+ + HPE
Sbjct: 206 REHYSKVITTRTYDDRLQTIKNVQESGIKACTGGILGLGESEDDHIGFIYTLSNMSPHPE 265
Query: 266 SVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP 319
S+PIN L+A+KGTP+ ++ K ++ E++R IATARIVMPKA++RL+AGR
Sbjct: 266 SLPINRLVAIKGTPMAEELADPKSKKLQFDEILRTIATARIVMPKAIIRLAAGRYTMKET 325
Query: 320 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
EQ +CF+AG NSIFTG+K+LTT N +D D+ M GL P
Sbjct: 326 EQFVCFMAGCNSIFTGKKMLTTMCNGWDEDKAMLAKWGLQP 366
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| 255577757 | 375 | biotin synthase, putative [Ricinus commu | 0.971 | 1.0 | 0.818 | 0.0 | |
| 255637113 | 374 | unknown [Glycine max] | 0.935 | 0.965 | 0.876 | 0.0 | |
| 225433839 | 381 | PREDICTED: biotin synthase [Vitis vinife | 0.981 | 0.994 | 0.855 | 0.0 | |
| 356538487 | 374 | PREDICTED: biotin synthase-like [Glycine | 0.932 | 0.962 | 0.878 | 0.0 | |
| 297828031 | 377 | hypothetical protein ARALYDRAFT_903720 [ | 0.974 | 0.997 | 0.833 | 0.0 | |
| 357474135 | 377 | Biotin synthase [Medicago truncatula] gi | 0.974 | 0.997 | 0.805 | 0.0 | |
| 224132680 | 391 | predicted protein [Populus trichocarpa] | 0.898 | 0.887 | 0.846 | 0.0 | |
| 114324485 | 375 | biotin synthase [Brassica rapa subsp. pe | 0.875 | 0.901 | 0.879 | 0.0 | |
| 15224273 | 378 | biotin synthase [Arabidopsis thaliana] g | 0.976 | 0.997 | 0.818 | 0.0 | |
| 388519677 | 377 | unknown [Medicago truncatula] | 0.974 | 0.997 | 0.800 | 0.0 |
| >gi|255577757|ref|XP_002529753.1| biotin synthase, putative [Ricinus communis] gi|223530751|gb|EEF32619.1| biotin synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/386 (81%), Positives = 348/386 (90%), Gaps = 11/386 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
M S RS+ R Q+ LRPS F YS+SAAAI+AERTI+EGPR+DW++ +IK+
Sbjct: 1 MFSVRSIFRPQQ---LRPSFVF--------SYSSSAAAIQAERTIKEGPRNDWTRQEIKN 49
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRH NFREVQQCTLLSIKTGGCSEDCSYCPQSSRY+TG+K QK
Sbjct: 50 VYDSPLLDLLFHGAQVHRHFQNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYNTGLKAQK 109
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LMTKD V+QAA++AKEAGSTRFCMGAAWRDTIGRKTNFNQIL+YVK+IRDMGMEVCCTLG
Sbjct: 110 LMTKDDVLQAAKRAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIRDMGMEVCCTLG 169
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
MLEK QA ELKKAGLTAYNHNLDTSRE+Y II+TRSYDERL+TL+HVRE GINVCSGGI
Sbjct: 170 MLEKQQAAELKKAGLTAYNHNLDTSREYYPNIISTRSYDERLKTLEHVREVGINVCSGGI 229
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300
IGLGEAEEDRVGLLHTL+TLP HPESVPINAL+AVKGTPL+DQKPVEIWEMIRMIATARI
Sbjct: 230 IGLGEAEEDRVGLLHTLSTLPMHPESVPINALIAVKGTPLEDQKPVEIWEMIRMIATARI 289
Query: 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
+MPKAMVRLSAGRVRFS+ EQALCFL+GANSIFTGEKLLTTPNNDFDADQLMFK+LGL P
Sbjct: 290 IMPKAMVRLSAGRVRFSIAEQALCFLSGANSIFTGEKLLTTPNNDFDADQLMFKLLGLIP 349
Query: 361 KAPSFHEGEANVSEAESCQEAVSHSG 386
KAPSF E E E+E+CQEAVS SG
Sbjct: 350 KAPSFPEDEERALESENCQEAVSSSG 375
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255637113|gb|ACU18888.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/363 (87%), Positives = 344/363 (94%), Gaps = 2/363 (0%)
Query: 12 RSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLF 71
R + RPS ALHSS + SASAAAI+AERTI+EGPR+DWS+D +KSIYDSP+LDLLF
Sbjct: 5 RPIFRRPS--LWALHSSYAYSSASAAAIQAERTIKEGPRNDWSRDQVKSIYDSPILDLLF 62
Query: 72 HGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAA 131
HGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSS+YDTGVKGQ+LM K+AV+QAA
Sbjct: 63 HGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKEAVLQAA 122
Query: 132 QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELK 191
+KAKEAGSTRFCMGAAWRDT+GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK QA+ELK
Sbjct: 123 KKAKEAGSTRFCMGAAWRDTLGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELK 182
Query: 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 251
KAGLTAYNHNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGGIIGLGEAEEDRV
Sbjct: 183 KAGLTAYNHNLDTSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRV 242
Query: 252 GLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA 311
GLLHTL+TLPTHPESVPINAL+AVKGTPL+DQKPVEIWEMIRMIATARI+MPKAMVRLSA
Sbjct: 243 GLLHTLSTLPTHPESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIIMPKAMVRLSA 302
Query: 312 GRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEAN 371
GRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL PKAPS +EGE N
Sbjct: 303 GRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSLNEGETN 362
Query: 372 VSE 374
V+E
Sbjct: 363 VTE 365
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433839|ref|XP_002263125.1| PREDICTED: biotin synthase [Vitis vinifera] gi|297743757|emb|CBI36640.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/380 (85%), Positives = 350/380 (92%), Gaps = 1/380 (0%)
Query: 7 LLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPV 66
+LR R+ LRPS L SS S YS+SAAA+EAER IR+GPR+DW++ +IKSIYDSP+
Sbjct: 3 VLRFTRAY-LRPSIILLQSSSSFSSYSSSAAAVEAERAIRDGPRNDWTRPEIKSIYDSPL 61
Query: 67 LDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126
LDLLFHGAQVHRHAHNFREVQQCTLLS+KTGGCSEDCSYCPQSSRY TGVK Q+LM KDA
Sbjct: 62 LDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYSTGVKAQRLMNKDA 121
Query: 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ 186
V+QAAQKAKEAGSTRFCMGAAWRDT+GRKTNFNQILEYVK+IRDMGMEVCCTLGMLEK Q
Sbjct: 122 VLQAAQKAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRDMGMEVCCTLGMLEKQQ 181
Query: 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA 246
AIELKKAGLTAYNHNLDTSRE+Y II TRSYDERLETL+ VREAGINVCSGGIIGLGEA
Sbjct: 182 AIELKKAGLTAYNHNLDTSREYYPNIIRTRSYDERLETLQLVREAGINVCSGGIIGLGEA 241
Query: 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 306
EEDRVGLLHTLATLPTHPESVPINALLAVKGTPL+DQKPVEIWEM+RMIATARIVMPKAM
Sbjct: 242 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAM 301
Query: 307 VRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFH 366
VRLSAGRVRFS+PEQALCFLAGANSIFTG+KLLTTPNNDFDADQ MFK+LGL PKAPSF
Sbjct: 302 VRLSAGRVRFSVPEQALCFLAGANSIFTGDKLLTTPNNDFDADQQMFKLLGLIPKAPSFD 361
Query: 367 EGEANVSEAESCQEAVSHSG 386
E A SEAE+C++AVS SG
Sbjct: 362 EDVAKTSEAENCEQAVSGSG 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538487|ref|XP_003537735.1| PREDICTED: biotin synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/362 (87%), Positives = 343/362 (94%), Gaps = 2/362 (0%)
Query: 24 ALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNF 83
ALHSS + SASAAAI+AER I+EGPR+DWS+D +KSIYDSP+LDLLFHGAQVHRHAHNF
Sbjct: 15 ALHSSYAYSSASAAAIQAERAIKEGPRNDWSRDQVKSIYDSPILDLLFHGAQVHRHAHNF 74
Query: 84 REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 143
REVQQCTLLSIKTGGCSEDCSYCPQSS+YDTGVKGQ+LM K+AV+QAA+KAKEAGSTRFC
Sbjct: 75 REVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKEAVLQAAKKAKEAGSTRFC 134
Query: 144 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203
MGAAWRDT+GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK QA+ELKKAGLTAYNHNLD
Sbjct: 135 MGAAWRDTLGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLD 194
Query: 204 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 263
TSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGGIIGLGEAEEDRVGLLHTL+TLPTH
Sbjct: 195 TSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTH 254
Query: 264 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL 323
PESVPINAL+AVKGTPL+DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL
Sbjct: 255 PESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL 314
Query: 324 CFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVS 383
CFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL PKAPS HEGE +V+ E +EA S
Sbjct: 315 CFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSLHEGETSVT--EDYKEAAS 372
Query: 384 HS 385
S
Sbjct: 373 SS 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828031|ref|XP_002881898.1| hypothetical protein ARALYDRAFT_903720 [Arabidopsis lyrata subsp. lyrata] gi|297327737|gb|EFH58157.1| hypothetical protein ARALYDRAFT_903720 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/385 (83%), Positives = 345/385 (89%), Gaps = 9/385 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
MM RS+ RS+ +RPS S SCYS+SAA+ EAERTIREGPR+DWSKD+IKS
Sbjct: 1 MMLVRSVFRSR----IRPSVS--GGLQSVSCYSSSAASAEAERTIREGPRNDWSKDEIKS 54
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSPVLDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+
Sbjct: 55 VYDSPVLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQR 114
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEY+K+IR MGMEVCCTLG
Sbjct: 115 LMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYIKEIRGMGMEVCCTLG 174
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
M+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL+HVREAGINVCSGGI
Sbjct: 175 MIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEHVREAGINVCSGGI 234
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300
IGLGEAEEDRVGLLHTLATLP HPESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARI
Sbjct: 235 IGLGEAEEDRVGLLHTLATLPMHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARI 294
Query: 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
VMPKAMVRLSAGRVRFSM EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK LGL P
Sbjct: 295 VMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIP 354
Query: 361 KAPSFHEGEANVSEAESCQEAVSHS 385
K PSF E + SEAE+C + S S
Sbjct: 355 KPPSFSE---DNSEAENCDKVASAS 376
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474135|ref|XP_003607352.1| Biotin synthase [Medicago truncatula] gi|355508407|gb|AES89549.1| Biotin synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/386 (80%), Positives = 345/386 (89%), Gaps = 10/386 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYS-ASAAAIEAERTIREGPRHDWSKDDIK 59
M R +LRSQ S+ + + C+ +S +SAAAI+AE+TI+ GPR+DW+KD++K
Sbjct: 1 MFWLRPILRSQ-------SRSSIWVLQHCNSFSTSSAAAIQAEKTIQNGPRNDWTKDEVK 53
Query: 60 SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQ 119
SIYDSP+LDLLFHGAQVHRHAHNFREVQQCTLLS+KTGGCSEDCSYCPQSSRYDTG+KGQ
Sbjct: 54 SIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQ 113
Query: 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL 179
KL+ KDAV+QAA KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK+I+ MGMEVCCTL
Sbjct: 114 KLLNKDAVLQAAVKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIKGMGMEVCCTL 173
Query: 180 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG 239
GML+K QA ELKKAGLTAYNHNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGG
Sbjct: 174 GMLDKDQAGELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGG 233
Query: 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 299
IIGLGEAE+DRVGLLHTL+TLPTHPESVPINAL+AVKGTPLQDQKPVEIWEMIRMIATAR
Sbjct: 234 IIGLGEAEDDRVGLLHTLSTLPTHPESVPINALIAVKGTPLQDQKPVEIWEMIRMIATAR 293
Query: 300 IVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLT 359
I MPKAMVRLSAGRVRFS+PEQALCFLAGANSIF GEKLLTT NNDFDADQLMFKVLGL
Sbjct: 294 ITMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFAGEKLLTTANNDFDADQLMFKVLGLL 353
Query: 360 PKAPSFHEGEANVSEAESCQEAVSHS 385
PKAPS + E N EAE+ +EA S S
Sbjct: 354 PKAPSLDDDETN--EAENYKEAASSS 377
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132680|ref|XP_002327854.1| predicted protein [Populus trichocarpa] gi|222837263|gb|EEE75642.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/359 (84%), Positives = 329/359 (91%), Gaps = 12/359 (3%)
Query: 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGC 99
+AE+TI++GPR+DW++++IK +YDSP+LDLLFHGAQVHR+AHNFREVQQCTLLSIKTGGC
Sbjct: 33 QAEKTIKDGPRNDWTREEIKDVYDSPLLDLLFHGAQVHRYAHNFREVQQCTLLSIKTGGC 92
Query: 100 SEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 159
SEDCSYCPQSSRYDTGVK Q+LMTK+ VM+AA++AKEAGSTRFCMGAAWRDTIGRKTNFN
Sbjct: 93 SEDCSYCPQSSRYDTGVKAQRLMTKETVMEAAKRAKEAGSTRFCMGAAWRDTIGRKTNFN 152
Query: 160 QILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYD 219
QIL+YVKDIRDMGMEVCCTLGMLEK QA+ELKKAGLTAYNHNLDTSRE+Y IITTRSYD
Sbjct: 153 QILDYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLDTSREYYPNIITTRSYD 212
Query: 220 ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279
ERLETL+HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL++VKGTP
Sbjct: 213 ERLETLQHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVSVKGTP 272
Query: 280 LQDQK------------PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA 327
LQ+QK PVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSM EQALCFLA
Sbjct: 273 LQEQKVLLIPVSYKFSMPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLA 332
Query: 328 GANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHSG 386
GANSIFTGEKLLTTPNND+DADQLMFKVLGL PKAPSF E EAE CQEAVS SG
Sbjct: 333 GANSIFTGEKLLTTPNNDYDADQLMFKVLGLIPKAPSFSGEEEKACEAEQCQEAVSSSG 391
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|114324485|gb|ABI63585.1| biotin synthase [Brassica rapa subsp. pekinensis] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/341 (87%), Positives = 323/341 (94%), Gaps = 3/341 (0%)
Query: 43 RTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSED 102
RTIREGPR+DWSKD+IK++YDSPVLDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSED
Sbjct: 36 RTIREGPRNDWSKDEIKAVYDSPVLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSED 95
Query: 103 CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 162
CSYCPQSSRYDTGVK Q+LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNFNQIL
Sbjct: 96 CSYCPQSSRYDTGVKAQRLMSKDAVIVAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQIL 155
Query: 163 EYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERL 222
EY+K+IR MGMEVCCTLGM+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYDERL
Sbjct: 156 EYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDERL 215
Query: 223 ETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282
ETL+HVR+AGINVCSGGIIGLGEAEEDRVGLLHTLATLP+HPESVPINALLAVKGTPL+D
Sbjct: 216 ETLEHVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLPSHPESVPINALLAVKGTPLED 275
Query: 283 QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP 342
QKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP
Sbjct: 276 QKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP 335
Query: 343 NNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVS 383
NNDFDADQLMFK LGL PK PSF E + SE+E+C++ S
Sbjct: 336 NNDFDADQLMFKTLGLIPKPPSFSEDD---SESENCEKVAS 373
|
Source: Brassica rapa subsp. pekinensis Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224273|ref|NP_181864.1| biotin synthase [Arabidopsis thaliana] gi|1705463|sp|P54967.1|BIOB_ARATH RecName: Full=Biotin synthase gi|1045316|gb|AAA80226.1| biotin sythase [Arabidopsis thaliana] gi|1403662|gb|AAC49445.1| BIO2 protein [Arabidopsis thaliana] gi|1769457|gb|AAB39953.1| biotin synthase [Arabidopsis thaliana] gi|2288983|gb|AAB64312.1| biotin synthase (Bio B) [Arabidopsis thaliana] gi|90093314|gb|ABD85170.1| At2g43360 [Arabidopsis thaliana] gi|330255162|gb|AEC10256.1| biotin synthase [Arabidopsis thaliana] gi|1589016|prf||2209438A biotin synthase | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/385 (81%), Positives = 344/385 (89%), Gaps = 8/385 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
MM RS+ RSQ LRPS L S+ S SAA+ EAERTIREGPR+DWS+D+IKS
Sbjct: 1 MMLVRSVFRSQ----LRPSVSG-GLQSASCYSSLSAASAEAERTIREGPRNDWSRDEIKS 55
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+
Sbjct: 56 VYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQR 115
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLG
Sbjct: 116 LMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLG 175
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
M+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL HVR+AGINVCSGGI
Sbjct: 176 MIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGI 235
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300
IGLGEAEEDR+GLLHTLATLP+HPESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARI
Sbjct: 236 IGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARI 295
Query: 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
VMPKAMVRLSAGRVRFSM EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK LGL P
Sbjct: 296 VMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIP 355
Query: 361 KAPSFHEGEANVSEAESCQEAVSHS 385
K PSF E + SE+E+C++ S S
Sbjct: 356 KPPSFSEDD---SESENCEKVASAS 377
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388519677|gb|AFK47900.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/386 (80%), Positives = 343/386 (88%), Gaps = 10/386 (2%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYS-ASAAAIEAERTIREGPRHDWSKDDIK 59
M +LRSQ S+ + + C+ +S +SAAAI+AE+TI+ GPR+DW+KD++K
Sbjct: 1 MFWLGPILRSQ-------SRSSIWVLQHCNSFSTSSAAAIQAEKTIQNGPRNDWTKDEVK 53
Query: 60 SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQ 119
SIYDSP+LDLLFHGAQVHRHAHNFREVQQCTLLS+KTGGCSEDCSYCPQSSRYDTG+KGQ
Sbjct: 54 SIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQ 113
Query: 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL 179
KL+ KDAV+QAA KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK+I+ MGMEVCCT
Sbjct: 114 KLLNKDAVLQAAVKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIKGMGMEVCCTH 173
Query: 180 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG 239
GML+K QA ELKKAGLTAYNHNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGG
Sbjct: 174 GMLDKDQAGELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLKTLEFVRDAGINVCSGG 233
Query: 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 299
IIGLGEAE+DRVGLLHTL+TLPTHPESVPINAL+AVKGTPLQDQKPVEIWEMIRMIATAR
Sbjct: 234 IIGLGEAEDDRVGLLHTLSTLPTHPESVPINALIAVKGTPLQDQKPVEIWEMIRMIATAR 293
Query: 300 IVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLT 359
I MPKAMVRLSAGRVRFS+PEQALCFLAGANSIF GEKLLTT NNDFDADQLMFKVLGL
Sbjct: 294 ITMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFAGEKLLTTANNDFDADQLMFKVLGLL 353
Query: 360 PKAPSFHEGEANVSEAESCQEAVSHS 385
PKAPS + E N EAE+ +EA S S
Sbjct: 354 PKAPSLDDDETN--EAENYKEAASSS 377
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| TAIR|locus:2005497 | 378 | BIO2 "BIOTIN AUXOTROPH 2" [Ara | 0.888 | 0.907 | 0.829 | 1.3e-155 | |
| ASPGD|ASPL0000006186 | 393 | bioB [Emericella nidulans (tax | 0.883 | 0.867 | 0.542 | 1e-98 | |
| POMBASE|SPCC1235.02 | 363 | bio2 "biotin synthase" [Schizo | 0.839 | 0.892 | 0.559 | 6.8e-95 | |
| SGD|S000003518 | 375 | BIO2 "Biotin synthase" [Saccha | 0.805 | 0.829 | 0.539 | 9.3e-91 | |
| UNIPROTKB|Q9KSZ4 | 350 | bioB "Biotin synthase" [Vibrio | 0.795 | 0.877 | 0.550 | 6.7e-88 | |
| TIGR_CMR|VC_1112 | 350 | VC_1112 "biotin synthase" [Vib | 0.795 | 0.877 | 0.550 | 6.7e-88 | |
| UNIPROTKB|P12996 | 346 | bioB "biotin synthase monomer" | 0.823 | 0.919 | 0.531 | 2.4e-85 | |
| TIGR_CMR|SPO_3338 | 318 | SPO_3338 "biotin synthase" [Ru | 0.803 | 0.974 | 0.519 | 9.4e-82 | |
| CGD|CAL0002565 | 374 | BIO2 [Candida albicans (taxid: | 0.805 | 0.831 | 0.493 | 1.2e-81 | |
| UNIPROTKB|Q5A974 | 374 | BIO2 "Putative uncharacterized | 0.805 | 0.831 | 0.493 | 1.2e-81 |
| TAIR|locus:2005497 BIO2 "BIOTIN AUXOTROPH 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1517 (539.1 bits), Expect = 1.3e-155, P = 1.3e-155
Identities = 287/346 (82%), Positives = 312/346 (90%)
Query: 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGC 99
EAERTIREGPR+DWS+D+IKS+YDSP+LDLLFHGAQVHRH HNFREVQQCTLLSIKTGGC
Sbjct: 35 EAERTIREGPRNDWSRDEIKSVYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGC 94
Query: 100 SEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 159
SEDCSYCPQSSRY TGVK Q+LM+KDAV+ AA+KAKEAGSTRFCMGAAWRDTIGRKTNF+
Sbjct: 95 SEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFS 154
Query: 160 QILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYD 219
QILEY+K+IR MGMEVCCTLGM+EK QA+ELKKAGLTAYNHNLDTSRE+Y +ITTRSYD
Sbjct: 155 QILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYD 214
Query: 220 ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTP 279
+RLETL HVR+AGINVCSGGIIGLGEAEEDR+G ESVPINALLAVKGTP
Sbjct: 215 DRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTP 274
Query: 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339
L+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSM EQALCFLAGANSIFTGEKLL
Sbjct: 275 LEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLL 334
Query: 340 TTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHS 385
TTPNNDFDADQLMFK LGL PK PSF E + SE+E+C++ S S
Sbjct: 335 TTPNNDFDADQLMFKTLGLIPKPPSFSEDD---SESENCEKVASAS 377
|
|
| ASPGD|ASPL0000006186 bioB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 186/343 (54%), Positives = 243/343 (70%)
Query: 42 ERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSE 101
E PR +W++D+++ IY++P+ L + A VHR H+ +Q CTL++IKTGGCSE
Sbjct: 39 EAVAATAPRTNWTRDEVQQIYETPLNQLTYAAAAVHRRFHDPSAIQMCTLMNIKTGGCSE 98
Query: 102 DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161
DCSYC QSSRY TG+K K+ D V++ A+ AK GSTRFCMGAAWRD GRKT+ +
Sbjct: 99 DCSYCAQSSRYSTGLKATKMSPVDDVLEKARIAKANGSTRFCMGAAWRDMRGRKTSLKNV 158
Query: 162 LEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDER 221
+ V +R+MGMEVC TLGM++ QA ELK AGLTAYNHNLDTSREFY IITTRSYDER
Sbjct: 159 KQMVSGVREMGMEVCVTLGMIDADQAKELKDAGLTAYNHNLDTSREFYPTIITTRSYDER 218
Query: 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQ 281
L+TL HVR+AGINVCSGGI+GLGEA+ DR+G ES P+NAL+ +KGTPL
Sbjct: 219 LKTLSHVRDAGINVCSGGILGLGEADSDRIGLIHTVSSLPSHPESFPVNALVPIKGTPLG 278
Query: 282 DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341
D+K + +++R +ATARIV+P +VRL+AGR+ + +Q CF+AGAN++FTGEK+LTT
Sbjct: 279 DRKMISFDKLLRTVATARIVLPATIVRLAAGRISLTEEQQVACFMAGANAVFTGEKMLTT 338
Query: 342 PNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSH 384
N +D D+ MF G P SF E E N + + ++V+H
Sbjct: 339 DCNGWDEDRAMFDRWGFYPMR-SF-EKETNAATPQQHVDSVAH 379
|
|
| POMBASE|SPCC1235.02 bio2 "biotin synthase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 183/327 (55%), Positives = 236/327 (72%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R++W++++I+ IYD+P++DL+F A +HR H+ ++VQQCTLLSIKTGGC+EDC YC QS
Sbjct: 20 RNNWTREEIQKIYDTPLIDLIFRAASIHRKFHDPKKVQQCTLLSIKTGGCTEDCKYCAQS 79
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY+TGVK KLM D V++ A+ AK GSTRFCMG+AWRD GR F ILE +K++R
Sbjct: 80 SRYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVR 139
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
M MEVC TLGML + QA ELK AGLTAYNHNLDTSRE+YSKII+TR+YDERL T+ ++R
Sbjct: 140 SMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLDTSREYYSKIISTRTYDERLNTIDNLR 199
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQD--QKPVE 287
+AG+ VCSGGI+GLGE + DRVG ESVP N L+ + GTP+ D ++ +
Sbjct: 200 KAGLKVCSGGILGLGEKKHDRVGLIHSLATMPTHPESVPFNLLVPIPGTPVGDAVKERLP 259
Query: 288 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFD 347
I +R IATARI MPK ++R +AGR S EQAL F+AGAN++FTGEK+LTTP +D
Sbjct: 260 IHPFLRSIATARICMPKTIIRFAAGRNTCSESEQALAFMAGANAVFTGEKMLTTPAVSWD 319
Query: 348 ADQLMFKVLGLTPKAPSFHEGEANVSE 374
+D +F GL SF G + E
Sbjct: 320 SDSQLFYNWGLEGMQ-SFEYGTSTEGE 345
|
|
| SGD|S000003518 BIO2 "Biotin synthase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 172/319 (53%), Positives = 233/319 (73%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQV-HRHAHNFREVQQCTLLSIKTGGCSEDCSYCP 107
P H W+K +K IY +P+L+L H AQ+ HR H+ +VQ CTL++IK+GGCSEDC YC
Sbjct: 49 PSHSWTKSQLKEIYHTPLLELT-HAAQLQHRKWHDPTKVQLCTLMNIKSGGCSEDCKYCA 107
Query: 108 QSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167
QSSR DTG+K +K++ D V++ A++AK GSTRFC+GAAWRD GRK+ +I E V
Sbjct: 108 QSSRNDTGLKAEKMVKVDEVIKEAEEAKRNGSTRFCLGAAWRDMKGRKSAMKRIQEMVTK 167
Query: 168 IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
+ DMG+E C TLGM+++ QA +LK AGLTAYNHN+DTSRE YSK+ITTR+YD+RL+T+K+
Sbjct: 168 VNDMGLETCVTLGMVDQDQAKQLKDAGLTAYNHNIDTSREHYSKVITTRTYDDRLQTIKN 227
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQ---- 283
V+E+GI C+GGI+GLGE+E+D +G ES+PIN L+A+KGTP+ ++
Sbjct: 228 VQESGIKACTGGILGLGESEDDHIGFIYTLSNMSPHPESLPINRLVAIKGTPMAEELADP 287
Query: 284 --KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341
K ++ E++R IATARIVMPKA++RL+AGR EQ +CF+AG NSIFTG+K+LTT
Sbjct: 288 KSKKLQFDEILRTIATARIVMPKAIIRLAAGRYTMKETEQFVCFMAGCNSIFTGKKMLTT 347
Query: 342 PNNDFDADQLMFKVLGLTP 360
N +D D+ M GL P
Sbjct: 348 MCNGWDEDKAMLAKWGLQP 366
|
|
| UNIPROTKB|Q9KSZ4 bioB "Biotin synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 170/309 (55%), Positives = 218/309 (70%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
RH+W+ ++K++ D P +DLLF QVHR H VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RHNWTVAEVKALLDKPFMDLLFEAQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+ Y T V ++LM + V+ AAQKAK +GSTRFCMGAAW++ ++ + + E ++ ++
Sbjct: 64 AHYRTDVDKERLMEVERVLDAAQKAKNSGSTRFCMGAAWKNP--KERDMPLLKEMIRGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+E C TLGML QA +L +AGL YNHNLDTS EFY IITTR+Y +RL+TL HVR
Sbjct: 122 DMGLETCMTLGMLTPDQAQQLAQAGLDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIW 289
+AG+ +CSGGIIG+GE+ DR G ESVPIN L+ VKGTPL+ VE +
Sbjct: 182 DAGMKICSGGIIGMGESTNDRAGLLVELANLPTHPESVPINMLVKVKGTPLEQVDDVEPF 241
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
+ +R+IA ARI+MPK+ VRLSAGR + + QALCF+AGANSIF G KLLTTPN D+D
Sbjct: 242 DFVRLIAVARIMMPKSAVRLSAGREKMNEQMQALCFMAGANSIFYGCKLLTTPNPAEDSD 301
Query: 350 QLMFKVLGL 358
L+FK LG+
Sbjct: 302 MLLFKKLGI 310
|
|
| TIGR_CMR|VC_1112 VC_1112 "biotin synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 170/309 (55%), Positives = 218/309 (70%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
RH+W+ ++K++ D P +DLLF QVHR H VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RHNWTVAEVKALLDKPFMDLLFEAQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
+ Y T V ++LM + V+ AAQKAK +GSTRFCMGAAW++ ++ + + E ++ ++
Sbjct: 64 AHYRTDVDKERLMEVERVLDAAQKAKNSGSTRFCMGAAWKNP--KERDMPLLKEMIRGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
DMG+E C TLGML QA +L +AGL YNHNLDTS EFY IITTR+Y +RL+TL HVR
Sbjct: 122 DMGLETCMTLGMLTPDQAQQLAQAGLDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIW 289
+AG+ +CSGGIIG+GE+ DR G ESVPIN L+ VKGTPL+ VE +
Sbjct: 182 DAGMKICSGGIIGMGESTNDRAGLLVELANLPTHPESVPINMLVKVKGTPLEQVDDVEPF 241
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
+ +R+IA ARI+MPK+ VRLSAGR + + QALCF+AGANSIF G KLLTTPN D+D
Sbjct: 242 DFVRLIAVARIMMPKSAVRLSAGREKMNEQMQALCFMAGANSIFYGCKLLTTPNPAEDSD 301
Query: 350 QLMFKVLGL 358
L+FK LG+
Sbjct: 302 MLLFKKLGI 310
|
|
| UNIPROTKB|P12996 bioB "biotin synthase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 170/320 (53%), Positives = 219/320 (68%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R W+ + +++ P+LDLLF QVHR + R+VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ R + + + V+ ++
Sbjct: 64 SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLE--QMVQGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ VR
Sbjct: 122 AMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIW 289
+AGI VCSGGI+GLGE +DR G ESVPIN L+ VKGTPL D V+ +
Sbjct: 182 DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAF 241
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
+ IR IA ARI+MP + VRLSAGR + + QA+CF+AGANSIF G KLLTTPN + D D
Sbjct: 242 DFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKD 301
Query: 350 QLMFKVLGLTPKAPSFHEGE 369
+F+ LGL P+ + G+
Sbjct: 302 LQLFRKLGLNPQQTAVLAGD 321
|
|
| TIGR_CMR|SPO_3338 SPO_3338 "biotin synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 162/312 (51%), Positives = 214/312 (68%)
Query: 47 EGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYC 106
E R DWS D+++++ P+LDL+ VHR H ++Q+ +LLSIKTGGC EDC+YC
Sbjct: 3 EAIRSDWSVDEVEALLRLPLLDLVGRANGVHRAHHAPDDIQKASLLSIKTGGCPEDCAYC 62
Query: 107 PQSSRY-DTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYV 165
PQS+ + + + +KLM D V+ A++A+ AG+ RFCMGAAWR + F+ +L V
Sbjct: 63 PQSAHHREVELTREKLMNPDHVVSLARRAQRAGAERFCMGAAWRQ-VRDGAEFDNVLAMV 121
Query: 166 KDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETL 225
+ +R +GME C TLGML HQA L +AGLTAYNHNLDTS EFY +II TR+Y +RL+TL
Sbjct: 122 RGVRALGMEACVTLGMLRPHQAQRLAEAGLTAYNHNLDTSPEFYGQIIGTRTYQDRLDTL 181
Query: 226 KHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKP 285
+ R+AGI +C GGIIG+GE+ DR ESVPINAL+ ++GTPL ++
Sbjct: 182 AYCRDAGIELCCGGIIGMGESLRDRAAMLQVLANFAPHPESVPINALIPIEGTPLAHRER 241
Query: 286 VEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNND 345
V I++++RM+ATARI+MP VRLSAGR FS EQALCFLAGANS+F G+ LLT PN
Sbjct: 242 VGIFDLVRMVATARIIMPLTRVRLSAGRSDFSAAEQALCFLAGANSVFYGDVLLTAPNAG 301
Query: 346 FDADQLMFKVLG 357
AD +F LG
Sbjct: 302 TGADAELFAALG 313
|
|
| CGD|CAL0002565 BIO2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 158/320 (49%), Positives = 222/320 (69%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ 108
PR DW+KD+I IY++P++DL+F+ HR EVQ CTL++IK GGC+E+CSYC Q
Sbjct: 50 PRSDWTKDEISKIYNAPLMDLIFNAQLKHREYQKPAEVQLCTLVNIKQGGCTENCSYCSQ 109
Query: 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168
SS++DTGV+ +KL DAVM A+ AK G TR C+G+AWRD GRK+ ++I + VK I
Sbjct: 110 SSKHDTGVQAEKL-DLDAVMDIARDAKARGGTRVCLGSAWRDMQGRKSALDKISKVVKQI 168
Query: 169 RD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
D + +E C TLGM+ + QA LK+ GLTAYNHN+DTSRE Y ++TTR+YDERLET+K+
Sbjct: 169 NDELKLETCVTLGMINEKQAEILKQNGLTAYNHNIDTSREHYPNVVTTRTYDERLETIKN 228
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQD----- 282
V++AGI C+GGI+GLGE +D V ES+PIN L+ ++GTP+ +
Sbjct: 229 VQKAGIKACTGGILGLGETAQDHVSFLYTLSNMSPHPESLPINRLVPIQGTPIVEVLKNA 288
Query: 283 --QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT 340
++ +E ++R IATAR++MP++++RL+AGR EQ LCF++G N+IFTG+++LT
Sbjct: 289 PKERQLEFDAILRTIATARLIMPESIIRLAAGRYTMKEHEQFLCFMSGVNAIFTGKRMLT 348
Query: 341 TPNNDFDADQLMFKVLGLTP 360
T N +D D M K GL P
Sbjct: 349 TMCNGWDEDIAMLKKWGLKP 368
|
|
| UNIPROTKB|Q5A974 BIO2 "Putative uncharacterized protein BIO2" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 158/320 (49%), Positives = 222/320 (69%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ 108
PR DW+KD+I IY++P++DL+F+ HR EVQ CTL++IK GGC+E+CSYC Q
Sbjct: 50 PRSDWTKDEISKIYNAPLMDLIFNAQLKHREYQKPAEVQLCTLVNIKQGGCTENCSYCSQ 109
Query: 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168
SS++DTGV+ +KL DAVM A+ AK G TR C+G+AWRD GRK+ ++I + VK I
Sbjct: 110 SSKHDTGVQAEKL-DLDAVMDIARDAKARGGTRVCLGSAWRDMQGRKSALDKISKVVKQI 168
Query: 169 RD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
D + +E C TLGM+ + QA LK+ GLTAYNHN+DTSRE Y ++TTR+YDERLET+K+
Sbjct: 169 NDELKLETCVTLGMINEKQAEILKQNGLTAYNHNIDTSREHYPNVVTTRTYDERLETIKN 228
Query: 228 VREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQD----- 282
V++AGI C+GGI+GLGE +D V ES+PIN L+ ++GTP+ +
Sbjct: 229 VQKAGIKACTGGILGLGETAQDHVSFLYTLSNMSPHPESLPINRLVPIQGTPIVEVLKNA 288
Query: 283 --QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT 340
++ +E ++R IATAR++MP++++RL+AGR EQ LCF++G N+IFTG+++LT
Sbjct: 289 PKERQLEFDAILRTIATARLIMPESIIRLAAGRYTMKEHEQFLCFMSGVNAIFTGKRMLT 348
Query: 341 TPNNDFDADQLMFKVLGLTP 360
T N +D D M K GL P
Sbjct: 349 TMCNGWDEDIAMLKKWGLKP 368
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A5F2H3 | BIOB_VIBC3 | 2, ., 8, ., 1, ., 6 | 0.5774 | 0.7979 | 0.88 | yes | no |
| A3M4U4 | BIOB_ACIBT | 2, ., 8, ., 1, ., 6 | 0.5509 | 0.8082 | 0.9483 | yes | no |
| Q7MLV0 | BIOB_VIBVY | 2, ., 8, ., 1, ., 6 | 0.5446 | 0.8367 | 0.9228 | yes | no |
| B1LM66 | BIOB_ECOSM | 2, ., 8, ., 1, ., 6 | 0.5562 | 0.8238 | 0.9190 | yes | no |
| B7H3S4 | BIOB_ACIB3 | 2, ., 8, ., 1, ., 6 | 0.5509 | 0.8082 | 0.9483 | yes | no |
| Q87QN6 | BIOB_VIBPA | 2, ., 8, ., 1, ., 6 | 0.5580 | 0.7979 | 0.88 | yes | no |
| A1JS69 | BIOB_YERE8 | 2, ., 8, ., 1, ., 6 | 0.5615 | 0.8160 | 0.9 | yes | no |
| P32451 | BIOB_YEAST | 2, ., 8, ., 1, ., 6 | 0.5249 | 0.8601 | 0.8853 | yes | no |
| B2K8T0 | BIOB_YERPB | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| Q93GG2 | BIOB_ACICA | 2, ., 8, ., 1, ., 6 | 0.5580 | 0.7979 | 0.9361 | yes | no |
| Q11S94 | BIOB_CYTH3 | 2, ., 8, ., 1, ., 6 | 0.6510 | 0.8264 | 0.9465 | yes | no |
| B1JSS4 | BIOB_YERPY | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| B0VR41 | BIOB_ACIBS | 2, ., 8, ., 1, ., 6 | 0.5477 | 0.8082 | 0.9483 | yes | no |
| B2J914 | BIOB_NOSP7 | 2, ., 8, ., 1, ., 6 | 0.5794 | 0.8186 | 0.9432 | yes | no |
| B2TVF5 | BIOB_SHIB3 | 2, ., 8, ., 1, ., 6 | 0.5562 | 0.8238 | 0.9190 | yes | no |
| Q2NB65 | BIOB_ERYLH | 2, ., 8, ., 1, ., 6 | 0.5696 | 0.7979 | 0.9032 | yes | no |
| Q0TJS3 | BIOB_ECOL5 | 2, ., 8, ., 1, ., 6 | 0.5593 | 0.8238 | 0.9190 | yes | no |
| Q3M4U9 | BIOB_ANAVT | 2, ., 8, ., 1, ., 6 | 0.5862 | 0.8134 | 0.9373 | yes | no |
| A9R3C8 | BIOB_YERPG | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| A1A917 | BIOB_ECOK1 | 2, ., 8, ., 1, ., 6 | 0.5593 | 0.8238 | 0.9190 | yes | no |
| Q8PDF0 | BIOB_XANCP | 2, ., 8, ., 1, ., 6 | 0.5294 | 0.8652 | 0.9709 | yes | no |
| Q66D67 | BIOB_YERPS | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| B7I4I4 | BIOB_ACIB5 | 2, ., 8, ., 1, ., 6 | 0.5509 | 0.8082 | 0.9483 | yes | no |
| Q1CFQ3 | BIOB_YERPN | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| Q1REF5 | BIOB_ECOUT | 2, ., 8, ., 1, ., 6 | 0.5593 | 0.8238 | 0.9190 | yes | no |
| A6GW77 | BIOB_FLAPJ | 2, ., 8, ., 1, ., 6 | 0.5605 | 0.8108 | 0.8646 | yes | no |
| Q8X825 | BIOB_ECO57 | 2, ., 8, ., 1, ., 6 | 0.5562 | 0.8238 | 0.9190 | N/A | no |
| B2UDA1 | BIOB_RALPJ | 2, ., 8, ., 1, ., 6 | 0.5482 | 0.8264 | 0.8885 | yes | no |
| B2HYX9 | BIOB_ACIBC | 2, ., 8, ., 1, ., 6 | 0.5509 | 0.8082 | 0.9483 | yes | no |
| Q3Z409 | BIOB_SHISS | 2, ., 8, ., 1, ., 6 | 0.5562 | 0.8238 | 0.9190 | yes | no |
| B5YRL4 | BIOB_ECO5E | 2, ., 8, ., 1, ., 6 | 0.5562 | 0.8238 | 0.9190 | yes | no |
| Q324B7 | BIOB_SHIBS | 2, ., 8, ., 1, ., 6 | 0.5562 | 0.8238 | 0.9190 | yes | no |
| A0M7A9 | BIOB_GRAFK | 2, ., 8, ., 1, ., 6 | 0.5673 | 0.8056 | 0.8567 | yes | no |
| A4TNQ6 | BIOB_YERPP | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| B0RMR2 | BIOB_XANCB | 2, ., 8, ., 1, ., 6 | 0.5294 | 0.8652 | 0.9709 | yes | no |
| Q6FAP9 | BIOB_ACIAD | 2, ., 8, ., 1, ., 6 | 0.5477 | 0.8082 | 0.9483 | yes | no |
| Q8D8M9 | BIOB_VIBVU | 2, ., 8, ., 1, ., 6 | 0.5446 | 0.8367 | 0.9228 | yes | no |
| Q9KSZ4 | BIOB_VIBCH | 2, ., 8, ., 1, ., 6 | 0.5774 | 0.7979 | 0.88 | yes | no |
| B0VCA8 | BIOB_ACIBY | 2, ., 8, ., 1, ., 6 | 0.5509 | 0.8082 | 0.9483 | yes | no |
| A5FLT1 | BIOB_FLAJ1 | 2, ., 8, ., 1, ., 6 | 0.5602 | 0.8575 | 0.9118 | yes | no |
| O59778 | BIOB_SCHPO | 2, ., 8, ., 1, ., 6 | 0.6045 | 0.8005 | 0.8512 | yes | no |
| Q8FJQ3 | BIOB_ECOL6 | 2, ., 8, ., 1, ., 6 | 0.5593 | 0.8238 | 0.9190 | yes | no |
| Q1C947 | BIOB_YERPA | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| Q8YVQ3 | BIOB_NOSS1 | 2, ., 8, ., 1, ., 6 | 0.5862 | 0.8134 | 0.9373 | yes | no |
| B7MGN3 | BIOB_ECO45 | 2, ., 8, ., 1, ., 6 | 0.5593 | 0.8238 | 0.9190 | yes | no |
| Q7CH65 | BIOB_YERPE | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| A7FKM9 | BIOB_YERP3 | 2, ., 8, ., 1, ., 6 | 0.5569 | 0.8367 | 0.9362 | yes | no |
| B7MQM8 | BIOB_ECO81 | 2, ., 8, ., 1, ., 6 | 0.5593 | 0.8238 | 0.9190 | yes | no |
| P54967 | BIOB_ARATH | 2, ., 8, ., 1, ., 6 | 0.8181 | 0.9766 | 0.9973 | yes | no |
| Q4UZN8 | BIOB_XANC8 | 2, ., 8, ., 1, ., 6 | 0.5294 | 0.8652 | 0.9709 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.6 | 0.994 |
| 3rd Layer | 2.8.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 386 | |||
| PLN02389 | 379 | PLN02389, PLN02389, biotin synthase | 0.0 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 1e-149 | |
| TIGR00433 | 296 | TIGR00433, bioB, biotin synthase | 1e-149 | |
| PRK15108 | 345 | PRK15108, PRK15108, biotin synthase; Provisional | 1e-142 | |
| PRK06256 | 336 | PRK06256, PRK06256, biotin synthase; Validated | 1e-90 | |
| PRK08508 | 279 | PRK08508, PRK08508, biotin synthase; Provisional | 2e-62 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 3e-37 | |
| smart00876 | 94 | smart00876, BATS, Biotin and Thiamin Synthesis ass | 1e-34 | |
| pfam06968 | 93 | pfam06968, BATS, Biotin and Thiamin Synthesis asso | 1e-34 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 6e-21 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 4e-15 | |
| TIGR03910 | 347 | TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis | 6e-13 | |
| TIGR03957 | 317 | TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydrometha | 4e-12 | |
| TIGR03550 | 322 | TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-d | 3e-11 | |
| PRK07094 | 323 | PRK07094, PRK07094, biotin synthase; Provisional | 9e-11 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 6e-10 | |
| PRK06245 | 336 | PRK06245, cofG, FO synthase subunit 1; Reviewed | 6e-08 | |
| COG1242 | 312 | COG1242, COG1242, Predicted Fe-S oxidoreductase [G | 7e-06 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 3e-05 | |
| TIGR02668 | 302 | TIGR02668, moaA_archaeal, probable molybdenum cofa | 8e-05 | |
| TIGR03551 | 343 | TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-d | 0.001 | |
| TIGR01212 | 302 | TIGR01212, TIGR01212, radical SAM protein, TIGR012 | 0.002 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 0.002 | |
| PRK09234 | 843 | PRK09234, fbiC, FO synthase; Reviewed | 0.003 | |
| COG2516 | 339 | COG2516, COG2516, Biotin synthase-related enzyme [ | 0.004 |
| >gnl|CDD|215219 PLN02389, PLN02389, biotin synthase | Back alignment and domain information |
|---|
Score = 719 bits (1857), Expect = 0.0
Identities = 313/385 (81%), Positives = 342/385 (88%), Gaps = 6/385 (1%)
Query: 1 MMSFRSLLRSQRSLSLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKS 60
M RS+ RSQ LRP + SS S S+SAAAI AER IREGPR+DW++D+IK
Sbjct: 1 MALLRSVFRSQ----LRPP--PSSSLSSESSSSSSAAAIAAERAIREGPRNDWTRDEIKE 54
Query: 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQK 120
+YDSP+LDLLFHGAQVHRHAH+ REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVK QK
Sbjct: 55 VYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQK 114
Query: 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG 180
LM+KD V++AA++AKEAGSTRFCMGAAWRDT+GRKTNFNQILEYVK+IR MGMEVCCTLG
Sbjct: 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLG 174
Query: 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240
MLEK QA +LK+AGLTAYNHNLDTSRE+Y +ITTRSYD+RLETL+ VREAGI+VCSGGI
Sbjct: 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGI 234
Query: 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300
IGLGEAEEDRVGLLHTLATLP HPESVPINAL+AVKGTPL+DQKPVEIWEM+RMIATARI
Sbjct: 235 IGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARI 294
Query: 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
VMPKAMVRLSAGRVRFSM EQALCFLAGANSIFTG+KLLTTPNNDFDADQ MFK LGL P
Sbjct: 295 VMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIP 354
Query: 361 KAPSFHEGEANVSEAESCQEAVSHS 385
K PSF E E SEAE C+EAVS S
Sbjct: 355 KPPSFGEDEERASEAERCEEAVSSS 379
|
Length = 379 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 425 bits (1096), Expect = e-149
Identities = 173/331 (52%), Positives = 225/331 (67%), Gaps = 6/331 (1%)
Query: 43 RTIREGPRHDWSKDDIKSIYDSPVLD-LLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSE 101
R W+ D+ ++ D P D LLF AQ HR + EVQ TL+SIKTG C E
Sbjct: 4 REKVLRRGERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPE 63
Query: 102 DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161
DC+YC QS+RY TGVK +KLM + +++AA+KAK AG+TRFCMGAA R GR ++
Sbjct: 64 DCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRGP-GRD--MEEV 120
Query: 162 LEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDE 220
+E +K +++ +G+EVC +LGML + QA +L AG+ YNHNL+TS EFY IITTR+Y++
Sbjct: 121 VEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYED 180
Query: 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280
RL TL++VREAGI VCSGGI+GLGE EDR LL LA LPT P+SVPIN L + GTPL
Sbjct: 181 RLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPL 239
Query: 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT 340
++ KP++ +E ++ IA ARI+MPK+M+RLSAGR QAL F+AGANSIF G+K LT
Sbjct: 240 ENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLT 299
Query: 341 TPNNDFDADQLMFKVLGLTPKAPSFHEGEAN 371
TP D D D + K LGL P+ +
Sbjct: 300 TPGPDEDKDLELLKDLGLEPELLNREAATEG 330
|
Length = 335 |
| >gnl|CDD|232973 TIGR00433, bioB, biotin synthase | Back alignment and domain information |
|---|
Score = 422 bits (1088), Expect = e-149
Identities = 142/302 (47%), Positives = 199/302 (65%), Gaps = 7/302 (2%)
Query: 59 KSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKG 118
+ D P+LDLL ++ RH +V C++++ K+GGC EDC YC QS+ Y TG++
Sbjct: 1 LELPDEPLLDLLAAAQRIRRH-FFGNKVDLCSIINAKSGGCPEDCKYCAQSAHYKTGIEK 59
Query: 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCC 177
L++ + V++AA+KAK AG++RFCM + R R F ++LE +++I++ G+EVC
Sbjct: 60 YPLLSVEEVLEAAKKAKAAGASRFCMVTSGRGPSDR--EFEKVLEAIREIKEETGLEVCA 117
Query: 178 TLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCS 237
+LG+L + QA LK AG+ YNHNL+TS +Y I TT +YD+RLETLK R+AG++VCS
Sbjct: 118 SLGLLSEEQAQRLKDAGVDRYNHNLETSPSYYPNICTTHTYDDRLETLKRARKAGLSVCS 177
Query: 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIAT 297
GGIIG+GE EDR+ L LA L +SVPIN L+ + GTPL+D P++ E +R IA
Sbjct: 178 GGIIGMGETMEDRIELAFALAELD--VDSVPINFLVPIPGTPLEDAPPLDPEECLRTIAL 235
Query: 298 ARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 357
R +MP A +RL+ GR QALCFLAGANSIFTG+ LTT + + D M + LG
Sbjct: 236 FRFIMPDAEIRLAGGRELMLRELQALCFLAGANSIFTGD-YLTTAGREAEEDLEMLEDLG 294
Query: 358 LT 359
L
Sbjct: 295 LE 296
|
Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 296 |
| >gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 408 bits (1050), Expect = e-142
Identities = 177/320 (55%), Positives = 227/320 (70%), Gaps = 2/320 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R W+ + +++ P+L+LLF QVHR + R+VQ TLLSIKTG C EDC YCPQS
Sbjct: 4 RPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQS 63
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ R + + + V+ ++
Sbjct: 64 SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLE--QMVQGVK 121
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ VR
Sbjct: 122 AMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR 181
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
+AGI VCSGGI+GLGE +DR GLL LA LPT PESVPIN L+ VKGTPL D V+ +
Sbjct: 182 DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAF 241
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
+ IR IA ARI+MP + VRLSAGR + + QA+CF+AGANSIF G KLLTTPN + D D
Sbjct: 242 DFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKD 301
Query: 350 QLMFKVLGLTPKAPSFHEGE 369
+F+ LGL P+ + G+
Sbjct: 302 LQLFRKLGLNPQQTAVLAGD 321
|
Length = 345 |
| >gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated | Back alignment and domain information |
|---|
Score = 275 bits (707), Expect = 1e-90
Identities = 113/319 (35%), Positives = 182/319 (57%), Gaps = 13/319 (4%)
Query: 54 SKDDIKSIYDSPVLDL--LFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSR 111
+K++ ++ + P DL L A R ++V+ T+++ K+G C EDC YC QS+
Sbjct: 21 TKEEALALLEIPDDDLLELLAAAYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAG 80
Query: 112 YDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-D 170
V + + +++AA++A E G+ FC+ A+ R G++ +Q++E VK I+ +
Sbjct: 81 SSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE--VDQVVEAVKAIKEE 138
Query: 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVRE 230
+E+C LG+L + QA LK+AG+ YNHNL+TSR ++ ++TT +Y++R++T + V+
Sbjct: 139 TDLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKA 198
Query: 231 AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE 290
AGI CSGGIIG+GE+ EDRV L L +S+PIN L + GTPL++ + E
Sbjct: 199 AGIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLE 256
Query: 291 MIRMIATARIVMPKAMVRLSAGR-VRF-SMPEQALCFLAGANSIFTGEKLLTTPNNDFDA 348
++ IA R++ P +R++ GR V S+ Q L L GANS+ G LTT A
Sbjct: 257 CLKTIAIFRLINPDKEIRIAGGREVNLRSL--QPL-GLGGANSVIVGN-YLTTVGQPATA 312
Query: 349 DQLMFKVLGLTPKAPSFHE 367
D M + LG + +
Sbjct: 313 DLDMIEDLGFEIELDALKA 331
|
Length = 336 |
| >gnl|CDD|236279 PRK08508, PRK08508, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-62
Identities = 101/279 (36%), Positives = 149/279 (53%), Gaps = 20/279 (7%)
Query: 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAW 148
C + +I +G C EDC YC QS+ Y +K K + ++Q A+ AK G+ FC+
Sbjct: 7 CAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLV--- 63
Query: 149 RDTIGRKTNFNQILEYV--------KDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200
T GR + ++ LEYV K++ + + C G Q ELKKAG+ +YNH
Sbjct: 64 --TSGRGLD-DKKLEYVAEAAKAVKKEVPGLHLIACN--GTASVEQLKELKKAGIFSYNH 118
Query: 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260
NL+TS+EF+ KI TT +++ER +T ++ +EAG+ +CSGGI GLGE+ EDR+ L +LA+L
Sbjct: 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASL 178
Query: 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPE 320
P S PIN + PL + E + ++ A+ +P A + ++ GR
Sbjct: 179 --SPHSTPINFFIPNPALPL-KAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGER 235
Query: 321 QALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLT 359
Q F AGAN+I G+ LTT D K LG
Sbjct: 236 QYEIFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFE 273
|
Length = 279 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-37
Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 23/223 (10%)
Query: 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFC 143
L I T GC C++C S +A+++ + E G
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSLRGKLRS----RYLEALVREIELLAEKGEKEGLVGTVF 56
Query: 144 MGAAWRDTIGRKTNFNQILEYVKDI----RDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199
+G + + ++LE +++I +D+ + + L + LK+AG+ +
Sbjct: 57 IGGGTPTLLSPEQ-LEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVS 115
Query: 200 HNLDT-SREFYSKIITTRSYDERLETLKHVREAG-INVCSGGIIGL-GEAEEDRVGLLHT 256
+ + E I + ++ LE ++ +REAG I V + I+GL GE EED L
Sbjct: 116 LGVQSGDDEVLKAINRGHTVEDVLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETLKL 175
Query: 257 LATLPTHPESVPINALLAVKGTPLQDQ----KPVEIWEMIRMI 295
L L P+ V I L GTPL KP E ++
Sbjct: 176 LKEL--GPDRVSIFPLSPRPGTPLAKMYKRLKPPTKEERAELL 216
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|214877 smart00876, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 1e-34
Identities = 47/94 (50%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 268 PINALLAVKGTPLQDQ-KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL 326
PIN L ++GTPL+D PV E +R IA AR+ +P A +RLS GR QALCF
Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60
Query: 327 AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
AGANSIF G+K LTT D M + LGL P
Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLEP 94
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers.. This domain therefore may be involved in co-factor binding or dimerisation. Length = 94 |
| >gnl|CDD|219245 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 1e-34
Identities = 42/93 (45%), Positives = 55/93 (59%)
Query: 268 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA 327
PIN L ++GTPL+DQ P+ E ++ IA R+++P A +RLS GR Q L F++
Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60
Query: 328 GANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360
GANS F G L T+ N D D M K LGL P
Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLEP 93
|
Biotin synthase (BioB), EC:2.8.1.6, catalyzes the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerisation (Finn, RD personal observation). Length = 93 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 6e-21
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 94 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 153
I T GC+ C+YC + ++ + +++ A++ G + + +
Sbjct: 2 IVTRGCNLRCTYCAF--PSIRARGKGRELSPEEILEEAKELARLGVEVVILTGG--EPLL 57
Query: 154 RKTNFNQILEYVKDIRDMGMEVCCT--LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSK 211
+ +K G+ + +L++ ELK+AGL + +L + + K
Sbjct: 58 LPDLVELLERLLKLREGEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 212 II-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTL 257
II +++E LE L+ +REAGI V I+GL GE +ED L L
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETLELL 165
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 4e-15
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 15/208 (7%)
Query: 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK 155
T GC+ +C +C + G + + + +AKE G +
Sbjct: 4 TRGCNLNCGFCSNPASKGRGPESPPEIEEIL--DIVLEAKERGVEVVILTGGEPLLYPEL 61
Query: 156 TNFNQILEYVKDIRDMGMEVC-CTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKII 213
+L +K G E+ T G L + ELK+ GL +LD+ E + I
Sbjct: 62 AE---LLRRLKK-ELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKI 117
Query: 214 --TTRSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPI 269
+ S+ ERLE LK +REAG+ + + ++GLG + E+D L P+ V +
Sbjct: 118 RGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRS--PDRVSL 175
Query: 270 NALLAVKGTPLQDQ-KPVEIWEMIRMIA 296
LL +GTPL+ V +++R+IA
Sbjct: 176 FRLLPEEGTPLELAAPVVPAEKLLRLIA 203
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|188425 TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis radical SAM protein | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 52/219 (23%), Positives = 104/219 (47%), Gaps = 15/219 (6%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAA---WRDTIG 153
C +C++C + + ++ + T++ + AA+ ++G MG D G
Sbjct: 66 CKNNCAFC-YYRKSNHAIRRYRK-TREEIKAAARALADSGVHLIDLTMGEDPYYHNDPRG 123
Query: 154 RKTNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT-SREFYSK 211
F ++ E V+ + + G+ V + G+++ +LK+AG Y +T RE Y+K
Sbjct: 124 ----FERLAELVRMVKEETGLPVMISPGVVDNETLKKLKEAGANWYACYQETHDRELYNK 179
Query: 212 IITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271
+ +S+DER+ + +H + G + G + G+G+ ED L + +L + V +
Sbjct: 180 LRVGQSFDERMNSKRHAKRIGYLIEEGILTGVGDDIEDTAISLRGMKSL--DADQVRVMT 237
Query: 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 310
+ KGTPL+ + +R+IA R++ P ++ S
Sbjct: 238 FVPQKGTPLEGKDVEGNLAELRIIAIMRLLFPDRLIPAS 276
|
This model describes a radical SAM protein, PylB, that is part of the three-gene cassette sufficient for the biosynthesis of pyrrolysine (the twenty-second amino acid) when expressed heterologously in E. coli. The pyrrolysine next is ligated to its own tRNA and incorporated at special UAG codons [Amino acid biosynthesis, Other]. Length = 347 |
| >gnl|CDD|188472 TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 4e-12
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 189 ELKKAGLTAYNHNLDT-SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE 247
EL + G NL+T + E + K+ ++R+ + V + GI + SG +IG+GE+
Sbjct: 137 ELARYGTDTICCNLETTNEELFKKLKPGEELEDRIRVCEMVCKYGIELSSGLLIGIGESY 196
Query: 248 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV 307
EDR+ L L E +PI GTP+++ P + E + IA R++ P +
Sbjct: 197 EDRLEHLKFLKRFENLGE-IPIMGFNPYPGTPMENHPPCSLLEQAKTIAVTRLMYPDIRI 255
Query: 308 -----RLSAGRVRFSMPEQALCFLAGANSIFT 334
+ V+F++ +AGA+++ T
Sbjct: 256 TVPTPTIGPENVQFAL-------MAGADNVAT 280
|
Members of this archaeal protein family are HmdB, a partially characterized radical SAM protein with an unusual CX5CX2C motif. Its gene flanks the H2-forming methylene-H4-methanopterin dehydrogenase gene hmdA, found in hydrogenotrophic methanogens. HmdB appears to act in in biosynthesis of the novel cofactor of HmdA [Protein fate, Protein modification and repair, Energy metabolism, Methanogenesis]. Length = 317 |
| >gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 34/234 (14%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR--FCMG-------AAWR 149
C C YC + R G L++ + V++ +K AG T F G R
Sbjct: 14 CRNRCGYC--TFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAR 71
Query: 150 DTIGRKTNFNQILEYVKDIRDMGMEVCCTL-----GMLEKHQAIELKKA----GLTAYNH 200
+ + ++ LEY++++ ++ +E L G++ + + LK GL
Sbjct: 72 EWLAEM-GYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLM---- 126
Query: 201 NLDTSREFYSKIITTR-SYD----ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255
L+T+ E K S RLET++ I +G +IG+GE E+R L
Sbjct: 127 -LETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLL 185
Query: 256 TLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 306
+ L H + V + A GTP+++ + EM+R +A AR+++P +
Sbjct: 186 AIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDI 239
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 322 |
| >gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 51/257 (19%)
Query: 99 CSEDCSYC------PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM-----GAA 147
C +C YC RY ++ + +++ A+KA E G +
Sbjct: 49 CRNNCLYCGLRRDNKNIERY--------RLSPEEILECAKKAYELGYRTIVLQSGEDPYY 100
Query: 148 WRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK-HQAIEL-KKAGLTAYNHNLDTS 205
+ I + +K+I+ ++V TL + E+ ++ + K+AG Y +T+
Sbjct: 101 TDEKIA---------DIIKEIKK-ELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETA 150
Query: 206 -REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTH 263
+E Y+K+ S++ R+ LK ++E G V SG ++GL G+ ED + L L
Sbjct: 151 DKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD-- 208
Query: 264 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-------AMVRLSA-GRVR 315
+ + I + TPL+D+K + ++++A R+++P A+ L+ GR
Sbjct: 209 LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGR-- 266
Query: 316 FSMPEQALCFLAGANSI 332
E+ L AGAN +
Sbjct: 267 ----EKGL--KAGANVV 277
|
Length = 323 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 34/258 (13%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 158
C DC++C + G ++ + +++ ++A + G T + + +
Sbjct: 69 CVNDCTFC--AFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGG----EHPELSL 122
Query: 159 NQILEYVKDIRDMGMEVCC---TLGMLEKHQAI----------ELKKAGL-----TAYNH 200
E + I++ ++ + G + LK+AGL
Sbjct: 123 EYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEI 182
Query: 201 NLDTSREFYS--KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLA 258
+ R+ + K S +E LE + GI + ++G E EDR+ L +
Sbjct: 183 LSEEVRKIHCPPKK----SPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIR 238
Query: 259 TLPT---HPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV 314
L + G P + + + ++ IA ARI + + + A +
Sbjct: 239 DLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWL 298
Query: 315 RFSMPEQALCFLAGANSI 332
R + L+GAN +
Sbjct: 299 RDGVILAQAALLSGANDL 316
|
Length = 370 |
| >gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 62/244 (25%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR--FCMG----------A 146
C C YC + R D G L++ + V + ++ +AG T F G
Sbjct: 22 CRNRCGYC--TFRRDPG--QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIK 77
Query: 147 AWRDTIGRKTNFNQILEYVKDI----RDMGM------------------EVCCTLG-MLE 183
+G + ILEY+ D+ + G+ EV ++G MLE
Sbjct: 78 EQLAEMGYSS----ILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNASMGLMLE 133
Query: 184 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 243
Q L H R K + RLET+++ + I +G +IG+
Sbjct: 134 --QTSPR----LLNTVH-----RGSPGKDP-----ELRLETIENAGKLKIPFTTGILIGI 177
Query: 244 GEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300
GE EDR L +A L H + V I G P+++ + EM+R++A AR+
Sbjct: 178 GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARL 237
Query: 301 VMPK 304
++P
Sbjct: 238 ILPP 241
|
Length = 336 |
| >gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 188 IELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEA 246
+EL GL + T + +I + ++ +K +R+ GI VC+ I GL GE
Sbjct: 146 VEL---GLQTAHD--KTLK----RINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGET 196
Query: 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARI 300
++ + +A L + + ++ L VKGTP++ K + + E + ++
Sbjct: 197 RDEMLETAKIVAELGV--DGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLE 254
Query: 301 VMPKAMV--RLSA 311
+P +V R++
Sbjct: 255 HLPPEVVIHRITG 267
|
Length = 312 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 189 ELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA 246
+ AG +NHN++T Y ++ +Y+ L L+ +E G ++ SG ++GLGE
Sbjct: 167 IVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGET 226
Query: 247 EEDRVGLLHTL 257
+E+ + ++ L
Sbjct: 227 DEEVIEVMDDL 237
|
Length = 306 |
| >gnl|CDD|233968 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK 155
T C+ C YC G ++ + + + + A E G + + T G
Sbjct: 17 TDRCNLSCFYC---HMEGEDRSGGNELSPEEIERIVRVASEFGVRKV------KITGGEP 67
Query: 156 T---NFNQILEYVKD--IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT-SREFY 209
+ +I+ +KD I+D+ M T G+L + A +LK+AGL N +LDT E Y
Sbjct: 68 LLRKDLIEIIRRIKDYGIKDVSM---TTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKY 124
Query: 210 SKIITTRSYDERLETLKHVREAGI 233
KI + D +E ++ +AG+
Sbjct: 125 KKITGRGALDRVIEGIESAVDAGL 148
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 302 |
| >gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 68/267 (25%), Positives = 103/267 (38%), Gaps = 50/267 (18%)
Query: 99 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTN 157
C C +C + R G L++ + + + A +A +AG+T C+ G D G
Sbjct: 49 CYGGCGFC--AFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG--DF 104
Query: 158 FNQILEYVKD-IRDMG------MEV---CCTLGMLEKHQAIELKKAGL-----TAYNHNL 202
+ IL VK+ + M MEV G+ + LK+AGL TA
Sbjct: 105 YLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILD 164
Query: 203 DTSREFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260
D R K+I S E +E +K + GI + + G E E V L L +
Sbjct: 165 DEVR----KVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREI 220
Query: 261 --PTH--PESVPI-----NALLAVKG------TPLQDQKPVEIWEMIRMIATARIVMPKA 305
T E VP+ NA L +KG T +D K + A ARI++
Sbjct: 221 QEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLK---------VHAIARILLHGL 271
Query: 306 MVRLSAGRVRFSMPEQALCFLAGANSI 332
+ + A V+ + GAN +
Sbjct: 272 IDNIQASWVKLGKKLAQVALRCGANDL 298
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 343 |
| >gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 223 ETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281
+ +K R+ GI VCS I+GL GE E+ + ++ L + + I+ L VKGT +
Sbjct: 167 DAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDV--DGIKIHPLHVVKGTKMA 224
Query: 282 DQ 283
Sbjct: 225 KM 226
|
This family has a cluster of conserved Cys residues suggestive of Fe-S cluster binding. Members belong to the radical-SAM family of putative This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain [Unknown function, Enzymes of unknown specificity]. Length = 302 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 184 KHQAIE-LKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGI 240
+ + + + A +NHNL+T + Y L+ L +E ++ SG +
Sbjct: 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLM 211
Query: 241 IGLGEAEEDRVGLLHTL 257
+GLGE E++ + L L
Sbjct: 212 LGLGETEDEVIETLRDL 228
|
Length = 290 |
| >gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKG 277
RL L+ + +G +IG+GE +R L + L H + V + A
Sbjct: 220 RLRVLEDAGRLSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPD 279
Query: 278 TPLQDQKPVEIWEMIRMIATARIVMPKAM 306
T + + E++ IA AR+V+ M
Sbjct: 280 TAMAGVPDAGLEELLATIAVARLVLGPKM 308
|
Length = 843 |
| >gnl|CDD|225314 COG2516, COG2516, Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 150
L++ GGC DC+YCPQ +R T +K++++ A + + +G R
Sbjct: 33 LMTTYPGGCIADCAYCPQ-ARSSTANPPKKVLSR-VEWPAVALEEVLKRLFYDLGNFKRI 90
Query: 151 TIGRKTNFNQILEYVKDIRDMGMEV---CCTLGML-----------EKHQAIELKKAGLT 196
I Q + Y + + D+ + + LG K + E +K G
Sbjct: 91 CI-------QQIAYPRALNDLKLILERLHIRLGDPITISECITAVSLKEELEEYRKLGAD 143
Query: 197 AYNHNLDTSRE-FYSKIITT----RSYDERLETLKHVREA--GINVCSGGIIGLGEAEED 249
D + E + K+ T S++ E L+ V EA V I+GLGE+++D
Sbjct: 144 YLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHLIVGLGESDKD 203
Query: 250 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 309
V + + V + A +KGT ++++KP + E R I AR ++ V L
Sbjct: 204 IVETIKRVRKRGG---IVSLFAFTPLKGTQMENRKPPPV-ERYRKIQVARYLIGNGEVDL 259
Query: 310 SAG 312
Sbjct: 260 EDF 262
|
Length = 339 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 100.0 | |
| PLN02389 | 379 | biotin synthase | 100.0 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 100.0 | |
| PRK15108 | 345 | biotin synthase; Provisional | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 100.0 | |
| PRK06256 | 336 | biotin synthase; Validated | 100.0 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 100.0 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 100.0 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 100.0 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 100.0 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 100.0 | |
| PRK08508 | 279 | biotin synthase; Provisional | 100.0 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 100.0 | |
| PRK07094 | 323 | biotin synthase; Provisional | 100.0 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 100.0 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 100.0 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 100.0 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 100.0 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 99.93 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 99.93 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.92 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 99.92 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 99.91 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.91 | |
| PLN02428 | 349 | lipoic acid synthase | 99.91 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.9 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.9 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.9 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.89 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.89 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.88 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.88 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.88 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.88 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.88 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.88 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.87 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.87 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.87 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.87 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.87 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.86 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.86 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.86 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.86 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.86 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.85 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.85 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.85 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.85 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.85 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.85 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.85 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.85 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.85 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.85 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.84 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.84 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.84 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.82 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.82 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.81 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.81 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.81 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.8 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.8 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.8 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 99.79 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.76 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.75 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.75 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.75 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.73 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.73 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.72 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 99.69 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 99.68 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.66 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.65 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.64 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.63 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.63 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 99.62 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.6 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 99.59 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 99.57 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.57 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 99.57 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.56 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 99.56 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 99.55 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.55 | |
| smart00876 | 94 | BATS Biotin and Thiamin Synthesis associated domai | 99.54 | |
| PF06968 | 93 | BATS: Biotin and Thiamin Synthesis associated doma | 99.54 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.52 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 99.51 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.5 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 99.49 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.48 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 99.47 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 99.47 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.47 | |
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 99.46 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 99.46 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.45 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.44 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 99.43 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.43 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 99.42 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.4 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 99.38 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 99.37 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 99.36 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.36 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 99.35 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 99.33 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 99.27 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 99.25 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 99.25 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 99.23 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 99.22 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 99.2 | |
| KOG4355 | 547 | consensus Predicted Fe-S oxidoreductase [General f | 99.19 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 99.08 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 98.95 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.93 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 98.88 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 98.79 | |
| KOG2492 | 552 | consensus CDK5 activator-binding protein [Signal t | 98.77 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 98.66 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 98.61 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.6 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 98.42 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 98.39 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 98.39 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function p | 98.36 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 98.35 | |
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 98.31 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 98.29 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 98.23 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 98.22 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 98.2 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 98.18 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 98.14 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 98.11 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 98.1 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 98.1 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 98.07 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 98.07 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 98.03 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 98.02 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 98.02 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 98.0 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 97.95 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 97.84 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 97.74 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 97.74 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 97.7 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 97.66 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 97.65 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 97.57 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.54 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 97.49 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 97.49 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 97.37 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 97.3 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 97.24 | |
| PRK14057 | 254 | epimerase; Provisional | 97.24 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 97.19 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.18 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.12 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 97.09 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 97.08 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 97.05 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 97.03 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 96.96 | |
| PRK08005 | 210 | epimerase; Validated | 96.93 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 96.81 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 96.64 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 96.63 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 96.57 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 96.56 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 96.17 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 96.16 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 96.13 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 95.96 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 95.82 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 95.79 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 95.72 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 95.65 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 95.33 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 95.21 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 95.21 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 95.21 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 95.19 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 94.72 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 94.6 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 94.56 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 94.45 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 93.86 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 93.77 | |
| PRK15452 | 443 | putative protease; Provisional | 93.71 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 93.64 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 93.44 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 93.33 | |
| COG2875 | 254 | CobM Precorrin-4 methylase [Coenzyme metabolism] | 93.13 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 93.07 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 93.07 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 92.85 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 92.64 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 92.5 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 92.32 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 92.3 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 92.24 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 92.15 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 92.1 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 91.91 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 91.71 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 91.67 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 91.59 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 91.52 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 91.18 | |
| PF05913 | 357 | DUF871: Bacterial protein of unknown function (DUF | 91.15 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 91.09 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 91.0 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 90.9 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 90.85 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 90.63 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 90.55 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 90.52 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 90.52 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 90.49 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 90.26 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 90.24 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.04 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 90.04 | |
| PF10113 | 505 | Fibrillarin_2: Fibrillarin-like archaeal protein; | 89.95 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 89.85 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 89.66 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 89.64 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 89.22 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 88.93 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 88.87 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 88.66 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 88.52 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 88.24 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 88.17 | |
| PLN02591 | 250 | tryptophan synthase | 88.1 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 88.08 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 88.06 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 87.56 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 87.55 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.11 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 86.97 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 86.66 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 86.65 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 86.64 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 86.59 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 86.45 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 86.34 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 86.26 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 86.26 | |
| cd06543 | 294 | GH18_PF-ChiA-like PF-ChiA is an uncharacterized ch | 86.15 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 86.04 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 86.02 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 85.93 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 85.83 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 85.75 | |
| PRK09490 | 1229 | metH B12-dependent methionine synthase; Provisiona | 85.4 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 85.17 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 85.12 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 84.94 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 84.43 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 84.19 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 84.0 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 83.77 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 83.74 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 83.56 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 83.19 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 82.86 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 82.85 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 82.75 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 82.18 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.12 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 81.66 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 81.3 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 81.04 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 80.63 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 80.51 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 80.49 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 80.43 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 80.33 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 80.25 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 80.01 |
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=426.78 Aligned_cols=375 Identities=62% Similarity=1.004 Sum_probs=346.4
Q ss_pred CccchhhhhccCcceeccCccccc--ccccccCCccchHHHHHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHH
Q 016605 1 MMSFRSLLRSQRSLSLRPSKKFLA--LHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHR 78 (386)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r 78 (386)
||+-|+..|.+ | +|+.+ ..++.+..+.+.+-.+..+...++|.++||++|+..+|+.|++++++.++.++|
T Consensus 1 mM~tr~t~R~q----l---r~~~t~~~~S~t~~ssls~~~a~~~~~~~~~prn~Wtr~eik~iYdtPLldL~f~aa~~HR 73 (380)
T KOG2900|consen 1 MMSTRYTARPQ----L---RKYATAAVKSTTASSSLSTLGALQYALSLDEPRNSWTRSEIKEIYDTPLLDLTFAAALQHR 73 (380)
T ss_pred CcchHHhhHHH----h---hhhhhhhhccchhhhhhhhhhhhHHHhhccCCcccccHHHHHHHhcchHHHHHHHHHHHHh
Confidence 89999876654 2 44444 333344455566677888888889999999999999999999999999999999
Q ss_pred hhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhH
Q 016605 79 HAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 158 (386)
Q Consensus 79 ~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~ 158 (386)
+.|.+.+|+.|.+++|+|.+|..+|.||+++..++++.+..+.+..||+++.++.+++.|.++||++..|+++.|....+
T Consensus 74 k~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~f 153 (380)
T KOG2900|consen 74 KWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAF 153 (380)
T ss_pred hhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHH
Confidence 99999999999999999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEe
Q 016605 159 NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSG 238 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~ 238 (386)
.+++++|++++.+|+++|++.|.++..++++||++|+..+++++|+.++.|.++....++++++++|++++++||.++++
T Consensus 154 k~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr~aGikvCsG 233 (380)
T KOG2900|consen 154 KRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREAGIKVCSG 233 (380)
T ss_pred HHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHHHhcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCcceeecCccccc
Q 016605 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 316 (386)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~--~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~ 316 (386)
.|+|+||.++|.+.++..+..++.||++++|+.++|++|||+++ ..++..++++++++.+|+++|+.+|++++|+..+
T Consensus 234 GIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e~lR~IaTARIvMPKaiiRlaAGR~t~ 313 (380)
T KOG2900|consen 234 GILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDEILRTIATARIVMPKAIIRLAAGRYTM 313 (380)
T ss_pred ccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHHHHHHHhhhheechHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999987 6778999999999999999999999999999999
Q ss_pred ChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCCCccccccchhhhhHHHhhhcC
Q 016605 317 SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHS 385 (386)
Q Consensus 317 ~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (386)
....+.++|.+|||++|+|++++|+.+.+.++|..|+..+|+.|++. |.|.- +|+.|.|+..++.|
T Consensus 314 sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~-f~y~~--sse~en~ekva~a~ 379 (380)
T KOG2900|consen 314 SESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA-FKYDR--SSESENCEKVASAS 379 (380)
T ss_pred chhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCcc-cccCC--CccccchhhccCCC
Confidence 99999999999999999999999999999999999999999999984 65543 46888899887764
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=448.49 Aligned_cols=337 Identities=85% Similarity=1.335 Sum_probs=305.1
Q ss_pred CCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
....||++|++.||+.+..+++..|+.++++++.+++|++++++++.|++|+.+|.||+++..++.+.+.++.+++|+|+
T Consensus 43 ~~~~lt~~e~l~L~~~~l~~l~~~A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl 122 (379)
T PLN02389 43 PRNDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVL 122 (379)
T ss_pred ccCCCCHHHHHHHHcCcHHHHHHHHHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHH
Confidence 46789999999999778888888888887777767799999999998999999999999986544445557779999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHH
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~ 208 (386)
+.++.+.+.|+++|++++++..+.++|..++++.++++.+|+.++++++++|.++++.+++|+++|++++++++|+.++.
T Consensus 123 ~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~ 202 (379)
T PLN02389 123 EAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREY 202 (379)
T ss_pred HHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHH
Confidence 99999999999999998766666677778999999999999889999999999999999999999999999999998889
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCH
Q 016605 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEI 288 (386)
Q Consensus 209 ~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~ 288 (386)
|++++++++|++++++++.++++|+++++++|+|+||+.+|+.+++.++++++.+++.++++.|+|.|||||.+.++++.
T Consensus 203 y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~ 282 (379)
T PLN02389 203 YPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEI 282 (379)
T ss_pred hCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999996558999999999999999998888999
Q ss_pred HHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCCCccc
Q 016605 289 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEG 368 (386)
Q Consensus 289 ~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~ 368 (386)
++.+++++++|+++|+..+++++||..++++.++.+|.+|||++|+|+-++|+.|.++++|++||+++||.|..-.+...
T Consensus 283 ~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~~~~~~~~~~~ 362 (379)
T PLN02389 283 WEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIPKPPSFGED 362 (379)
T ss_pred HHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999888999999999999999933999999999999999999999985544333
Q ss_pred cccchhhhhHHHhhhcC
Q 016605 369 EANVSEAESCQEAVSHS 385 (386)
Q Consensus 369 ~~~~~~~~~~~~~~~~~ 385 (386)
.-..|++|+|+||+++|
T Consensus 363 ~~~~~~~~~~~~~~~~~ 379 (379)
T PLN02389 363 EERASEAERCEEAVSSS 379 (379)
T ss_pred cccccccchHHHHhccC
Confidence 33346899999999875
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=410.45 Aligned_cols=311 Identities=55% Similarity=0.903 Sum_probs=294.6
Q ss_pred CCCCCHHHHHHhcCCChHH-HHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 50 RHDWSKDDIKSIYDSPVLD-LLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 50 ~~~ls~ee~~~l~~~~~~~-~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
+..||.+|+..||+.|+.+ ++..+|..+|++|+|+.|+++.+++++|..|+.+|.||++++++..+...++.+++|+|+
T Consensus 11 ~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIl 90 (335)
T COG0502 11 GERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEIL 90 (335)
T ss_pred cCCcCHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHH
Confidence 5789999999999987777 899999999999999999999999998888899999999998876777788889999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHH
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
+.++.+++.|+.+++++++|.. .+ ...+++.++++.+| +.+++++++.|.++++.+++|+++|++++++++||.++
T Consensus 91 e~Ak~ak~~Ga~r~c~~aagr~-~~--~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~ 167 (335)
T COG0502 91 EAAKKAKAAGATRFCMGAAGRG-PG--RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPE 167 (335)
T ss_pred HHHHHHHHcCCceEEEEEeccC-CC--ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHH
Confidence 9999999999999999988875 33 57899999999999 78999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVE 287 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s 287 (386)
.|++|+++++|++++++++.++++|+.++++.|+|+||+.+|+.+++..++++.. +++|+|+.|+|.|||||++.++++
T Consensus 168 ~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~ 246 (335)
T COG0502 168 FYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLD 246 (335)
T ss_pred HHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999963 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCC
Q 016605 288 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPS 364 (386)
Q Consensus 288 ~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~ 364 (386)
+.++++++|++|+++|+..|++++|+....+..+..+|.+|||++++|+.++|+.++..++|..||+++|+.|..+.
T Consensus 247 ~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~~ 323 (335)
T COG0502 247 PFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELLN 323 (335)
T ss_pred HHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998753
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=415.15 Aligned_cols=319 Identities=55% Similarity=0.948 Sum_probs=287.4
Q ss_pred CCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
..++||++|++.|++.+..+++..|..+++++|.++.++++.++++.|+.|+.+|.||+++..+..+.+.++.+++|||+
T Consensus 3 ~~~~l~~~e~~~l~~~~l~~l~~~A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~ 82 (345)
T PRK15108 3 HRPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVL 82 (345)
T ss_pred ccCCCCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHH
Confidence 36899999999999888888888666665666544689999998888999999999999986443344456679999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHH
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~ 208 (386)
+.++.+.+.|+++|++++++..+. ...++++.++++.+|+.++.+++++|.++++.+++|+++|+|++++++|+.++.
T Consensus 83 ~~a~~~~~~G~~~i~i~~~g~~p~--~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~ 160 (345)
T PRK15108 83 ESARKAKAAGSTRFCMGAAWKNPH--ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF 160 (345)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCC--cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHh
Confidence 999999999999999987653221 246799999999999888888899999999999999999999999999999899
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCH
Q 016605 209 YSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEI 288 (386)
Q Consensus 209 ~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~ 288 (386)
|.++++++++++++++++.++++|+.+++++|+|+||+.+|+.+++..+++++..+++++++.|+|.+||||++.++.+.
T Consensus 161 f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~ 240 (345)
T PRK15108 161 YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA 240 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999996547799999999999999998888899
Q ss_pred HHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCCCccc
Q 016605 289 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEG 368 (386)
Q Consensus 289 ~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~ 368 (386)
.+.+++++++|+++|+..+++++||..+.++.++.+|.+|||++|.|+.++|+.+.+.+++++||+++||+|++||+.|.
T Consensus 241 ~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~~~~~ 320 (345)
T PRK15108 241 FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAG 320 (345)
T ss_pred HHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999888888999999999999999977899999999999999999999999999995
Q ss_pred c
Q 016605 369 E 369 (386)
Q Consensus 369 ~ 369 (386)
.
T Consensus 321 ~ 321 (345)
T PRK15108 321 D 321 (345)
T ss_pred c
Confidence 5
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=389.81 Aligned_cols=318 Identities=17% Similarity=0.214 Sum_probs=277.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEE--EeeeecCCCCCcCCCCCCCCCCCCCCC
Q 016605 39 IEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGV 116 (386)
Q Consensus 39 ~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~ 116 (386)
++++|+.+ |+++|++|++.||+.+ ++.+..+|+..|++++|++|+++ .++++ ||.|..+|.||+|+...+ ..
T Consensus 2 ~i~~kv~~---g~~ls~eeal~Ll~~d-l~~L~~~A~~vR~~~~G~~Vt~~~n~~In~-TN~C~~~C~FCaf~~~~~-~~ 75 (353)
T PRK08444 2 DLIEKLEN---NERLNQEEAVKLYDLD-LFTLGKYADKKRTKLHGKKVYFNVNRHINP-TNICADVCKFCAFSAHRK-NP 75 (353)
T ss_pred hHHHHHhc---CCCCCHHHHHHHhhcC-HHHHHHHHHHHHHHhcCCEEEEEecCCccc-ccccccCCccCCCccCCC-CC
Confidence 47899999 8999999999999764 45555666666667679999998 66888 999999999999987643 23
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE-----------ecCCCC
Q 016605 117 KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLE 183 (386)
Q Consensus 117 ~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~-----------t~g~l~ 183 (386)
..| .+++|||++.++++.+.|+++|+++||.++. ..++++.++++.+|+. ++.++. ..|...
T Consensus 76 ~~y-~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~----~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~ 150 (353)
T PRK08444 76 NPY-TMSHEEILEIVKNSVKRGIKEVHIVSAHNPN----YGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSY 150 (353)
T ss_pred ccc-cCCHHHHHHHHHHHHHCCCCEEEEeccCCCC----CCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCH
Confidence 445 4899999999999999999999999986553 3578899999999964 566665 678889
Q ss_pred HHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 184 KHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
+|.+++|+++|++++++ +.|.+ +++++.|+++| +.++|++.++.++++|+++++++|||+|||.+|+.+++..++++
T Consensus 151 ~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~L 230 (353)
T PRK08444 151 EEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDL 230 (353)
T ss_pred HHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHh
Confidence 99999999999999999 69999 99999999988 55888999999999999999999999999999999999999999
Q ss_pred CCCCCeEeeeeeeec----CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---c
Q 016605 261 PTHPESVPINALLAV----KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---F 333 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~----~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~ 333 (386)
+ +++++|+.|+|+ +|||+.+.++++..+.++++|++|+++|+ +.+++++|+..+....+.+|.+||||+ +
T Consensus 231 q--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~-i~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~ 307 (353)
T PRK08444 231 Q--DKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDN-IPHIKAYWATLTLNLALVAQEFGANDLDGTI 307 (353)
T ss_pred c--cccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCC-CCccccccccCcHHHHHHHHhcCCccCcccc
Confidence 7 899999999999 89999988889999999999999999998 568999999999999999999999998 4
Q ss_pred cCCccccC------CCCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 334 TGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 334 ~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
.++++... ..++.+++.++|+++|++|++||+.|+..
T Consensus 308 ~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~p~~R~t~y~~~ 350 (353)
T PRK08444 308 EKESIQSAAGAKSANGLSLEDFIFLIKDSGFIPVERDSLYNEL 350 (353)
T ss_pred ccccchhhccCCCCCCCCHHHHHHHHHHcCCCeeeecCCCCee
Confidence 44544322 25789999999999999999999999875
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=378.59 Aligned_cols=322 Identities=34% Similarity=0.564 Sum_probs=284.3
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHhcCCC--hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCC
Q 016605 36 AAAIEAERTIREGPRHDWSKDDIKSIYDSP--VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYD 113 (386)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~--~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~ 113 (386)
.+.++++++++ |+.+|++|++.||+.+ ..+.+..+|...|++++|+.+.++.+++++|++|+.+|.||+++..+.
T Consensus 6 ~~~~~~~~~~~---g~~~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~ 82 (336)
T PRK06256 6 DILKLARKLLE---GEGLTKEEALALLEIPDDDLLELLAAAYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSS 82 (336)
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHHHhCCCeEEEEEeeeccCCCCCCCCccCCCcCCCC
Confidence 46789999999 8999999999999753 456677777777888889999999998887999999999999986543
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHH
Q 016605 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK 192 (386)
Q Consensus 114 ~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~ 192 (386)
.....++.+++|+|++.++.+.+.|+.++++++++..+.. ..++++.++++.+++ .++.++++.|.++++.++.|++
T Consensus 83 ~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~--~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~Lke 160 (336)
T PRK06256 83 APVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSG--KEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKE 160 (336)
T ss_pred CCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc--hHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHH
Confidence 2233466689999999999999999989988765543322 345789999999985 4677888899999999999999
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
+|++++.+++|+.+++|+++++++++++++++++.++++|+.+++++|+|+|||.+|+.+++.++++++ ++.++++.|
T Consensus 161 aG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l 238 (336)
T PRK06256 161 AGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFL 238 (336)
T ss_pred hCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCC--CCEEeeccc
Confidence 999999999999878999999999999999999999999999999999999999999999999999996 889999999
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHH
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~ 352 (386)
+|.||||+.+.++++.++++++++++|+++|+..|++++||.....+.+..+| +|||.+++|+ |+|+.|.+.++|++|
T Consensus 239 ~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~-~lt~~g~~~~~d~~~ 316 (336)
T PRK06256 239 NPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGN-YLTTVGQPATADLDM 316 (336)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECC-cccCCCCChHHHHHH
Confidence 99999999988889999999999999999999999999999655566788899 8999999999 999999999999999
Q ss_pred HHHcCCCcCCCCCc
Q 016605 353 FKVLGLTPKAPSFH 366 (386)
Q Consensus 353 i~~~G~~p~~~~~~ 366 (386)
|+++||.|...+..
T Consensus 317 ~~~~g~~~~~~~~~ 330 (336)
T PRK06256 317 IEDLGFEIELDALK 330 (336)
T ss_pred HHHCCCCcccCcch
Confidence 99999999665553
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=370.84 Aligned_cols=317 Identities=18% Similarity=0.214 Sum_probs=271.9
Q ss_pred HHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEE--EeeeecCCCCCcCCCCCCCCCCCCCCCc
Q 016605 40 EAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVK 117 (386)
Q Consensus 40 ~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 117 (386)
|++|+++ |+++|++|++.||+.++.+.+..+|+.+|++++|+.|+++ .++++ |++|+.+|.||+++..... ..
T Consensus 1 ~~~~~~~---~~~ls~~e~~~L~~~~~~~~L~~~A~~vr~~~~g~~v~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~-~~ 75 (351)
T TIGR03700 1 IREKVEA---GQRLSFEDGLFLYASDDLLTLGELAALVRERKHGDKVYFNVNRHLNY-TNICVNGCAFCAFQRERGE-PG 75 (351)
T ss_pred CchHHhC---CCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCeEEEeccCCccc-ccccccCCccCceeCCCCC-cc
Confidence 3678888 8899999999999766666667777777777789999998 66886 9999999999999865422 23
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE-----------ecCCCCH
Q 016605 118 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEK 184 (386)
Q Consensus 118 ~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~-----------t~g~l~~ 184 (386)
.|. +++|||++.++.+.+.|++++++++|..+. ..++++.++++.+|+. ++.++. ..|..++
T Consensus 76 ~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~----~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~ 150 (351)
T TIGR03700 76 AYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPN----LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTE 150 (351)
T ss_pred cCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCC----CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHH
Confidence 454 899999999999999999999999765432 3468999999999865 355432 2577889
Q ss_pred HHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 185 HQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
+.+++|+++|++++.+ ++|++ +++++.+++++ ++++++++++.++++|+++++++|+|+|||++|+.+++..+++++
T Consensus 151 e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~ 230 (351)
T TIGR03700 151 EVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQ 230 (351)
T ss_pred HHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999985 89999 99999999876 688999999999999999999999999999999999999999997
Q ss_pred CCCCeEeeeeeeecC----CCCCCCC--CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---
Q 016605 262 THPESVPINALLAVK----GTPLQDQ--KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 262 ~~~~~v~~~~f~P~~----gT~l~~~--~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
+++.+|+.|+|++ ||||++. ++++..+.++++|++|+++|+ +.+|++.|...+++..+.+|.+||||+
T Consensus 231 --~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~-i~~i~a~w~~~~~~~~~~~L~~Gand~ggt 307 (351)
T TIGR03700 231 --DETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDN-IPHIKAYWVMLGLKLAQVALAFGVNDLDGT 307 (351)
T ss_pred --HhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCC-CCcccccccccCHHHHHHHHhcCCCCCCcc
Confidence 7889999999994 9999876 778999999999999999998 678999999999989999999999998
Q ss_pred ccCCccccC------CCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 333 FTGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 333 ~~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
+.++++... ..++.+++..+|+++|++|++|++.|+.
T Consensus 308 ~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p~~r~~~y~~ 350 (351)
T TIGR03700 308 VVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVPVERDTLYNE 350 (351)
T ss_pred CccceeeccccCCCCCCCCHHHHHHHHHHcCCCeeeecCCCCc
Confidence 334433322 3468999999999999999999999985
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=369.40 Aligned_cols=325 Identities=19% Similarity=0.245 Sum_probs=275.9
Q ss_pred chHHHHHHHHhhcCCCCCCCHHHHHHhcCCCh---HHHHHHHHHHHHhhcCCCeeEEEEe--eeecCCCCCcCCCCCCCC
Q 016605 35 SAAAIEAERTIREGPRHDWSKDDIKSIYDSPV---LDLLFHGAQVHRHAHNFREVQQCTL--LSIKTGGCSEDCSYCPQS 109 (386)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~---~~~l~~aa~~~r~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~ 109 (386)
+-+.++++++++ |+++|++|++.||+.+. .+.+..+|+.+|++++|++|+++.. +++ |+.|+.+|.||+|+
T Consensus 5 ~~~~~~~~~~~~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~~~~~~~i~~-Tn~C~~~C~fC~~~ 80 (371)
T PRK07360 5 QIFEDILERARK---GKDLSKEDALELLETTEPRRIFEILELADRLRKEQVGDTVTYVVNRNINF-TNICEGHCGFCAFR 80 (371)
T ss_pred HHHHHHHHHHhc---CCCCCHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCccc-chhhhcCCccCCcc
Confidence 346789999999 89999999999997643 6778888888888888999998544 566 99999999999998
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE----------
Q 016605 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC---------- 177 (386)
Q Consensus 110 ~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~---------- 177 (386)
... .....|. ++.|||++.++++.+.|+++|+++||..+.. ..++++.++++.+|+. ++.++.
T Consensus 81 ~~~-~~~~~y~-ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~---~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~ 155 (371)
T PRK07360 81 RDE-GDHGAFW-LTIAEILEKAAEAVKRGATEVCIQGGLHPAA---DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAA 155 (371)
T ss_pred cCC-CCCCCee-CCHHHHHHHHHHHHhCCCCEEEEccCCCCCC---CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHH
Confidence 753 3444554 9999999999999999999999997654321 1368899999999963 455543
Q ss_pred -ecCCCCHHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 178 -TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 178 -t~g~l~~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
+.|..+++.+++|++||+++++- +.+.+ +++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+.++
T Consensus 156 ~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~ 235 (371)
T PRK07360 156 REDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDH 235 (371)
T ss_pred hhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHH
Confidence 46888999999999999999974 45666 78888888865 9999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEeeeeeeecC----CCCCCCCC----CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhh
Q 016605 254 LHTLATLPTHPESVPINALLAVK----GTPLQDQK----PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 325 (386)
Q Consensus 254 l~~l~~l~~~~~~v~~~~f~P~~----gT~l~~~~----~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l 325 (386)
+.++++++ +++++|..|+|++ |||+++.. +.+..+.++++|++|+++|+..++++++|..+++..++.+|
T Consensus 236 l~~lr~l~--~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l 313 (371)
T PRK07360 236 LLILREIQ--QETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVAL 313 (371)
T ss_pred HHHHHHhc--hhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHH
Confidence 99999997 8899999999965 99997643 24677779999999999999888999999888887778899
Q ss_pred hcCcccc---ccCCccccCC------CCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 326 LAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 326 ~~Gan~~---~~g~~~~t~~------~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
.+|||++ ++++.+.+.. .++.+++.+||+++||+|++|++.|+..
T Consensus 314 ~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~~~r~~~y~~~ 367 (371)
T PRK07360 314 NCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGRIPKQRDTLYEII 367 (371)
T ss_pred hcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCCceeeecCCcchh
Confidence 9999999 7777344323 3699999999999999999999999876
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=364.79 Aligned_cols=319 Identities=18% Similarity=0.165 Sum_probs=269.2
Q ss_pred chHHHHHHHHhhcCCCCCCCHHHHHHhcCC---ChHHHHHHHHHHHHhhcCCCeeEEEEeeee-cCCCCCcCCCCCCCCC
Q 016605 35 SAAAIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSI-KTGGCSEDCSYCPQSS 110 (386)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i-~t~~C~~~C~fC~~~~ 110 (386)
+.+.++++|+++ |+++|++|++.||+. ++...+..+|+.+|++++|+.|+++.++++ .||.|..+|.||+|+.
T Consensus 13 ~~~~~~~~kv~~---g~~ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~ 89 (370)
T PRK05926 13 SWLKTLFDDYLS---GARLSEEDALQLLLLTDAEDQRALWSFADLIRANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYA 89 (370)
T ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCCeEEEEEeeeeecCCCCCCCCCcccccc
Confidence 346779999999 899999999999943 455666777777777778999999999876 4999999999999875
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEec---------
Q 016605 111 RYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTL--------- 179 (386)
Q Consensus 111 ~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~--------- 179 (386)
. .+...++.+++|||++.++++ ..|+++|++++|..+ ...++++.++++.+++. ++.++...
T Consensus 90 ~--~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p----~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~ 162 (370)
T PRK05926 90 K--PGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFP----SCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSK 162 (370)
T ss_pred C--CCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCC----CCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHh
Confidence 4 233455669999999999998 689999999986543 24678999999999965 46554322
Q ss_pred --CCCCHHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHH
Q 016605 180 --GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (386)
Q Consensus 180 --g~l~~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 254 (386)
+..+++.+++|+++|++++++ +.|++ ++.++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+++++
T Consensus 163 ~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l 242 (370)
T PRK05926 163 LDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHM 242 (370)
T ss_pred hcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHH
Confidence 446799999999999999998 59999 89999998855 78999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCeEeeeeeeecC----CCCCCC----CCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhh
Q 016605 255 HTLATLPTHPESVPINALLAVK----GTPLQD----QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL 326 (386)
Q Consensus 255 ~~l~~l~~~~~~v~~~~f~P~~----gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~ 326 (386)
..+++++ +++++|..|+|++ +|++.. .+..+..+.++++|++|++|++ +.+++++|+.++.+..+.+|.
T Consensus 243 ~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n-~~~iqa~w~~~G~~~~q~~L~ 319 (370)
T PRK05926 243 SKLRALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDN-FPNIKALWNYLGIEVALHLLS 319 (370)
T ss_pred HHHHhcC--CccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCC-CcccccCchhcCHHHHHHHHh
Confidence 9999997 8999999999944 888753 3357888899999999999997 689999999999888999999
Q ss_pred cCcccc---ccCCccccC------CCCChhHHHHHHHHcCCCcCCCCCc
Q 016605 327 AGANSI---FTGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFH 366 (386)
Q Consensus 327 ~Gan~~---~~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~ 366 (386)
+||||+ +.++++... ...+.+++..+|+++|++|++||+.
T Consensus 320 ~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~p~~rd~~ 368 (370)
T PRK05926 320 CGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRIPCLTNSK 368 (370)
T ss_pred CCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCCceecCCC
Confidence 999999 344544322 2467899999999999999999984
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=361.24 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=260.9
Q ss_pred CCHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCCeeEEEEe--eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHH
Q 016605 53 WSKDDIKSIYDS-PVLDLLFHGAQVHRHAHNFREVQQCTL--LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (386)
Q Consensus 53 ls~ee~~~l~~~-~~~~~l~~aa~~~r~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~ 129 (386)
+|++|++.||+. ++.+.+..+|+.+|++++|++|+++.. +++ |++|+.+|.||+++... .....+. +++|+|++
T Consensus 1 ls~~e~~~ll~~~~~~~~L~~~A~~ir~~~~g~~v~~~~~~~i~~-T~~C~~~C~FC~~~~~~-~~~~~y~-ls~eeI~e 77 (343)
T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRRDIVGDTVTYVVNRNINF-TNVCYGGCGFCAFRKRK-GDADAYL-LSLEEIAE 77 (343)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHhcCCeEEEEeeecccc-ccccccCCccCCCccCC-CCCCccc-CCHHHHHH
Confidence 689999999975 566777888888888888999998654 455 99999999999998643 2223354 89999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEE-----------ecCCCCHHHHHHHHHhccC
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~-----------t~g~l~~e~l~~Lk~aG~~ 196 (386)
.++.+.+.|+++|+|+||..+. ...+++.++++.+++. ++.++. +.|.++++.+++||+||++
T Consensus 78 ~~~~~~~~G~~~i~l~gG~~p~----~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~ 153 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIHPD----LDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD 153 (343)
T ss_pred HHHHHHHCCCCEEEEEeCCCCC----CCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 9999999999999999764322 3567889999999865 455432 5788999999999999999
Q ss_pred eeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+++. +.|++ +++++++++++ ++++++++++.++++|+.+++++|+|++||.+|+.+++.++++++ ++..+|..|+
T Consensus 154 ~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~i 231 (343)
T TIGR03551 154 SMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ--EETGGFTEFV 231 (343)
T ss_pred cccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEE
Confidence 9984 67888 89999999876 999999999999999999999999999999999999999999996 7888999999
Q ss_pred ecC----CCCCCC----CCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---ccCCccccC-
Q 016605 274 AVK----GTPLQD----QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTT- 341 (386)
Q Consensus 274 P~~----gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~- 341 (386)
|+| ||++.. .++++.++.++++|++|+++|+.+++++++|..+++..++.+|.+|||++ +.++++...
T Consensus 232 P~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~ 311 (343)
T TIGR03551 232 PLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAA 311 (343)
T ss_pred eccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCccceeccccccc
Confidence 977 999964 24579999999999999999998899999999998887899999999998 333433322
Q ss_pred -----CCCChhHHHHHHHHcCCCcCCCCCccc
Q 016605 342 -----PNNDFDADQLMFKVLGLTPKAPSFHEG 368 (386)
Q Consensus 342 -----~~~~~~~~~~~i~~~G~~p~~~~~~~~ 368 (386)
..++.+++..+|+++||+|++|++.|+
T Consensus 312 g~~~~~~~~~~~~~~~i~~~g~~~~~r~~~y~ 343 (343)
T TIGR03551 312 GASHGEYLSPEELEAIIEDAGRIPKQRTTLYE 343 (343)
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCeeecCCCCC
Confidence 357889999999999999999999986
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=358.13 Aligned_cols=310 Identities=17% Similarity=0.219 Sum_probs=261.6
Q ss_pred CCCCHHHHHHhcCCChHHHHHHHHHHHHhhcC-CCeeEEEEeeeec-CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHH
Q 016605 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHN-FREVQQCTLLSIK-TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVM 128 (386)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~-g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~ 128 (386)
+++|++|++.||+.+..+.+..+|+.+|++++ |++|+++...++. |++|+.+|.||+++... +...++.+++|+|+
T Consensus 1 ~~l~~~~~~~ll~~~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~--~~~~~~~ls~eei~ 78 (340)
T TIGR03699 1 ERLSREEALELYKEADLLALGALADEVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAP--GHPEGYVLSVEEIL 78 (340)
T ss_pred CCCCHHHHHHHccCCcHHHHHHHHHHHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCC--CCccccCCCHHHHH
Confidence 47999999999986666667777777777777 9999987664443 99999999999976432 21223458999999
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cE-----------EEEecCCCCHHHHHHHHHhcc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--ME-----------VCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~-----------i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
+.++.+.+.|+++|+++||..+. ...+++.++++.+++.+ +. ++.++|..+++.+++|+++|+
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~~p~----~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~ 154 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGVNPD----LGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGL 154 (340)
T ss_pred HHHHHHHHcCCcEEEEecCCCCC----CCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCC
Confidence 99999999999999998765332 24567778888887543 32 233578778999999999999
Q ss_pred Ceeec-ccCch-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 196 TAYNH-NLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 196 ~~v~i-~le~~-~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
++++. ++|++ +++++.+.+. .++++++++++.++++|+.+++++|+|+|||.+|+.+++.++++++ ++.++|..|
T Consensus 155 ~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~f 232 (340)
T TIGR03699 155 DSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQ--DKTGGFTAF 232 (340)
T ss_pred CcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEE
Confidence 99995 79999 8999999775 4899999999999999999999999999999999999999999996 778888888
Q ss_pred eec----CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 273 LAV----KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 273 ~P~----~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
+|. +|||+++.++++.++.++++|++|+++|+ +++++++|..++.+.++.+|.+|||++ +..+.+.++.+.+
T Consensus 233 IP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~ 311 (340)
T TIGR03699 233 IPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEENVVAAAGAT 311 (340)
T ss_pred EeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-CCcccCCccccChHHHHHHHhcCCccCCCccccccccccCCCC
Confidence 885 59999988889999999999999999999 889999999898888899999999993 3434488877766
Q ss_pred h----hHHHHHHHHcCCCcCCCCCcccc
Q 016605 346 F----DADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 346 ~----~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
. +++.+||+++|++|++|++.|++
T Consensus 312 ~~~~~~~~~~~i~~~g~~~~~r~~~y~~ 339 (340)
T TIGR03699 312 HRASREEIIRIIREAGFIPAQRDTLYNI 339 (340)
T ss_pred CCCCHHHHHHHHHHcCCCeeeecCcccc
Confidence 6 99999999999999999999986
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=355.90 Aligned_cols=310 Identities=15% Similarity=0.188 Sum_probs=256.5
Q ss_pred CCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEE---eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHH
Q 016605 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCT---LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAV 127 (386)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~---~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI 127 (386)
+++|++|++.||+..+.+.+..+|+.+|++++|+++.++. ++++ |++|+.+|.||+++..++.. ..| .+++|+|
T Consensus 2 ~~ls~~e~l~Ll~~~~l~~L~~~A~~vr~~~~g~~v~~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~eeI 78 (348)
T PRK08445 2 KRLSKEEALDLIKNAPLKELGEMALERKQELHPEKITTFIVDRNINY-TNICWVDCKFCAFYRHLKED-DAY-ILSFEEI 78 (348)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCcEEEEeccccccc-ccccccCCccCCCccCCCCC-CCe-eCCHHHH
Confidence 5899999999997666666677777777777788876544 4777 99999999999998754322 455 5899999
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEE-e----------cCCCCHHHHHHHHHhc
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCC-T----------LGMLEKHQAIELKKAG 194 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~-t----------~g~l~~e~l~~Lk~aG 194 (386)
++.++++.+.|.++|+++||..+ ....+++.++++.+++.. +.++. + .+...+|.+++||++|
T Consensus 79 ~~~~~~a~~~g~~~i~~~gg~~~----~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAG 154 (348)
T PRK08445 79 DKKIEELLAIGGTQILFQGGVHP----KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKG 154 (348)
T ss_pred HHHHHHHHHcCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 99999999999999999886533 245788999999998653 44321 1 1233489999999999
Q ss_pred cCeee-cccCch-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 195 LTAYN-HNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 195 ~~~v~-i~le~~-~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
+++++ .++|++ +++++.+++ ..+.++|+++++.++++|+++++++|+|++||.+|+.+++..+++++ +++.+|..
T Consensus 155 l~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~ 232 (348)
T PRK08445 155 LSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFRA 232 (348)
T ss_pred CCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCeeE
Confidence 99997 589999 899999977 55899999999999999999999999999999999999999999997 66766666
Q ss_pred ee----ecCCCCCCC----CCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 272 LL----AVKGTPLQD----QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 272 f~----P~~gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
|+ +.+|||+.. .+.++..+.++++|++|+++|+ +.+++++|..++...++.+|.+|||++ +.++++..
T Consensus 233 fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~-~~~i~a~~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~ 311 (348)
T PRK08445 233 FILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDN-FKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVK 311 (348)
T ss_pred EeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCC-CCCccCCCcccCHHHHHHHHhcCCccCccccccccchh
Confidence 55 347999874 3458999999999999999998 789999999888888899999999998 44454433
Q ss_pred C----CCCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 341 T----PNNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 341 ~----~~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
. .+.+.+++..+|+++||+|++||+.|++.
T Consensus 312 ~ag~~~~~~~~~~~~~i~~~g~~p~~r~t~y~~~ 345 (348)
T PRK08445 312 AAGASFRMNQAEMIELIKDIGEIPAKRNTAYEIL 345 (348)
T ss_pred ccCCCCCCCHHHHHHHHHHcCCCeeeecCCCCee
Confidence 2 34688999999999999999999999875
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=343.54 Aligned_cols=273 Identities=36% Similarity=0.604 Sum_probs=245.7
Q ss_pred CeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHH
Q 016605 84 REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILE 163 (386)
Q Consensus 84 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~ 163 (386)
++|.++++++++|.+|+.+|.||+++..++...+.|+.+++|+|++.++++.+.|+.+|++++++... . +..++++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~-~-~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL-D-DKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC-C-cccHHHHHH
Confidence 57899999999999999999999998755444456777899999999999999999999986544321 1 247799999
Q ss_pred HHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe
Q 016605 164 YVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 241 (386)
Q Consensus 164 ~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~ 241 (386)
+++.+|+. ++.++.++|.++++.+++|+++|++++++++|+.++.|++++++++|++++++++.++++|+++++++|+
T Consensus 80 i~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 80 AAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 99999965 4567778999999999999999999999999999889999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHH
Q 016605 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 321 (386)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~ 321 (386)
|+|||.+|+.+++.++++++ +++++++.|.|.+|||+.. ++.+.++.++++|++|+++|+..|++++|+.....+.+
T Consensus 160 GlGEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~ 236 (279)
T PRK08508 160 GLGESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQ 236 (279)
T ss_pred ecCCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhH
Confidence 99999999999999999997 7899999999999999975 56899999999999999999999999999965555678
Q ss_pred HhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCC
Q 016605 322 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 362 (386)
Q Consensus 322 ~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~ 362 (386)
..+|.+|||++++|+ |+|+.|.+.++|.+||+++||.|..
T Consensus 237 ~~~~~~g~n~~~~g~-~lt~~g~~~~~d~~~~~~~~~~~~~ 276 (279)
T PRK08508 237 YEIFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFEIAT 276 (279)
T ss_pred HHHHhcCCcceeecC-cccCCCCChHHHHHHHHHcCCCcCc
Confidence 999999999999999 9999999999999999999999863
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=351.99 Aligned_cols=313 Identities=16% Similarity=0.117 Sum_probs=262.0
Q ss_pred CCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcC-CCeeEEEEeeeec-CCCCCcCCCCCCCCCCCCCCCcccCCCCHHH
Q 016605 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHN-FREVQQCTLLSIK-TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA 126 (386)
Q Consensus 49 ~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~-g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee 126 (386)
.++++|++|++.||+.++.+.+..+|+.+|++++ |+.|+++.+.+++ |+.|+.+|.||+|+...+ ....| .+++||
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~~~~G~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~-~~~~y-~ls~ee 80 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPH-SSDAY-LLSFDE 80 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCeEEEEcccCCccchhhhcCCccCCccCCCC-Ccccc-ccCHHH
Confidence 3789999999999976666666777766777766 7999976554443 999999999999986532 22334 699999
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcE-----------EEEecCCCCHHHHHHHHHh
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME-----------VCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~-----------i~~t~g~l~~e~l~~Lk~a 193 (386)
|++.++++.+.|+++|+++||.++. ..++++.++++.+|+. ++. ++.+.|.++++.+++|+++
T Consensus 81 i~~~a~~~~~~G~~~i~i~gG~~p~----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~a 156 (350)
T PRK05927 81 FRSLMQRYVSAGVKTVLLQGGVHPQ----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDA 156 (350)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCC----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHc
Confidence 9999999999999999998775432 4578999999999853 342 2455799999999999999
Q ss_pred ccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 194 GLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 194 G~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
|+++++. ++|++ +++++.+++.+ ++++|+++++.|+++|+++++++|+|+|||.+|+.+++..+++++ .+..+|.
T Consensus 157 Gl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~ 234 (350)
T PRK05927 157 GQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGFY 234 (350)
T ss_pred CcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCee
Confidence 9999998 89999 78888888766 689999999999999999999999999999999999999999997 5667899
Q ss_pred eeeec----CCCCCCCC--CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccc---cCCccccC
Q 016605 271 ALLAV----KGTPLQDQ--KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTT 341 (386)
Q Consensus 271 ~f~P~----~gT~l~~~--~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~---~g~~~~t~ 341 (386)
.|+|+ ++||+... ++++.++.++++|++|+++|+. -++++.|+..+.+..+.+|.+||||+. +.+.+...
T Consensus 235 ~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~-~~i~~~w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ 313 (350)
T PRK05927 235 SFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNF-DHIAASWFGEGKEEGAKGLHYGADDFGGTILDESVHKC 313 (350)
T ss_pred eeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCC-CcccCCccccCHHHHHHHHhCCCccccCCCccceeecc
Confidence 99997 58998753 2689999999999999999984 478889999888888999999999993 33433322
Q ss_pred ----CCCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 342 ----PNNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 342 ----~~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
...+.+++.++|+++||+|++|++.|+..
T Consensus 314 ag~~~~~~~~~l~~~i~~~G~~~~~R~~~Y~~~ 346 (350)
T PRK05927 314 TGWDLQSSEEEICAMILSEGFIPVERNTFYRPI 346 (350)
T ss_pred CCCCCcCCHHHHHHHHHHcCCCeeeecCCCccc
Confidence 23468999999999999999999999876
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=371.66 Aligned_cols=327 Identities=17% Similarity=0.226 Sum_probs=274.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHhcCC--ChHHHHHHHHHHHHhhcCCCeeEEEEe--eeecCCCCCcCCCCCCCCCCC
Q 016605 37 AAIEAERTIREGPRHDWSKDDIKSIYDS--PVLDLLFHGAQVHRHAHNFREVQQCTL--LSIKTGGCSEDCSYCPQSSRY 112 (386)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~--~~~~~l~~aa~~~r~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~ 112 (386)
.+.|.+|+.+ |+++|.+|++.||+. ++++.+..+|+.+|++++|+.|+++.+ +++ ||.|+.+|.||+|+...
T Consensus 474 ~~~l~~~~~~---g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~G~~Vt~vvn~~In~-TN~C~~~C~FCafs~~~ 549 (843)
T PRK09234 474 LAALRAAERD---PAGLTDDEALALFTADGPALEAVCRLADDLRRDVVGDDVTYVVNRNINF-TNICYTGCRFCAFAQRK 549 (843)
T ss_pred HHHHHHHHhc---CCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhcCCeEEEEEeeceec-CCCCCCCCcccccccCC
Confidence 4456778888 889999999999963 456667777777777778999998665 455 99999999999998753
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEE-----------Eec
Q 016605 113 DTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVC-----------CTL 179 (386)
Q Consensus 113 ~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~-----------~t~ 179 (386)
.....|. +++|||++.++++.+.|+++|+++||.++. ...+++.++++.+|+. ++.++ .+.
T Consensus 550 -~~~~~y~-Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~----~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~ 623 (843)
T PRK09234 550 -TDADAYT-LSLDEVADRAWEAWVAGATEVCMQGGIHPE----LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARL 623 (843)
T ss_pred -CCCCccc-CCHHHHHHHHHHHHHCCCCEEEEecCCCCC----cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHc
Confidence 3344555 899999999999999999999999875432 3578899999999964 45542 235
Q ss_pred CCCCHHHHHHHHHhccCeeec-ccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHH
Q 016605 180 GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 256 (386)
Q Consensus 180 g~l~~e~l~~Lk~aG~~~v~i-~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~ 256 (386)
|..++|.+++|+++|+++++. +-+.+ +++++.+++++ +.++|+++++.++++|+++++++|||++||.+|+.+++.+
T Consensus 624 Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~ 703 (843)
T PRK09234 624 GLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRV 703 (843)
T ss_pred CCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHH
Confidence 788999999999999999998 45566 78888898855 8999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEeeeeeeec----CCCCCC----CCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcC
Q 016605 257 LATLPTHPESVPINALLAV----KGTPLQ----DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG 328 (386)
Q Consensus 257 l~~l~~~~~~v~~~~f~P~----~gT~l~----~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~G 328 (386)
+++++ .++.+|..|+|+ ++||+. ..+.++..+.++++|++|+++|+.+++++++|++++...++.+|.+|
T Consensus 704 LreLq--~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~~G 781 (843)
T PRK09234 704 LRDIQ--DRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLRGG 781 (843)
T ss_pred HHhcC--cccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHhcC
Confidence 99997 788999999994 478763 23568999999999999999998888999999999988889999999
Q ss_pred cccc---ccCCcccc----C--CCCChhHHHHHHHHcCCCcCCCCCccccccchhhhhH
Q 016605 329 ANSI---FTGEKLLT----T--PNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESC 378 (386)
Q Consensus 329 an~~---~~g~~~~t----~--~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~ 378 (386)
||++ +.+|++.. . ..++.+++..+|+++|++|++|++.|+.. .+++-
T Consensus 782 aNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p~~R~t~Y~~~---~~~~~ 837 (843)
T PRK09234 782 ANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRPARQRTTLYGPV---AAERL 837 (843)
T ss_pred CcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCCeeeecCCCCcc---chhhh
Confidence 9999 44454442 2 24688999999999999999999999988 54443
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=345.86 Aligned_cols=315 Identities=20% Similarity=0.286 Sum_probs=268.9
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHhcCC---ChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCC
Q 016605 38 AIEAERTIREGPRHDWSKDDIKSIYDS---PVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDT 114 (386)
Q Consensus 38 ~~~~~~~~~~~~~~~ls~ee~~~l~~~---~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~ 114 (386)
+.-++++++ +++||++|++.||+. +.++.+..+|+.+|++++|++++++.++++ |+.|+.+|.||+++..+.
T Consensus 24 ~~~~~~il~---g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~- 98 (371)
T PRK09240 24 AADVERALN---KDRLSLEDLMALLSPAAEPYLEEMAQKAQRLTRQRFGNTISLYTPLYL-SNYCANDCTYCGFSMSNK- 98 (371)
T ss_pred HHHHHHHHh---cCCCCHHHHHHHhCCCChhHHHHHHHHHHHHHHHHcCCEEEEEeceEE-cccccCcCCcCCCCCCCC-
Confidence 345788999 889999999999974 456677888888888888999999999999 999999999999986532
Q ss_pred CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhc
Q 016605 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 115 ~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG 194 (386)
... +.+++|||++.++.+.+.|+++|+++||..+. ...++++.++++.+++...++.++.|.++.+.++.|+++|
T Consensus 99 -~~~-~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~---~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aG 173 (371)
T PRK09240 99 -IKR-KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA---KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELG 173 (371)
T ss_pred -Ccc-ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC---CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcC
Confidence 223 56999999999999999999999999865432 1467899999999986533455566789999999999999
Q ss_pred cCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCC----CC
Q 016605 195 LTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PE 265 (386)
Q Consensus 195 ~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~ 265 (386)
++++++++||+ ++.|+.+++ +|++++++++++.++++|+. +++++|+|+||+.+|+.+++..+++|++. ..
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~ 253 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEY 253 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCce
Confidence 99999999999 999999974 67999999999999999996 99999999999999999999988888521 24
Q ss_pred eEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc-ccChh---HHHhhhhcCccccccCCccccC
Q 016605 266 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV-RFSMP---EQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 266 ~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~-~~~~~---~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
+|+|+.|+|.+| ++.+.++++.++++++++++|+++|+..|++++|+. .++.. .+...+.+| |..++|. |+|+
T Consensus 254 sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag-~~~~~G~-y~~~ 330 (371)
T PRK09240 254 SISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG-SSTQPGG-YADD 330 (371)
T ss_pred eeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC-ccCCCCC-cCCC
Confidence 789999999999 999888999999999999999999999999999984 45432 235667776 8888887 7776
Q ss_pred ----------CCCChhHHHHHHHHcCCCcCCCCC
Q 016605 342 ----------PNNDFDADQLMFKVLGLTPKAPSF 365 (386)
Q Consensus 342 ----------~~~~~~~~~~~i~~~G~~p~~~~~ 365 (386)
++++.+++++||+++||.|+.-|-
T Consensus 331 ~~~~~qf~~~~~r~~~~~~~~i~~~g~~~~~~~~ 364 (371)
T PRK09240 331 HKELEQFEISDDRSVEEVAAALRAKGLQPVWKDW 364 (371)
T ss_pred CCCcCCccCCCCCCHHHHHHHHHHCCCeeccchh
Confidence 699999999999999999987654
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=329.51 Aligned_cols=294 Identities=51% Similarity=0.882 Sum_probs=252.5
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCc
Q 016605 61 IYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST 140 (386)
Q Consensus 61 l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~ 140 (386)
||+.|..+++..|++.+++.++|+.+.+++++++.|++|+++|.||+++..+..+...++.+++++|+++++.+.+.|++
T Consensus 1 ~~~~~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~ 80 (296)
T TIGR00433 1 LFETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGAT 80 (296)
T ss_pred CccCcHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCC
Confidence 45567888999999999988889999999999987999999999999876532223345568999999999999889999
Q ss_pred EEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHH
Q 016605 141 RFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDE 220 (386)
Q Consensus 141 ~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~ 220 (386)
.+++++++..+.. ....+.+.++.+.+++.++.++++.|.+++|.++.|+++|++.+.+++|+.+++|+++++++++++
T Consensus 81 ~~~l~~~g~~~~~-~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~ 159 (296)
T TIGR00433 81 RFCLVASGRGPKD-REFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDD 159 (296)
T ss_pred EEEEEEecCCCCh-HHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHH
Confidence 9877554333222 122344555555555678888888899999999999999999999999933899999998899999
Q ss_pred HHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 221 ~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
++++++.++++|+.+++++|+|++|+.+++.++++++++++ ++.+.++.|+|.|||++.+.++++.++++++++.+|+
T Consensus 160 ~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~ 237 (296)
T TIGR00433 160 RVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARI 237 (296)
T ss_pred HHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 8899999999999999999888999999999999999
Q ss_pred hCCCcceeecCcc-cccChhHHHhhhhcCccccccCCccccCCCCChh-HHHHHHHHcCC
Q 016605 301 VMPKAMVRLSAGR-VRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFD-ADQLMFKVLGL 358 (386)
Q Consensus 301 ~lp~~~i~i~~g~-~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~-~~~~~i~~~G~ 358 (386)
++|+..+++.+++ ..++...+..++.+|||.++.|+ |+|+.|.... +|..||+++||
T Consensus 238 ~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~-~~~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 238 IMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGD-YLTTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred HCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcC-cccCCCCCCcHHHHHHHHHcCC
Confidence 9999888888776 46665555569999999999998 9999999999 99999999997
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=357.93 Aligned_cols=328 Identities=19% Similarity=0.208 Sum_probs=277.6
Q ss_pred ccchHHHHHHHHhhcCCCCCCCHHHHHHhcCC--ChHHHHHHHHHHHHhhcCCC-----eeEEEE--eeeecCCCCCcCC
Q 016605 33 SASAAAIEAERTIREGPRHDWSKDDIKSIYDS--PVLDLLFHGAQVHRHAHNFR-----EVQQCT--LLSIKTGGCSEDC 103 (386)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~--~~~~~l~~aa~~~r~~~~g~-----~v~~~~--~i~i~t~~C~~~C 103 (386)
..+.+.++++|+++ |++||.+|++.||+. ++++.+..+|+.+|++++|+ .|+++. ++++ |+.|..+|
T Consensus 10 ~~~~~~~~l~k~~~---g~~ls~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~~G~~~~~~~Vty~~n~~In~-Tn~C~~~C 85 (843)
T PRK09234 10 TASAMRRALRRARD---GVTLDVDEAAVLLTARGDDLADLCASAARVRDAGLGAAGRPGVVTYSRKVFIPL-TRLCRDRC 85 (843)
T ss_pred CHHHHHHHHHHHHc---CCCCCHHHHHHHhcCCCccHHHHHHHHHHHHHHHcCCcccCceEEEEeEEEecC-CCCCCCCC
Confidence 34557889999999 899999999999853 45566677777777777798 899885 4555 99999999
Q ss_pred CCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------ChhhHHHHHHHHHHHhh-
Q 016605 104 SYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTNFNQILEYVKDIRD- 170 (386)
Q Consensus 104 ~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g------------e~~~~~~l~~~i~~ik~- 170 (386)
.||+|+...+ . ..++.+++|||++.++++.+.|++++++++|..+... ....++++.++++.+++
T Consensus 86 ~YCaF~~~~~-~-~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~ 163 (843)
T PRK09234 86 HYCTFATVPG-K-LEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE 163 (843)
T ss_pred CcCCCccCCC-C-CccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999986542 2 3445699999999999999999999999988765421 11246899999999985
Q ss_pred cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHh------hhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYS------KIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 171 ~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~------~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
.++..+++.|.++.+.++.|+++|++ +.+.+|+. ++.|. .+++++.+++++++++.++++|+++++++|+|+
T Consensus 164 ~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~Gi 242 (843)
T PRK09234 164 TGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGI 242 (843)
T ss_pred cCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 68888899999999999999999997 78999997 77764 455777899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC---CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhH
Q 016605 244 GEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPE 320 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~---~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~ 320 (386)
|||.+|+.+++..+++++. +++.+.++.|.|.+||+|.+.+.++.+++++++|++|+++|+ .++|+++|...+...
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~-~~~Iqa~~~l~g~~~ 321 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGP-KMRIQAPPNLVSGDE 321 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-CceeeCccccCCHHH
Confidence 9999999999999999963 478899999999999999998999999999999999999987 479999999988888
Q ss_pred HHhhhhcCcccc-----ccCCcccc--CCCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 321 QALCFLAGANSI-----FTGEKLLT--TPNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 321 ~~~~l~~Gan~~-----~~g~~~~t--~~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
.+.+|.+||||+ ++++ ..+ ...++.+++.++|+++||+|++|++.|+.
T Consensus 322 ~~~~L~~GanD~GG~~~~~~d-~~~p~~~~~~~~~l~~~~~~aG~~~~eR~t~Y~~ 376 (843)
T PRK09234 322 CAALLGAGIDDWGGVSPLTPD-HVNPERPWPQLDELAAVTAEAGFTLVERLTAYPE 376 (843)
T ss_pred HHHHHhcCCCcccchhhhHhh-ccCccCCCCCHHHHHHHHHHcCCCcccccCccHh
Confidence 899999999998 1222 222 23468999999999999999999999965
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=331.88 Aligned_cols=314 Identities=19% Similarity=0.250 Sum_probs=264.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHhcCCC---hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCC
Q 016605 38 AIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDT 114 (386)
Q Consensus 38 ~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~ 114 (386)
+.-++++++ |+++|++|++.|++.+ +.+.+..+|+.+|++++|+.++++.++++ |+.|+++|.||+++....
T Consensus 23 ~~~~~~~l~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~l~~~i~~-Tn~C~~~C~yC~~s~~~~- 97 (366)
T TIGR02351 23 AADVERALN---KRHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRFGNTISLFTPLYL-SNYCSNKCVYCGFSMSNK- 97 (366)
T ss_pred HHHHHHHHh---CCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHcCCEEEEEeeeeE-CccccCCCCcCCCCCCCC-
Confidence 445789999 8999999999999754 46667777777788888999999999997 999999999999986432
Q ss_pred CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhc
Q 016605 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 115 ~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG 194 (386)
.++ +.++.|||.+.++.+.+.|+++|+++||..+.. ..++++.++++.+++....+.+..+.++.+.++.|+++|
T Consensus 98 -~~~-~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~---~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aG 172 (366)
T TIGR02351 98 -IKR-KKLNEEEIEREIEAIKKSGFKEILLVTGESEKA---AGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAG 172 (366)
T ss_pred -Ccc-CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC---CCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcC
Confidence 333 458999999999999999999999997654322 457899999999986532222334568999999999999
Q ss_pred cCeeecccCch-HHHHhhhC---CCCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCC----CC
Q 016605 195 LTAYNHNLDTS-REFYSKII---TTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PE 265 (386)
Q Consensus 195 ~~~v~i~le~~-~~~~~~i~---~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~ 265 (386)
++++++++||+ ++.|++++ ++|++++++++++.++++|+. +++++|+|+|++.+|..+++..++.|+++ ..
T Consensus 173 v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~ 252 (366)
T TIGR02351 173 LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEI 252 (366)
T ss_pred CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999 99999998 577999999999999999998 99999999999999999988888877531 26
Q ss_pred eEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc-ccCh---hHHHhhhhcCccccccCCccccC
Q 016605 266 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV-RFSM---PEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 266 ~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~-~~~~---~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
+|+++.++|.+| ++....+++..+++++++.+|+++|+..|++++|+. .++. +.+...+.+ +|..++|. |+|+
T Consensus 253 sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a-~~~~~~G~-y~~~ 329 (366)
T TIGR02351 253 SISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSA-GSSTEPGG-YSSE 329 (366)
T ss_pred cccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeecc-CcccCCCC-cCCC
Confidence 899999999999 998888899999999999999999999999999984 4442 333445666 77777777 7777
Q ss_pred CC----------CChhHHHHHHHHcCCCcCCCC
Q 016605 342 PN----------NDFDADQLMFKVLGLTPKAPS 364 (386)
Q Consensus 342 ~~----------~~~~~~~~~i~~~G~~p~~~~ 364 (386)
.+ ++++++++||+++||.|+.-|
T Consensus 330 ~~~~~qf~~~d~r~~~~~~~~i~~~g~~~~~~~ 362 (366)
T TIGR02351 330 KKGLEQFEISDERSVAEVEEDLRSKGLQPVWKD 362 (366)
T ss_pred CCCcCcccCCCCCCHHHHHHHHHHCCCeecccc
Confidence 66 999999999999999998654
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=324.05 Aligned_cols=274 Identities=22% Similarity=0.367 Sum_probs=242.3
Q ss_pred CCHHHHHHhcCCChH---HHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHH
Q 016605 53 WSKDDIKSIYDSPVL---DLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQ 129 (386)
Q Consensus 53 ls~ee~~~l~~~~~~---~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~ 129 (386)
+|++|++.||+.++. +.+..+|+.+|++++|+++++++++++ |++|+++|.||+++... ....+++ +++++|++
T Consensus 1 ~t~~e~~~ll~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~~i~~-s~gC~~~C~fC~~~~~~-~~~~r~~-ls~eei~~ 77 (323)
T PRK07094 1 LTRDEILELLSNDDEEELKYLFKAADEVRKKYVGDEVHLRGLIEF-SNYCRNNCLYCGLRRDN-KNIERYR-LSPEEILE 77 (323)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEE-CCCCCCCCEeCCcccCC-CCCcCcC-CCHHHHHH
Confidence 689999999986532 237777777787888999999999999 99999999999987532 2223444 79999999
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HH
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-RE 207 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~ 207 (386)
.++.+.+.|++.|+++||..+. ...+++.++++.+++ .++.+.++.|..+++.++.|+++|++++.+++|+. ++
T Consensus 78 ~~~~~~~~g~~~i~l~gG~~~~----~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~ 153 (323)
T PRK07094 78 CAKKAYELGYRTIVLQSGEDPY----YTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKE 153 (323)
T ss_pred HHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHH
Confidence 9999999999999998764322 245789999999987 57777788899999999999999999999999999 99
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 286 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~ 286 (386)
+++.+++++++++++++++.++++|+.+++++|+|+ |||.+++.++++++++++ ++.++++.|+|.||||+.+.+++
T Consensus 154 ~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~ 231 (323)
T PRK07094 154 LYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGG 231 (323)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCC
Confidence 999999999999999999999999999999999999 999999999999999996 88999999999999999998889
Q ss_pred CHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccC
Q 016605 287 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 287 s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
+.++.+++++++|+++|+..++..++|..+++..+..+|.+|||++++.
T Consensus 232 ~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~~ 280 (323)
T PRK07094 232 SLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPN 280 (323)
T ss_pred CHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecCC
Confidence 9999999999999999998888888998888888899999999999643
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=321.01 Aligned_cols=324 Identities=18% Similarity=0.219 Sum_probs=258.6
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHH-hhcCCCeeEEEEeeeec-CCCCCcCCCCCCCCCCCCC
Q 016605 37 AAIEAERTIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHR-HAHNFREVQQCTLLSIK-TGGCSEDCSYCPQSSRYDT 114 (386)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r-~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~ 114 (386)
.+.+++++.+ +++++.+|++.||+..+...+...|+..| ....++.++++.+++++ ||.|..+|.||+|+... .
T Consensus 8 ~~~~~e~a~~---~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~-~ 83 (370)
T COG1060 8 VDEIVEKALN---GERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKP-G 83 (370)
T ss_pred HHHHHHHHhc---cCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCC-C
Confidence 6789999999 99999999999998766665666665555 77778888888765554 99999999999999765 2
Q ss_pred CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcE------E---EEecCC
Q 016605 115 GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GME------V---CCTLGM 181 (386)
Q Consensus 115 ~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~------i---~~t~g~ 181 (386)
..++ +.+++|||.+.++++.+.|+++++|+||.+|.. .++++.++++.+|+. .+. + ....+.
T Consensus 84 ~~~~-y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~----~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~ 158 (370)
T COG1060 84 DPKA-YTLSPEEILEEVREAVKRGITEVLIVGGEHPEL----SLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGL 158 (370)
T ss_pred Cccc-cccCHHHHHHHHHHHHHcCCeEEEEecCcCCCc----chHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCC
Confidence 2233 459999999999999999999999999876643 345677777777642 111 1 112344
Q ss_pred CCHHHHHHHHHhccCeeecccCch--HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHh
Q 016605 182 LEKHQAIELKKAGLTAYNHNLDTS--REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLA 258 (386)
Q Consensus 182 l~~e~l~~Lk~aG~~~v~i~le~~--~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~ 258 (386)
..+|.+++||++|++.+..+-... +++.+.++++ .+++.|+++++.|+++||+.++++++|++|+.+|+.+++..++
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir 238 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIR 238 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHHH
Confidence 567779999999999999866555 5666666654 4999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEeeeeeeecC-----CC-CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 259 TLPTHPESVPINALLAVK-----GT-PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 259 ~l~~~~~~v~~~~f~P~~-----gT-~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
++| -...+|+.|+|.+ ++ ++...+..+..+++++++++|++++..+-.+.++|+..+....+.++.+||||+
T Consensus 239 ~lQ--~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ 316 (370)
T COG1060 239 DLQ--DETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDL 316 (370)
T ss_pred HHH--HHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCcccccchHHHHHHHHhCcccC
Confidence 997 3444566666544 44 555667789999999999999999986666889999998888899999999998
Q ss_pred c---cCCcccc------CCCCChhHHHHHHHHcCCCcCCCCCcccccc
Q 016605 333 F---TGEKLLT------TPNNDFDADQLMFKVLGLTPKAPSFHEGEAN 371 (386)
Q Consensus 333 ~---~g~~~~t------~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~ 371 (386)
- .+|.+.. ...++.+|+.++|+++||+|++||+.|+...
T Consensus 317 ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p~~Rdt~Y~~~~ 364 (370)
T COG1060 317 GGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAGRIPVERDTLYRILY 364 (370)
T ss_pred cCCCcccccccccccccCCCCCHHHHHHHHHHcCCCeeeeccccceee
Confidence 2 2232222 2468999999999999999999999998764
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=313.09 Aligned_cols=268 Identities=19% Similarity=0.289 Sum_probs=226.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
+++ |++|+.+|.||+++..+.. . +.+.+++|+|++.++.+.+.|+++|+|++|..+. ...+++.++++.+++.
T Consensus 9 i~~-T~~C~~~C~FC~~~~~~~~-~-~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~----~~~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 9 INF-TNICVGKCKFCAFRAREKD-K-DAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQ----LDIEYYEELFRAIKQE 81 (309)
T ss_pred ecC-ccccccCCccCCCccCCCC-C-CcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHHHHHH
Confidence 455 9999999999999864321 2 2345999999999999999999999999765432 3467888899998865
Q ss_pred C--cEEE-----------EecCCCCHHHHHHHHHhccCeee-cccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCee
Q 016605 172 G--MEVC-----------CTLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINV 235 (386)
Q Consensus 172 g--~~i~-----------~t~g~l~~e~l~~Lk~aG~~~v~-i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v 235 (386)
+ +.++ .+.|..+++.+++|+++|+++++ +++|++ +++++.+++++ ++++++++++.++++|+++
T Consensus 82 ~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~ 161 (309)
T TIGR00423 82 FPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPT 161 (309)
T ss_pred CCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3 3332 14566789999999999999997 599999 89999998755 9999999999999999999
Q ss_pred eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC----CCC-CCCC--CCCCHHHHHHHHHHHHHhCCCccee
Q 016605 236 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTP-LQDQ--KPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 236 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~----gT~-l~~~--~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
++++|+|++||.+|+.+++.++++++ ++..+|+.|+|.| +|| ++.. ++++..+.++++|++|+++| .+.+
T Consensus 162 ~s~~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp-~~~~ 238 (309)
T TIGR00423 162 TATMMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN-NIRN 238 (309)
T ss_pred eeeEEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC-CCcc
Confidence 99999999999999999999999996 7888898899854 888 7654 77899999999999999999 4778
Q ss_pred ecCcccccChhHHHhhhhcCcccc---ccCCccccC------CCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 309 LSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTT------PNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 309 i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~------~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
++++|..++++.++.+|.+|||++ +.++.+... ..++.+++..+|+++|++|++|++.|++
T Consensus 239 i~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~~~y~~ 308 (309)
T TIGR00423 239 IQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRDTLYNI 308 (309)
T ss_pred ceecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecCCCCCc
Confidence 999999999887899999999998 334433322 2578999999999999999999999986
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=316.46 Aligned_cols=324 Identities=19% Similarity=0.281 Sum_probs=270.4
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHhcCCC---hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCC
Q 016605 34 ASAAAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSS 110 (386)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~ 110 (386)
...+.++++|+++ +++||.+|++.||+.+ .++.|..+|+.+|++++|+++.+++++++ ||.|+.+|.||+|+.
T Consensus 30 ~~~v~~il~Kal~---~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyi-SN~C~n~C~YCgfs~ 105 (469)
T PRK09613 30 KDEIREILEKAKE---KKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYI-SNYCVNNCVYCGFRR 105 (469)
T ss_pred HHHHHHHHHHHHc---CCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccc-cCCCCCCCccCCCcc
Confidence 3447889999999 8999999999999753 56778888888898889999999999998 999999999999986
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----C-c-EEEEecCCCCH
Q 016605 111 RYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----G-M-EVCCTLGMLEK 184 (386)
Q Consensus 111 ~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g-~-~i~~t~g~l~~ 184 (386)
.. ....++ .+++|||++.++.+.+.|++++++++|..++ ...++++.++++.+++. | + .+.++.|.++.
T Consensus 106 ~n-~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~---~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~ 180 (469)
T PRK09613 106 SN-KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAGEDPP---NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTV 180 (469)
T ss_pred CC-CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC---CCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCH
Confidence 53 334444 5899999999999999999999999876543 24578899999998863 2 2 47788899999
Q ss_pred HHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 185 HQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+.+++|+++|++++.+..||. +++|+++++ +++|+.++++++.+.++|+. |++++|+|++++.+|..+++..++.
T Consensus 181 eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~ 260 (469)
T PRK09613 181 ENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEH 260 (469)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999 899999876 57999999999999999998 9999999999999999999888887
Q ss_pred C----CCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccccc
Q 016605 260 L----PTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFT 334 (386)
Q Consensus 260 l----~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~ 334 (386)
| +.++++|+|..|.|.+|||+.+.+ +++.++++++++++|+++|...|.+++. .. +...-..+..|++.+..
T Consensus 261 L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStR-E~--~~~r~~~~~~gvt~~sa 337 (469)
T PRK09613 261 LEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTR-ES--AELRREVLELGVSQISA 337 (469)
T ss_pred HHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecC-CC--HHHHHHHHhhcceeecc
Confidence 7 334788999999999999997654 5899999999999999999998888862 21 23334445556655521
Q ss_pred C-----------------CccccCCCCChhHHHHHHHHcCCCcCCCCCcccc
Q 016605 335 G-----------------EKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGE 369 (386)
Q Consensus 335 g-----------------~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~~~~~ 369 (386)
| ++|...+.++++|++++|.+.||.|+.=+.-|+.
T Consensus 338 gs~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p~~ctacyr~ 389 (469)
T PRK09613 338 GSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIPSFCTACYRL 389 (469)
T ss_pred cccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeEEEeeccccC
Confidence 1 2355568899999999999999999876555543
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=310.60 Aligned_cols=274 Identities=20% Similarity=0.292 Sum_probs=225.5
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC------------Chhh
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTN 157 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g------------e~~~ 157 (386)
..+++ ||+|+.+|.||+|+... +...++.+++|+|++.++.+.+.|++++++++|.++... -...
T Consensus 6 ~~i~~-tn~C~~~C~fCaf~~~~--g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~ 82 (322)
T TIGR03550 6 VFIPL-TRLCRNRCGYCTFRRPP--GELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDST 82 (322)
T ss_pred EEecc-ccCcCCCCccCCccccC--CCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccH
Confidence 34677 99999999999998653 333455699999999999999999999999887655321 0012
Q ss_pred HHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhh----hCCCCCHHHHHHHHHHHHHc
Q 016605 158 FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSK----IITTRSYDERLETLKHVREA 231 (386)
Q Consensus 158 ~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~----i~~~~s~~~~l~~i~~a~~~ 231 (386)
.+++.++++.+++ .++..+++.|.++++.++.|+++|++ +.+++|++ +.+++. +++++++++++++++.++++
T Consensus 83 ~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~ 161 (322)
T TIGR03550 83 LEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRL 161 (322)
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 4678888888874 37777889999999999999999986 58889998 665543 34456789999999999999
Q ss_pred CCeeeEeEEeecCCCHHHHHHHHHHHhcCCC---CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccee
Q 016605 232 GINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 232 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
|+.+++++|+|+|||.+|+.+++.++++++. ++..+.+.+|.|.||||+++.++++..+.++++|++|+++|+ ..+
T Consensus 162 Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~-~~~ 240 (322)
T TIGR03550 162 KIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP-DIS 240 (322)
T ss_pred CCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC-CCe
Confidence 9999999999999999999999999999962 245677889999999999988889999999999999999976 467
Q ss_pred ecCcccccChhHHHhhhhcCcccc-----ccCCccccCCC--CChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 309 LSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTPN--NDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 309 i~~g~~~~~~~~~~~~l~~Gan~~-----~~g~~~~t~~~--~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
|+++| .+....++.+|.+|||++ +.++ ..++.+ .+.+++.+||+++||+|++||+.|+.-
T Consensus 241 I~~~~-~l~~~~~~~~L~~Gand~~gt~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~p~~R~t~y~~~ 307 (322)
T TIGR03550 241 IQVPP-NLNREDYRLLLDAGIDDWGGVSPVTPD-HVNPEAPWPEIDELARATEEAGFTLKERLPVYPEY 307 (322)
T ss_pred eecCC-ccChHHHHHHHhcCCccccCcccCchh-hcCCCCCCCCHHHHHHHHHHcCCCcccccCccHhh
Confidence 88888 555445799999999995 3455 444333 689999999999999999999999654
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=293.07 Aligned_cols=280 Identities=21% Similarity=0.332 Sum_probs=226.8
Q ss_pred CCCeeEEEEe--eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh---
Q 016605 82 NFREVQQCTL--LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--- 156 (386)
Q Consensus 82 ~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~--- 156 (386)
.|+.|++... +++ |++|+.+|.||+++... + .++.+++|+|++.++++.+.|+++++++||..+...-+.
T Consensus 4 ~~~~vt~~~~~~i~~-Tn~C~~~C~fC~~~~~~--~--~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~ 78 (336)
T PRK06245 4 MSKIVTYSRNVFIPL-TYECRNRCGYCTFRRDP--G--QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKE 78 (336)
T ss_pred CCCeeEeecceeeec-cccccCCCccCCCcCCC--C--ccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhh
Confidence 4788888765 455 99999999999987542 2 223699999999999999999999999988654322000
Q ss_pred -----hHHHHHHHHHHHh----hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhh---CCCCCHHHHHH
Q 016605 157 -----NFNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI---ITTRSYDERLE 223 (386)
Q Consensus 157 -----~~~~l~~~i~~ik----~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i---~~~~s~~~~l~ 223 (386)
.++.+.+.++++. +.++..+++.+.++++.++.|+++|+. +.+.+|+. +.+++.+ +++++++++++
T Consensus 79 ~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~ 157 (336)
T PRK06245 79 QLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLE 157 (336)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHH
Confidence 0234555554443 345556778899999999999999864 57788998 7777544 56778999999
Q ss_pred HHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCC---CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 224 TLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 224 ~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+++.+++.|+.+++++|+|+|||.+|+.+++.++++++. +++.+.++.|+|.++|++...+.++.++++++++++|+
T Consensus 158 ~i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 158 TIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred HHHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998863 25778899999999999987778899999999999999
Q ss_pred hCCCcceeecCcccccChhHHHhhhhcCcccc-----ccCCccccCC--CCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTP--NNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 301 ~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~-----~~g~~~~t~~--~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
++|+ .++++.++ +++...++.+|.+|||++ ..++ ++++. .++.+++.++|+++|++|++|++.|+..
T Consensus 238 ~l~~-~i~i~~~~-~~~~~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~r~~~y~~~ 311 (336)
T PRK06245 238 ILPP-DISIQVPP-NLNRDTGLLLLDAGADDLGGISPVTKD-YVNPEYPWPDIEELREILEEAGWPLKERLPVYPKY 311 (336)
T ss_pred HCCC-CceEecCC-ccchHHHHHHHhcCCccccCCccCCCc-eeCCCCCCCCHHHHHHHHHHcCCCcccccCcchhh
Confidence 9987 35677765 677777788999999999 3344 55543 5789999999999999999999999875
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=284.31 Aligned_cols=273 Identities=17% Similarity=0.198 Sum_probs=225.2
Q ss_pred hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCC--cCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHHHHcCCcEE
Q 016605 66 VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCS--EDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRF 142 (386)
Q Consensus 66 ~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~~~~G~~~v 142 (386)
+...+..+|+..|++++|++|++++++++ |++|+ .+|.||+++..... ..+.++.+++|+|+++++.+.+.|++.+
T Consensus 5 ~~~~L~~~A~~ir~~~fG~~v~l~~~l~~-S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~ 83 (350)
T PRK06267 5 EILENSIKAFKLTEKHHGNIVSLERALFL-GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLE 83 (350)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeee-cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 44556667777777778999999999998 99999 89999999864321 1123446899999999999999999877
Q ss_pred EEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHH
Q 016605 143 CMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDE 220 (386)
Q Consensus 143 ~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~ 220 (386)
+++||.. ...+++.++++.+++. +..++++.|.++.+.+..++.+|+ .+++|+. +++|+.+++++++++
T Consensus 84 ~lsgG~~------~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed 154 (350)
T PRK06267 84 FISGGYG------YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDK 154 (350)
T ss_pred EEecCCC------CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHH
Confidence 6766532 2234455555555433 345677888888888877777775 4689999 899999999999999
Q ss_pred HHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 221 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 221 ~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
++++++.++++|+.+++++|+|+||+.+|+.++++++++++ ++.+.++.|+|.|||++.+.++++.++++++++++|+
T Consensus 155 ~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 155 IKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred HHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 8899999999999999999899999999999999999
Q ss_pred hCCCcceeecCcccccChhHHHhhhhcCcccc----ccCCccccCCCCChhHHHHHH
Q 016605 301 VMPKAMVRLSAGRVRFSMPEQALCFLAGANSI----FTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 301 ~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~----~~g~~~~t~~~~~~~~~~~~i 353 (386)
++|+..+ +.++|.....+.+. .+.+|||.+ +.|. |+|+.|.++++++++-
T Consensus 233 ~lP~~~I-~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~-ylt~~g~~~~~~~~~~ 286 (350)
T PRK06267 233 NFPKIKI-ITGTWVDKLTNIGP-LIMSGSNVITKFPLFSM-YGTKEGKRVENEIRWT 286 (350)
T ss_pred HCCCCCc-chhhHhHhcchhhH-HhhcCcceeeccchhcc-CcccCCCCHHHHHHHh
Confidence 9999777 77778543334444 777999999 6777 9999999999998776
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=198.65 Aligned_cols=232 Identities=20% Similarity=0.276 Sum_probs=177.4
Q ss_pred CHHHHHHhcCCChHHHHHHHHHHHHh--hcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHH
Q 016605 54 SKDDIKSIYDSPVLDLLFHGAQVHRH--AHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAA 131 (386)
Q Consensus 54 s~ee~~~l~~~~~~~~l~~aa~~~r~--~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~ 131 (386)
+..|++.||+..++..+...|...+. .+.++.+.+ +.+ |++|+.+|.||.++... + +.+++++|++++
T Consensus 20 ~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~~~~f---i~i-s~GC~~~C~FC~i~~~r--~----~s~~~eeI~~ea 89 (289)
T PRK05481 20 EYTEIKKLLRELGLHTVCEEASCPNIGECWSRGTATF---MIL-GDICTRRCPFCDVATGR--P----LPLDPDEPERVA 89 (289)
T ss_pred hHHHHHHHHHhCChHHHHHhhCCCcchhccCCCeEEE---EEe-cccccCCCCCceeCCCC--C----CCCCHHHHHHHH
Confidence 46788899987666666777765555 445665554 335 99999999999987531 1 338999999999
Q ss_pred HHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCchHH
Q 016605 132 QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 132 ~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
+++.+.|++++.++|+..+... ....+.+.++++.+++. ++. ++........+.+..|+++|.+.+.+.+++.++
T Consensus 90 ~~l~~~G~kEI~L~gg~~~d~~-~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~ 168 (289)
T PRK05481 90 EAVARMGLKYVVITSVDRDDLP-DGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPR 168 (289)
T ss_pred HHHHHCCCCEEEEEEeeCCCcc-cccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChHH
Confidence 9999999999999987643211 11346788888888753 333 333333345688999999999999999999888
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC-CCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQK 284 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT-~l~~~~ 284 (386)
+++.++++++++++++.++.++++ |+.+++++|+|+|||++|+.++++++++++ ++.+++..|.| |.. .+.-..
T Consensus 169 vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~-pa~k~~~v~~ 245 (289)
T PRK05481 169 LYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ-PSRKHLPVER 245 (289)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC-CccccCCCCC
Confidence 999999999999999999999999 999999999999999999999999999996 89999999999 544 332122
Q ss_pred CCCHHHHHHHHHHHH
Q 016605 285 PVEIWEMIRMIATAR 299 (386)
Q Consensus 285 ~~s~~e~~~~~a~~R 299 (386)
....+...++..++.
T Consensus 246 ~~k~~r~~~l~~~~~ 260 (289)
T PRK05481 246 YVTPEEFDEYKEIAL 260 (289)
T ss_pred cCCHHHHHHHHHHHH
Confidence 344455444444444
|
|
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=197.93 Aligned_cols=231 Identities=18% Similarity=0.259 Sum_probs=176.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH-hhcC-CCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHH
Q 016605 55 KDDIKSIYDSPVLDLLFHGAQVHR-HAHN-FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQ 132 (386)
Q Consensus 55 ~ee~~~l~~~~~~~~l~~aa~~~r-~~~~-g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~ 132 (386)
-.+++.||+...+..+...|...+ ..++ ++.+++ +.+ |++|+.+|.||.++.. . . ..++++++++.++
T Consensus 28 ~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~tf---v~i-s~gC~~~C~FCa~~~g----~-~-~~~~~eei~~~a~ 97 (290)
T PRK12928 28 LETVQRLVKQRRLHTICEEARCPNRGECYAQGTATF---LIM-GSICTRRCAFCQVDKG----R-P-MPLDPDEPERVAE 97 (290)
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCcccccCCCCEEEE---EEe-cccccCcCCCCCccCC----C-C-CCCCHHHHHHHHH
Confidence 567888887765555555554333 3333 555554 334 9999999999998742 1 2 2489999999999
Q ss_pred HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEE-EecCCC--CHHHHHHHHHhccCeeecccCchHH
Q 016605 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVC-CTLGML--EKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 133 ~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~-~t~g~l--~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
++.+.|+++++++|+..+... +...+++.++++.+++. ++.+. .+...+ ..+.++.|+++|.+.+++++|+.++
T Consensus 98 ~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~ 176 (290)
T PRK12928 98 AVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPR 176 (290)
T ss_pred HHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHH
Confidence 999999999999887643221 12346788888888764 23332 233333 5788999999999999999998899
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcC--CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC--CCCCCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQDQ 283 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~--gT~l~~~ 283 (386)
+++.++++.+++++++.++.+++.| +.+++++|+|+|||.+|+.++++++++++ ++.+.+.+|.+-. ..|..
T Consensus 177 vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~-- 252 (290)
T PRK12928 177 LQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQ-- 252 (290)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCcee--
Confidence 9999999999999999999999999 99999999999999999999999999997 8999998887522 33333
Q ss_pred CCCCHHHHHHHHHHHHH
Q 016605 284 KPVEIWEMIRMIATARI 300 (386)
Q Consensus 284 ~~~s~~e~~~~~a~~R~ 300 (386)
...+++++..+-.++..
T Consensus 253 ~~~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 253 RYWTPEEFEALGQIARE 269 (290)
T ss_pred eccCHHHHHHHHHHHHH
Confidence 34567776666555554
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=206.17 Aligned_cols=268 Identities=20% Similarity=0.200 Sum_probs=189.8
Q ss_pred cccccccccccCCccchHHHHHHHHhhcCCCCCCCHHHHHHhcC------CChHHHHHHHHHHHHhhcC-CCeeEEEEee
Q 016605 20 KKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKDDIKSIYD------SPVLDLLFHGAQVHRHAHN-FREVQQCTLL 92 (386)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~------~~~~~~l~~aa~~~r~~~~-g~~v~~~~~i 92 (386)
-||.. -++..+ .+|+.+.+. +++|.+|+...|. .+..+++...+...+..+. ...-.+...+
T Consensus 100 ~pwg~--ltgirp-----~k~~~~~~~----~g~~~~~~~~~~~~~y~~~~~k~~l~~~~~~~~~~~~~~~~~~~~sLYi 168 (488)
T PRK08207 100 LPWGI--LTGIRP-----TKILHKLLD----EGLSKEEIHKELKEEYLISEEKAKLLLEIAKRELSFLLYRDKNEVSIYI 168 (488)
T ss_pred CCCcc--eeeeCh-----HHHHHHHHH----cCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccCCCCceEEEE
Confidence 35643 455566 678888877 5789999888764 2456778888877676653 1222233334
Q ss_pred eecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 93 SIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 93 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
+ -++||.+|.||+|+.....+.......-.+.+.++++.+.+ .++..++++|| +|+...+..++.+++.+.
T Consensus 169 h--IPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGG-TPt~L~~~~L~~Ll~~i~ 245 (488)
T PRK08207 169 G--IPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGG-TPTSLTAEELERLLEEIY 245 (488)
T ss_pred e--cCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCC-CccCCCHHHHHHHHHHHH
Confidence 4 47999999999997542111111000113444444443321 13556667654 555443444445555444
Q ss_pred HHh-h-cCc-EEEE---ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eeeEe
Q 016605 167 DIR-D-MGM-EVCC---TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSG 238 (386)
Q Consensus 167 ~ik-~-~g~-~i~~---t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~~~ 238 (386)
... . .++ ++.+ ++..++++.++.|+++|++++++++|++ +++++.+++.|++++++++++.++++|+ .++++
T Consensus 246 ~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~D 325 (488)
T PRK08207 246 ENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMD 325 (488)
T ss_pred HhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 321 1 133 4444 3457999999999999999999999999 8999999999999999999999999999 69999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHHHHhCC
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATARIVMP 303 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~----~~~~s~~e~~~~~a~~R~~lp 303 (386)
+|+|+ |||.+++.++++++.+++ ++++.++.+.|.|||++.. ...++.++..+++..++..+.
T Consensus 326 LI~GLPgEt~ed~~~tl~~l~~L~--pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~ 393 (488)
T PRK08207 326 LIIGLPGEGLEEVKHTLEEIEKLN--PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAK 393 (488)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhcC--cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999996 9999999999999999863 345677888888877765553
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-23 Score=192.56 Aligned_cols=197 Identities=21% Similarity=0.302 Sum_probs=162.2
Q ss_pred cCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--C
Q 016605 95 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 172 (386)
Q Consensus 95 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g 172 (386)
..+.|..+|.||+++... . ...++++|+.+.++.+.+.|++.++++++..+.. .+...+.+.+.|+.|++. +
T Consensus 155 lG~~CTr~C~FCaqstg~----~-p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~p~ 228 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSR----K-PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESNPE 228 (398)
T ss_pred cCCCCCCCCCCCCCCCCC----C-CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccCCC
Confidence 388999999999997432 1 2448999999999999999998777777765432 235678999999999964 5
Q ss_pred cEEEEecCCC--CHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHHHHHHHHHHHc---CCeeeEeEEeecCCC
Q 016605 173 MEVCCTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA---GINVCSGGIIGLGEA 246 (386)
Q Consensus 173 ~~i~~t~g~l--~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~l~~i~~a~~~---Gi~v~~~~i~Glget 246 (386)
+.+++..|.+ +++.++.|+++|++.+++++||.+++|+.|+. .++|++.+++|+.++++ |+.+++++|+|+|||
T Consensus 229 ~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET 308 (398)
T PTZ00413 229 LLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGET 308 (398)
T ss_pred CeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCC
Confidence 7788888865 89999999999999999999999999999995 68999999999999987 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEeeeeee-ecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 247 EEDRVGLLHTLATLPTHPESVPINALL-AVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~~~~f~-P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
++|+.++++.+++++ ++.+.|..|. |.+ .-+.-..-.+++++..+-..+..
T Consensus 309 ~eEvie~m~dLrelG--VDivtIGQYL~Ps~-~h~~V~~yv~P~~F~~~~~~a~~ 360 (398)
T PTZ00413 309 EEEVRQTLRDLRTAG--VSAVTLGQYLQPTK-TRLKVSRYAHPKEFEMWEEEAMK 360 (398)
T ss_pred HHHHHHHHHHHHHcC--CcEEeeccccCCCc-ccCCceeccCHHHHHHHHHHHHH
Confidence 999999999999997 8999996554 543 22333344677877766665554
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=191.43 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=155.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
+.+ +++|+.+|.||.+.... + +.. .+++++.+.++.+.+.|+++++|+|++.+.+. +...+.+.++++.+++.
T Consensus 67 m~i-~~gC~~~C~FC~v~~~r--g--~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~~ 139 (302)
T TIGR00510 67 MIL-GDICTRRCPFCDVAHGR--N--PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIREK 139 (302)
T ss_pred Eec-CcCcCCCCCcCCccCCC--C--CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHhc
Confidence 445 99999999999986321 1 111 47899999999999999999999987654332 23456789999999864
Q ss_pred --CcE--EEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeecCC
Q 016605 172 --GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGE 245 (386)
Q Consensus 172 --g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glge 245 (386)
++. +++.....+.+.++.|+++|++.+++++|+.+++++.++++++++++++.++.++++ |+.+++++|+|+||
T Consensus 140 ~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGE 219 (302)
T TIGR00510 140 LPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGE 219 (302)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCC
Confidence 333 332221226889999999999999999999988999999999999999999999998 89999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeee-e-cCCCCCCCCCCCCHHHHHHHHH
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALL-A-VKGTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~-P-~~gT~l~~~~~~s~~e~~~~~a 296 (386)
|++|+.++++++++++ ++.+.+.+|. | .+.+|+.....|+.-+.++.++
T Consensus 220 Teee~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a 270 (302)
T TIGR00510 220 TNEEIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVA 270 (302)
T ss_pred CHHHHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHH
Confidence 9999999999999997 8899998876 4 2367776655544444444444
|
The family shows strong sequence conservation. |
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=198.87 Aligned_cols=245 Identities=12% Similarity=0.111 Sum_probs=176.1
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
.+++ ++|+.+|.||.|....... ...+.....+++..+++.+....++.++++|| +|+...+..++.+++.++..-
T Consensus 10 YiHi--PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGG-TPs~L~~~~l~~ll~~i~~~~ 86 (353)
T PRK05904 10 YIHI--PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGG-TPNCLNDQLLDILLSTIKPYV 86 (353)
T ss_pred EEEe--CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC-ccccCCHHHHHHHHHHHHHhc
Confidence 3454 7999999999987532111 11222223556665554433234667777654 565544545555555554432
Q ss_pred hcC--cEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-C
Q 016605 170 DMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 244 (386)
Q Consensus 170 ~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-g 244 (386)
... +.+.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.++..++++.++++|+. +++++|+|+ |
T Consensus 87 ~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 87 DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 112 335667788999999999999999999999999 99999999999999999999999999997 999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCc-ce--eec-----Ccccc
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKA-MV--RLS-----AGRVR 315 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~a~~R~~lp~~-~i--~i~-----~g~~~ 315 (386)
||.+++.++++++.+++ ++++.++.+.|.|||++.... .++.++..+++..++.++.+. +. .++ ++...
T Consensus 167 qt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~~ 244 (353)
T PRK05904 167 LKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYIS 244 (353)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCccc
Confidence 99999999999999996 899999999999999987542 356666677777777666432 22 222 12222
Q ss_pred cC-----hhHHHhhhhcCccccccCCcccc
Q 016605 316 FS-----MPEQALCFLAGANSIFTGEKLLT 340 (386)
Q Consensus 316 ~~-----~~~~~~~l~~Gan~~~~g~~~~t 340 (386)
.+ ....+.+|++||.+.+.+.++..
T Consensus 245 ~hn~~yw~~~~ylg~G~gA~s~~~~~r~~n 274 (353)
T PRK05904 245 KHNLAYWRTKDWAAIGWGAHGFENNIEYFF 274 (353)
T ss_pred cchHhHhCCCCEEEEcCCcCcccCCeEEEe
Confidence 11 13457889999999876655443
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=190.57 Aligned_cols=201 Identities=17% Similarity=0.268 Sum_probs=158.2
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
++.+ +++|+.+|.||+++... .+++ ..++|+.+.++.+.+.|++.++++++..+.. .+...+++.++++.+++
T Consensus 105 ~mil-g~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~ 177 (349)
T PLN02428 105 IMIL-GDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQ 177 (349)
T ss_pred EEEe-cCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHH
Confidence 3445 99999999999987432 1233 5688999999999999999999988754332 23567889999999986
Q ss_pred cC--cEEEE-ecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhC-CCCCHHHHHHHHHHHHHc--CCeeeEeEEeec
Q 016605 171 MG--MEVCC-TLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREA--GINVCSGGIIGL 243 (386)
Q Consensus 171 ~g--~~i~~-t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~-~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Gl 243 (386)
.. +.+.+ +++. .+++.++.|+++|++.+++++|+.+++++.|+ ++++++++++.++.+++. |+.+++++|+|+
T Consensus 178 ~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL 257 (349)
T PLN02428 178 LKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL 257 (349)
T ss_pred hCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec
Confidence 53 33333 3333 48999999999999999999998888999999 578999999999999999 999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
|||++|+.++++++++++ ++.+.|..|......-+.-...++++++..+-..+..
T Consensus 258 GET~Edv~e~l~~Lrelg--vd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 258 GETDEEVVQTMEDLRAAG--VDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred CCCHHHHHHHHHHHHHcC--CCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHH
Confidence 999999999999999996 8899997765321122333455778887776666554
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=191.99 Aligned_cols=238 Identities=21% Similarity=0.287 Sum_probs=181.3
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|..+.+. -+++ |..||++|.||...... ........++.+|+.+.++.+.+.|++.|.++| |||+...++
T Consensus 53 ~gr~~~~l-risv-T~~CNlrC~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tG------GEPllr~dl 123 (373)
T PLN02951 53 FGRRHNYL-RISL-TERCNLRCQYCMPEEGV-ELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTG------GEPTLRKDI 123 (373)
T ss_pred CCCcccEE-EEEE-cCCcCcCCCCCCCCcCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcchhhH
Confidence 35555543 3677 99999999999765321 111223458999999999999999999998876 467777789
Q ss_pred HHHHHHHhhc-CcE-E-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 016605 162 LEYVKDIRDM-GME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 236 (386)
Q Consensus 162 ~~~i~~ik~~-g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~ 236 (386)
.++++.+++. |+. + .+|||.+..+.++.|+++|+++|++++|+. ++.|+.+.+.+.+++++++|+.+.++|+ .+.
T Consensus 124 ~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vk 203 (373)
T PLN02951 124 EDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVK 203 (373)
T ss_pred HHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEE
Confidence 9999998875 764 4 468998777889999999999999999999 8999999887889999999999999997 477
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH-hC--------CCcce
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI-VM--------PKAMV 307 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~-~l--------p~~~i 307 (386)
+++++-.|.|.+++.++++++++++ -.+.+..|+|.+++++......+.+++++.+...-- +. |..++
T Consensus 204 in~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y 280 (373)
T PLN02951 204 VNCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNF 280 (373)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEE
Confidence 7777655889999999999999985 368899999999887655555677777776643210 11 11233
Q ss_pred eec--CcccccChhHHHhhhhcCcccc
Q 016605 308 RLS--AGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 308 ~i~--~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
++. .|.+++.... ...||.+||.+
T Consensus 281 ~~~~~~g~ig~I~~~-s~~FC~~CnRl 306 (373)
T PLN02951 281 RIDGHCGSVSFITSM-TEHFCAGCNRL 306 (373)
T ss_pred EECCCCeEEEEEcCC-cccccccCCeE
Confidence 343 2445555554 45699999998
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=184.68 Aligned_cols=238 Identities=21% Similarity=0.305 Sum_probs=183.1
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|..+.+.. +++ |..||++|.||-..... ...++...+++|||...++.+.+.|++.|-++| |||+...++
T Consensus 6 ~gR~~~~LR-iSv-TdrCNfrC~YCm~eg~~-~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTG------GEPllR~dl 76 (322)
T COG2896 6 FGRPVRYLR-ISV-TDRCNFRCTYCMPEGPL-AFLPKEELLSLEEIRRLVRAFAELGVEKVRLTG------GEPLLRKDL 76 (322)
T ss_pred cCCEeceEE-EEE-ecCcCCcccccCCCCCc-ccCcccccCCHHHHHHHHHHHHHcCcceEEEeC------CCchhhcCH
Confidence 366665433 466 99999999999765412 223333468999999999999999999998876 578899999
Q ss_pred HHHHHHHhhcCcE-E-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeE
Q 016605 162 LEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 237 (386)
Q Consensus 162 ~~~i~~ik~~g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~ 237 (386)
.++++.+++.++. + .+|||.+.+..++.||+||+++|++|+|++ ++.|.+|.+...++++++.|+.|.++|+. |..
T Consensus 77 ~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKl 156 (322)
T COG2896 77 DEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKL 156 (322)
T ss_pred HHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEE
Confidence 9999999876654 4 566999999999999999999999999999 99999998777799999999999999996 999
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC-CCCCCCCCCCHHHHHHHHHHHHHhC--------CCccee
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG-TPLQDQKPVEIWEMIRMIATARIVM--------PKAMVR 308 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g-T~l~~~~~~s~~e~~~~~a~~R~~l--------p~~~i~ 308 (386)
++++--|-|++++.+++++++..+ + .+.|..|+|... ..+......+..++.+.+...-... |..++.
T Consensus 157 N~Vv~kgvNd~ei~~l~e~~~~~~--~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~ 233 (322)
T COG2896 157 NTVLMKGVNDDEIEDLLEFAKERG--A-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAKYFI 233 (322)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcC--C-ceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCceEEE
Confidence 888855889999999999999996 3 789999999874 2222223567777777665411111 112233
Q ss_pred ecCc-ccccChhHHHhhhhcCcccc
Q 016605 309 LSAG-RVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 309 i~~g-~~~~~~~~~~~~l~~Gan~~ 332 (386)
...+ .+.+..+.... ||++||.+
T Consensus 234 ~~~~~~ig~I~p~~~~-FC~~CnR~ 257 (322)
T COG2896 234 HPDGGEIGFIAPVSNP-FCATCNRL 257 (322)
T ss_pred eCCCcEEEEEcCCCch-hhhhccee
Confidence 3332 45555555344 99999998
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=196.74 Aligned_cols=255 Identities=15% Similarity=0.133 Sum_probs=175.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHH-HHHcC---CcEEEEecccCCCCCChhhHHHHHHHHHHHh--
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQK-AKEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKDIR-- 169 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~-~~~~G---~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-- 169 (386)
-++|+.+|.||.+....... ..... -.+.+.+++.. +...+ ++.|+++|| +|+...+..+..+++.+++.-
T Consensus 7 iPFC~~~C~yC~f~~~~~~~-~~~~~-y~~~l~~Ei~~~~~~~~~~~v~~i~~GGG-tPs~l~~~~l~~ll~~i~~~~~~ 83 (360)
T TIGR00539 7 IPFCENKCGYCDFNSYENKS-GPKEE-YTQALCQDLKHALSQTDQEPLESIFIGGG-TPNTLSVEAFERLFESIYQHASL 83 (360)
T ss_pred eCCCcCcCCCCCCcccCcCc-cCHHH-HHHHHHHHHHHHHHhcCCCcccEEEeCCC-chhcCCHHHHHHHHHHHHHhCCC
Confidence 48999999999987542111 00000 12333333332 22234 567777664 454433444455555554322
Q ss_pred hcCcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-C
Q 016605 170 DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 244 (386)
Q Consensus 170 ~~g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-g 244 (386)
..+.+ +.++++.++++.++.|+++|++++++++|++ +++++.+++.+++++++++++.++++|+. +++++|+|+ |
T Consensus 84 ~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 84 SDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 22344 4567788999999999999999999999999 89999999999999999999999999996 899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCCCc-cee--ec----Ccccc
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMPKA-MVR--LS----AGRVR 315 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~--~~~s~~e~~~~~a~~R~~lp~~-~i~--i~----~g~~~ 315 (386)
+|.+++.++++++.+++ ++++.++.++|.|||++... ..++.++..+++..+...+... +.+ ++ ++...
T Consensus 164 qt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~~~~ 241 (360)
T TIGR00539 164 QTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAKAGYQV 241 (360)
T ss_pred CCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcCCCHHH
Confidence 99999999999999996 89999999999999998653 2467777778877776666432 222 11 11110
Q ss_pred -----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcC
Q 016605 316 -----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 316 -----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G 357 (386)
+-...+..+|++||.+.+.+.++.+. .+.++-.+.+.+.+
T Consensus 242 ~hn~~yw~~~~~lg~G~~A~s~~~~~~~~n~--~~~~~Y~~~~~~~~ 286 (360)
T TIGR00539 242 KHNLAYWGAKDYLGCGAGAHGCVANERFFAK--KLIKNYIKDPLQRG 286 (360)
T ss_pred HHHHHhcCCCCEEEEcCCccccCCCeEEEec--CCHHHHHHHHHcCC
Confidence 11233477888888887766544322 34444445554433
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=195.53 Aligned_cols=237 Identities=20% Similarity=0.258 Sum_probs=172.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~ 173 (386)
-++|+.+|.||.+.... +........++.++++++.... .+++.|+++|| +|+...+..++.+.+.++... ..++
T Consensus 10 iPfC~~~C~yC~~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGG-tps~l~~~~l~~L~~~i~~~~~~~~~ 86 (374)
T PRK05799 10 IPFCKQKCLYCDFPSYS--GKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGG-TPTYLSLEALEILKETIKKLNKKEDL 86 (374)
T ss_pred eCCccCCCCCCCCCccc--CCcchHHHHHHHHHHHHHhhcCCCceeEEEECCC-cccCCCHHHHHHHHHHHHhCCCCCCC
Confidence 48999999999987532 1111111125666666554322 24566766554 566555555556666655432 1234
Q ss_pred E--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-CCCHH
Q 016605 174 E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEAEE 248 (386)
Q Consensus 174 ~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-get~e 248 (386)
+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.+++++.+++++.++++|+. +++++|+|+ |||.+
T Consensus 87 eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e 166 (374)
T PRK05799 87 EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLE 166 (374)
T ss_pred EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHH
Confidence 4 4566778999999999999999999999999 89999999999999999999999999997 999999999 99999
Q ss_pred HHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-ceeec------Ccccc
Q 016605 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-MVRLS------AGRVR 315 (386)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~i~i~------~g~~~ 315 (386)
++.++++++.+++ ++++.++.+.|.|||++.. ...++.++..+++..+...+.+. +.+.. ++...
T Consensus 167 ~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~~~~~~ 244 (374)
T PRK05799 167 DWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAKPGKEC 244 (374)
T ss_pred HHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeECCCcch
Confidence 9999999999996 8999999999999999753 34567788888888887776542 33322 12111
Q ss_pred cC-----hhHHHhhhhcCccccccCCc
Q 016605 316 FS-----MPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 316 ~~-----~~~~~~~l~~Gan~~~~g~~ 337 (386)
.+ ......+|++||.+.+.|.+
T Consensus 245 ~hn~~yw~~~~~~g~G~gA~s~~~~~~ 271 (374)
T PRK05799 245 RHNLVYWDLEEYIGCGAGAHSYVNGKR 271 (374)
T ss_pred hhHHHHhcCCCEEEEcCCccccCCCEE
Confidence 11 12346788888888766643
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=188.76 Aligned_cols=237 Identities=18% Similarity=0.234 Sum_probs=178.6
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|.++.+. .+++ |+.||++|.||..... ....+...++.||+.+.++.+.+.|++.|.++| |||+..+++
T Consensus 9 ~gr~i~~l-~i~i-T~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tG------GEPllr~dl 78 (329)
T PRK13361 9 FGRTVTYL-RLSV-TDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTG------GEPLVRRGC 78 (329)
T ss_pred CCCccCeE-EEEe-cCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------cCCCccccH
Confidence 46666543 3567 9999999999975421 112233469999999999999999999998876 467777889
Q ss_pred HHHHHHHhhcC-c-EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 016605 162 LEYVKDIRDMG-M-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 236 (386)
Q Consensus 162 ~~~i~~ik~~g-~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~ 236 (386)
.++++.+++.+ + .+ .+|||.+..+.++.|+++|++++++++|+. ++.|+++++..++++++++|+.++++|+ .+.
T Consensus 79 ~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~ 158 (329)
T PRK13361 79 DQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIK 158 (329)
T ss_pred HHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceE
Confidence 99999988764 4 33 578998777899999999999999999999 8999999988899999999999999999 688
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC-CCCCCCCCHHHHHHHHHHHHHhC--------CCcce
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-LQDQKPVEIWEMIRMIATARIVM--------PKAMV 307 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~-l~~~~~~s~~e~~~~~a~~R~~l--------p~~~i 307 (386)
+++++-.|+|.+++.++++++++++ + .+.+..|+|..... +.....++.+++.+.+.....+. |..++
T Consensus 159 in~v~~~g~N~~ei~~~~~~~~~~g--i-~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (329)
T PRK13361 159 LNAVILRGQNDDEVLDLVEFCRERG--L-DIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYY 235 (329)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcC--C-eEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEE
Confidence 8777645899999999999999996 5 35688899987532 22234567888777654321111 11233
Q ss_pred eec--CcccccChhHHHhhhhcCcccc
Q 016605 308 RLS--AGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 308 ~i~--~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
.+. .+.+++.... ...||.+||.+
T Consensus 236 ~~~~~~~~ig~I~~~-s~~fC~~Cnr~ 261 (329)
T PRK13361 236 TMADSPIHIGFISPH-SHNFCHECNRV 261 (329)
T ss_pred EECCCCeEEEEEcCC-CccccccCCeE
Confidence 343 2345555544 45699999998
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-22 Score=193.50 Aligned_cols=255 Identities=15% Similarity=0.136 Sum_probs=178.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccC-CCC----HHHHHHHHHHHHH--cCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQK-LMT----KDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~-~~s----~eeI~~~~~~~~~--~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
-++|+.+|.||.|............ ... .+.+.++++.... .+++.|+++|| +|+...+..+..+++.++..
T Consensus 17 iPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGG-Tps~l~~~~l~~ll~~i~~~ 95 (400)
T PRK07379 17 IPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGG-TPSLLSVEQLERILTTLDQR 95 (400)
T ss_pred eccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCC-ccccCCHHHHHHHHHHHHHh
Confidence 4899999999999643211100000 001 2344444443222 24667777665 55544444445555555432
Q ss_pred hhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEee
Q 016605 169 RDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIG 242 (386)
Q Consensus 169 k~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~G 242 (386)
-.. ..+ +.++++.++++.++.|+++|++++++++|++ +++++.+++.++.++..++++.++++|+. +++++|+|
T Consensus 96 ~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~G 175 (400)
T PRK07379 96 FGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISG 175 (400)
T ss_pred CCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 211 223 4567788999999999999999999999999 99999999999999999999999999998 99999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-ceee--c--
Q 016605 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-MVRL--S-- 310 (386)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~i~i--~-- 310 (386)
+ |||.+++.++++++.+++ +++++++.+.|.|||++.. ...++.++..+++..++..|.+. +.+. +
T Consensus 176 lPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnf 253 (400)
T PRK07379 176 LPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYEISNY 253 (400)
T ss_pred CCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCceeeeehe
Confidence 9 999999999999999996 8999999999999999754 34577888888988888777543 3222 2
Q ss_pred --CcccccC-----hhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 311 --AGRVRFS-----MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 311 --~g~~~~~-----~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
+|....+ ....+.+|++||.+.+.|.++.+. .+..+-...+++
T Consensus 254 a~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~~n~--~~~~~y~~~~~~ 303 (400)
T PRK07379 254 AKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRFTRP--RTRKEYYQWVEA 303 (400)
T ss_pred ECCChHHHHHHHHhcCCcEEEEcCCcceecCCEEEEcC--CCHHHHHHHHHh
Confidence 2211111 123577888999888766543332 334444455544
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=191.39 Aligned_cols=235 Identities=13% Similarity=0.129 Sum_probs=165.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
-++|+.+|.||.+...... .......++.++++++...+ .+++.|+++|| +|+...+..++++++.++.....
T Consensus 7 iPFC~~~C~yC~f~~~~~~--~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGG-TPs~l~~~~l~~ll~~i~~~~~~ 83 (350)
T PRK08446 7 IPFCESKCGYCAFNSYENK--HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGG-TPSTVSAKFYEPIFEIISPYLSK 83 (350)
T ss_pred eCCccCcCCCCCCcCcCCC--cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCC-ccccCCHHHHHHHHHHHHHhcCC
Confidence 4899999999998754211 11111234555555554322 25667777655 56555555566777776655222
Q ss_pred CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-CCC
Q 016605 172 GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GEA 246 (386)
Q Consensus 172 g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-get 246 (386)
+.+ +.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.++..++++.++++|+. +++++|+|+ |+|
T Consensus 84 ~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 84 DCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 344 4566778999999999999999999999999 99999999999999999999999999996 899999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC--CCCHHHHHHHHHHHHHhCCC-ccee--ecC---cccc---
Q 016605 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMPK-AMVR--LSA---GRVR--- 315 (386)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~--~~s~~e~~~~~a~~R~~lp~-~~i~--i~~---g~~~--- 315 (386)
.+++.++++++.+++ ++++.++.+.|.|||++.... .++.++ ++..+...+.. .+.+ ++. +...
T Consensus 164 ~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~~~~~~~~~~~---~~~~~~~~l~~~Gy~~yeis~fa~~~~~~hn 238 (350)
T PRK08446 164 KKLLKEELKLAKELP--INHLSAYSLTIEENTPFFEKNHKKKDDEN---LAKFFIEQLEELGFKQYEISNFGKNYQCKHN 238 (350)
T ss_pred HHHHHHHHHHHHhcC--CCEEEeccceecCCChhHHhhhcCCCHHH---HHHHHHHHHHHCCCcEEEeehhhCcchhhhH
Confidence 999999999999996 899999999999999986532 233333 44444444433 2222 211 1110
Q ss_pred --cChhHHHhhhhcCccccccCCcc
Q 016605 316 --FSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 316 --~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+-......+|++||.+.+.+.++
T Consensus 239 ~~yw~~~~~lg~G~gA~s~~~~~~~ 263 (350)
T PRK08446 239 LGYWQGKDYLGCGAGAVGFVANKRF 263 (350)
T ss_pred HHHhCCCCEEEEcCCcccccCCeEE
Confidence 00223467888888887666443
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=191.39 Aligned_cols=198 Identities=14% Similarity=0.207 Sum_probs=151.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHH----HHHHHHH----HHHcCCcEEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDA----VMQAAQK----AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~ee----I~~~~~~----~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
-++|+.+|.||.+....... ..+.++ +.++++. ....+++.|+++|| +|+.-. .+.+.++++.
T Consensus 13 iPFC~~~C~yC~f~~~~~~~-----~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGG-tPs~l~---~~~l~~ll~~ 83 (378)
T PRK05660 13 IPWCVQKCPYCDFNSHALKG-----EVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGG-TPSLFS---AEAIQRLLDG 83 (378)
T ss_pred eCCccCcCCCCCCeecCCCC-----cCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCC-ccccCC---HHHHHHHHHH
Confidence 48999999999987532111 122222 2222222 11145677777665 444433 3555555555
Q ss_pred Hhh-----cCcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEe
Q 016605 168 IRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSG 238 (386)
Q Consensus 168 ik~-----~g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~ 238 (386)
+++ .+.+ +.++++.++.+.++.|+++|+++|++|+|++ +++++.+++.++.++.+++++.++++|+. ++++
T Consensus 84 l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~d 163 (378)
T PRK05660 84 VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLD 163 (378)
T ss_pred HHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 553 2334 4566788999999999999999999999999 99999999999999999999999999997 7999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCCC
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~--~~~s~~e~~~~~a~~R~~lp~ 304 (386)
+|+|+ |+|.+++.++++++.+++ ++++.++.+.|.|||++... ..++.++...++..+..++..
T Consensus 164 li~Glpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999996 99999999999999998763 235667777888877766644
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-22 Score=192.83 Aligned_cols=253 Identities=15% Similarity=0.170 Sum_probs=173.1
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCC--HHHHHHH-HHHHHH----cCCcEEEEecccCCCCCChhhHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMT--KDAVMQA-AQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILE 163 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s--~eeI~~~-~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~ 163 (386)
.++| ++|..+|.||.|..... .... .. .+.++++ ++.... ..++.++++|| +|+...+..+..+++
T Consensus 10 YiHI--PFC~~~C~yC~f~~~~~---~~~~-~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGG-TPs~l~~~~l~~ll~ 82 (370)
T PRK06294 10 YIHI--PFCTKKCHYCSFYTIPY---KEES-VSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGG-TPSLVPPALIQDILK 82 (370)
T ss_pred EEEe--CCccCcCCCCcCcccCC---CccC-HHHHHHHHHHHHHHHhhhhccCCceeEEEECCC-ccccCCHHHHHHHHH
Confidence 3454 89999999999875311 1110 10 1222222 221111 23556666554 566554444455555
Q ss_pred HHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEe
Q 016605 164 YVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (386)
Q Consensus 164 ~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~ 241 (386)
.++......+.+.+++..++++.++.|+++|++++++++|++ +++++.+.+.++.+++.++++.++++|+. +++++|+
T Consensus 83 ~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~ 162 (370)
T PRK06294 83 TLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIY 162 (370)
T ss_pred HHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeec
Confidence 443321112335667888999999999999999999999999 99999999999999999999999999996 9999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC------CCCCHHHHHHHHHHHHHhCCCc-cee--ec-
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPKA-MVR--LS- 310 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~------~~~s~~e~~~~~a~~R~~lp~~-~i~--i~- 310 (386)
|+ |+|.+++.+.++.+.+++ ++++.++.+.|.|||++... ..++.++..+++..+...+.+. +.+ ++
T Consensus 163 GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 240 (370)
T PRK06294 163 GLPTQSLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELAS 240 (370)
T ss_pred CCCCCCHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeeee
Confidence 99 999999999999999996 89999999999999987532 2356777778888777666442 222 21
Q ss_pred ---CcccccC-----hhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 311 ---AGRVRFS-----MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 311 ---~g~~~~~-----~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
++....+ ......+|++||.+.+.|.++... .+.++-...++
T Consensus 241 fa~~~~~~~hN~~yw~~~~~lg~G~gA~s~~~~~r~~n~--~~l~~Y~~~~~ 290 (370)
T PRK06294 241 YAKPQAQSKHNTYYWTDRPFLGLGVSASQYLHGIRSKNL--SRISHYLRALR 290 (370)
T ss_pred eeCCCchhhhhhhhccCCCEEEEcCCcceecCCEEEEcC--CCHHHHHHHHH
Confidence 1111111 123577888999888766543322 33444444443
|
|
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=192.26 Aligned_cols=200 Identities=16% Similarity=0.249 Sum_probs=159.1
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..+.+ ++|||++|.||..+... + +++..++++|+++++.+.+.|++++.|++.....++.+. ...++.++++.+
T Consensus 140 ~~i~i-srGCp~~CsfC~~~~~~--g--~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l 214 (414)
T TIGR01579 140 AFIKV-QDGCNFFCSYCIIPFAR--G--RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQI 214 (414)
T ss_pred EEEEe-ccCcCCCCCCCceeeec--C--CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHH
Confidence 34667 99999999999876432 2 355689999999999999999999998764433333221 113466666666
Q ss_pred hhc-CcE-EE---EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeEe
Q 016605 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSG 238 (386)
Q Consensus 169 k~~-g~~-i~---~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~--~Gi~v~~~ 238 (386)
++. ++. +. +++..++++.++.|+++| +..+.+++|+. +++++.++++++.+++.++++.+++ .|+.+.++
T Consensus 215 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 215 LQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred hcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 543 332 22 234457999999999987 88999999999 9999999999999999999999999 89999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIA 296 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~a 296 (386)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ .++.....+...
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 352 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVK 352 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHH
Confidence 99999 999999999999999996 899999999999999998754 456655444443
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=188.30 Aligned_cols=250 Identities=17% Similarity=0.132 Sum_probs=175.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~- 171 (386)
-++|+.+|.||.++.....+ ......++.++++++.+... +++.++++| ++|+... .+++.++++.+++.
T Consensus 8 iPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gG-Gtpt~l~---~~~l~~ll~~i~~~~ 81 (377)
T PRK08599 8 IPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGG-GTPTALS---AEQLERLLTAIHRNL 81 (377)
T ss_pred eCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCC-CCcccCC---HHHHHHHHHHHHHhC
Confidence 36899999999987532111 11112466777777655544 456666654 4554332 35555555555532
Q ss_pred C----cE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec
Q 016605 172 G----ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (386)
Q Consensus 172 g----~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 243 (386)
+ .+ +.++++.++++.++.|+++|++++++++|++ +++++.++++++++++.++++.++++|+. +++++|+|+
T Consensus 82 ~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~Gl 161 (377)
T PRK08599 82 PLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYAL 161 (377)
T ss_pred CCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCC
Confidence 1 23 4566788999999999999999999999999 99999999999999999999999999997 899999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC-cceeec-----
Q 016605 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK-AMVRLS----- 310 (386)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~-~~i~i~----- 310 (386)
|||.+++.++++++.+++ ++++.++.+.|.|||++.. .+.++.+...+++..+...+.. .+.+..
T Consensus 162 Pgqt~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~fa 239 (377)
T PRK08599 162 PGQTIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNFA 239 (377)
T ss_pred CCCCHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeeee
Confidence 999999999999999996 8999999999999999753 2335666767777777666543 233322
Q ss_pred -Ccccc-----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 311 -AGRVR-----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 311 -~g~~~-----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
++... +-...+..+|++||.+.+.|.++.+. .+.++-.+.+++
T Consensus 240 ~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~--~~~~~Y~~~~~~ 288 (377)
T PRK08599 240 KPGFESRHNLTYWNNEEYYGFGAGASGYVNGVRYQNI--GPIKHYLKAINE 288 (377)
T ss_pred CCChHHHHHHHHhcCCcEEEEccCcccccCCEEEEcC--CCHHHHHHHHhc
Confidence 11110 01123467888888887666433322 234444444433
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=189.69 Aligned_cols=260 Identities=18% Similarity=0.186 Sum_probs=178.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccC--CCCHHHHHHHHHHHHH-c-----CCcEEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQK--LMTKDAVMQAAQKAKE-A-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~--~~s~eeI~~~~~~~~~-~-----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
-++|+.+|.||.+............ ..=.+.+.++++...+ . .++.++++|| +|+.-.+..+..+++.++.
T Consensus 9 iPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGG-TPs~l~~~~l~~ll~~i~~ 87 (375)
T PRK05628 9 VPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGG-TPSLLGAEGLARVLDAVRD 87 (375)
T ss_pred eCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCC-ccccCCHHHHHHHHHHHHH
Confidence 4799999999998643211100000 0014666666665443 2 2556666554 5554434444555555544
Q ss_pred Hhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEe
Q 016605 168 IRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (386)
Q Consensus 168 ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~ 241 (386)
.... +.+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.++..++++.++++|+. +++++|+
T Consensus 88 ~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~ 167 (375)
T PRK05628 88 TFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY 167 (375)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 3222 234 3456788999999999999999999999999 99999999999999999999999999998 9999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-c--eeec-
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-M--VRLS- 310 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~--i~i~- 310 (386)
|+ |||.+++.++++++.+++ ++++.++.+.+.|||++.. .+.++.++..+++..+..++... + +.++
T Consensus 168 GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye~s~ 245 (375)
T PRK05628 168 GTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYEVSN 245 (375)
T ss_pred cCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeeeecc
Confidence 98 999999999999999996 8999999999999999754 23456667777877777665432 2 2221
Q ss_pred ---Ccccc-----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcC
Q 016605 311 ---AGRVR-----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 361 (386)
Q Consensus 311 ---~g~~~-----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~ 361 (386)
++... .-......+|++||.+.+.|.++... .+.++-...+++ |-.|+
T Consensus 246 fa~~~~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~~n~--~~l~~Y~~~v~~-~~~p~ 301 (375)
T PRK05628 246 WARPGGECRHNLGYWRGGDWWGAGPGAHSHVGGVRWWNV--KHPAAYAARLAA-GALPV 301 (375)
T ss_pred ccCCCcccccchhhcCCCCEEEEccCcccccCCEEEEcC--CCHHHHHHHHHc-CCCCc
Confidence 11110 00133577888898887766443322 334444444543 44454
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=191.84 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=174.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc----CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
-++|+.+|.||.+....... ........+.++++++...+. .+..++++| |+|+...+..++++++.++.....
T Consensus 46 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 46 IPFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGG-GTPTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred eCCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 48999999999986532111 011111345666666554432 255666644 466655555566677766654332
Q ss_pred ---CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-
Q 016605 172 ---GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 243 (386)
Q Consensus 172 ---g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl- 243 (386)
+.+ +.+++..++++.++.|+++|++++++|+|++ ++.++.+.++++.++..++++.++++|+. +++++|+|+
T Consensus 124 ~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP 203 (430)
T PRK08208 124 DLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP 203 (430)
T ss_pred CCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 234 4566778999999999999999999999999 99999999999999999999999999997 789999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-ceeec------Cccc--
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS------AGRV-- 314 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~-~i~i~------~g~~-- 314 (386)
++|.+++.++++++.+++ ++++.++.+.+.|+|++.....++.++..+++..++..|... +.+.. .+..
T Consensus 204 ~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~far~~~~~~ 281 (430)
T PRK08208 204 GQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRMFRRNDAPDK 281 (430)
T ss_pred CCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecceecCCcccC
Confidence 999999999999999996 899999999999999998766667788888888887776443 22221 1111
Q ss_pred ---cc-ChhHHHhhhhcCccccccCC
Q 016605 315 ---RF-SMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 315 ---~~-~~~~~~~~l~~Gan~~~~g~ 336 (386)
.. ....+..+|++||.+.+.+.
T Consensus 282 ~~~~~~~~~~~~lG~G~gA~s~~~~~ 307 (430)
T PRK08208 282 GAPAYSCQTDGMLGLGCGARSYTGNL 307 (430)
T ss_pred CCCccccCCCCEEEecCCeeecCCCC
Confidence 11 12235678888988876654
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=190.14 Aligned_cols=260 Identities=13% Similarity=0.099 Sum_probs=181.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
-++|..+|.||.|.......... ..-.+.+.++++...+ ..++.|+++|| +|+...+..++.+++.++..-..
T Consensus 11 IPFC~~kC~yC~f~~~~~~~~~~--~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGG-TPs~l~~~~L~~ll~~i~~~f~~ 87 (380)
T PRK09057 11 WPFCLAKCPYCDFNSHVRHAIDQ--ARFAAAFLRELATEAARTGPRTLTSIFFGGG-TPSLMQPETVAALLDAIARLWPV 87 (380)
T ss_pred eCCcCCcCCCCCCcccCcCcCCH--HHHHHHHHHHHHHHHHHcCCCCcCeEEeCCC-ccccCCHHHHHHHHHHHHHhCCC
Confidence 48999999999997542111100 0124555555554332 24667777665 56655454555555555543211
Q ss_pred ----CcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CC
Q 016605 172 ----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (386)
Q Consensus 172 ----g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge 245 (386)
.+.+.++++.++.+.++.|+++|++++++|+|++ +++++.+++.++.++..++++.+++++..+++++|+|+ |+
T Consensus 88 ~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 88 ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 2335677888999999999999999999999999 99999999999999999999999999888999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCcce---eec----Cc
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKAMV---RLS----AG 312 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~~i---~i~----~g 312 (386)
|.+++.+.++.+.+++ ++++.++.+.+.|||++.. ...++.++..+++..++.++....+ .++ .|
T Consensus 168 t~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s~~a~~g 245 (380)
T PRK09057 168 TLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISNHARPG 245 (380)
T ss_pred CHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhHHHcCCC
Confidence 9999999999999996 9999999999999998753 2346778888888888877754321 111 22
Q ss_pred ccc-----cChhHHHhhhhcCcccccc--CCccccCCCCChhHHHHHHHHcCCCcC
Q 016605 313 RVR-----FSMPEQALCFLAGANSIFT--GEKLLTTPNNDFDADQLMFKVLGLTPK 361 (386)
Q Consensus 313 ~~~-----~~~~~~~~~l~~Gan~~~~--g~~~~t~~~~~~~~~~~~i~~~G~~p~ 361 (386)
... +-....+.+|++||.+.+. |.++....-.+.++-...+++ |-.|+
T Consensus 246 ~~~~hn~~yw~~~~~lG~G~gA~s~~~~~~~~~~~~n~~~~~~Y~~~i~~-~~~p~ 300 (380)
T PRK09057 246 AESRHNLTYWRYGDYAGIGPGAHGRLTLGGERHATATEKAPEAWLERVER-NGHGI 300 (380)
T ss_pred chhhhHHHHhCCCCEEEEcCCccccccCCCceEEEecCCCHHHHHHHHHc-CCCCc
Confidence 111 1123457788888888764 333332223344554455544 33443
|
|
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=189.48 Aligned_cols=195 Identities=16% Similarity=0.219 Sum_probs=154.0
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
...+.+ +.|||++|.||..+... + +++..++++|+++++.+.+.|+++|.+.+.....+|.+..-..+.++++.+
T Consensus 147 ~a~v~i-~rGC~~~CsFC~~p~~~--g--~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 147 CAYVTV-MRGCDKKCTYCVVPKTR--G--KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred EEEEEe-ccCcCCCCccCCcccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHH
Confidence 456677 89999999999876421 2 235579999999999999999999999875433333221112355555555
Q ss_pred hhc-Cc---EEE-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~---~i~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++ ... .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.+++.++++.++++ |+.+.++
T Consensus 222 ~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d 301 (437)
T PRK14331 222 AEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTD 301 (437)
T ss_pred hcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecC
Confidence 432 32 221 23445899999999998 599999999999 99999999999999999999999998 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 290 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e 290 (386)
+|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+ ..+.++
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~~ 353 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDEV 353 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHHH
Confidence 99999 999999999999999996 788999999999999997754 344433
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=188.79 Aligned_cols=193 Identities=15% Similarity=0.218 Sum_probs=155.2
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
...+.+ +.|||++|+||..+.. .+ +++..++++|+++++.+.+.|+++|.+++.....++.+.....+.++++.+
T Consensus 150 ~a~l~i-srGC~~~CsFC~ip~~--rG--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 150 SAFVPV-MRGCNNMCAFCVVPFT--RG--RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred EEEEEe-ccCCCCCCCCCCcccc--cC--CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHH
Confidence 345677 9999999999987643 22 345589999999999999999999999875443334322223456666666
Q ss_pred hhc--CcEEE---EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM--GMEVC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~--g~~i~---~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. +..+. .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.++..++++.+++. |+.+.++
T Consensus 225 ~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 225 SRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred hhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 532 22332 23445789999999986 799999999999 99999999999999999999999999 9999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC-CC-CCCH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEI 288 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~-~~-~~s~ 288 (386)
+|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++.. .+ ..+.
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 99999 999999999999999996 8899999999999999874 33 3453
|
|
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-21 Score=188.32 Aligned_cols=196 Identities=16% Similarity=0.225 Sum_probs=155.5
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|.+.|.+.+.....+|.+. ..+++.++++.+
T Consensus 137 ~~i~~-srGC~~~CsfC~~~~~~--G--~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 137 AYLKV-AEGCNRRCAFCIIPSIR--G--KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred EEEEE-ccCCCCCCCcCCeeccc--C--CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 34677 99999999999876432 2 245579999999999999999999988764333334321 124566677766
Q ss_pred hhcC-cE---E-EEecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDMG-ME---V-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~g-~~---i-~~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+.+ +. + .+.+..++++.++.|+++| +..+.+++|+. +++++.++++++.++.+++++.++++ |+.+.++
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 6543 32 1 1234568999999999995 88999999999 99999999999999999999999998 5678899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 292 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~ 292 (386)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ ..+.++..
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~ 345 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHHH
Confidence 99999 999999999999999996 889999999999999987654 35554433
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=187.53 Aligned_cols=188 Identities=16% Similarity=0.278 Sum_probs=155.3
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~ 167 (386)
...+.+ +.|||++|.||..+... + +.+..++++|+++++.+.+.|++.|.+++.....+|.+. ..+.+.++++.
T Consensus 156 ~~~i~I-~rGC~~~CsfC~~p~~~--G--~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~ 230 (459)
T PRK14338 156 TVHVPI-IYGCNMSCSYCVIPLRR--G--RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEA 230 (459)
T ss_pred EEEEEc-ccCCCCCCCcCCeeccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHH
Confidence 345677 89999999999876432 2 234579999999999999999999999875544445442 23567777777
Q ss_pred Hhhc-Cc---EEE-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 168 IRDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 168 ik~~-g~---~i~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
+++. ++ .+. .++..++++.++.|+++ |+.++.+++|+. +++++.++++++.++++++++.+++. |+.+.+
T Consensus 231 l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~ 310 (459)
T PRK14338 231 VHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTT 310 (459)
T ss_pred HHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 7653 43 232 24566899999999985 589999999999 99999999999999999999999998 788999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~ 283 (386)
++|+|+ |||.+|+.++++++++++ ++.+.++.|.|.|||++...
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~ 355 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEM 355 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhC
Confidence 999999 999999999999999996 88999999999999998754
|
|
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=187.42 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=154.3
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh--HHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~--~~~l~~~i 165 (386)
..+.+++ +.|||++|+||..+... + +++..++|+|+++++.+.+.|+++|.+.+.....+|.+.. ...+.+++
T Consensus 212 ~~a~v~I-~~GC~~~CsFC~vp~~r--G--~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 212 IKAWVNI-MYGCDKFCTYCIVPYTR--G--KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred eEEEEEe-cCCCCCCCcCCcccccC--C--CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHH
Confidence 4567888 99999999999876432 2 3345799999999999999999999988765444443211 12355666
Q ss_pred HHHhhcCcE---EE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 016605 166 KDIRDMGME---VC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (386)
Q Consensus 166 ~~ik~~g~~---i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~ 236 (386)
+.+.+.++. +. .++..++++.++.|+++| +.++.+++|+. +++++.++++++.++++++++.++++ |+.++
T Consensus 287 ~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 287 DEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred HHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 666654443 22 235568999999999999 67999999999 99999999999999999999999998 67788
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
+++|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCc
Confidence 9999999 999999999999999996 889999999999999987543
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=189.84 Aligned_cols=181 Identities=18% Similarity=0.284 Sum_probs=148.5
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
.+.. ++|||++|.||+.+... +...++..++|.|+++++.+.+. |++.|.+..+ ... ...+++.++++.+
T Consensus 199 ~i~t-sRGCp~~C~FC~~~~~~--~g~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd-~f~----~~~~~~~~l~~~l 270 (472)
T TIGR03471 199 SLYT-GRGCPSKCTFCLWPQTV--GGHRYRTRSAESVIEEVKYALENFPEVREFFFDDD-TFT----DDKPRAEEIARKL 270 (472)
T ss_pred EEEe-cCCCCCCCCCCCCCccC--CCCceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCC-CCC----CCHHHHHHHHHHH
Confidence 3455 89999999999875322 12345668999999999988874 7788877643 221 2345666777777
Q ss_pred hhcCcEEEE-ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CC
Q 016605 169 RDMGMEVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 245 (386)
Q Consensus 169 k~~g~~i~~-t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge 245 (386)
++.++...+ ....++++.++.|+++|+.++.+|+|+. +++++.++++++.++..++++.++++|+.+.+++|+|+ ||
T Consensus 271 ~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPge 350 (472)
T TIGR03471 271 GPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGE 350 (472)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCC
Confidence 766665322 2234799999999999999999999999 99999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~ 281 (386)
|.+++.++++++.+++ ++.+.++.+.|.|||++.
T Consensus 351 t~e~~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~ 384 (472)
T TIGR03471 351 TRETIRKTIDFAKELN--PHTIQVSLAAPYPGTELY 384 (472)
T ss_pred CHHHHHHHHHHHHhcC--CCceeeeecccCCCcHHH
Confidence 9999999999999996 789999999999999874
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=169.72 Aligned_cols=186 Identities=29% Similarity=0.453 Sum_probs=144.8
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCChhhHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYV 165 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G-----~~~v~l~~g~~~~~ge~~~~~~l~~~i 165 (386)
.+.+ |++|+++|.||+..... + . ....+++++.+.++.+.+.| ...+.++||. ++...+..+..+++.+
T Consensus 4 ~i~~-t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~-~~~~~~~~~~~~~~~~ 77 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGT-PTLLSPEQLEELLEAI 77 (216)
T ss_pred EEEe-cCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCC-CCCCCHHHHHHHHHHH
Confidence 3556 99999999999987542 1 1 34578999999999986654 3556666653 3222111234444444
Q ss_pred HHHhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcC-CeeeEeE
Q 016605 166 KDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGG 239 (386)
Q Consensus 166 ~~ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~G-i~v~~~~ 239 (386)
+..... +.. +.++.+.++++.++.|+++|++.+.+++++. ++.++.++++.++++++++++.++++| +.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 78 REILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 443322 223 3344466899999999999999999999999 899999999999999999999999999 8999999
Q ss_pred Eeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 240 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 240 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
++|+ +++.+++.++++++++++ ++.+.+..|+|.|||++...+
T Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 158 IVGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred EecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhc
Confidence 9999 699999999999999996 889999999999999987544
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=180.99 Aligned_cols=238 Identities=18% Similarity=0.240 Sum_probs=176.9
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|.++.+. -+++ |.+||++|.||...... ........++.+++.+.++.+.+.|++.|.++| |||+..+++
T Consensus 12 ~~r~~~~l-~i~v-T~~Cnl~C~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l 82 (331)
T PRK00164 12 FGRKFTYL-RISV-TDRCNFRCTYCMPEGYL-PFLPKEELLSLEEIERLVRAFVALGVRKVRLTG------GEPLLRKDL 82 (331)
T ss_pred CCCccCeE-EEEE-cCCcCcCCCCCCCccCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcCccCH
Confidence 46666643 3566 99999999999865321 112334569999999999999899999998876 356566778
Q ss_pred HHHHHHHhhc-C-cEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 016605 162 LEYVKDIRDM-G-MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 236 (386)
Q Consensus 162 ~~~i~~ik~~-g-~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~ 236 (386)
.++++.+++. + ..+ .+|||.+..+.++.|+++|++.+++++|+. ++.|+.+++..++++++++++.+.++|+ .+.
T Consensus 83 ~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~ 162 (331)
T PRK00164 83 EDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVK 162 (331)
T ss_pred HHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEE
Confidence 8888888765 3 343 467898777889999999999999999999 8999999888899999999999999999 788
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC-CCCCCCCCCHHHHHHHHHHHHH-h-------CCCcce
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARI-V-------MPKAMV 307 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT-~l~~~~~~s~~e~~~~~a~~R~-~-------lp~~~i 307 (386)
+++++..|.+.+++.++++++++++ + .+.+..|+|.+.. .+......+.+++.+.+..... . -|..++
T Consensus 163 i~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (331)
T PRK00164 163 VNAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPRARSGGPAQYF 239 (331)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccccCCCCCCCEEE
Confidence 8777645889999999999999996 3 5788889998754 3333345677777766543311 0 123334
Q ss_pred eec--CcccccChhHHHhhhhcCcccc
Q 016605 308 RLS--AGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 308 ~i~--~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
.+. .+.+.+.... ...||.+||.+
T Consensus 240 ~~~~~~~~ig~i~~~-s~~fC~~c~r~ 265 (331)
T PRK00164 240 RHPDYGGEIGLIAPV-THDFCASCNRL 265 (331)
T ss_pred EECCCCeEEEEEeCC-CCcccccCCeE
Confidence 442 3444555443 35689999988
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=188.42 Aligned_cols=198 Identities=15% Similarity=0.252 Sum_probs=157.1
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh-HHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~i 168 (386)
..+.+ +.|||++|.||..+... + +++..++++|+++++.+.+.|++.|.+++.....+|.+.. ...+.++++.+
T Consensus 141 ~~i~~-srGC~~~CsfC~~~~~~--g--~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 141 AFLKI-QEGCDKFCTYCIVPYAR--G--RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred EEEEH-HhCcCCCCCcCceeccc--C--CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 44566 89999999999876432 2 3455899999999999999999999988743332332211 13466677776
Q ss_pred hhc-CcE-EEE---ecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcC--CeeeEe
Q 016605 169 RDM-GME-VCC---TLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG--INVCSG 238 (386)
Q Consensus 169 k~~-g~~-i~~---t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~G--i~v~~~ 238 (386)
++. ++. +.. ++..++++.++.|+++| +.++.+++|+. +++++.++++++.+++.++++.++++| +.+.++
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 654 332 222 34457899999999995 99999999999 999999999999999999999999998 889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 294 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~ 294 (386)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ ..+.+...+.
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r 351 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEVKKER 351 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHHHHHH
Confidence 99999 999999999999999996 899999999999999998664 3455443333
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=187.27 Aligned_cols=255 Identities=19% Similarity=0.217 Sum_probs=180.4
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCChhhHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEY 164 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~~~~~~l~~~ 164 (386)
.|+| ++|+.+|.||.|.... ........-.+.++++++...+ ..++.|+++|| +|+...+..+..+++.
T Consensus 65 YiHI--PFC~~~C~yC~f~~~~--~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGG-TPs~L~~~~l~~ll~~ 139 (449)
T PRK09058 65 YIHI--PFCRTHCTFCGFFQNA--WNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGG-TPTALSAEDLARLITA 139 (449)
T ss_pred EEEe--CCcCCcCCCCCCcCcC--CchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCC-ccccCCHHHHHHHHHH
Confidence 3454 7999999999986431 1111111245666666665443 23556666554 5665545455555555
Q ss_pred HHHHhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcC-CeeeEe
Q 016605 165 VKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSG 238 (386)
Q Consensus 165 i~~ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~G-i~v~~~ 238 (386)
++..... ..+ +..++..++++.++.|+++|++++++|+|++ +++++.+++.++.++++++++.++++| ..++++
T Consensus 140 i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~D 219 (449)
T PRK09058 140 LREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCD 219 (449)
T ss_pred HHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 5543322 234 4566778999999999999999999999999 999999999999999999999999999 569999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCC-CHHHHHHHHHHHHHhCCCc-ceee
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPV-EIWEMIRMIATARIVMPKA-MVRL 309 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~-s~~e~~~~~a~~R~~lp~~-~i~i 309 (386)
+|+|+ |||.+++.+.++++.+++ ++++.++.+.+.|||++.. .+.+ +.++..+++..++..|.+. +.++
T Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~y 297 (449)
T PRK09058 220 LIFGLPGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQL 297 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 99999 999999999999999996 8999999999999998753 2344 7888889998888777543 3332
Q ss_pred c------Cccc-c-----cChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 310 S------AGRV-R-----FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 310 ~------~g~~-~-----~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
. +++. + .-.....++|++||.+.+.|.++... .+.++-.+.+.
T Consensus 298 eis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~~n~--~~l~~Y~~~i~ 352 (449)
T PRK09058 298 SNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGYSYMNH--RDLDTYHEAIA 352 (449)
T ss_pred eeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCCEEEECC--CCHHHHHHHHH
Confidence 2 2221 1 11233467788888887666443322 23444444443
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=186.26 Aligned_cols=189 Identities=17% Similarity=0.250 Sum_probs=151.5
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ 167 (386)
...+.+ +.|||++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.+.....+|.+ .....+.++++.
T Consensus 158 ~a~v~i-srGCp~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~ 232 (502)
T PRK14326 158 AAWVSI-SVGCNNTCTFCIVPSLR--G--KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRA 232 (502)
T ss_pred eEEEEE-ccCCCCCCccCceeccC--C--CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHH
Confidence 356777 99999999999876432 2 23457999999999999999999999877543333322 122345555555
Q ss_pred Hhhc-CcE-E---EEecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 168 IRDM-GME-V---CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 168 ik~~-g~~-i---~~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
+.+. ++. + +.++..++++.++.|+++| +..+.+++|+. +++++.++++++.+++.++++.+++. |+.+.+
T Consensus 233 l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~ 312 (502)
T PRK14326 233 CGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITT 312 (502)
T ss_pred HHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 5432 332 2 2234457999999999997 89999999999 99999999999999999999999996 788999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||++...+
T Consensus 313 ~~IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 313 DIIVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCc
Confidence 999999 999999999999999996 788899999999999988654
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=184.20 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=169.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCC--cccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGV--KGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~--~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
-++|..+|.||.|........ ..| .+.+.++++...+ ..++.|+++|| +|+...+..++.+++.++...
T Consensus 18 iPFC~~~C~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~i~tiy~GGG-TPs~l~~~~l~~ll~~i~~~~ 92 (390)
T PRK06582 18 WPFCLSKCPYCDFNSHVASTIDHNQW----LKSYEKEIEYFKDIIQNKYIKSIFFGGG-TPSLMNPVIVEGIINKISNLA 92 (390)
T ss_pred eCCCcCcCCCCCCeeccCCCCCHHHH----HHHHHHHHHHHHHHccCCceeEEEECCC-ccccCCHHHHHHHHHHHHHhC
Confidence 489999999999975421110 111 2223333332222 24667777665 565555555566666665432
Q ss_pred hc----CcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-
Q 016605 170 DM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL- 243 (386)
Q Consensus 170 ~~----g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl- 243 (386)
.. .+.+.+++..++++.++.|+++|++++++|+|++ +++++.+.+.|+.++.+++++.+++++..+++++|+|+
T Consensus 93 ~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlP 172 (390)
T PRK06582 93 IIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARS 172 (390)
T ss_pred CCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCC
Confidence 21 2335677888999999999999999999999999 99999999999999999999999999778999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc-cee--ec----
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKA-MVR--LS---- 310 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~e~~~~~a~~R~~lp~~-~i~--i~---- 310 (386)
|+|.+++.++++.+.+++ |+++.++.+.+.|||++.. ...++.++..+++..+...+... +.+ ++
T Consensus 173 gqt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCceeeceeeeC
Confidence 999999999999999996 8999999999999999853 34567888888888887776542 222 21
Q ss_pred CcccccC-----hhHHHhhhhcCccccccC
Q 016605 311 AGRVRFS-----MPEQALCFLAGANSIFTG 335 (386)
Q Consensus 311 ~g~~~~~-----~~~~~~~l~~Gan~~~~g 335 (386)
+|....+ ......++++||.+.+.+
T Consensus 251 ~g~~~~hn~~yw~~~~~lg~G~gA~s~~~~ 280 (390)
T PRK06582 251 IGQECLHNLTYWNYNSYLGIGPGAHSRIIE 280 (390)
T ss_pred CChhhhhHHHHhcCCcEEEECCCeeecccC
Confidence 2211111 123467888888887654
|
|
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=182.21 Aligned_cols=195 Identities=15% Similarity=0.283 Sum_probs=151.2
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--hhHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVK 166 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--~~~~~l~~~i~ 166 (386)
...+.+ ++|||++|+||..+.. .+ +++..++|+|+++++.+.+.|++++.+++.....+|.+ ..+..+++.+.
T Consensus 134 ~~~i~i-srGC~~~CsfC~ip~~--~G--~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 134 IEIIPI-NQGCLGNCSYCITKHA--RG--KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred EEEEEE-ccCCCCCCCCCccccC--CC--CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH
Confidence 456777 9999999999987642 22 34557999999999999999999999987543333322 13445555444
Q ss_pred HHhhc-CcEEE-EecC---CCCHHHHHHHHHhc-cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 167 DIRDM-GMEVC-CTLG---MLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 167 ~ik~~-g~~i~-~t~g---~l~~e~l~~Lk~aG-~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
.++.. .+.+. .++. .++++.++.++..+ +..+.+++|+. +++++.++++++.++..++++.+++. |+.+.+
T Consensus 209 ~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~ 288 (420)
T TIGR01578 209 EIPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLST 288 (420)
T ss_pred hCCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 44321 22222 1222 24677777777554 68899999999 99999999999999999999999998 899999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE 290 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e 290 (386)
++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+..+.+.
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~~ 340 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTNI 340 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHHH
Confidence 999999 999999999999999996 889999999999999998766555543
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=182.77 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=155.0
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh----hHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT----NFNQILEY 164 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~----~~~~l~~~ 164 (386)
.+.+.+ +.|||++|.||..+... +.. +..++|+|+++++.+.+.|+++|.|++.....+|.+. ....+.++
T Consensus 128 ~a~i~i-srGC~~~CsFC~ip~~r--G~~--~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 128 KSLVNI-SIGCDKKCTYCIVPHTR--GKE--ISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred EEEEEe-cCCCCCCCCcCCccccc--CCC--CCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHH
Confidence 467788 99999999999877432 222 2369999999999999999999999875433333221 01235666
Q ss_pred HHHHhhc-CcE-EE---EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCe
Q 016605 165 VKDIRDM-GME-VC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GIN 234 (386)
Q Consensus 165 i~~ik~~-g~~-i~---~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~ 234 (386)
++.+.+. |+. +. .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.++.+++++.++++ |+.
T Consensus 203 l~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~ 282 (420)
T PRK14339 203 LDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVS 282 (420)
T ss_pred HHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCE
Confidence 6665542 332 21 23345789999999998 689999999999 99999999999999999999999998 788
Q ss_pred eeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 016605 235 VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 293 (386)
Q Consensus 235 v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~ 293 (386)
+.+++|+|+ |||++|+.++++++.+++ ++.+.++.|.|.|||++...+ .++.+...+
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~ 341 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEEVASE 341 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHHHHHH
Confidence 999999999 999999999999999996 788889999999999987654 455544333
|
|
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=184.54 Aligned_cols=199 Identities=15% Similarity=0.205 Sum_probs=155.0
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh--hhHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK--TNFNQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~--~~~~~l~~~i~ 166 (386)
..+.+ +.|||++|.||..+... +.. +..++++|+++++.+.+.|++.|.|.+.....+ +.. .....+.++++
T Consensus 149 ~~i~i-srGCp~~CsFC~~p~~~--G~~--~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 149 AFVSI-MEGCDKYCTFCVVPYTR--GEE--VSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred EEEEh-hhCCCCCCCccccCccc--CCc--ccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHH
Confidence 34566 89999999999876432 222 247999999999999999999998876443222 210 01124566666
Q ss_pred HHhhc-Cc---EEE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 016605 167 DIRDM-GM---EVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (386)
Q Consensus 167 ~ik~~-g~---~i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~ 236 (386)
.+.+. ++ ... .++..++++.++.|+++| +.++.+++|+. +++++.++++++.+++.++++.++++ |+.+.
T Consensus 224 ~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 224 LVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred HHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 65543 33 222 234557999999999985 89999999999 99999999999999999999999998 78899
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 295 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~ 295 (386)
+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ .++.+...+..
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~ 362 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKKERL 362 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHHHHH
Confidence 9999999 999999999999999996 889999999999999998765 45555444443
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-20 Score=177.18 Aligned_cols=239 Identities=21% Similarity=0.283 Sum_probs=176.0
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|..+.+. .+++ |+.||++|.||...............++.+++.+.++.+.+.|++.|.++| |||+..+++
T Consensus 5 ~gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltG------GEPll~~~l 76 (334)
T TIGR02666 5 FGRRIDYL-RISV-TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTG------GEPLLRKDL 76 (334)
T ss_pred CCCccCeE-EEEe-cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------ccccccCCH
Confidence 46666643 3566 999999999998763110112234469999999999999999999998876 456666778
Q ss_pred HHHHHHHhh-cCc-EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCe-e
Q 016605 162 LEYVKDIRD-MGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGIN-V 235 (386)
Q Consensus 162 ~~~i~~ik~-~g~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~-v 235 (386)
.++++.+++ .++ .+ .+|||.+..+.++.|+++|++.|++++|+. ++.|+.+.+ +.++++++++|+.++++|+. +
T Consensus 77 ~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v 156 (334)
T TIGR02666 77 VELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPV 156 (334)
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 888888876 467 54 467999888899999999999999999999 899999985 56999999999999999997 8
Q ss_pred eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC-CCCCCCCHHHHHHHHHHHH-HhCC---------C
Q 016605 236 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-QDQKPVEIWEMIRMIATAR-IVMP---------K 304 (386)
Q Consensus 236 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l-~~~~~~s~~e~~~~~a~~R-~~lp---------~ 304 (386)
.+++++..|.|.+++.++++++++++ + .+.+..|+|.++... ......+.+++++.++..- .+.+ .
T Consensus 157 ~in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~ 233 (334)
T TIGR02666 157 KLNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPA 233 (334)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCc
Confidence 88887766899999999999999996 4 478888999876532 2233456777666554321 1111 0
Q ss_pred ccee--ecC--cccccChhHHHhhhhcCcccc
Q 016605 305 AMVR--LSA--GRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 305 ~~i~--i~~--g~~~~~~~~~~~~l~~Gan~~ 332 (386)
..+. +.. +.+.+.... ...||.+||.+
T Consensus 234 ~~~~~~~~~~~~~ig~i~~~-s~~fC~~cnr~ 264 (334)
T TIGR02666 234 PAYRWRLPGGKGRIGFISPV-SDPFCGTCNRL 264 (334)
T ss_pred eeeeeecCCCCeEEEEEccC-CcccccccCEE
Confidence 1222 222 334444333 35689999987
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=183.65 Aligned_cols=199 Identities=17% Similarity=0.240 Sum_probs=153.2
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC-ChhhHHHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVK 166 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g-e~~~~~~l~~~i~ 166 (386)
....+++ +++||++|.||..+... + +.+..++++|+++++.+.+.|++.|.|++.....+| ++.....+.++++
T Consensus 138 ~~~~l~i-srGC~~~CsfC~~p~~~--g--~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~ 212 (440)
T PRK14334 138 LSAHLTI-MRGCNHHCTYCIVPTTR--G--PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLR 212 (440)
T ss_pred eEEEEEe-ccCCCCCCcCCCcchhc--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHH
Confidence 3456777 89999999999886432 2 123479999999999999999999988764322222 2112223445555
Q ss_pred HHhhcCc---EEE-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeE
Q 016605 167 DIRDMGM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCS 237 (386)
Q Consensus 167 ~ik~~g~---~i~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~--v~~ 237 (386)
.+++.++ .+. .++..++++.++.|+++ |+.++.+++|+. +++++.++++++.++++++++.++++|.. +++
T Consensus 213 ~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~ 292 (440)
T PRK14334 213 LVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLST 292 (440)
T ss_pred HHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 5544443 222 23445899999999995 599999999999 99999999999999999999999999754 788
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC-CCCCHHHHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-KPVEIWEMIR 293 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~-~~~s~~e~~~ 293 (386)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++... ...+.++..+
T Consensus 293 d~IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~ 348 (440)
T PRK14334 293 DIIVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVKTE 348 (440)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHHHH
Confidence 999999 999999999999999996 89999999999999998653 3455544433
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=182.90 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=154.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh---hHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT---NFNQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~---~~~~l~~~i~ 166 (386)
..+.+ +.|||++|.||..+... +. .+..++++|+++++.+.+.|+++|.|.+.....++... ....+.++++
T Consensus 154 ~~i~I-~rGC~~~CsfC~~p~~r--G~--~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 154 SFIPI-MNGCNNFCSYCIVPYVR--GR--EISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred EEEEh-hcCCCCCCCCCCcccCC--CC--CccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHH
Confidence 45667 89999999999876432 22 23479999999999999999999988775433222110 1123555555
Q ss_pred HHh----h-cCcE-E---EEecCCCCHHHHHHHHH--hccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--C
Q 016605 167 DIR----D-MGME-V---CCTLGMLEKHQAIELKK--AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--G 232 (386)
Q Consensus 167 ~ik----~-~g~~-i---~~t~g~l~~e~l~~Lk~--aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--G 232 (386)
.+. . .++. + ..++..++++.++.|++ +|+..+.+++|+. +++++.++++++.+++.++++.++++ |
T Consensus 229 ~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 229 HIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCC
Confidence 552 1 2332 2 23456689999999998 4899999999999 99999999999999999999999998 9
Q ss_pred CeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 016605 233 INVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 294 (386)
Q Consensus 233 i~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~ 294 (386)
+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ .++.+...+.
T Consensus 309 i~i~~d~IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R 370 (455)
T PRK14335 309 VALSTDILIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEVKIAR 370 (455)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHHHHHH
Confidence 99999999999 999999999999999996 899999999999999998754 3555444333
|
|
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=182.89 Aligned_cols=193 Identities=14% Similarity=0.199 Sum_probs=153.9
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
...+.+ +.|||++|+||..+.. .+ +++..++|+|+++++.+.+.|+++|.|.+.....++.. ...+.++++.+
T Consensus 155 ~a~l~i-srGC~~~CsFC~ip~~--rG--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~--~~~l~~Ll~~l 227 (449)
T PRK14332 155 QAFVTI-MRGCNNFCTFCVVPYT--RG--RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ--STDFAGLIQML 227 (449)
T ss_pred eEEEEe-cCCcCCCCCCCCcccc--cC--CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC--cccHHHHHHHH
Confidence 345677 9999999999987632 22 23557999999999999999999999987554444421 23466666665
Q ss_pred hhc-Cc---EEE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GM---EVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~---~i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++ ... .++..++++.++.|+++| +..+.+++|+. +++++.++++++.+++.++++.++++ |+.+.++
T Consensus 228 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td 307 (449)
T PRK14332 228 LDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTD 307 (449)
T ss_pred hcCCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 32 222 233457899999999998 89999999999 99999999999999999999999998 6788899
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC-CCC-CCCHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQK-PVEIWE 290 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~-~~~-~~s~~e 290 (386)
+|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||+.. ..+ .++.++
T Consensus 308 ~IvGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~~ 360 (449)
T PRK14332 308 IIVGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEEV 360 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHHH
Confidence 99999 999999999999999996 899999999999999986 332 344443
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=183.66 Aligned_cols=195 Identities=17% Similarity=0.239 Sum_probs=154.4
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChh--hHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT--NFNQILEYV 165 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~--~~~~l~~~i 165 (386)
...+.+ ++||+++|+||..+... + +.+..++++|+++++.+.+.|++++.+++.....+ |.+. ....+.+++
T Consensus 146 ~~~v~i-~rGC~~~CsfC~~~~~~--G--~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 146 KSFINI-MIGCNKFCTYCIVPYTR--G--DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred eEEeeh-hcCCCCCCCCCCeeeec--C--CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHH
Confidence 355677 89999999999876432 2 23457999999999999999999998876433333 2211 112455666
Q ss_pred HHHhh-cCcE-EE---EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCee
Q 016605 166 KDIRD-MGME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (386)
Q Consensus 166 ~~ik~-~g~~-i~---~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v 235 (386)
+.+.+ .++. +. .++..++++.++.|+++| +.++.+++|+. +++++.++++++.++++++++.++++ |+.+
T Consensus 221 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i 300 (438)
T TIGR01574 221 RELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI 300 (438)
T ss_pred HHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 66653 2432 22 235568999999999999 99999999999 99999999999999999999999987 7889
Q ss_pred eEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCC-CCHHH
Q 016605 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP-VEIWE 290 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~-~s~~e 290 (386)
.+++|+|+ |||++++.++++++.+++ ++.+.++.|.|.|||++...+. .+.+.
T Consensus 301 ~~d~IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 355 (438)
T TIGR01574 301 STDIIVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMPDQIPEEI 355 (438)
T ss_pred eeCEEEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCCCCCCHHH
Confidence 99999999 999999999999999996 8899999999999999987643 34443
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=181.57 Aligned_cols=195 Identities=14% Similarity=0.208 Sum_probs=155.0
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 167 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~ 167 (386)
...+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|+++|.+++.....+|.+. ..+.+.++++.
T Consensus 125 ~a~i~i-~rGC~~~CsFC~ip~~r--G--~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 199 (418)
T PRK14336 125 SANVTI-MQGCDNFCTYCVVPYRR--G--REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSA 199 (418)
T ss_pred EEEEEe-ccCCCCCCccCCccccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHH
Confidence 455677 89999999999876432 2 335589999999999999999999999876543344321 12346666666
Q ss_pred Hhhc-C---cEE-EEecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeE
Q 016605 168 IRDM-G---MEV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 237 (386)
Q Consensus 168 ik~~-g---~~i-~~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~ 237 (386)
+++. + +.+ ..++..++++.++.|+++ ++..+.+++|+. +++++.++++++.++..++++.++++ |+.+.+
T Consensus 200 l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~ 279 (418)
T PRK14336 200 LHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQT 279 (418)
T ss_pred HHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 6542 2 222 223445789999999985 599999999999 99999999999999999999999999 999999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC-C-CCCCHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-Q-KPVEIWE 290 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~-~-~~~s~~e 290 (386)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++.. . ..++.+.
T Consensus 280 d~IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~~~ 333 (418)
T PRK14336 280 DLIVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPVIE 333 (418)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCHHH
Confidence 999999 999999999999999996 8899999999999999873 3 3344433
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=183.01 Aligned_cols=186 Identities=12% Similarity=0.157 Sum_probs=148.5
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--h----hHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--T----NFNQILE 163 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--~----~~~~l~~ 163 (386)
..+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|+++|.|.+.....++-. . ....+.+
T Consensus 170 a~i~i-srGCp~~CsFC~ip~~~--G--~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 170 AFVSI-MRGCDNMCTFCVVPFTR--G--RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred EEEEe-ccCcccCCCCCcccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 45677 89999999999876432 2 34557999999999999999999998876432222211 0 1124666
Q ss_pred HHHHHhhc--CcEE--E-EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CC
Q 016605 164 YVKDIRDM--GMEV--C-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GI 233 (386)
Q Consensus 164 ~i~~ik~~--g~~i--~-~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi 233 (386)
+++.+.+. +..+ . .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.++..++++.++++ ++
T Consensus 245 Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~ 324 (467)
T PRK14329 245 LLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDC 324 (467)
T ss_pred HHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 66665532 2232 2 23455899999999987 899999999999 99999999999999999999999997 67
Q ss_pred eeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC
Q 016605 234 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (386)
Q Consensus 234 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~ 282 (386)
.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++..
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~ 372 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAAR 372 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhh
Confidence 7899999999 999999999999999996 8899999999999999874
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=182.78 Aligned_cols=186 Identities=15% Similarity=0.254 Sum_probs=147.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..+.+ +.|||++|.||..+... + +++..++++|+++++.+.+.|++.|.+.+.....+|.+. ....+.++++.+
T Consensus 142 ~~v~i-~rGC~~~CsFC~ip~~~--G--~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~ 216 (434)
T PRK14330 142 AWVTI-IYGCNRFCTYCIVPYTR--G--REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEA 216 (434)
T ss_pred EEEEc-ccCCCCCCCCCceECcC--C--CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHH
Confidence 45677 89999999999876432 2 234579999999999999999999988765433333111 112344455444
Q ss_pred hhc-CcE-EE---EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~~-i~---~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++. +. ..+..++++.++.|+++| +.++.+++|+. +++++.++++++.++..++++.+++. |+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 217 SKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred HhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 322 332 21 223457899999999988 78999999999 99999999999999999999999997 7889999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~ 282 (386)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++..
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 99999 999999999999999996 8999999999999999876
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=182.61 Aligned_cols=201 Identities=17% Similarity=0.211 Sum_probs=150.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|+.+|.||.+....... .......++.++++++.+.. .+++.|+++|| +|+.. ..+++.++++.+++
T Consensus 56 iPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGG-tP~~l---~~~~l~~ll~~i~~ 130 (455)
T TIGR00538 56 IPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGG-TPTYL---SPEQISRLMKLIRE 130 (455)
T ss_pred eCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCC-CcCCC---CHHHHHHHHHHHHH
Confidence 48999999999987542111 11111135666666665432 25677777665 44432 34556666665553
Q ss_pred c-----CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEe
Q 016605 171 M-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 241 (386)
Q Consensus 171 ~-----g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~ 241 (386)
. +.+ +.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.++..++++.++++|+. +++++|+
T Consensus 131 ~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (455)
T TIGR00538 131 NFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIY 210 (455)
T ss_pred hCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEe
Confidence 1 333 4566777999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC-CC----CCCCCCCHHHHHHHHHHHHHhCC
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PL----QDQKPVEIWEMIRMIATARIVMP 303 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT-~l----~~~~~~s~~e~~~~~a~~R~~lp 303 (386)
|+ |+|.+++.++++++.+++ ++++.++.+.+.|++ +. .....++.++..+++..+...+.
T Consensus 211 GlPgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 211 GLPKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred eCCCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 99 999999999999999996 899999999766643 22 22334678888888877765554
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=171.97 Aligned_cols=218 Identities=21% Similarity=0.276 Sum_probs=159.6
Q ss_pred HHhhcCCCeeEEEEeeeecCCCCCc--------CCCCCCCCCCCCCCCc--ccCCCCH-HHHHHHHHHHHHcCCcEEEEe
Q 016605 77 HRHAHNFREVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVK--GQKLMTK-DAVMQAAQKAKEAGSTRFCMG 145 (386)
Q Consensus 77 ~r~~~~g~~v~~~~~i~i~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~s~-eeI~~~~~~~~~~G~~~v~l~ 145 (386)
.|++ ||.+|+-.. ++. .-.||+ .|.||+..... .... ..+..+. ++|.+..+.....+...++|+
T Consensus 9 ~~~~-~g~~v~k~~-~~~-g~~cpnrdg~~~~~gC~FC~~~~~~-~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ 84 (302)
T TIGR01212 9 LKER-YGQKVFKIT-LHG-GFSCPNRDGTKGRGGCTFCNDASRP-IFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQ 84 (302)
T ss_pred HHHH-cCCceEEee-cCC-CCCCCCCCCCCCCCCcccCCCCCCc-cccccccccCCCHHHHHHHHHHHhhccCEEEEEEE
Confidence 4555 488888543 454 678998 59999876432 1110 0112343 444444444433333335666
Q ss_pred cccCCCCCChhhHHHHHHHHHHHhhc----CcEEEEecCCCCHHHHHHHH---Hhcc-CeeecccCch-HHHHhhhCCCC
Q 016605 146 AAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELK---KAGL-TAYNHNLDTS-REFYSKIITTR 216 (386)
Q Consensus 146 ~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~t~g~l~~e~l~~Lk---~aG~-~~v~i~le~~-~~~~~~i~~~~ 216 (386)
|| +++... .+.+.++++.+++. ++.+.+++..++++.++.|+ ++|+ .++.+++|++ +++++.+++++
T Consensus 85 gg-t~t~l~---~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~ 160 (302)
T TIGR01212 85 AY-TNTYAP---VEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGH 160 (302)
T ss_pred CC-CcCCCC---HHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcC
Confidence 55 566553 45666666666543 23345567778888777766 4599 5799999999 99999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCCHH
Q 016605 217 SYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIW 289 (386)
Q Consensus 217 s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s~~ 289 (386)
++++.+++++.++++|+.+++++|+|+ |||.+++.++++++.+++ ++.+.++.+.|.|||++.. ..+++.+
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~ 238 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLE 238 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHH
Confidence 999999999999999999999999999 999999999999999996 8999999999999999864 3667888
Q ss_pred HHHHHHHHHHHhCCC
Q 016605 290 EMIRMIATARIVMPK 304 (386)
Q Consensus 290 e~~~~~a~~R~~lp~ 304 (386)
+++..+..+...+|.
T Consensus 239 e~~~~~~~~l~~l~~ 253 (302)
T TIGR01212 239 EYISLACDFLEHLPP 253 (302)
T ss_pred HHHHHHHHHHHhCCc
Confidence 888887766666654
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=157.47 Aligned_cols=231 Identities=18% Similarity=0.327 Sum_probs=183.0
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD- 170 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~- 170 (386)
++++.+.|.++|.||+..-. .++-. .+.+++++...++.+.|...+.++||-.+. | ...+..+.+.++++|+
T Consensus 14 ISVTG~yC~lnC~HCg~~~L--~~Mi~---vt~~~l~k~~~el~kkGy~g~llSGGm~sr-g-~VPl~kf~d~lK~lke~ 86 (275)
T COG1856 14 ISVTGAYCSLNCPHCGRHYL--EHMIK---VTTKSLLKRCMELEKKGYEGCLLSGGMDSR-G-KVPLWKFKDELKALKER 86 (275)
T ss_pred EEEeccceEecChHHHHHHH--HHhcc---cchHHHHHHHHHHHhcCceeEEEeCCcCCC-C-CccHHHHHHHHHHHHHh
Confidence 34447899999999975321 11111 344788888888999999999888875443 3 3567889999999995
Q ss_pred cCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHH
Q 016605 171 MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE 248 (386)
Q Consensus 171 ~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~e 248 (386)
.|+.+..+.|..+++.++.||++++|.+++.+=+-+++.+.+.+ .++.++.++.++.+.+.|+.+..++++|+ .-..+
T Consensus 87 ~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~ 166 (275)
T COG1856 87 TGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIH 166 (275)
T ss_pred hCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCccc
Confidence 58888888999999999999999999999876554555555544 67899999999999999999999999999 44444
Q ss_pred HHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc--ccChhHHHhhhh
Q 016605 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV--RFSMPEQALCFL 326 (386)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~--~~~~~~~~~~l~ 326 (386)
.-.+.++.+.... ++.+.+..|+|.|||.|++.++++.+|..+.+..||..+|+ -+.+.+.+. ...-..+..+..
T Consensus 167 ~e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~ 243 (275)
T COG1856 167 GEFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVL 243 (275)
T ss_pred chHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHH
Confidence 4456678888774 89999999999999999999999999999999999999999 455554432 233355677888
Q ss_pred cCcccc
Q 016605 327 AGANSI 332 (386)
Q Consensus 327 ~Gan~~ 332 (386)
+|+|.+
T Consensus 244 ~gVd~I 249 (275)
T COG1856 244 AGVDRI 249 (275)
T ss_pred cCCcee
Confidence 999998
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=186.79 Aligned_cols=178 Identities=14% Similarity=0.174 Sum_probs=146.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
++. |+|||++|.||+.+... .+++..+++.|+++++.+.+ .|++.|.+... .++ ...+++.++++++.+
T Consensus 197 i~t-SRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd-~f~----~~~~~~~~l~~~l~~ 266 (497)
T TIGR02026 197 PNF-ARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADE-EPT----INRKKFQEFCEEIIA 266 (497)
T ss_pred eec-cCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEec-ccc----cCHHHHHHHHHHHHh
Confidence 455 99999999999876421 34666899999999998864 78888877653 222 234567777777764
Q ss_pred cC---cEE--EEecCC--CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 171 MG---MEV--CCTLGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 171 ~g---~~i--~~t~g~--l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
.+ +.. .+.... .+++.++.|+++|+.++.+|+|+. +++++.++++++.++..++++.++++||.+.+++|+|
T Consensus 267 ~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G 346 (497)
T TIGR02026 267 RNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG 346 (497)
T ss_pred cCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 43 332 222222 378999999999999999999999 9999999999999999999999999999999999999
Q ss_pred c-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC
Q 016605 243 L-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 281 (386)
Q Consensus 243 l-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~ 281 (386)
+ |||.+++.++++++.+++ ++++.++.+.|.|||++.
T Consensus 347 ~P~et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~ 384 (497)
T TIGR02026 347 FENETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLF 384 (497)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHH
Confidence 9 999999999999999996 889999999999999874
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=181.10 Aligned_cols=236 Identities=13% Similarity=0.121 Sum_probs=166.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCC-cccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGV-KGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~-~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|+.+|.||.|........ ......=.+.+.++++.... ..++.|+++|| +|+...+..+..+++.++..-.
T Consensus 26 IPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGG-TPs~L~~~~L~~ll~~i~~~~~ 104 (394)
T PRK08898 26 FPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGG-TPSLLSAAGLDRLLSDVRALLP 104 (394)
T ss_pred eCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCC-CcCCCCHHHHHHHHHHHHHhCC
Confidence 489999999999875421111 00000123555555554322 23567777665 5555444444555555544332
Q ss_pred c--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-C
Q 016605 171 M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G 244 (386)
Q Consensus 171 ~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-g 244 (386)
. ..+ +.++++.++.+.++.|+++|++++++++|++ +++++.+++.++.++..++++.+++.+..+++++|+|+ |
T Consensus 105 ~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPg 184 (394)
T PRK08898 105 LDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPG 184 (394)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCC
Confidence 2 123 5667888999999999999999999999999 99999999999999999999999998878999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC--CCCHHHHHHHHHHHHHhCCCc-ceeec------Ccccc
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMPKA-MVRLS------AGRVR 315 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~--~~s~~e~~~~~a~~R~~lp~~-~i~i~------~g~~~ 315 (386)
+|.+++...++.+.+++ ++++.++.|.|.|||++.... .++.++..++...+...|... +.+.. ++..+
T Consensus 185 qt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~~~fa~~~~~~ 262 (394)
T PRK08898 185 QTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYEVSAYAKPGRQC 262 (394)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhccccccCCCccc
Confidence 99999999999999996 899999999999999987532 356677777777777666432 22221 11111
Q ss_pred cC-----hhHHHhhhhcCcccccc
Q 016605 316 FS-----MPEQALCFLAGANSIFT 334 (386)
Q Consensus 316 ~~-----~~~~~~~l~~Gan~~~~ 334 (386)
.. ......+|++||.+.+.
T Consensus 263 ~hn~~~w~~~~~lg~G~gA~s~l~ 286 (394)
T PRK08898 263 RHNLNYWQFGDYLGIGAGAHGKLS 286 (394)
T ss_pred hhHHHHhCCCCEEEECCCeeeeec
Confidence 11 11235678888877654
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-20 Score=182.25 Aligned_cols=196 Identities=14% Similarity=0.232 Sum_probs=152.9
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh-HHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~i 168 (386)
..+.+ +.|||++|.||..+... + +.+..++++|+++++.+.+.|++.+.+.+.....+|.+.. ...+.++++.+
T Consensus 149 ~~i~i-~rGC~~~CsfC~~p~~~--g--~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 149 AFVTI-MYGCNNFCTYCIVPYVR--G--RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred EEEEH-HhCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHH
Confidence 45677 89999999999886432 2 2344799999999999999999999988754433332110 02344555555
Q ss_pred hhc-Cc---EEE-EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q 016605 169 RDM-GM---EVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 238 (386)
Q Consensus 169 k~~-g~---~i~-~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~ 238 (386)
.+. ++ .+. .++..++++.++.|+++| +.++.+++|+. +++++.++++++.++++++++.++++ ++.+.++
T Consensus 224 ~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 224 NEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred HhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 22 222 235558999999999986 89999999999 99999999999999999999999998 7778999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 292 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~ 292 (386)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||++...+ .++.+...
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~ 357 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPEDVKH 357 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHHHHH
Confidence 99999 999999999999999996 889999999999999988653 34444333
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=180.20 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=154.3
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-----------hhH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----------TNF 158 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-----------~~~ 158 (386)
..+.+ +.|||++|.||..+... + +++..++|+|+++++.+.+.|+++|.+.+.+...+|.+ ...
T Consensus 141 a~v~i-srGCp~~CsFC~ip~~~--G--~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~ 215 (440)
T PRK14862 141 AYLKI-SEGCNHRCTFCIIPSMR--G--DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVK 215 (440)
T ss_pred EEEEe-ccCCCCCCccCCccccc--C--CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchh
Confidence 44667 99999999999876432 2 24558999999999999999999998875432222211 114
Q ss_pred HHHHHHHHHHhhcCcE--EE-EecCCCCHHHHHHHHHhccC--eeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 016605 159 NQILEYVKDIRDMGME--VC-CTLGMLEKHQAIELKKAGLT--AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~~--i~-~t~g~l~~e~l~~Lk~aG~~--~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~- 231 (386)
+++.++++.+.+.++. +. +.+...+++.++.|++ |.. .+.+++|+. +++++.++++.++++.+++++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 5788888888766653 21 2233367899999998 654 678899999 99999999988999999999999996
Q ss_pred -CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 016605 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 295 (386)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~~ 295 (386)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||+....+ .++.++..+..
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~ 359 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEERW 359 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHHH
Confidence 788899999998 999999999999999996 889999999999999975432 45665544443
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=179.78 Aligned_cols=206 Identities=14% Similarity=0.157 Sum_probs=148.8
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCChhhHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEY 164 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-----~G~~~v~l~~g~~~~~ge~~~~~~l~~~ 164 (386)
..|++ ++|+.+|.||.+............ .-.+.++++++.... .++..++++|| +|+...+ +++.++
T Consensus 53 LYvHI--PfC~~~C~yC~~~~~~~~~~~~~~-~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGG-TPs~l~~---~~l~~l 125 (453)
T PRK13347 53 LYLHV--PFCRSLCWFCGCNTIITQRDAPVE-AYVAALIREIRLVAASLPQRRRVSQLHWGGG-TPTILNP---DQFERL 125 (453)
T ss_pred EEEEe--CCccccCCCCCCcCcCccccchHH-HHHHHHHHHHHHHHHhcCCCCeEEEEEEcCc-ccccCCH---HHHHHH
Confidence 33454 789999999998753211100000 013455555544332 24556666654 4443333 555555
Q ss_pred HHHHhhc-----CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-e
Q 016605 165 VKDIRDM-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-V 235 (386)
Q Consensus 165 i~~ik~~-----g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v 235 (386)
++.+++. +.+ +.+++..++++.++.|+++|++++++|+|++ +++++.+++.++.+++.++++.++++|+. +
T Consensus 126 l~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v 205 (453)
T PRK13347 126 MAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESI 205 (453)
T ss_pred HHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcE
Confidence 5555431 234 4566778999999999999999999999999 99999999999999999999999999997 9
Q ss_pred eEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC-----CCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-----LQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~-----l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
++++|+|+ |+|.+++.++++++.+++ ++++.++.|...|+.. ......++.++..+++..+...|..
T Consensus 206 ~~dli~GlPgqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~ 278 (453)
T PRK13347 206 NFDLIYGLPHQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLA 278 (453)
T ss_pred EEeEEEeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999996 8999999987555322 1233456778878888777666543
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=171.72 Aligned_cols=237 Identities=20% Similarity=0.256 Sum_probs=172.7
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l 161 (386)
+|.++... .+++ |++||++|.||...... ......++.|++.+.++.+...|++.|.++| |||+..+++
T Consensus 5 ~gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~---~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l 73 (302)
T TIGR02668 5 FGRPVTSL-RISV-TDRCNLSCFYCHMEGED---RSGGNELSPEEIERIVRVASEFGVRKVKITG------GEPLLRKDL 73 (302)
T ss_pred CCCccCeE-EEEE-cccccCCCCCCCccccC---CCccCcCCHHHHHHHHHHHHHcCCCEEEEEC------cccccccCH
Confidence 46666543 4566 99999999999875321 1223459999999999988889999998876 456667778
Q ss_pred HHHHHHHhhcCc-EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeE
Q 016605 162 LEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 237 (386)
Q Consensus 162 ~~~i~~ik~~g~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~ 237 (386)
.++++.+++.++ .+ .+|||.+..+.+..|+++|+++|++++|+. ++.|+.+.+..++++++++++.+.++|+. +.+
T Consensus 74 ~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i 153 (302)
T TIGR02668 74 IEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKL 153 (302)
T ss_pred HHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 889998887777 44 567898778899999999999999999999 89999998888999999999999999996 888
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC-CCCCCCCCCCHHHHHHHHHHHHHhCCC------cceeec
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG-TPLQDQKPVEIWEMIRMIATARIVMPK------AMVRLS 310 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g-T~l~~~~~~s~~e~~~~~a~~R~~lp~------~~i~i~ 310 (386)
.+++-.|++.+++.++++++++++ + .+.+..++|... .........+..++...+...-..... ..+.+.
T Consensus 154 ~~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T TIGR02668 154 NMVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMADRVRTRRMHNRPKYFIP 230 (302)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCCCccchhhceecHHHHHHHHHHhcccccccCCCCCcEEEeC
Confidence 877755899999999999999996 4 478888888763 222222234555555544322111110 111122
Q ss_pred C-cccccChhHHHhhhhcCcccc
Q 016605 311 A-GRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 311 ~-g~~~~~~~~~~~~l~~Gan~~ 332 (386)
. +.+++........|+.+||.+
T Consensus 231 ~~~~~g~i~~~~~~~fC~~c~r~ 253 (302)
T TIGR02668 231 GGVEVEVVKPMDNPVFCAHCTRL 253 (302)
T ss_pred CCeEEEEECccCCCCccccCCeE
Confidence 2 344444443221588999988
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=178.43 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=154.3
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh--hHHHHHHHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVK 166 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~--~~~~l~~~i~ 166 (386)
...+.+ +.|||++|+||..+... + +++..++++|+++++.+.+.|+++|.|++.....+|.+. ....+.++++
T Consensus 149 ~a~v~i-~rGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~ 223 (446)
T PRK14337 149 SAFVNI-MQGCDNFCAYCIVPYTR--G--RQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLH 223 (446)
T ss_pred EEEEEe-ccCCCCCCcCCCcccCC--C--CCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHH
Confidence 456777 89999999999876321 2 234579999999999999999999999774433233211 0124555555
Q ss_pred HHhhc-Cc---EE-EEecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 016605 167 DIRDM-GM---EV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 236 (386)
Q Consensus 167 ~ik~~-g~---~i-~~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~ 236 (386)
.+.+. ++ .+ ..++..++++.++.|++. |+.++.+++|+. +++++.++++++.+++.++++.+++. |+.+.
T Consensus 224 ~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~ 303 (446)
T PRK14337 224 KVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALT 303 (446)
T ss_pred HHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 55442 33 22 223455789999999984 689999999999 99999999999999999999999998 68899
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 293 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~ 293 (386)
+++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||+....+ .++.+...+
T Consensus 304 ~d~IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~ 360 (446)
T PRK14337 304 TDLIVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEEVKSA 360 (446)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHHHHHH
Confidence 9999999 999999999999999996 889999999999999987764 355544333
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=178.00 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=147.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-----cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|+.+|.||.+....... .......++.+.++++...+ .++..++++|| +|+... .+++.++++.+++
T Consensus 56 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGG-tPs~l~---~~~l~~ll~~l~~ 130 (453)
T PRK09249 56 IPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGG-TPTFLS---PEQLRRLMALLRE 130 (453)
T ss_pred eCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCc-ccccCC---HHHHHHHHHHHHH
Confidence 47999999999987532111 11110124555555554333 24666777664 454433 3555555555543
Q ss_pred c-----CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eeeEeEEe
Q 016605 171 M-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSGGII 241 (386)
Q Consensus 171 ~-----g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-~v~~~~i~ 241 (386)
. +.+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.++.+++++.++++|+ .+++++|+
T Consensus 131 ~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~ 210 (453)
T PRK09249 131 HFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIY 210 (453)
T ss_pred hCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 2 334 4566777999999999999999999999999 9999999999999999999999999999 69999999
Q ss_pred ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC-----CCCCCCCHHHHHHHHHHHHHhCC
Q 016605 242 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-----QDQKPVEIWEMIRMIATARIVMP 303 (386)
Q Consensus 242 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l-----~~~~~~s~~e~~~~~a~~R~~lp 303 (386)
|+ |+|.+++.++++++.+++ ++++.++.+.+.|+... .....++.++..+++..+...+.
T Consensus 211 GlPgqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 276 (453)
T PRK09249 211 GLPKQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLT 276 (453)
T ss_pred cCCCCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 99 999999999999999996 89999999986554311 12234677888888877666553
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=179.82 Aligned_cols=198 Identities=16% Similarity=0.247 Sum_probs=153.7
Q ss_pred EEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC------h--hhHHH
Q 016605 89 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------K--TNFNQ 160 (386)
Q Consensus 89 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge------~--~~~~~ 160 (386)
...+.+ +.|||++|.||.++... +. .+..++++|+++++.+.+.|++.+.+++.....+|. | .....
T Consensus 149 ~a~i~i-~~GC~~~CsFC~ip~~r--G~--~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~ 223 (448)
T PRK14333 149 TAWVNV-IYGCNERCTYCVVPSVR--GK--EQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHT 223 (448)
T ss_pred eEEEEh-hcCCCCCCCCCceeccc--CC--CcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCcccccccccc
Confidence 345677 89999999999876432 22 234789999999999999999999887632222211 1 01235
Q ss_pred HHHHHHHHhhc-CcE-EE---EecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 016605 161 ILEYVKDIRDM-GME-VC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 231 (386)
Q Consensus 161 l~~~i~~ik~~-g~~-i~---~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~- 231 (386)
+.++++.+.+. ++. +. .++..++++.++.|+++ |+..+.+++|+. +++++.++++++.+++.++++.++++
T Consensus 224 l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~ 303 (448)
T PRK14333 224 LTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYM 303 (448)
T ss_pred HHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 66666666543 332 32 23455789999999986 589999999999 99999999999999999999999999
Q ss_pred -CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 016605 232 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 293 (386)
Q Consensus 232 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~ 293 (386)
|+.+.+++|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+ ..+.+...+
T Consensus 304 p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~ 366 (448)
T PRK14333 304 PDASISADAIVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEVKSD 366 (448)
T ss_pred CCcEEEeeEEEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHHHHH
Confidence 778999999999 999999999999999996 899999999999999987643 345544333
|
|
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=171.62 Aligned_cols=189 Identities=14% Similarity=0.290 Sum_probs=153.0
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh--HHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYV 165 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~--~~~l~~~i 165 (386)
..+.+.| ..||+.+|+||..+.. .+.. +..++++|+++++.+.+.|+++|.+.|-....+|.+.. ...+.+++
T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~--RG~~--rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437)
T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA--RGKE--RSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437)
T ss_pred eEEEEEh-hcCcCCCCCeeeeecc--CCCc--cCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHH
Confidence 4456778 8999999999987643 3333 34699999999999999999999998766666665533 24566666
Q ss_pred HHHhhc-CcE-E---EEecCCCCHHHHHHHHHh--ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCee
Q 016605 166 KDIRDM-GME-V---CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINV 235 (386)
Q Consensus 166 ~~ik~~-g~~-i---~~t~g~l~~e~l~~Lk~a--G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v 235 (386)
+.+-+. |+. + ..++-.++++.++.+++. =+..+.+.+|+. +++++.++++++.++.++.++.++++ ++.+
T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred HHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceE
Confidence 666543 333 2 233455889999999874 266778899999 99999999999999999999999876 6779
Q ss_pred eEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC
Q 016605 236 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~ 283 (386)
.+++|+|+ |||++|+.++++++++.+ ++.+.++.|.|.||||-...
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~ 345 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALM 345 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccC
Confidence 99999999 999999999999999996 89999999999999997643
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=168.36 Aligned_cols=176 Identities=16% Similarity=0.309 Sum_probs=145.7
Q ss_pred EEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 87 QQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 87 ~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
.+...+++ |+.||++|.||+..... . .....++.+++.+.++++.+.|+..|.++| |||+.++++.++++
T Consensus 15 P~~l~i~i-T~~CNl~C~~C~~~~~~-~--~~~~~~~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~il~ 84 (378)
T PRK05301 15 PLWLLAEL-TYRCPLQCPYCSNPLDL-A--RHGAELSTEEWIRVLREARALGALQLHFSG------GEPLLRKDLEELVA 84 (378)
T ss_pred CeEEEEEe-cCccCcCCCCCCCcccc-c--cccCCCCHHHHHHHHHHHHHcCCcEEEEEC------CccCCchhHHHHHH
Confidence 34455777 99999999999865321 1 123458999999999999999988888876 46777788999999
Q ss_pred HHhhcCcEE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 167 DIRDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 167 ~ik~~g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
.+++.++.+ .+|||. ++++.++.|+++|++.|.+++|+. ++.++.+++.. ++++++++++.+++.|+.+.+.+++
T Consensus 85 ~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv- 163 (378)
T PRK05301 85 HARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI- 163 (378)
T ss_pred HHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-
Confidence 999878763 567886 789999999999999999999999 89999998764 8999999999999999998877765
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
...+.+++.++++++.+++ ++.+.+..+.+.
T Consensus 164 ~~~N~~~i~~~~~~~~~lg--v~~i~~~~~~~~ 194 (378)
T PRK05301 164 HRHNIDQIPRIIELAVELG--ADRLELANTQYY 194 (378)
T ss_pred ecCCHHHHHHHHHHHHHcC--CCEEEEeccccc
Confidence 4789999999999999997 778877665554
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=170.48 Aligned_cols=233 Identities=18% Similarity=0.237 Sum_probs=173.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-----CCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
-++|...|.||.|+........... .=.+-+.++++..... .++.|+++| |+|+...+..++.+++.|+..-.
T Consensus 41 iPFC~~~C~YC~fn~~~~~~~~~~~-~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GG-GTPslL~~~~l~~ll~~l~~~~~ 118 (416)
T COG0635 41 IPFCVSKCPYCDFNSHVTKRGQPVD-EYLDALLEEIELVAALLGGQREVKTIYFGG-GTPSLLSPEQLERLLKALRELFN 118 (416)
T ss_pred cccccccCCCCCCeeeccCCCChHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEECC-CccccCCHHHHHHHHHHHHHhcc
Confidence 5899999999999865322110000 0022333333333322 245566655 46777777777888888876652
Q ss_pred -c--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec
Q 016605 171 -M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 243 (386)
Q Consensus 171 -~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 243 (386)
. ..+ +.++++.++.+.++.|+++|++++++|+|++ +++++.+.+.|+.++..++++.+++.|+. +++++|||+
T Consensus 119 ~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl 198 (416)
T COG0635 119 DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL 198 (416)
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 2 244 5678899999999999999999999999999 99999999999999999999999999997 999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC-----CCCCHHHHHHHHHHHHHhCCCc-c--eeec----
Q 016605 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-----KPVEIWEMIRMIATARIVMPKA-M--VRLS---- 310 (386)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~-----~~~s~~e~~~~~a~~R~~lp~~-~--i~i~---- 310 (386)
++|.+++.+.++.+.+++ |++++++.|+-.|+|++... ..|+.++...+...+...+-+. + +.++
T Consensus 199 P~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yeisnfa~ 276 (416)
T COG0635 199 PGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEISNFAK 276 (416)
T ss_pred CCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEeechhcC
Confidence 999999999999999996 99999999999999987542 2467777777777776655432 2 2222
Q ss_pred ---------CcccccChhHHHhhhhcCccccccCC
Q 016605 311 ---------AGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 311 ---------~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.+|.. . ..+++++||.+.+.+.
T Consensus 277 ~~~e~~hNl~yw~~---~-~~lGiG~gA~g~~~~~ 307 (416)
T COG0635 277 PGGECRHNLQYWET---K-DYLGIGAGAHGRIGGT 307 (416)
T ss_pred cchHHHhhhccccC---C-CeEEECCCceeeeccE
Confidence 12222 2 5778888888876663
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=165.95 Aligned_cols=206 Identities=17% Similarity=0.288 Sum_probs=162.6
Q ss_pred CCCCC-cCCCCCCCCCC------CCCCC-------cccCCCCHHHHHHHHHHHHHcC--CcEE--EEecccCCCCCChhh
Q 016605 96 TGGCS-EDCSYCPQSSR------YDTGV-------KGQKLMTKDAVMQAAQKAKEAG--STRF--CMGAAWRDTIGRKTN 157 (386)
Q Consensus 96 t~~C~-~~C~fC~~~~~------~~~~~-------~~~~~~s~eeI~~~~~~~~~~G--~~~v--~l~~g~~~~~ge~~~ 157 (386)
...|| .+|.||+..-. +..+. .+++.-+..++...++++...| ++.| .+. ||+.+.-....
T Consensus 75 p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~-GGTft~l~~~y 153 (522)
T TIGR01211 75 PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIM-GGTFPARDLDY 153 (522)
T ss_pred CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEE-CCCcccCCHHH
Confidence 45799 58999975211 11111 1234468899999999999876 3334 444 44566554455
Q ss_pred HHHHHHHHHHHh-h-------------------------cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHh
Q 016605 158 FNQILEYVKDIR-D-------------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYS 210 (386)
Q Consensus 158 ~~~l~~~i~~ik-~-------------------------~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~ 210 (386)
.+++++.+.... . .++.+.+.+..++++.++.|+++|+++|.+|+|++ +++++
T Consensus 154 ~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~ 233 (522)
T TIGR01211 154 QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILE 233 (522)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 566666554432 1 12334566788999999999999999999999999 99999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhc---CCCCCCeEeeeeeeecCCCCCCC----
Q 016605 211 KIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLAT---LPTHPESVPINALLAVKGTPLQD---- 282 (386)
Q Consensus 211 ~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~---l~~~~~~v~~~~f~P~~gT~l~~---- 282 (386)
.++++++.+++.++++.++++|+.+++++|+|+ |+|.++..++++.+.+ ++ ++.+.++++.+.+||++..
T Consensus 234 ~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V~~gT~L~~~~~~ 311 (522)
T TIGR01211 234 RTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLVTRGTELYELWKR 311 (522)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEecceeeCCCHHHHHHHc
Confidence 999999999999999999999999999999999 9999999999999874 74 9999999999999999853
Q ss_pred --CCCCCHHHHHHHHHHHHHhCCC
Q 016605 283 --QKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 283 --~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
..+++.++++++++.+...+|.
T Consensus 312 G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 312 GEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCc
Confidence 5678999999999999888885
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-18 Score=160.78 Aligned_cols=218 Identities=17% Similarity=0.215 Sum_probs=162.3
Q ss_pred ChHHHHHHHHHHHHhhcCCCeeE-EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEE
Q 016605 65 PVLDLLFHGAQVHRHAHNFREVQ-QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 143 (386)
Q Consensus 65 ~~~~~l~~aa~~~r~~~~g~~v~-~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~ 143 (386)
|....+..++.+.+++..+.+-+ +...+++ |..||++|.||+..... .. .....++.|++.+.++ +.|+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Pl~l~le~-T~~CNL~C~~C~~~~~~-~~-~~~~~ls~ee~~~~i~---e~g~~~V~ 77 (318)
T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYP-AE-ILKQRLSVEECLRAVD---ECGAPVVS 77 (318)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEec-ccccCcCCcCCCCCcCC-Cc-ccccCCCHHHHHHHHH---HcCCCEEE
Confidence 44455666777778777665443 4555777 99999999999865322 11 1123489999887655 46887777
Q ss_pred EecccCCCCCChhhHHHHHHHHHHHhhcCcE-EEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHH
Q 016605 144 MGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDER 221 (386)
Q Consensus 144 l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~ 221 (386)
+.| |||+.++++.++++.+++.++. ..+|||.+..+.+..++++|...+.+++|+.++.++.++. ..+++.+
T Consensus 78 i~G------GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~ 151 (318)
T TIGR03470 78 IPG------GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRA 151 (318)
T ss_pred EeC------ccccccccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHH
Confidence 765 5787888899999999877766 3568998777789999999999999999999777877643 5689999
Q ss_pred HHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHH
Q 016605 222 LETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIAT 297 (386)
Q Consensus 222 l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~ 297 (386)
+++|+.++++|+.+.+.+++-.+++.+++.++++++.++| ++.+.+.+..|....+-.+ ..++.++..+++..
T Consensus 152 l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lG--v~~i~i~p~~~~~~a~~~~-~~l~~~e~~~~~~~ 224 (318)
T TIGR03470 152 VEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLG--VDGMTISPGYAYEKAPDQD-HFLGRRQTKKLFRE 224 (318)
T ss_pred HHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCcccccccccc-cccCHHHHHHHHHH
Confidence 9999999999999888776634789999999999999997 7788887766654333221 23455665555443
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=169.34 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=170.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-C
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-G 172 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G--~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g 172 (386)
-++|+.+|.||.|..... ...... .-.+.+.++++.+.+.| +..++++|| +|+.. + +++.++++.+++. .
T Consensus 59 IPFC~~~C~yC~f~~~~~-~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGG-TPs~l-~---~~L~~ll~~i~~~f~ 131 (433)
T PRK08629 59 VPFCHTLCPYCSFHRFYF-KEDKAR-AYFISLRKEMEMVKELGYDFESMYVGGG-TTTIL-E---DELAKTLELAKKLFS 131 (433)
T ss_pred eCCccCcCCCCCCcCcCC-CcchHH-HHHHHHHHHHHHHHhcCCceEEEEECCC-ccccC-H---HHHHHHHHHHHHhCC
Confidence 489999999999975321 111110 12567777777666544 455666554 55543 3 4444445545432 2
Q ss_pred ---cEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHH---HHHHHHHHHcCCeeeEeEEeec-C
Q 016605 173 ---MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDER---LETLKHVREAGINVCSGGIIGL-G 244 (386)
Q Consensus 173 ---~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~---l~~i~~a~~~Gi~v~~~~i~Gl-g 244 (386)
+.+.+++..++++.++.|+++ ++++++|+|++ +++++.+++.++.... ++.++.+++.+..+++++|+|+ |
T Consensus 132 i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPg 210 (433)
T PRK08629 132 IKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPG 210 (433)
T ss_pred CceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCC
Confidence 335577888999999999999 99999999999 9999999998876444 5555555544446899999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC---CCCCCHHHHHHHHHHHHHhCCCcceeecCc------c--
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD---QKPVEIWEMIRMIATARIVMPKAMVRLSAG------R-- 313 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~---~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g------~-- 313 (386)
||.+++.+.++++.+++ ++++.++++.+.|+|.... ...++.++..++...+..++. .+.+++.. .
T Consensus 211 qT~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f~~~~~~~ 287 (433)
T PRK08629 211 QTDEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAFSKKNDEG 287 (433)
T ss_pred CCHHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEecccccCCCCchh
Confidence 99999999999999996 9999999999999997432 234566666778888887776 45454321 0
Q ss_pred -ccc-ChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcC
Q 016605 314 -VRF-SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 361 (386)
Q Consensus 314 -~~~-~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~ 361 (386)
..+ ....++.+|++||.+.+.|.++... .+.++-.+.+++ |--|+
T Consensus 288 ~~~y~~~~~~ylGlG~gA~s~~~~~~~~N~--~~l~~Y~~~i~~-g~~pv 334 (433)
T PRK08629 288 FDEYVIDYDEYLGVGSGSFSFLDGTLYVNT--FSLRDYQERIAA-GQMGV 334 (433)
T ss_pred hceeeccCCeEEEEcCCeeEecCCeEEEcC--CCHHHHHHHHHc-CCCCe
Confidence 111 1234577888999887766543322 234444444443 43443
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-18 Score=164.08 Aligned_cols=175 Identities=17% Similarity=0.292 Sum_probs=143.4
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
+...+++ |+.||++|.||+..... . .....++.+++.+.++++.+.|+..|.++| |||+.++++.++++.
T Consensus 7 ~~l~iei-T~~CNl~C~~C~~~~~~--~-~~~~~l~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~ii~~ 76 (358)
T TIGR02109 7 LWLLAEL-THRCPLQCPYCSNPLEL--A-RRKAELTTEEWTDVLTQAAELGVLQLHFSG------GEPLARPDLVELVAH 76 (358)
T ss_pred cEEEEee-ccccCcCCCCCCCChhc--c-cccCCCCHHHHHHHHHHHHhcCCcEEEEeC------ccccccccHHHHHHH
Confidence 3345677 99999999999865321 1 123358999999999999999998888876 467677788999999
Q ss_pred HhhcCcEE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 168 IRDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 168 ik~~g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
+++.++.+ .+|||. ++++.++.|+++|++.|.+++|+. ++.++++++. .+++.++++++.++++|+.+.+.+++ .
T Consensus 77 ~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~ 155 (358)
T TIGR02109 77 ARRLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-H 155 (358)
T ss_pred HHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-c
Confidence 99888763 567886 789999999999999999999999 8999998764 48999999999999999988776665 4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+|.+++.++++++.+++ ++.+.+....+.
T Consensus 156 ~~N~~~l~~~~~~~~~lg--~~~i~~~~~~~~ 185 (358)
T TIGR02109 156 RHNIDQIPEIIELAIELG--ADRVELATTQYY 185 (358)
T ss_pred cCCHHHHHHHHHHHHHcC--CCEEEEEeeecc
Confidence 789999999999999997 777777655443
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=149.50 Aligned_cols=190 Identities=29% Similarity=0.502 Sum_probs=143.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--Cc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~ 173 (386)
|++|+++|.||+........ .......+++.+.+......+...+.++|| +|.....+.++++.+++. ++
T Consensus 4 ~~~C~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~gg------ep~~~~~~~~~i~~~~~~~~~~ 75 (204)
T cd01335 4 TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGG------EPLLYPELAELLRRLKKELPGF 75 (204)
T ss_pred CCccCCcCCCCCCCCCCCCC--ccccccHHHHHHHHHHHHhcCceEEEEeCC------cCCccHhHHHHHHHHHhhCCCc
Confidence 89999999999987543111 111112146666666666677777777553 343444788888888865 55
Q ss_pred EE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhC-CCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHH
Q 016605 174 EV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE 248 (386)
Q Consensus 174 ~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~-~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~e 248 (386)
.+ ..|++. ++++.++.|+++|++.+.+++|+. +..+..++ +..++++++++++.+++.|+.+.+.+++|. +++.+
T Consensus 76 ~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~ 155 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE 155 (204)
T ss_pred eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhH
Confidence 54 334554 489999999999999999999999 88888887 677999999999999999999999999999 55568
Q ss_pred HHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC-CCCCCCHHHHHHH
Q 016605 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQKPVEIWEMIRM 294 (386)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~-~~~~~s~~e~~~~ 294 (386)
++.++++++.++. .+..+.+..|.|.|||++. ..+..+.....++
T Consensus 156 ~~~~~~~~l~~~~-~~~~~~~~~~~p~~~t~~~~~~~~~~~~~~~~~ 201 (204)
T cd01335 156 DDLEELELLAEFR-SPDRVSLFRLLPEEGTPLELAAPVVPAEKLLRL 201 (204)
T ss_pred HHHHHHHHHHhhc-CcchhhhhhhcccCCCeeeeccccccHHHHHHH
Confidence 9999999998874 2788999999999999987 2233344444433
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-18 Score=149.69 Aligned_cols=196 Identities=22% Similarity=0.346 Sum_probs=159.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---- 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~---- 171 (386)
+..|..+|.||.... +.+ ..++++|-.+.++..+..|.+.++|++..++.+. +..-..+.+.|++||+.
T Consensus 77 G~~CTR~C~FC~V~~----g~P--~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~~P~t 149 (306)
T COG0320 77 GDICTRRCRFCDVKT----GRP--NPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIRELNPQT 149 (306)
T ss_pred cchhccCCCccccCC----CCC--CCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhhCCCc
Confidence 789999999998863 222 2378999999999999999999999988766542 33456788888888865
Q ss_pred CcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcC--CeeeEeEEeecCCCHHH
Q 016605 172 GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEED 249 (386)
Q Consensus 172 g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed 249 (386)
.+++.+..-.-.+..++.+.++|.|.+++++|+.+++|..++++.+|++.++.++.+++.+ +.+.+++|+|+|||.+|
T Consensus 150 ~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~E 229 (306)
T COG0320 150 TIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEE 229 (306)
T ss_pred eEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHH
Confidence 3455554333479999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 250 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.+.++.+++.+ ++.+.+..|.--...-+.-....+++++..+-.++..
T Consensus 230 v~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~ 278 (306)
T COG0320 230 VIEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEE 278 (306)
T ss_pred HHHHHHHHHHcC--CCEEEeccccCCccccCCceeccCHHHHHHHHHHHHH
Confidence 999999999996 8899998876422222333345788887777666654
|
|
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=145.52 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=142.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC---CcEEEEecccCCCCCChhhHHH-HHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G---~~~v~l~~g~~~~~ge~~~~~~-l~~~i~~ik~~ 171 (386)
|.+||++|.||...... .......++++++++.+..+.... ...|.++| |||+...+ +.++++.+++.
T Consensus 22 ~~gCnl~C~~C~~~~~~--~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G------GEPll~~~~~~~li~~~~~~ 93 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTW--DLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG------GEPLLQPEFLSELFKACKEL 93 (235)
T ss_pred ECCCCCcCCCCCChhhc--cCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC------cccccCHHHHHHHHHHHHHC
Confidence 78999999999865321 112224589999999888766532 24577765 45655544 56899999888
Q ss_pred CcEE-EEecCCCC--HHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CC
Q 016605 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GE 245 (386)
Q Consensus 172 g~~i-~~t~g~l~--~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--ge 245 (386)
|+.+ ..|||.+. .+.+.++.+ .++.+.+++++. ++.|+++++. ++++++++++.+++.|+.+.+.+++.. .+
T Consensus 94 g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~ 171 (235)
T TIGR02493 94 GIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTD 171 (235)
T ss_pred CCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCC
Confidence 8763 56888643 566666665 478899999999 8999988755 899999999999999998766655544 56
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecC---------CCCCCCCCCCCHHHHHHHHHHHH
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVK---------GTPLQDQKPVEIWEMIRMIATAR 299 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~---------gT~l~~~~~~s~~e~~~~~a~~R 299 (386)
+.+++.++++++.+++. +..+.+.+|.|.. ..++.+.++++.+++.+..++++
T Consensus 172 n~~ei~~l~~~~~~l~~-~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T TIGR02493 172 SEEDIEALAEFVKTLPN-VERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFK 233 (235)
T ss_pred CHHHHHHHHHHHHhCCC-CceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHh
Confidence 88999999999999972 5677888887753 33455667788888877777665
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=141.37 Aligned_cols=156 Identities=25% Similarity=0.444 Sum_probs=118.8
Q ss_pred eecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 93 SIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 93 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~-~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
++ |++||++|.||...... .......++++++++.++.+ ...|...+.++| |+|...+.+.+.+..+.+.
T Consensus 2 ~~-~~~C~~~C~fC~~~~~~--~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~------gep~~~~~~~~~~~~~~~~ 72 (166)
T PF04055_consen 2 ET-TRGCNLNCSFCYYPRSR--RKNKPREMSPEEILEEIKELKQDKGVKEIFFGG------GEPTLHPDFIELLELLRKI 72 (166)
T ss_dssp EE-ESEESS--TTTSTTTTC--CTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES------STGGGSCHHHHHHHHHHHC
T ss_pred EE-CcCcCccCCCCCCCccC--CCcccccCCHHHHHHHHHHHhHhcCCcEEEEee------cCCCcchhHHHHHHHHHHh
Confidence 45 89999999999887531 12233458999999999999 578855555554 3455555666666665533
Q ss_pred ---CcEE-EEecCCC-CHHHHHHHHHhccCeeecccCch-HH-HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-
Q 016605 172 ---GMEV-CCTLGML-EKHQAIELKKAGLTAYNHNLDTS-RE-FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL- 243 (386)
Q Consensus 172 ---g~~i-~~t~g~l-~~e~l~~Lk~aG~~~v~i~le~~-~~-~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl- 243 (386)
++.+ ..++|.. +++.++.|+++|++.+.+++++. ++ +++.+++++++++++++++.++++|+.....+++|+
T Consensus 73 ~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~ 152 (166)
T PF04055_consen 73 KKRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLP 152 (166)
T ss_dssp TCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBT
T ss_pred hccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeC
Confidence 5564 3456654 59999999999999999999999 87 888888888999999999999999998555555556
Q ss_pred CCCHHHHHHHHHHH
Q 016605 244 GEAEEDRVGLLHTL 257 (386)
Q Consensus 244 get~ed~~~~l~~l 257 (386)
|+|++|+.++++++
T Consensus 153 ~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 153 GENDEEIEETIRFI 166 (166)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcC
Confidence 99999999999885
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=156.26 Aligned_cols=205 Identities=16% Similarity=0.249 Sum_probs=154.9
Q ss_pred eeecCCCCCcCCCCCCCCCC-CCCCC--cccCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCChhh-HHHHHHHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSR-YDTGV--KGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTN-FNQILEYV 165 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~-~~~~~--~~~~~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~~ge~~~-~~~l~~~i 165 (386)
+.+ |++||++|.||..... .+... .....++++|+++.++.+... +++.|.|.|. |||+. .+.+++.+
T Consensus 28 ~~v-t~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~-----GEPLl~~e~~~~~l 101 (442)
T TIGR01290 28 LAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGP-----GDPLANIGKTFQTL 101 (442)
T ss_pred Eec-CCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecC-----CCcccCccccHHHH
Confidence 455 9999999999975321 11111 123459999999999887754 4566777652 45544 36678888
Q ss_pred HHHhhc--CcEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC----------CC-----CHHHHHHHHH
Q 016605 166 KDIRDM--GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----------TR-----SYDERLETLK 226 (386)
Q Consensus 166 ~~ik~~--g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~----------~~-----s~~~~l~~i~ 226 (386)
+.+++. ++.+ ..|||.+.++.+++|+++|+|.|.+++++. ++.+++|.+ +. .+++.+++++
T Consensus 102 ~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~ 181 (442)
T TIGR01290 102 ELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLE 181 (442)
T ss_pred HHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHH
Confidence 888754 6775 457999889999999999999999999999 899987631 11 1567789999
Q ss_pred HHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC--CCCCC--CCCCCCHHHHHHHHHHHHHhC
Q 016605 227 HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQ--DQKPVEIWEMIRMIATARIVM 302 (386)
Q Consensus 227 ~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~--gT~l~--~~~~~s~~e~~~~~a~~R~~l 302 (386)
.+.+.|+.+.+.+++-.|.|++++.++++++++++ +..+.+.+|+|.| |+++. +.+.++.+++.++...++..+
T Consensus 182 ~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~ 259 (442)
T TIGR01290 182 KLTERGILVKVNSVLIPGINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGT 259 (442)
T ss_pred HHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhh
Confidence 99999998777777655778899999999999997 6778899999888 77753 457788888877776666555
Q ss_pred CC
Q 016605 303 PK 304 (386)
Q Consensus 303 p~ 304 (386)
+.
T Consensus 260 ~~ 261 (442)
T TIGR01290 260 PQ 261 (442)
T ss_pred hh
Confidence 43
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=149.82 Aligned_cols=206 Identities=17% Similarity=0.193 Sum_probs=145.7
Q ss_pred cCCCeeEEEEeeeecCCCCCc----CCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCc----EE-EEeccc--
Q 016605 81 HNFREVQQCTLLSIKTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GST----RF-CMGAAW-- 148 (386)
Q Consensus 81 ~~g~~v~~~~~i~i~t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~----~v-~l~~g~-- 148 (386)
+.|.......++.. |.||+. .|.||++.... ++..++++|.+.++.+.+. +.+ .+ .+.+|.
T Consensus 8 ~~~~~~~~~~~i~~-srGC~~~~~g~C~FC~~~~~~------~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~ 80 (313)
T TIGR01210 8 LRGFPGKSLTIILR-TRGCYWAREGGCYMCGYLADS------SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFL 80 (313)
T ss_pred cCCcccceEEEEEe-CCCCCCCCCCcCccCCCCCCC------CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcC
Confidence 33433333344555 999999 59999765321 2235889999988876653 322 11 133321
Q ss_pred CCCCCChhhHHHHHHHHHHHhhcC----cEEEEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHh-hhCCCCCHHHH
Q 016605 149 RDTIGRKTNFNQILEYVKDIRDMG----MEVCCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYS-KIITTRSYDER 221 (386)
Q Consensus 149 ~~~~ge~~~~~~l~~~i~~ik~~g----~~i~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~-~i~~~~s~~~~ 221 (386)
.+... ..+.+.++++.+++.+ +.+.+++..++++.++.|+++|++ +|.+|+|++ +++++ .++++++.++.
T Consensus 81 D~~~~---~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~ 157 (313)
T TIGR01210 81 DDREV---PKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDF 157 (313)
T ss_pred CcCcC---CHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHH
Confidence 11222 2344555555555433 234566778899999999999998 899999999 99995 79999999999
Q ss_pred HHHHHHHHHcCCeeeEeEEeec-C----CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC------CCCCCCHHH
Q 016605 222 LETLKHVREAGINVCSGGIIGL-G----EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWE 290 (386)
Q Consensus 222 l~~i~~a~~~Gi~v~~~~i~Gl-g----et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~------~~~~~s~~e 290 (386)
.++++.++++|+.+.+.+|+|+ + |+.+++.++++++..+ . ++++++++.|.|||+++ ...++..+.
T Consensus 158 ~~ai~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l--~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws 234 (313)
T TIGR01210 158 IRAAELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPV--T-DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWS 234 (313)
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhc--C-CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHH
Confidence 9999999999999999999998 5 4557777888999888 3 79999999999999864 234554455
Q ss_pred HHHHHHHHH
Q 016605 291 MIRMIATAR 299 (386)
Q Consensus 291 ~~~~~a~~R 299 (386)
.++++...+
T Consensus 235 ~~e~l~e~~ 243 (313)
T TIGR01210 235 VAEVLKEAK 243 (313)
T ss_pred HHHHHHHHH
Confidence 555444443
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=147.68 Aligned_cols=215 Identities=17% Similarity=0.237 Sum_probs=158.0
Q ss_pred hhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCC--CcccCCCCHHHHHHHHHHHHH---c---C------------
Q 016605 79 HAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTG--VKGQKLMTKDAVMQAAQKAKE---A---G------------ 138 (386)
Q Consensus 79 ~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~--~~~~~~~s~eeI~~~~~~~~~---~---G------------ 138 (386)
..|+|-.-+-+..+.....+|+++|.||........+ .......++++|++.+..... . |
T Consensus 48 ~~fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea 127 (322)
T PRK13762 48 SKFYGIESHRCVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEA 127 (322)
T ss_pred cccccccchheeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhc
Confidence 3355655444555555344599999999765332111 223446899999998865421 1 2
Q ss_pred --CcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC
Q 016605 139 --STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT 214 (386)
Q Consensus 139 --~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~ 214 (386)
.+.+.++++ |||+.++++.++++.+++.|+.+ ..|||.+ ++.++.| +++++.+.+++++. ++.|+++++
T Consensus 128 ~~~~~v~iSl~-----GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~ 200 (322)
T PRK13762 128 MEPKHVAISLS-----GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINR 200 (322)
T ss_pred cCCCEEEEeCC-----ccccchhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhC
Confidence 234556542 67888889999999999888875 5689976 7888988 77999999999999 899999976
Q ss_pred C---CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC--CCCCCCCCHH
Q 016605 215 T---RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP--LQDQKPVEIW 289 (386)
Q Consensus 215 ~---~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~--l~~~~~~s~~ 289 (386)
+ .+|+.++++++.+.+.|..+.+.+++-.|.|.++..++++++++++ ++.+.+.+|+|.+... +.....++.+
T Consensus 201 ~~~~~~~~~vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~--~~~Iel~~y~~~G~~k~~l~~~~~p~~e 278 (322)
T PRK13762 201 PVIPDAWERILETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERAN--PDFVEVKAYMHVGYSRNRLTRDNMPSHE 278 (322)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcC--CCEEEEECCeECCCccccccccCCcCHH
Confidence 3 5899999999999999987666655544666666669999999985 8999999999987543 2334567888
Q ss_pred HHHHHHHHHHHhC
Q 016605 290 EMIRMIATARIVM 302 (386)
Q Consensus 290 e~~~~~a~~R~~l 302 (386)
++.++...++...
T Consensus 279 ev~~~~~~l~~~~ 291 (322)
T PRK13762 279 EVREFAKELAEYT 291 (322)
T ss_pred HHHHHHHHHHHhc
Confidence 8888877776654
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=136.35 Aligned_cols=225 Identities=19% Similarity=0.305 Sum_probs=163.3
Q ss_pred HHHHhhcCCCeeEEEEeeeecCCCCCcC--------CCCCCCCCCCCCCCcccCCCCH-HHHHHHHHHHHH-cC-CcE-E
Q 016605 75 QVHRHAHNFREVQQCTLLSIKTGGCSED--------CSYCPQSSRYDTGVKGQKLMTK-DAVMQAAQKAKE-AG-STR-F 142 (386)
Q Consensus 75 ~~~r~~~~g~~v~~~~~i~i~t~~C~~~--------C~fC~~~~~~~~~~~~~~~~s~-eeI~~~~~~~~~-~G-~~~-v 142 (386)
.-.|++ ||.+|+-.. +.. .-.||++ |.||+...... ....+..+. +++.+.++.+.+ .+ .+- +
T Consensus 13 ~~lr~~-fg~Kv~Kv~-ld~-GF~CPNRDGti~rGGCtFC~~~g~~d--~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyia 87 (312)
T COG1242 13 DYLREK-FGEKVFKVT-LDG-GFSCPNRDGTIGRGGCTFCSVAGSGD--FAGQPKISIAEQFKEQAERMHKKWKRGKYIA 87 (312)
T ss_pred HHHHHH-hCCeeEEEe-ccC-CCCCCCCCCcccCCceeeecCCCCCc--cccCcccCHHHHHHHHHHHHHHhhcCCcEEE
Confidence 344566 498888644 344 6689974 99997654321 111122344 455555554433 22 222 3
Q ss_pred EEecccCCCCCChhhHHHHHHHHHHHh-h---cCcEEEEecCCCCHHHHHHHHHhcc---CeeecccCch-HHHHhhhCC
Q 016605 143 CMGAAWRDTIGRKTNFNQILEYVKDIR-D---MGMEVCCTLGMLEKHQAIELKKAGL---TAYNHNLDTS-REFYSKIIT 214 (386)
Q Consensus 143 ~l~~g~~~~~ge~~~~~~l~~~i~~ik-~---~g~~i~~t~g~l~~e~l~~Lk~aG~---~~v~i~le~~-~~~~~~i~~ 214 (386)
+|+.. ++|+.+ .+.+.+..+.+- . .|+.+.+.+..+.++.++.|.+..= -++-+|+||. +++.+.|++
T Consensus 88 YFQ~~-TNTyAp---vevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNR 163 (312)
T COG1242 88 YFQAY-TNTYAP---VEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINR 163 (312)
T ss_pred EEecc-ccccCc---HHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhc
Confidence 45553 566553 345555555443 2 2666667788899999999987642 2456899999 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC------CCCCC
Q 016605 215 TRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVE 287 (386)
Q Consensus 215 ~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~------~~~~s 287 (386)
+|+++...++++.+++.||+|++++|+|+ ||+.++..++++.+..++ ++.|.++++....||+|.. ....+
T Consensus 164 gHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls 241 (312)
T COG1242 164 GHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLS 241 (312)
T ss_pred ccchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceecc
Confidence 99999999999999999999999999999 999999999999999996 8999999999999999853 56789
Q ss_pred HHHHHHHHHHHHHhCCC-cce-eec
Q 016605 288 IWEMIRMIATARIVMPK-AMV-RLS 310 (386)
Q Consensus 288 ~~e~~~~~a~~R~~lp~-~~i-~i~ 310 (386)
.+++..++.-+-..+|. ..| +++
T Consensus 242 ~eeYv~~~~d~le~lpp~vviHRit 266 (312)
T COG1242 242 LEEYVELVCDQLEHLPPEVVIHRIT 266 (312)
T ss_pred HHHHHHHHHHHHHhCCcceEEEEec
Confidence 99999998877666655 444 444
|
|
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-16 Score=141.42 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=142.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhhHHH-HHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~~~~-l~~~i~~ik~~ 171 (386)
+.+||++|.||...... .....+.++++|+++.++..... ....|.++| |||+...+ +.++++.+++.
T Consensus 27 ~~gCnl~C~~C~~~~~~--~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~~~~l~~~~k~~ 98 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTW--DTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKKE 98 (246)
T ss_pred ECCCCCcCCCCCCHHHC--CCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC------ccHhcCHHHHHHHHHHHHHc
Confidence 78999999999865321 11122348999999988765432 234576665 46755544 56999999988
Q ss_pred CcEE-EEecCCCC--HHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCC
Q 016605 172 GMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGE 245 (386)
Q Consensus 172 g~~i-~~t~g~l~--~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glge 245 (386)
|+.+ ..|||.+. .+.++.+.+ .+|.+.+++++. ++.|+.+++. +.+..++.++.+.+.|+++.+.+++ |.++
T Consensus 99 g~~i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd 176 (246)
T PRK11145 99 GIHTCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVVPGWTD 176 (246)
T ss_pred CCCEEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEECCCCC
Confidence 8875 56789863 577787766 479999999999 8889988654 5678899999999999876555444 5567
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC---------CCCCCCCCCHHHHHHHHHHHHHh
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGT---------PLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT---------~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+++|+.+++++++.++ .+..+.+.+|.|.++. ++.+.++++.+++.+...+++..
T Consensus 177 ~~~ei~~l~~~l~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 240 (246)
T PRK11145 177 DDDSAHRLGEFIKDMG-NIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQY 240 (246)
T ss_pred CHHHHHHHHHHHHhcC-CcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHc
Confidence 7789999999999885 3567888888887643 34456778888877776666543
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=135.37 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=149.9
Q ss_pred CCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCChhhHHHHHHHHHHHhhc-
Q 016605 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~G~--~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~- 171 (386)
+.+||++|.||+....+... .+......+|.+++..+...+..- -+.++-| .|||..++.+.++++++++.
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDG-----qGEP~lYP~l~~lVqalk~~~ 188 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDG-----QGEPLLYPHLVDLVQALKEHK 188 (414)
T ss_pred CccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecC-----CCCCccchhHHHHHHHHhcCC
Confidence 77999999999876543211 122234788888888877665322 2455654 36888999999999999975
Q ss_pred CcEE--EEecC-CCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCC
Q 016605 172 GMEV--CCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGE 245 (386)
Q Consensus 172 g~~i--~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glge 245 (386)
|+++ .-||| .++++.+++|.+||+|++++|++++ ++.-+.+.+. .+.+.+++..+.+..+||.+-+.-++-.|-
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~ 268 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGV 268 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCc
Confidence 6653 23455 5899999999999999999999999 7777777663 478999999999999999976666654588
Q ss_pred CHHHHHHHHHHHhcCCCC--CCeEeeeeeeecC-CCCCCCCCCCCHHHHHHHHHHHH
Q 016605 246 AEEDRVGLLHTLATLPTH--PESVPINALLAVK-GTPLQDQKPVEIWEMIRMIATAR 299 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~--~~~v~~~~f~P~~-gT~l~~~~~~s~~e~~~~~a~~R 299 (386)
|++|+..+++|++++|.+ -..++++.|+|+. |-.-....+.+..++.+++...-
T Consensus 269 ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelE 325 (414)
T COG2100 269 NDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELE 325 (414)
T ss_pred ChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHH
Confidence 899999999999999752 3457889999987 33222345678888888876553
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-14 Score=137.14 Aligned_cols=208 Identities=18% Similarity=0.285 Sum_probs=155.4
Q ss_pred CCCCCc-CCCCCCCC------CCCCCCC-------cccCCCCHHHHHHHHHHHHHcCCc----EEEEecccCCCCCChhh
Q 016605 96 TGGCSE-DCSYCPQS------SRYDTGV-------KGQKLMTKDAVMQAAQKAKEAGST----RFCMGAAWRDTIGRKTN 157 (386)
Q Consensus 96 t~~C~~-~C~fC~~~------~~~~~~~-------~~~~~~s~eeI~~~~~~~~~~G~~----~v~l~~g~~~~~ge~~~ 157 (386)
..+||+ +|.||... +.+ .+. .+...-+..++...++++...|.+ ++.+.|| +.+.-....
T Consensus 74 p~~CPHg~CvfCpgg~~~~spQSy-tg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGG-TFta~~~~y 151 (515)
T COG1243 74 PHGCPHGRCVFCPGGPDKDSPQSY-TGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGG-TFTALSLEY 151 (515)
T ss_pred CCCCCCCeEEeCCCCCCCCCCccc-CCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecc-cccCCCHHH
Confidence 568997 99999765 212 111 112224667888889999988753 2334444 555433233
Q ss_pred HHHHHHHHHHHhh--------------------cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC
Q 016605 158 FNQILEYVKDIRD--------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR 216 (386)
Q Consensus 158 ~~~l~~~i~~ik~--------------------~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~ 216 (386)
.++++..+..... .|+.+.+.+...+++.+..|++.|+++|-+|+|++ +++++...++|
T Consensus 152 qe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGH 231 (515)
T COG1243 152 QEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGH 231 (515)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCc
Confidence 3454444332211 24556677888999999999999999999999999 99999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCC-CCCCeEeeeeeeecCCCCCC------CCCCCCH
Q 016605 217 SYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLP-THPESVPINALLAVKGTPLQ------DQKPVEI 288 (386)
Q Consensus 217 s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~-~~~~~v~~~~f~P~~gT~l~------~~~~~s~ 288 (386)
+.+++.++-+.++++|++++.++|.|+ |-+.+--.+.+..+-+.+ ..||.+.+++-..++||++. ...+.+.
T Consensus 232 tvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~ 311 (515)
T COG1243 232 TVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTT 311 (515)
T ss_pred cHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCH
Confidence 999999999999999999999999999 776655455555554442 24899999999999999974 3578899
Q ss_pred HHHHHHHHHHHHhCCCc
Q 016605 289 WEMIRMIATARIVMPKA 305 (386)
Q Consensus 289 ~e~~~~~a~~R~~lp~~ 305 (386)
++.+++++.+..++|+.
T Consensus 312 EEaVeli~~i~~~~p~w 328 (515)
T COG1243 312 EEAVELIVEIYRLEPKW 328 (515)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999888888874
|
|
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=146.96 Aligned_cols=228 Identities=13% Similarity=0.207 Sum_probs=152.2
Q ss_pred HhhcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhh-cCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCC
Q 016605 44 TIREGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHA-HNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLM 122 (386)
Q Consensus 44 ~~~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~-~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~ 122 (386)
+...+|...||.+|+-.+|..|....-.-... +. ..+---.+...|.+ +.||+..|+||..+... + ..++..
T Consensus 250 ~v~npp~~~l~~~e~d~~y~lpy~r~~hp~y~---~~g~ipa~~~i~~sI~i-~RGC~g~CSFCaIp~~r--G-r~~rSR 322 (620)
T PRK00955 250 VVQNPPAPPLTQEELDEVYDLPYTRTYHPSYE---EKGGIPAIEEVKFSITS-HRGCFGGCSFCAITFHQ--G-RFIQSR 322 (620)
T ss_pred EEECCCCCCCChhhhhhccCCCcccCcchhhc---cCCCCCceeeEEEEEEe-eCCCCCCCCCCCeeccc--C-Ccceec
Confidence 34556777899999999988664322111111 11 00000112234566 89999999999877542 2 122347
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEE-eccc-CCCCCC-------------------------hhhHHHHHHHHHHHhhc-Cc
Q 016605 123 TKDAVMQAAQKAKEA-GSTRFCM-GAAW-RDTIGR-------------------------KTNFNQILEYVKDIRDM-GM 173 (386)
Q Consensus 123 s~eeI~~~~~~~~~~-G~~~v~l-~~g~-~~~~ge-------------------------~~~~~~l~~~i~~ik~~-g~ 173 (386)
+.++|+++++.+.+. |++.+.. +||. .+.+|. ......+.++++++++. |+
T Consensus 323 s~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gv 402 (620)
T PRK00955 323 SQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGV 402 (620)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCc
Confidence 999999999999876 7777642 2321 112220 01235788888888764 54
Q ss_pred E-EEEecCC--------CCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCCC--CHHHHHHHH-HHHHHcCCe--eeE
Q 016605 174 E-VCCTLGM--------LEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITTR--SYDERLETL-KHVREAGIN--VCS 237 (386)
Q Consensus 174 ~-i~~t~g~--------l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~~--s~~~~l~~i-~~a~~~Gi~--v~~ 237 (386)
. +.++.|. .+++.++.|.+..+. .+.+++|+. +++++.++++. .+++.++.+ +.+.++|+. +..
T Consensus 403 krv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~ 482 (620)
T PRK00955 403 KKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVP 482 (620)
T ss_pred eEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEE
Confidence 3 4444441 234578888876443 688999999 99999998763 234444333 445677876 889
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
.+|+|+ |||++|+.++++++++++ .+.+.++.|.|.|||+-
T Consensus 483 yfIvGfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~A 524 (620)
T PRK00955 483 YLMSSHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLS 524 (620)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcch
Confidence 999999 999999999999999996 78899999999999863
|
|
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-15 Score=147.15 Aligned_cols=225 Identities=16% Similarity=0.217 Sum_probs=157.0
Q ss_pred CCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHH
Q 016605 48 GPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAV 127 (386)
Q Consensus 48 ~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI 127 (386)
+|...||.+|+-.+|+.|....-.-... +.-.+---.+...|.+ +.||+.+|+||+.... .+. .....+.|+|
T Consensus 335 pP~~plt~~ElD~vy~LPy~R~~HP~Y~---~~~ipA~e~i~~sV~i-~RGC~g~CSFCaI~~h--qGr-~irSRS~esI 407 (707)
T PRK01254 335 PPAIPLSTEEMDSVFALPYARVPHPAYG---KARIPAYDMIRFSVNI-MRGCFGGCSFCSITEH--EGR-IIQSRSEESI 407 (707)
T ss_pred CCcCCCCHHHHHHHhCCCcccccCcccc---cCCCCchhheEEEEEE-ccCCCCCCCccccccc--cCC-eeeeCCHHHH
Confidence 4556678888888877553221111100 0000000012234566 8999999999998754 232 1334799999
Q ss_pred HHHHHHHHHc--CCcEEE--EecccCCCCCC---h----------------------hhHHHHHHHHHHHhhc-CcE-EE
Q 016605 128 MQAAQKAKEA--GSTRFC--MGAAWRDTIGR---K----------------------TNFNQILEYVKDIRDM-GME-VC 176 (386)
Q Consensus 128 ~~~~~~~~~~--G~~~v~--l~~g~~~~~ge---~----------------------~~~~~l~~~i~~ik~~-g~~-i~ 176 (386)
+++++.+.+. |++.+. ++|-..+.+|. + .....+.++++++++. |+. +.
T Consensus 408 L~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVr 487 (707)
T PRK01254 408 INEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKIL 487 (707)
T ss_pred HHHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEE
Confidence 9999999863 999887 55544444442 0 1235788888888864 553 44
Q ss_pred EecCC------CCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC--CCHHHHHHHHHHHHHc-CC--eeeEeEEeec
Q 016605 177 CTLGM------LEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREA-GI--NVCSGGIIGL 243 (386)
Q Consensus 177 ~t~g~------l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~--~s~~~~l~~i~~a~~~-Gi--~v~~~~i~Gl 243 (386)
+..|. .+++.++.|.+..+. .+.+.+|+. +++++.++++ .++++..+.++.+++. |. .+...+|+|+
T Consensus 488 I~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGh 567 (707)
T PRK01254 488 IASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAH 567 (707)
T ss_pred EEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEEC
Confidence 43331 258899999887765 677899999 9999999886 5789999999888764 64 4667899998
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC---CCCCC
Q 016605 244 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---GTPLQ 281 (386)
Q Consensus 244 -get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~---gT~l~ 281 (386)
|+|++|+.++++|+++++ .+.-.++.|+|.| +|.|.
T Consensus 568 PGeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~MY 607 (707)
T PRK01254 568 PGTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTMY 607 (707)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHHH
Confidence 999999999999999996 6677788999999 77664
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=148.99 Aligned_cols=193 Identities=22% Similarity=0.325 Sum_probs=141.9
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHH-H
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVK-D 167 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~-~ 167 (386)
..+++ ++||+.+|.||+.+... .++.++++.++++++...+.|...+.+..+....++.+ ...+...+.+. .
T Consensus 200 ~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 273 (490)
T COG1032 200 FSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLE 273 (490)
T ss_pred EEEEe-ccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHH
Confidence 45677 99999999999987431 24457888888888887777766644222222222222 12223333332 2
Q ss_pred HhhcCc------EEE---EecCCCC-HHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHH-HHHHHHHcCCee
Q 016605 168 IRDMGM------EVC---CTLGMLE-KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLE-TLKHVREAGINV 235 (386)
Q Consensus 168 ik~~g~------~i~---~t~g~l~-~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~-~i~~a~~~Gi~v 235 (386)
+.+.+. .+. .....++ ++.++.++++|..++.+++|+. +++++.++++++.++.++ +++.+.+.|+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~ 353 (490)
T COG1032 274 LIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRV 353 (490)
T ss_pred HHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCcee
Confidence 222222 221 2234566 8899999999999999999999 999999999999999995 999999999999
Q ss_pred eEeEEeec-CCCHHHHHHH---HHHHhcCCCCC-CeEeeeeeeecCCCCCCCCCCCCHHH
Q 016605 236 CSGGIIGL-GEAEEDRVGL---LHTLATLPTHP-ESVPINALLAVKGTPLQDQKPVEIWE 290 (386)
Q Consensus 236 ~~~~i~Gl-get~ed~~~~---l~~l~~l~~~~-~~v~~~~f~P~~gT~l~~~~~~s~~e 290 (386)
...+|+|+ |||.+|+..+ ++++++++ . ..+.++.|+|.|+|++..........
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~--~~~~~~~~~~~p~p~t~~~~~~~~~~~~ 411 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLG--PKLYVSPSPFVPLPGTPLQEMPKLENEL 411 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhC--ccceEEEeeeeCCCCCchhhcccccchh
Confidence 99999999 9999999998 78888886 4 47999999999999998765544433
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-14 Score=125.02 Aligned_cols=156 Identities=17% Similarity=0.258 Sum_probs=116.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i 175 (386)
|++||++|.||..+.. ........++++++.+.+..... .++.|.++| |||+...++.++++.+++.|+.+
T Consensus 23 t~~Cnl~C~~C~~~~~--~~~~~~~~~~~~~i~~~i~~~~~-~~~~i~~sG------GEPll~~~l~~li~~~~~~g~~v 93 (191)
T TIGR02495 23 FQGCNLKCPYCHNPEL--IDREGSGEIEVEFLLEFLRSRQG-LIDGVVITG------GEPTLQAGLPDFLRKVRELGFEV 93 (191)
T ss_pred cCCCCCCCCCCCCccc--cCCCCCCcCCHHHHHHHHHHhcC-CCCeEEEEC------CcccCcHhHHHHHHHHHHCCCeE
Confidence 8999999999987632 11222345899999998886532 356777765 45666666889999998888775
Q ss_pred -EEecCCCCHHHHHHHHHhc-cCeeecccCchHHHHhhhCC-CCCHH-HHHHHHHHHHHcCCeeeEeEEeec-CCCHHHH
Q 016605 176 -CCTLGMLEKHQAIELKKAG-LTAYNHNLDTSREFYSKIIT-TRSYD-ERLETLKHVREAGINVCSGGIIGL-GEAEEDR 250 (386)
Q Consensus 176 -~~t~g~l~~e~l~~Lk~aG-~~~v~i~le~~~~~~~~i~~-~~s~~-~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~ 250 (386)
..|||. +++.++.+.++| ++.+.+++++.++.+..+.+ +.+++ +++++++.+++.|+.+.+.+++-. ....+++
T Consensus 94 ~i~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei 172 (191)
T TIGR02495 94 KLDTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEEDL 172 (191)
T ss_pred EEEeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHH
Confidence 456886 678899999998 69999999988666666643 45665 899999999999998766665543 2236789
Q ss_pred HHHHHHHhcCC
Q 016605 251 VGLLHTLATLP 261 (386)
Q Consensus 251 ~~~l~~l~~l~ 261 (386)
.++++++++++
T Consensus 173 ~~~~~~l~~~~ 183 (191)
T TIGR02495 173 AEIATRIKENG 183 (191)
T ss_pred HHHHHHhccCC
Confidence 99999998773
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=135.50 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=141.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhh--HHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTN--FNQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~--~~~l~~~i~ 166 (386)
..+.+ |++||.+|.||...... +......++.+++.+.++.+.+ .++..|.++|| +|+. .+++.++++
T Consensus 90 vll~v-T~~C~~~Cr~C~r~~~~--~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGG------DPl~~~~~~L~~ll~ 160 (321)
T TIGR03822 90 VLLKP-VHVCPVYCRFCFRREMV--GPEGLGVLSPAELDAAFAYIADHPEIWEVILTGG------DPLVLSPRRLGDIMA 160 (321)
T ss_pred EEEEe-cCCCCCcCcCCCchhhc--CCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCC------CcccCCHHHHHHHHH
Confidence 34566 99999999999865321 1112234688999998888875 48888888775 3433 357777777
Q ss_pred HHhhcC-c---EEEE-----ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 167 DIRDMG-M---EVCC-----TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 167 ~ik~~g-~---~i~~-----t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
.+++.+ + .+.+ ++..++++.++.|+++|+ .+.+++++. ++. + .++.+++++.++++|+.+.
T Consensus 161 ~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~e---l-----~~~~~~ai~~L~~~Gi~v~ 231 (321)
T TIGR03822 161 RLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHARE---L-----TAEARAACARLIDAGIPMV 231 (321)
T ss_pred HHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhh---c-----CHHHHHHHHHHHHcCCEEE
Confidence 777653 2 2222 233479999999999995 477888886 321 1 4788999999999999876
Q ss_pred EeEEe--ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 237 SGGII--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 237 ~~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
...++ |.+++.+++.++.+++.+++ +..+.++.+.|.+|+... ..+.++..+++..++..++.
T Consensus 232 ~q~vLl~gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 232 SQSVLLRGVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISG 296 (321)
T ss_pred EEeeEeCCCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCC
Confidence 64443 77999999999999999996 788889999999997543 36788888888888877765
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=127.90 Aligned_cols=193 Identities=19% Similarity=0.263 Sum_probs=139.6
Q ss_pred CCCCCcCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhcCc
Q 016605 96 TGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~g~ 173 (386)
+.+||++|.||.++..... .......++++++.+.+. ...+...|+++| ||| ...+.+.++++.+|+.|+
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SG------GEP~~q~e~~~~~~~~ake~Gl 113 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSG------GEPTLQAEFALDLLRAAKERGL 113 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEEC------CcchhhHHHHHHHHHHHHHCCC
Confidence 7899999999998754321 111222344444443322 223567788876 456 677999999999999999
Q ss_pred EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHH
Q 016605 174 EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEED 249 (386)
Q Consensus 174 ~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed 249 (386)
.+ ..|||..+++.+++|.+. +|.+.+++.+. ++.|+.+.... .+.+++.++.+.+.|+.+.+..++ |.+++.++
T Consensus 114 ~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~-~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~ 191 (260)
T COG1180 114 HVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGAD-NEPVLENLELLADLGVHVEIRTLVIPGYNDDEEE 191 (260)
T ss_pred cEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCC-cHHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHH
Confidence 85 668999999999999988 89999999999 78788887544 499999999999999986655544 55678999
Q ss_pred HHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 250 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 250 ~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+.++++++.++. ....+.+.+|.|. ..+...++...+.+.+....++..
T Consensus 192 i~~i~~~i~~~~-~~~p~~~l~fhp~--~~~~~~p~~~~~~le~~~~~a~~~ 240 (260)
T COG1180 192 IRELAEFIADLG-PEIPIHLLRFHPD--YKLKDLPPTPVETLEEAKKLAKEE 240 (260)
T ss_pred HHHHHHHHHhcC-CcccEEEeccccC--ccccccCCCcHHHHHHhHhhhHHH
Confidence 999999999875 3566777777763 334444444455555555555544
|
|
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-13 Score=129.51 Aligned_cols=190 Identities=18% Similarity=0.269 Sum_probs=139.5
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHH--------HHcCCcEEEEecccCCCCCChhh-HHHHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA--------KEAGSTRFCMGAAWRDTIGRKTN-FNQIL 162 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~--------~~~G~~~v~l~~g~~~~~ge~~~-~~~l~ 162 (386)
++. +.+||.+|.||.... .+.. +.++.+||++.+..+ ...+++.|++.|- |||+. ++.+.
T Consensus 125 iSs-q~GCnl~C~FC~tg~---~g~~--rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGm-----GEPLln~d~v~ 193 (368)
T PRK14456 125 ISS-QAGCALRCSFCATGQ---MGFR--RNLTAGEITGQVFALSDMLAERNRERGITNIVFMGM-----GEPLLNTDNVF 193 (368)
T ss_pred EEe-cCCCCCCCCCCCCCC---CCCC--CCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCc-----CccccCHHHHH
Confidence 444 789999999998653 1222 348999999887433 1346788888762 56644 45799
Q ss_pred HHHHHHhhc----Cc---EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCC----CCCHHHHHHHHHH-
Q 016605 163 EYVKDIRDM----GM---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT----TRSYDERLETLKH- 227 (386)
Q Consensus 163 ~~i~~ik~~----g~---~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~----~~s~~~~l~~i~~- 227 (386)
++++.+++. ++ .+ ..|+|. . +.+++|.++|++ .+.+|+++. ++.++++.| ..++++++++++.
T Consensus 194 ~~i~~l~~~~~~~~is~r~ItisT~Gl-~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~ 271 (368)
T PRK14456 194 EAVLTLSTRKYRFSISQRKITISTVGI-T-PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGY 271 (368)
T ss_pred HHHHHHhccccccCcCcCeeEEECCCC-h-HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHH
Confidence 999988753 22 23 455774 3 458999999997 899999999 999999964 3488999999984
Q ss_pred HHHcCCee--eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 228 VREAGINV--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 228 a~~~Gi~v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.+.|..+ ...+|-|++++.+|+.+++++++.+ ...+.+.+|+|+++.++. +++.+.+.+...+.+.
T Consensus 272 ~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~---~~~VnlIpyn~~~~~~~~---~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 272 ASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF---FCKINLIDYNSIVNIKFE---PVCSSTRERFRDRLLD 340 (368)
T ss_pred HHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC---CCeeEEeeeccCCCCCCC---CCCHHHHHHHHHHHHH
Confidence 66778664 4556667789999999999999988 357788889988887753 4667766666555554
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=136.61 Aligned_cols=182 Identities=11% Similarity=0.178 Sum_probs=128.9
Q ss_pred EEEeeeecCCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHc-CCcEEE--EecccCCCCCChhhHHHHHH
Q 016605 88 QCTLLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA-GSTRFC--MGAAWRDTIGRKTNFNQILE 163 (386)
Q Consensus 88 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~-G~~~v~--l~~g~~~~~ge~~~~~~l~~ 163 (386)
+...+...+..||++|.||......... ......|+.+++.+.++++.+. +...+. ++|| .|+......+..+.+
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG-EPlL~~~~~~~~~~~ 91 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGG-ETLMRPLSFYKKALE 91 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcc-ccCCCcHHHHHHHHH
Confidence 3344555246999999999875321100 0112348999999999887764 444543 3443 444332223444555
Q ss_pred HHHHH-hhcCcEE-EEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeee
Q 016605 164 YVKDI-RDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 164 ~i~~i-k~~g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~----~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
+++.. +..++.+ ..|||. ++++.++.|++.|+ .|.+|+|+.+++++..++ ..+|++++++|+.+++.|+.++
T Consensus 92 ~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~ 170 (412)
T PRK13745 92 LQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN 170 (412)
T ss_pred HHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE
Confidence 55432 2345553 467886 78999999999997 899999999778887764 3589999999999999999887
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+.+++ ..++.+++.+++++++++| ++.+.|.+++|
T Consensus 171 i~~vv-~~~n~~~~~e~~~~~~~lg--~~~~~~~p~~~ 205 (412)
T PRK13745 171 AMAVV-NDFNADYPLDFYHFFKELD--CHYIQFAPIVE 205 (412)
T ss_pred EEEEE-cCCccccHHHHHHHHHHcC--CCeEEEEeccC
Confidence 76555 4677888999999999997 78888888877
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-13 Score=128.36 Aligned_cols=188 Identities=15% Similarity=0.258 Sum_probs=138.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHH---H-Hc--C---CcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA---K-EA--G---STRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~---~-~~--G---~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
..+|+.+|.||.... .+. .+.++.+||++++... . .. | ++.|++.|+|.|+ ..++.+.+.++
T Consensus 109 q~GC~~~C~FC~tg~---~g~--~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPL----ln~~~v~~~l~ 179 (354)
T PRK14460 109 QVGCAMGCTFCSTGT---MGF--ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPL----LNLDEVMRSLR 179 (354)
T ss_pred CCCcCCCCccCCCCC---CCC--CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCccc----CCHHHHHHHHH
Confidence 669999999997542 122 3358999999998433 2 22 2 5667777744332 34678889999
Q ss_pred HHhh-cCc-----EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHH-HHcCCe
Q 016605 167 DIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGIN 234 (386)
Q Consensus 167 ~ik~-~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a-~~~Gi~ 234 (386)
.+++ .|+ .+ ..|+|. .+.++.|.++|+..+.+++++. ++.++++.+. .+.++.+++++.. .+.|-.
T Consensus 180 ~l~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~ 257 (354)
T PRK14460 180 TLNNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRER 257 (354)
T ss_pred HHhhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCe
Confidence 8874 354 23 456886 6788999999998999999999 9999999774 3788899888754 344444
Q ss_pred --eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 235 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 235 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+...+|-|++++.+|+.+++++++.++ ..|.+.+|+|.+|.++ ++++.+++.+.....+.
T Consensus 258 v~iey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 258 VTFEYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPY---SAPTEERILAFEKYLWS 319 (354)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 556667788999999999999999984 3688889999888775 45677776666555544
|
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-13 Score=129.51 Aligned_cols=176 Identities=20% Similarity=0.249 Sum_probs=139.9
Q ss_pred EEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCChhhHHHHHHHH
Q 016605 87 QQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYV 165 (386)
Q Consensus 87 ~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~ge~~~~~~l~~~i 165 (386)
.....+++ |+.||.+|.||+..... . ....++.++..+....+.+.| ...+.++| |+|+..+++.+++
T Consensus 18 p~~~~~~~-t~~Cnl~C~~C~~~~~~--~--~~~el~~~~~~~~~~~~~~~g~~~~v~~~g------GEPll~~d~~ei~ 86 (347)
T COG0535 18 PLVVGIEL-TNRCNLACKHCYAEAGK--K--LPGELSTEEDLRVIDELAELGEIPVVIFTG------GEPLLRPDLLEIV 86 (347)
T ss_pred CcEEEEee-ccccCCcCcccccccCC--C--CccccCHHHHHHHHHHHHHcCCeeEEEEeC------CCccccccHHHHH
Confidence 34445667 99999999999876432 1 123488999988888888888 54444444 5676778999999
Q ss_pred HHHhhc-CcEE-EEecCC-CCHHHHHHHHHhccCeeecccCch-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 166 KDIRDM-GMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 166 ~~ik~~-g~~i-~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
+.+++. ++.+ ..|||. ++++.++.++++|++.+.+++|+. ++.|+.++. ...++..+++++.+.+.|+.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~ 166 (347)
T COG0535 87 EYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTT 166 (347)
T ss_pred HHHhhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEE
Confidence 999855 6664 556774 678999999999999999999999 888888877 56899999999999999998555555
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+ ...+.+++.+.++.+.+++ +..+.+..++|.+
T Consensus 167 v-~~~n~~~l~~~~~~~~~~g--~~~~~~~~~~~~g 199 (347)
T COG0535 167 V-TKINYDELPEIADLAAELG--VDELNVFPLIPVG 199 (347)
T ss_pred E-ecCcHHHHHHHHHHHHHcC--CCEEEEEEEeecc
Confidence 4 3678899999999999997 6788888888876
|
|
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-13 Score=131.31 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=120.7
Q ss_pred CCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCChhhH--HHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF--NQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~~ge~~~~--~~l~~~i~~ik~ 170 (386)
|..||++|.||......... ......|+.+.+.+.++.+.+. +...|.+.| |||+.. +.+.++++.+++
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~G------GEPll~~~~~~~~~~~~~~~ 85 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQG------GEPTLAGLEFFEELMELQRK 85 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEEC------CccccCChHHHHHHHHHHHH
Confidence 58999999999875322111 1122348888888877766554 333456665 355443 344566666665
Q ss_pred cC---cE---EEEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeeeEeE
Q 016605 171 MG---ME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGG 239 (386)
Q Consensus 171 ~g---~~---i~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~----~~s~~~~l~~i~~a~~~Gi~v~~~~ 239 (386)
.+ +. ..+|||. ++++.++.|++.|+ .|.+++|+.++.++..++ ..+++.++++|+.+++.|+.+.+.+
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~ 164 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILC 164 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEE
Confidence 43 32 3568886 68899999999986 899999999778888774 4589999999999999999887777
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeEeeee-eeec
Q 016605 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINA-LLAV 275 (386)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~-f~P~ 275 (386)
++. ..+.+++.++++++.+++ ++.+.+.. +.|.
T Consensus 165 ~v~-~~n~~~l~~i~~~~~~~g--~~~~~~~~~~~p~ 198 (370)
T PRK13758 165 VVT-SNTARHVNKIYKYFKEKD--FKFLQFINCLDPL 198 (370)
T ss_pred Eec-cccccCHHHHHHHHHHcC--CCeEeeeeccCcc
Confidence 764 456778999999999996 66666543 3453
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=126.47 Aligned_cols=187 Identities=17% Similarity=0.243 Sum_probs=135.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCChhh-HHHHHHHHHHHhh-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRD- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~---~G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~ik~- 170 (386)
+.+||.+|.||.... .+. .+.++.+||++.+..+.. .++..|++.|- |||+. ++.+.++++.+++
T Consensus 108 q~GC~l~C~fC~tg~---~g~--~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~Gm-----GEPLln~d~v~~~i~~l~~~ 177 (343)
T PRK14469 108 QVGCPVKCIFCATGQ---SGF--VRNLTTGEIVSQILAMEKEEKKKVGNVVYMGM-----GEPLLNYENVIKSIKILNHK 177 (343)
T ss_pred cCCCCCcCcCCCCCC---CCc--cccCCHHHHHHHHHHHHHhccCCcCeEEEEcc-----ChhhhhHHHHHHHHHHHhch
Confidence 689999999998643 122 234899999998865432 35677888762 46644 4678888888752
Q ss_pred ----cCc-EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeee--
Q 016605 171 ----MGM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVC-- 236 (386)
Q Consensus 171 ----~g~-~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v~-- 236 (386)
.|. .+ ..|+|. .+.++.|.+.|++ .+.+|+++. ++.++++.+ ..++++++++++.+.+. +..+.
T Consensus 178 ~~~~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~ 255 (343)
T PRK14469 178 KMKNIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIE 255 (343)
T ss_pred hcccCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 233 33 356785 6788999999998 699999999 889998764 45899999999876554 55544
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
..++-|.+++.+|+.+++++++.++ ..|.+.+|.|.++ ...+++.+++.++...++..
T Consensus 256 yvlI~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l~~~ 313 (343)
T PRK14469 256 YILIKGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEILLKN 313 (343)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHHHHC
Confidence 4566677899999999999999884 3677778877654 34556777766666555543
|
|
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-12 Score=124.67 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=139.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH---c------C--CcEEEEecccCCCCCChh-hHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---A------G--STRFCMGAAWRDTIGRKT-NFNQILE 163 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~---~------G--~~~v~l~~g~~~~~ge~~-~~~~l~~ 163 (386)
+.+|+.+|.||+... .+. .+.++.+||++.+..+.. . | ++.|+|.|- |||+ +++.+.+
T Consensus 128 QvGC~m~C~FCatg~---~g~--~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGm-----GEPLlN~d~V~~ 197 (373)
T PRK14459 128 QAGCGMACPFCATGQ---GGL--TRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGM-----GEPLANYKRVVA 197 (373)
T ss_pred cCCCCCcCCCCCCCC---CCC--CCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecC-----CcchhhHHHHHH
Confidence 779999999998542 222 245899999999887653 1 1 456777662 5775 5899999
Q ss_pred HHHHHhh-----cCc---EEEE-ecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH
Q 016605 164 YVKDIRD-----MGM---EVCC-TLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR 229 (386)
Q Consensus 164 ~i~~ik~-----~g~---~i~~-t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~ 229 (386)
.++.+++ .|+ .+.+ |.|.. ..+++|.+.+++ .+.+++.+. ++.++++.|. .+.++++++++...
T Consensus 198 ~i~~l~~~~~~g~gis~r~ITvST~Gl~--~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~ 275 (373)
T PRK14459 198 AVRRITAPAPEGLGISARNVTVSTVGLV--PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYA 275 (373)
T ss_pred HHHHHhCcccccCCccCCEEEEECcCch--hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 9999976 355 3433 45653 467888888877 789999999 9999999883 58899999966654
Q ss_pred -HcCCeeeE--eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 230 -EAGINVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 230 -~~Gi~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.|..+.. .+|-|.+++.++..++.++++.++.....|.+.+|+|.++.++. .++.+.+.++....+.
T Consensus 276 ~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~---~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 276 DATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWT---ASPPEVEREFVRRLRA 346 (373)
T ss_pred HHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCc---CCCHHHHHHHHHHHHH
Confidence 66877554 55567799999999999999988422457899999998887653 3566665555555543
|
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-13 Score=124.20 Aligned_cols=169 Identities=18% Similarity=0.286 Sum_probs=135.2
Q ss_pred CCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 98 GCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 98 ~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~------G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
.|+++|.||...........+......+.|.+..+.+... .++.+.|++. |||.++.++-++|+.+|+.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHHHHhc
Confidence 8999999998743322222244457899999999887765 4667777763 6888899999999999998
Q ss_pred C-cE-EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC---CHHHHHHHHHHHHHc-CCe--eeEeEEee
Q 016605 172 G-ME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREA-GIN--VCSGGIIG 242 (386)
Q Consensus 172 g-~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~---s~~~~l~~i~~a~~~-Gi~--v~~~~i~G 242 (386)
| +. ..+|||.+ ++.++.|. -.|.+.+++|+. ++.|++|++++ +|++++++++.+++. .-. +.++++=|
T Consensus 108 g~~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg 184 (296)
T COG0731 108 GKKTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKG 184 (296)
T ss_pred CCceEEEEeCCCh-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecc
Confidence 8 55 57899988 88888887 378999999999 89999999864 799999999999996 333 45555556
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 243 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 243 lget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
++.+.+++.+.+++++.+. |+.|.+..++-.|
T Consensus 185 ~N~~~e~~~~~a~ll~~~~--Pd~velk~~~rpg 216 (296)
T COG0731 185 INDDEEELEEYAELLERIN--PDFVELKTYMRPG 216 (296)
T ss_pred ccCChHHHHHHHHHHHhcC--CCeEEEecCccCC
Confidence 6777778999999999995 8999999887544
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-12 Score=124.46 Aligned_cols=187 Identities=17% Similarity=0.237 Sum_probs=134.7
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-C-----CcEEEEecccCCCCCCh-hhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G-----STRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G-----~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~i 168 (386)
+.+|+.+|.||.... .+ ..+.++.+||++.+..+... | ++.|+|.|.| || .+++.+.+.++.+
T Consensus 100 q~GC~l~C~fC~tg~---~g--~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmG-----EPlln~~~v~~~i~~l 169 (343)
T PRK14468 100 MVGCPAGCAFCATGA---MG--FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMG-----EPLLNYENVLKAARIM 169 (343)
T ss_pred cCCCCCcCCCCCCCC---CC--CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccC-----ccccCHHHHHHHHHHh
Confidence 789999999997642 12 23458999999988765432 2 4567777743 45 3568888888887
Q ss_pred h-hcCc-----EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHHH-HHcCCee
Q 016605 169 R-DMGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAGINV 235 (386)
Q Consensus 169 k-~~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a-~~~Gi~v 235 (386)
. ..++ .+ ..|+|. ...+++|.+.+++ .+.+++++. ++.++++.|. .+.++.+++++.. .+.+..+
T Consensus 170 ~~~~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V 247 (343)
T PRK14468 170 LHPQALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRV 247 (343)
T ss_pred cccccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeE
Confidence 4 3333 23 456784 4678888888877 689999999 8999999853 3789999999754 4455554
Q ss_pred --eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 236 --CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 236 --~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
...+|-|.+++.+++.++.++++.+. ..+.+.+|.|+++.. ..+++.+++.+..+..+.
T Consensus 248 ~ieyvLI~GvNDs~e~~~~L~~ll~~~~---~~VnLIPynp~~~~~---~~~ps~e~i~~f~~~L~~ 308 (343)
T PRK14468 248 TLEYTMLKGVNDHLWQAELLADLLRGLV---SHVNLIPFNPWEGSP---FQSSPRAQILAFADVLER 308 (343)
T ss_pred EEEEEEeCCCcCCHHHHHHHHHHHhcCC---cEEEEEcCCCCCCCC---CCCCCHHHHHHHHHHHHH
Confidence 45556677899999999999999883 478888888876543 456777776665555544
|
|
| >smart00876 BATS Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-14 Score=111.55 Aligned_cols=93 Identities=51% Similarity=0.750 Sum_probs=84.7
Q ss_pred eeeeeeecCCCCCCCC-CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCCh
Q 016605 268 PINALLAVKGTPLQDQ-KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDF 346 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~-~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~ 346 (386)
+++.|+|.+|||+++. +.++.++++++++++|+++|+..|++++++....++.+..+|.+|||+++.|..++|+.+...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 3678999999999887 789999999999999999999999999999766667788889999999999987999999999
Q ss_pred hHHHHHHHHcCCCc
Q 016605 347 DADQLMFKVLGLTP 360 (386)
Q Consensus 347 ~~~~~~i~~~G~~p 360 (386)
.++++||+++||.|
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999976
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. |
| >PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=112.08 Aligned_cols=91 Identities=43% Similarity=0.662 Sum_probs=70.9
Q ss_pred eeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCC-CChh
Q 016605 269 INALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN-NDFD 347 (386)
Q Consensus 269 ~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~-~~~~ 347 (386)
++.|+|.+||++++.+.++.++++++++++|+++|+..|++++++.....+.+..++.+|||+++.|+ |.++.+ .+.+
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~-ylt~~g~~~~~ 80 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGG-YLTTSGNRSVD 80 (93)
T ss_dssp EEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CS-BTSSSCTSHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECC-ccccCCCCCHH
Confidence 55699999999999999999999999999999999999999999975444577899999999999999 777766 9999
Q ss_pred HHHHHHHHcCCCc
Q 016605 348 ADQLMFKVLGLTP 360 (386)
Q Consensus 348 ~~~~~i~~~G~~p 360 (386)
++.+||+++||+|
T Consensus 81 ~d~~~i~~lG~~P 93 (93)
T PF06968_consen 81 EDIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHHTT-ES
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999987
|
8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A. |
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-12 Score=122.70 Aligned_cols=187 Identities=14% Similarity=0.268 Sum_probs=135.9
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..||+.+|.||..... + ..+.++++||++.+..... .|++.|++.|+ |||+ +++.+.++++.+
T Consensus 116 qvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~Gm-----GEPLln~~~v~~~l~~l 185 (356)
T PRK14455 116 QVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGI-----GEPFDNYDNVMDFLRII 185 (356)
T ss_pred CCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecc-----ccccCCHHHHHHHHHHH
Confidence 5699999999986632 2 2345899999998875432 24667777764 4564 479999999999
Q ss_pred hh-cCc-----EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCee
Q 016605 169 RD-MGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINV 235 (386)
Q Consensus 169 k~-~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~-~Gi~v 235 (386)
++ .|+ .+ ..|+|.. ..+..+.+.++. .+.+++++. ++.++++.+ ..+.++++++++.+.+ .+..+
T Consensus 186 ~~~~g~~~s~r~itvsT~G~~--~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v 263 (356)
T PRK14455 186 NDDKGLAIGARHITVSTSGIA--PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRV 263 (356)
T ss_pred hcccCcccCCCceEEEecCch--HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeE
Confidence 85 465 43 4567865 345666676654 255899999 899998665 4578999999998765 45555
Q ss_pred e--EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
. ..+|-|.+++.+++.+++++++.++ ..|.+.+|+|.++.++. +++.+++.+....++.
T Consensus 264 ~iey~lI~gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky~---~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 264 TFEYILLGGVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDYV---RTPKEDIFAFEDTLKK 324 (356)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCCc---CCCHHHHHHHHHHHHH
Confidence 4 4566677999999999999999984 57889999998877653 4567776666555544
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-12 Score=121.47 Aligned_cols=187 Identities=15% Similarity=0.243 Sum_probs=134.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH------cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~------~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~i 168 (386)
..+||.+|.||+... .+. .+.++.+||++.+..+.. .+++.|++.|. ||| ..++.+.+.++.+
T Consensus 112 Q~GC~l~C~fC~t~~---~g~--~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPLln~d~v~~~l~~l 181 (355)
T TIGR00048 112 QVGCALGCTFCATAK---GGF--NRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPLLNLNEVVKAMEIM 181 (355)
T ss_pred CCCCCCcCCCCCCCC---CCC--CCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----CchhhCHHHHHHHHHHh
Confidence 568999999998653 121 234899999998765432 23566777764 456 4457888888888
Q ss_pred hh-cC--c---EE-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCee
Q 016605 169 RD-MG--M---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGINV 235 (386)
Q Consensus 169 k~-~g--~---~i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~v 235 (386)
++ .| + .+ ..|+|.. +.+++|.+.+++ .+.+++++. ++.++++.+. .++++++++++. +.+.|..+
T Consensus 182 ~~~~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~V 259 (355)
T TIGR00048 182 NDDFGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRV 259 (355)
T ss_pred hcccccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEE
Confidence 63 33 4 34 4467865 568888887887 578999999 8999998763 368999988875 55677765
Q ss_pred e--EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 236 C--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 236 ~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
. ..+|-|++++.+++..+.++++.++ ..|.+.+|.|+++..+ .+++.+++.+.....+.
T Consensus 260 tieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 260 TFEYVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADY---ERPSNEQIDRFAKTLMS 320 (355)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 4 4555677889999999999999984 3678888888877654 44677776665554443
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-12 Score=121.57 Aligned_cols=199 Identities=17% Similarity=0.234 Sum_probs=137.2
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
++. +.+|+.+|.||.... .+. .+.++.+||++.+..+.. .+++.|++.|.|.|+ ..++.+.+.++.+++
T Consensus 107 vSs-q~GC~~~C~FC~tg~---~~~--~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl----~n~~~vi~~l~~l~~ 176 (349)
T PRK14463 107 ISS-QVGCAMGCAFCLTGT---FRL--TRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPL----ANLDNVIPALQILTD 176 (349)
T ss_pred EEe-cCCcCCCCccCCCCC---CCC--CCCCCHHHHHHHHHHHHhcCCccEEEEecCCcch----hcHHHHHHHHHHhhc
Confidence 454 889999999997542 122 345899999998877653 468888888754333 356788888888864
Q ss_pred -cCc-----EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCee--e
Q 016605 171 -MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINV--C 236 (386)
Q Consensus 171 -~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v--~ 236 (386)
.|+ .+ ..|+|.+ + .+.++.+..--.+.+++++. ++.++++.| ..+.++.+++++...+. +..+ .
T Consensus 177 ~~gl~~s~r~itVsTnGl~-~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ie 254 (349)
T PRK14463 177 PDGLQFSTRKVTVSTSGLV-P-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIE 254 (349)
T ss_pred ccccCcCCceEEEECCCch-H-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 454 33 3467853 3 34445443322455899999 999999855 45789999888776654 3444 4
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccee
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
..+|-|.+++.+++.++.++++.++ ..+.+.+|.|.++. +.++++.+++.+.....+..--...++
T Consensus 255 yvLI~GvNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~---~~~~ps~e~i~~f~~~L~~~gi~v~vR 320 (349)
T PRK14463 255 YVMIRGLNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGC---DFRSPTQEAIDRFHKYLLDKHVTVITR 320 (349)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCC---CCCCCCHHHHHHHHHHHHHCCceEEEe
Confidence 5666677999999999999999984 37888888887764 345677887777666665433333333
|
|
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.2e-12 Score=119.66 Aligned_cols=184 Identities=16% Similarity=0.210 Sum_probs=134.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhh-HHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~-~~~l~~~i~~ik~~ 171 (386)
+.+|+++|.||+.... +.. +.++.+||++.+..+.+. .++.|++.|- |||+. ++.+.++++.+++.
T Consensus 104 q~GC~l~C~fC~tg~~---g~~--r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----GEPllN~d~v~~~i~~l~~~ 173 (336)
T PRK14470 104 QAGCALGCAFCATGKL---GLD--RSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----GEPFLNYDEVLRAAYALCDP 173 (336)
T ss_pred CCCcCCCCccccCCCC---CCC--CCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----CccccCHHHHHHHHHHHhCc
Confidence 6799999999987632 222 236888999887765432 4677888773 46644 68888888888742
Q ss_pred ------CcEE-EEecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHHHcCCe--eeE
Q 016605 172 ------GMEV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVREAGIN--VCS 237 (386)
Q Consensus 172 ------g~~i-~~t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~~~Gi~--v~~ 237 (386)
+..+ ..|+|.. + .+++|.+.|. +.+.+|+++. ++.+++|.|. .++++.+++++...+.+.. +..
T Consensus 174 ~~~~~~~~~ItVsTnG~~-p-~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~iey 251 (336)
T PRK14470 174 AGARIDGRRISISTAGVV-P-MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEY 251 (336)
T ss_pred cccccCCCceEEEecCCh-H-HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 2334 4568874 3 4556666665 7899999999 9999999774 4799999999998887765 455
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 298 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~ 298 (386)
.+|-|.+++++|+.++.++++.+. -.+.+.+|.|.++ ...+++.+++.+.....
T Consensus 252 vLI~GvNDseeda~~La~llk~l~---~~vnlI~~N~~~~----~~~~p~~~~i~~f~~~l 305 (336)
T PRK14470 252 VMISGVNVGEEDAAALGRLLAGIP---VRLNPIAVNDATG----RYRPPDEDEWNAFRDAL 305 (336)
T ss_pred EEEecccCCHHHHHHHHHHHhcCC---CeEEEeccCCCCC----CccCCCHHHHHHHHHHH
Confidence 666788999999999999999884 4677778887554 34567777766665554
|
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-12 Score=123.35 Aligned_cols=168 Identities=15% Similarity=0.235 Sum_probs=127.0
Q ss_pred CCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--ecC--CCCHHHHHHHHH
Q 016605 120 KLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLG--MLEKHQAIELKK 192 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t~g--~l~~e~l~~Lk~ 192 (386)
..++++|++++++..... ....+.+.|| |+|..++++.++++.+++.++.+++ |+| ..+++.++++++
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGG-----Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~ 126 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGG-----GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLID 126 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECC-----cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHH
Confidence 458999999999886642 2356777775 3567789999999999988877543 775 458999999999
Q ss_pred hccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCH-HHHHHHHHHHhcCCCCCCeEeee
Q 016605 193 AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 193 aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+|++.+++++++. ++.++++.+....+.+++.++.+.+ ++.+.+.+++-.|-|+ +++.++++++.+++ +..+.+.
T Consensus 127 ~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel~~ti~~L~~lg--~~~V~L~ 203 (404)
T TIGR03278 127 NGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDVLWKTCADLESWG--AKALILM 203 (404)
T ss_pred cCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHHHHHHHHHHHCC--CCEEEEE
Confidence 9999999999999 9999998776666999999999998 4665544444334443 45579999999996 7889999
Q ss_pred eeeecCCC-------C-CCCCCCCCHHHHHHHH
Q 016605 271 ALLAVKGT-------P-LQDQKPVEIWEMIRMI 295 (386)
Q Consensus 271 ~f~P~~gT-------~-l~~~~~~s~~e~~~~~ 295 (386)
+|.+.... + +.+..+.+.+++.+++
T Consensus 204 ~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v 236 (404)
T TIGR03278 204 RFANTEEQGLILGNAPIIPGIKPHTVSEFKNIV 236 (404)
T ss_pred ecccccccccccCCcCcccCCCCCCHHHHHHHH
Confidence 98864422 1 1224566777777763
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-12 Score=122.16 Aligned_cols=189 Identities=15% Similarity=0.229 Sum_probs=131.2
Q ss_pred CCC-CCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCcE--EEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 96 TGG-CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTR--FCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~-C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~~--v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
|.. ||++|.||....... ..+.|+.+.+.+.++.+.+. +... |...|| .|+...+..++.+..+.+..+.
T Consensus 14 t~~~CNL~C~YC~~~~~~~----~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GG-EPlL~~~~f~~~~~~l~~k~~~- 87 (378)
T COG0641 14 TGFECNLDCKYCFYLEKES----LQRIMSDETLEEYVRQYIAASNGDKVTFTWQGG-EPLLAGLDFYRKAVALQQKYAN- 87 (378)
T ss_pred ccCccCCCCCeeCcccCCC----CCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECC-ccccchHHHHHHHHHHHHHHhc-
Confidence 666 999999998875431 11248888888888877764 4455 455654 3333222233333333333333
Q ss_pred CcEE---EEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 172 GMEV---CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 172 g~~i---~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~----~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
+..+ ..|||. ++++.++.|++.|+ .|.+++|+.++++++.|+ ..+++.++++|+.+++.++.+++.+++ .
T Consensus 88 ~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv-~ 165 (378)
T COG0641 88 GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVV-N 165 (378)
T ss_pred CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEE-c
Confidence 5443 467876 79999999999999 999999999999999884 458999999999999999888876664 4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC--CCCCCCCCHHHHHHHH
Q 016605 244 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP--LQDQKPVEIWEMIRMI 295 (386)
Q Consensus 244 get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~--l~~~~~~s~~e~~~~~ 295 (386)
.++.+...++++++.+.+ ...+.|.+.++..++. +... ..+.+++.+.+
T Consensus 166 ~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~-~~~~~~~~~fl 216 (378)
T COG0641 166 RQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEF-SVTAEEYGQFL 216 (378)
T ss_pred hhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCcccccc-ccCHHHHHHHH
Confidence 788899999999999986 6777776665544332 2222 23455555543
|
|
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=118.69 Aligned_cols=205 Identities=23% Similarity=0.368 Sum_probs=149.2
Q ss_pred CCCCCcCCCCCCCCCCCCCC--C-----cccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTG--V-----KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~--~-----~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
-.+|..+|.||++.+..... . -.++....+++++-...... ..++++++.-. .|....++..+++.+
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i~-----~p~~~~d~~~i~~~~ 111 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQIA-----YPRALNDLKLILERL 111 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceeec-----cccccchhhhhhhhh
Confidence 48999999999886532111 0 11233455666655443221 25678876432 234556777788888
Q ss_pred h-hcCcEEEEe--c-CCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC----CCCHHHHHHHHHHHHHc-C-CeeeE
Q 016605 169 R-DMGMEVCCT--L-GMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----TRSYDERLETLKHVREA-G-INVCS 237 (386)
Q Consensus 169 k-~~g~~i~~t--~-g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~----~~s~~~~l~~i~~a~~~-G-i~v~~ 237 (386)
+ ..+.++.++ . .....+.+...++.|.+.+.+.+|.. +++++++++ .|+|++.++.++.+.++ | -.+++
T Consensus 112 ~~~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~i 191 (339)
T COG2516 112 HIRLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGI 191 (339)
T ss_pred hhccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcce
Confidence 7 666664333 1 11228889999999999999999999 899999843 46899999999998775 6 57999
Q ss_pred eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec
Q 016605 238 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 310 (386)
Q Consensus 238 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~ 310 (386)
++++|+|+++.++.+++..+...+ -.+++..|.|..||.|.+..+++.+.+. .+++++.++.+..+.+.
T Consensus 192 hliVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve~Yr-k~q~a~yli~~G~v~~~ 260 (339)
T COG2516 192 HLIVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVERYR-KIQVARYLIGNGEVDLE 260 (339)
T ss_pred eEEeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHHHHH-HHHHHHHHHhcCccchh
Confidence 999999999999999999999885 4678899999999999998887777654 46666676665544433
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-11 Score=115.99 Aligned_cols=195 Identities=15% Similarity=0.196 Sum_probs=135.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh-cC
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD-MG 172 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~-~g 172 (386)
+-+|+.+|.||.... .+.. +.++.+||++.+..+.. .+++.|++.|- ||| .+++.+++.++.+++ .|
T Consensus 110 QvGC~~~C~FC~Tg~---~g~~--rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----GEPL~N~d~vi~al~~l~~~~g 179 (345)
T PRK14466 110 QVGCKMNCLFCMTGK---QGFT--GNLTAAQILNQIYSLPERDKLTNLVFMGM-----GEPLDNLDEVLKALEILTAPYG 179 (345)
T ss_pred CCCCCCCCCCCCCCC---CCCC--CCCCHHHHHHHHHhhhhcCCCCeEEEeee-----CcCcccHHHHHHHHHHHhhccc
Confidence 459999999998553 1222 34899999999987753 25788888773 355 346888888888763 34
Q ss_pred c-----EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCCe--eeEeE
Q 016605 173 M-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGIN--VCSGG 239 (386)
Q Consensus 173 ~-----~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~~-~Gi~--v~~~~ 239 (386)
+ .+ ..|+|.. +. ++++.+..-..+.+++.+. ++.++++.|. .+.++.+++++...+ .|-. +...+
T Consensus 180 ~~~s~r~ItVsT~G~~-~~-i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~L 257 (345)
T PRK14466 180 YGWSPKRITVSTVGLK-KG-LKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIV 257 (345)
T ss_pred cCcCCceEEEEcCCCc-hH-HHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEE
Confidence 3 34 3467743 33 3343332234677899999 8999999884 368999999988544 3434 55556
Q ss_pred EeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccee
Q 016605 240 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 308 (386)
Q Consensus 240 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~ 308 (386)
|-|.+++.+|+.++.++++.++ ..|.+.+|+|.|+.+ ..+++.+.+.+.....+..--...++
T Consensus 258 i~gvND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~---~~~~s~~~~~~F~~~L~~~gi~~tvR 320 (345)
T PRK14466 258 FKGLNDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVD---LEGSDMARMEAFRDYLTSHGVFTTIR 320 (345)
T ss_pred eCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCC---CcCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 6678999999999999999883 689999999999864 34567777666666555533333333
|
|
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=116.01 Aligned_cols=195 Identities=20% Similarity=0.323 Sum_probs=144.0
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
|-+....|...|.||+.....+ +. .+++-|-...++++++-|...|++++.+++... +..-+.+.+.++.+|+.
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~----Pp-PlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k 187 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRN----PP-PLDPNEPENTAEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEK 187 (360)
T ss_pred EEeecCccccCcceeeeecCCC----Cc-CCCCCCcccHHHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHHhh
Confidence 3344889999999999764321 11 145556666777778889999999988766542 34557899999999966
Q ss_pred CcEE---EEecC-CCCHHHHHHHHHhccCeeecccCchHHHHhhhCC-CCCHHHHHHHHHHHHHc--CCeeeEeEEeecC
Q 016605 172 GMEV---CCTLG-MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA--GINVCSGGIIGLG 244 (386)
Q Consensus 172 g~~i---~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~-~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glg 244 (386)
..++ +.++. .-+-+.++.+...|+|.+.+++|+.+++-..++- ..+|.+.+..++.+++. ++-..+.+|+|+|
T Consensus 188 ~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglg 267 (360)
T KOG2672|consen 188 APEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLG 267 (360)
T ss_pred CcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccC
Confidence 5443 22332 2467889999999999999999999888777765 44899999999999986 4556778999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHH
Q 016605 245 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 294 (386)
Q Consensus 245 et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~ 294 (386)
||+|++..+++.++..+ ++-+.+..|++....-+.-..-.+++.+..+
T Consensus 268 etdeei~~tl~dLr~~~--vdv~t~gqym~ptkrhl~v~eyvtpekf~~w 315 (360)
T KOG2672|consen 268 ETDEEIKQTLKDLRAAD--VDVVTFGQYMQPTKRHLKVKEYVTPEKFDYW 315 (360)
T ss_pred CCHHHHHHHHHHHHHcC--CcEEecccccCCccccceeEEeeCHHHHHHH
Confidence 99999999999999996 7888998888633222322233455554433
|
|
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-11 Score=116.88 Aligned_cols=189 Identities=15% Similarity=0.286 Sum_probs=134.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~ 170 (386)
+.||+.+|.||+... .+. .+.++.+||++++..+.. .++..|++.|. ||| .+++.+.+.++.+++
T Consensus 106 q~GC~l~C~FC~t~~---~G~--~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGm-----GEPL~N~d~v~~~l~~l~~ 175 (348)
T PRK14467 106 QVGCAVGCKFCATAK---DGL--IRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGM-----GEPLANYENVRKAVQIMTS 175 (348)
T ss_pred CCCCCCcCcCCCCCC---CCC--cCCCCHHHHHHHHHHHHHHhccCCCCeEEEEcc-----ChhhcCHHHHHHHHHHHcC
Confidence 789999999998753 222 245899999998876554 24677877763 456 567999999999974
Q ss_pred -cCc-----EEE-EecCCCCHHHHHHHHHh----ccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCe
Q 016605 171 -MGM-----EVC-CTLGMLEKHQAIELKKA----GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGIN 234 (386)
Q Consensus 171 -~g~-----~i~-~t~g~l~~e~l~~Lk~a----G~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~-~~Gi~ 234 (386)
.|+ .+. .|+|.. ..++++... .++ +.+++.+. ++.++++.|. .+.++.+++++... +.|-+
T Consensus 176 ~~gl~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~ 252 (348)
T PRK14467 176 PWGLDLSKRRITISTSGII--HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRR 252 (348)
T ss_pred hhccCcCCCcEEEECCCCh--hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCe
Confidence 566 443 457765 334444432 343 44899999 9999999874 36787887776543 56665
Q ss_pred --eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 235 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 235 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+...+|-|.+++.+++.++.++++.++ +...|.+.+|.|.++.++ ++++.+++.+.....+..
T Consensus 253 V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~ 317 (348)
T PRK14467 253 IMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPY---ERPELERVYKFQKILWDN 317 (348)
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHC
Confidence 455566677899999999999999884 356788888888877654 566777766655555543
|
|
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-11 Score=116.63 Aligned_cols=187 Identities=13% Similarity=0.217 Sum_probs=135.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc------CCcEEEEecccCCCCCCh-hhHHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 168 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~------G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~i 168 (386)
..||+.+|.||+... .+. .+.++++||++++..+... ....+++.|+ ||| .+++.+.++++.+
T Consensus 117 QvGC~~~C~FCatg~---~g~--~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~l~~l 186 (356)
T PRK14462 117 QVGCKVGCAFCLTAK---GGF--VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKAIKIF 186 (356)
T ss_pred cccCCCCCccCCCCC---CCC--cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHHHHHh
Confidence 459999999997653 222 2458999999998765542 1346666654 455 5679999999999
Q ss_pred hh-cCcE-----EEE-ecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe-
Q 016605 169 RD-MGME-----VCC-TLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN- 234 (386)
Q Consensus 169 k~-~g~~-----i~~-t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~- 234 (386)
++ .|+. +.+ |.|.. +.+++|.+.++ -.+.+++.+. ++.++++.+. .+.++.+++++. +.+.|-.
T Consensus 187 ~~~~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i 264 (356)
T PRK14462 187 SENDGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRV 264 (356)
T ss_pred cCccCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeE
Confidence 86 4663 333 56765 46777877654 3466789999 8999999873 356889998874 4466765
Q ss_pred -eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 235 -VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 235 -v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+...+|-|.+++.+++..++++++.++ ..|.+.+|.|+++.++ ++++.+++.+...+++.
T Consensus 265 ~ieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 265 MFEYLVIKDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLNS 325 (356)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 555667788999999999999999984 5889999999887765 55677776666555554
|
|
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-11 Score=114.56 Aligned_cols=187 Identities=14% Similarity=0.276 Sum_probs=135.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~- 170 (386)
..+|+.+|.||.... .+.. +.++.+||++++..+... +++.|++.|. ||| .+++.+.+.++.+++
T Consensus 108 qvGC~~~C~FC~tg~---~g~~--rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGm-----GEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 108 QVGCPMACDFCATGK---GGLK--RSLKAHEIVDQVLTVQEDMQRRVSHVVFMGM-----GEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCCCCcCCcCCCCC---CCCc--cccCHHHHHHHHHHHHHHhcCCCCEEEEEec-----CccccCHHHHHHHHHHHhcc
Confidence 459999999997653 2222 238999999998876542 4677888773 355 346889999998874
Q ss_pred cCc---EEE-EecCCCCHHHHHHHHHhc------cC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe
Q 016605 171 MGM---EVC-CTLGMLEKHQAIELKKAG------LT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 234 (386)
Q Consensus 171 ~g~---~i~-~t~g~l~~e~l~~Lk~aG------~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~ 234 (386)
.++ .+. .|.|. .+.+++|.+.+ .+ .+.+++.+. ++.++++.|. .+.++.+++++. +.+.|-.
T Consensus 178 ~~i~~r~itvST~G~--~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~ 255 (345)
T PRK14457 178 LGIGQRRITVSTVGV--PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRR 255 (345)
T ss_pred cCCccCceEEECCCc--hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCE
Confidence 455 333 34664 34578887766 23 477899999 9999999773 368888877755 6677755
Q ss_pred --eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 235 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 235 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+...+|-|++++.+++.++.++++.++ ..|.+.+|.|.++.++ .+++.+++.+....++.
T Consensus 256 I~iey~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 317 (345)
T PRK14457 256 VSFEYILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLEQ 317 (345)
T ss_pred EEEEEEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 566677788999999999999999984 3788889988877654 45677776666555544
|
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-11 Score=115.63 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCChhhHHHH-HHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~---~G~~~v~l~~g~~~~~ge~~~~~~l-~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
++.+++.+.+..... .+...|.++| |||+...++ .++++.+++.|+.+ ..|||.+..+.+..+.+ .+|
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~-~~d 178 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSG------GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLP-YVD 178 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeC------cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHh-hCC
Confidence 578888887765432 2334576765 567666665 69999999888764 56899888788888776 478
Q ss_pred eeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--EeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
.+.+++++. ++.|+++.+ .+++.+++.++.+.+.|+.+.+.+ +.|..++.+++.++++++++++..+..+.+.+|.
T Consensus 179 ~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 889999999 889998865 478999999999999998766554 4556788899999999999986225688888888
Q ss_pred ecCCCC---------CCCCCCCCHHHHHHHHHHH
Q 016605 274 AVKGTP---------LQDQKPVEIWEMIRMIATA 298 (386)
Q Consensus 274 P~~gT~---------l~~~~~~s~~e~~~~~a~~ 298 (386)
|.+..+ +.+.+.++.+++.++...+
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 291 (295)
T TIGR02494 258 RLGENKYRQLGREYPDSEIPDPAEEQLLELKEIF 291 (295)
T ss_pred chhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHH
Confidence 876333 3345667877777655443
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=118.34 Aligned_cols=193 Identities=16% Similarity=0.235 Sum_probs=131.3
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR- 169 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik- 169 (386)
+.+ |.+||.+|.||...... . .+ ..++.+++.+.+..+.+ .+++.|.++|| .|....+..+.++++.++.+.
T Consensus 100 ~~~-t~~Cn~~Cr~C~~~~~~--~-~~-~~~~~~~~~~~i~~i~~~~~i~~VvltGG-EPL~~~d~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 100 LIV-TGGCAINCRYCFRRHFP--Y-QE-NQPNKAQWKEALEYIAQHPEINEVILSGG-DPLMAKDHRLDWLLNLLEQIPH 173 (321)
T ss_pred EEe-CCCcCCcCcCCCCCCcC--C-CC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCc-ccccCCchHHHHHHHHHHhCCC
Confidence 345 99999999999865321 1 11 13566777776766664 48888888874 333222222333343333332
Q ss_pred --hcCcEE---EEecCCCCHHHHHHHHHhccCeee-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--
Q 016605 170 --DMGMEV---CCTLGMLEKHQAIELKKAGLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII-- 241 (386)
Q Consensus 170 --~~g~~i---~~t~g~l~~e~l~~Lk~aG~~~v~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~-- 241 (386)
..++.. .+.+..++++.++.|+++|+..+. +++++.++++ ++..++++.++++|+.+....++
T Consensus 174 ~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvllk 244 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVLLR 244 (321)
T ss_pred CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEecceeeC
Confidence 122221 122235789999999999988775 5888875543 44778999999999986554444
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
|.+++.+++.++.+.+.+++ +..+.++.+.|.+|+. .-..+.++..+++..++..++.
T Consensus 245 giNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~---~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 245 GVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAA---HFDVDDERARALMAELLARLPG 302 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCcc---cccCCHHHHHHHHHHHHHhCCC
Confidence 66789999999999999997 6777888888888755 2356888888988888877765
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=118.47 Aligned_cols=189 Identities=14% Similarity=0.112 Sum_probs=132.8
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhH--HHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNF--NQILEYVKD 167 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~--~~l~~~i~~ 167 (386)
.+.+ |.+||.+|.||...... .... ..+.+++.+.++.+.. .|+..|.|+||. |+.. +.+.++++.
T Consensus 116 ll~~-T~gCn~~C~yC~~~~~~--~~~~--~~~~~~~~~~i~~i~~~~~i~eV~lsGGD------PLl~~d~~L~~ll~~ 184 (331)
T TIGR00238 116 LFLV-KGGCAVNCRYCFRRHFP--YKEN--PGNKKKWQKALDYIAEHPEIIEILISGGD------PLMAKDHELEWLLKR 184 (331)
T ss_pred EEEe-CCCCCCCCcCCCCCCcC--CCCC--CccHHHHHHHHHHHHhCCCcCEEEEECCc------cccCCHHHHHHHHHH
Confidence 4556 99999999999864321 1111 1236777777777765 478899888753 3322 236666666
Q ss_pred Hhhc----CcEEEE-ecC----CCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeE
Q 016605 168 IRDM----GMEVCC-TLG----MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 237 (386)
Q Consensus 168 ik~~----g~~i~~-t~g----~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~ 237 (386)
+++. ++.+.+ +++ .++++.++.|+++|+..+.++.... +++ .++..++++.++++|+.+..
T Consensus 185 L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~ 255 (331)
T TIGR00238 185 LEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLN 255 (331)
T ss_pred HHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEe
Confidence 6653 233333 233 2699999999999998887776554 332 26778999999999998554
Q ss_pred --eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 238 --GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 238 --~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
.++-|.+++.+++.++.+.+.+++ +..+.++.+.|.+|+. .-..+.++..+++..++..++.
T Consensus 256 qtvLl~gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~~---~f~~~~~~~~~i~~~l~~~~sG 319 (331)
T TIGR00238 256 QSVLLRGVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGAK---HFLVPDAEAAQIVKELARLTSG 319 (331)
T ss_pred ecceECCcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCcc---cccCCHHHHHHHHHHHHhcCCC
Confidence 455566888899999999999996 6677778888888763 2346788888888888877765
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-11 Score=112.64 Aligned_cols=187 Identities=17% Similarity=0.307 Sum_probs=132.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhh-
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~- 170 (386)
..||+.+|.||+... .+. .+.++++||++.+...... .+..+++.|| ||| .+++.+.++++.+++
T Consensus 108 qvGC~~~C~FC~tg~---~G~--~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mgg-----GEPLln~d~v~~~l~~l~~~ 177 (342)
T PRK14454 108 QVGCRMGCKFCASTI---GGM--VRNLTAGEMLDQILAAQNDIGERISNIVLMGS-----GEPLDNYENVMKFLKIVNSP 177 (342)
T ss_pred CCCCCCcCCcCCCCC---CCC--cccCCHHHHHHHHHHHHHHhcCCCCCEEEECC-----chhhcCHHHHHHHHHHHhcc
Confidence 779999999997642 222 2348999999998876542 2445554443 456 466889999999985
Q ss_pred cCc-----EEEE-ecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe--ee
Q 016605 171 MGM-----EVCC-TLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN--VC 236 (386)
Q Consensus 171 ~g~-----~i~~-t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~Gi~--v~ 236 (386)
.|+ .+++ |+|... . +++|.+.++ ..+.+++.+. ++.++++.+. ...++.+++++. +.+.|.+ +.
T Consensus 178 ~gi~~~~r~itvsTsG~~p-~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~ie 255 (342)
T PRK14454 178 YGLNIGQRHITLSTCGIVP-K-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFE 255 (342)
T ss_pred cccCcCCCceEEECcCChh-H-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 566 4443 567653 3 566766542 2377899999 8999998873 267777777655 5566766 45
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
..+|-|++++.+++.++.++++.+ ...|.+.+|.|.++..+ .+++.+++.+...+.+.
T Consensus 256 y~LI~gvNDs~eda~~La~llk~l---~~~VnLiPyn~~~~~~~---~~ps~e~l~~f~~~l~~ 313 (342)
T PRK14454 256 YALVKGVNDSKEDAKELGKLLKGM---LCHVNLIPVNEVKENGF---KKSSKEKIKKFKNILKK 313 (342)
T ss_pred EEeECCCCCCHHHHHHHHHHHhcC---CceEEEEecCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 566778899999999999999988 35788888888776644 45677776666555554
|
|
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-11 Score=114.37 Aligned_cols=192 Identities=14% Similarity=0.190 Sum_probs=134.8
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
++.+ |+.|+..|.||...... + .....++.+++.+.++.+.+ .+++.|.|+||+ |....+..++.+ ++.++
T Consensus 111 Ll~v-T~~C~~~CryC~R~~~~--g-~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGD-PLll~d~~L~~i---L~~L~ 182 (417)
T TIGR03820 111 LFLV-SNTCAMYCRHCTRKRKV--G-DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGD-PLLLSDDYLDWI---LTELR 182 (417)
T ss_pred EEEE-cCCcCCCCcCCCCcccC--C-cccccCCHHHHHHHHHHHHhcCCCCEEEEeCCc-cccCChHHHHHH---HHHHh
Confidence 4556 99999999999765321 1 12234789999999988887 489899888753 222222223333 44444
Q ss_pred hc-CcE---EEEe-----cCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--Ee
Q 016605 170 DM-GME---VCCT-----LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SG 238 (386)
Q Consensus 170 ~~-g~~---i~~t-----~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~--~~ 238 (386)
+. +++ +.+. +-.++++.++.|++++..++.+.++..+++ .++..++++.++++|+.+. +.
T Consensus 183 ~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsV 253 (417)
T TIGR03820 183 AIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSV 253 (417)
T ss_pred hcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeece
Confidence 43 333 3222 334789999999999987888888876442 5888999999999999854 45
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 239 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
++-|.+++.+-+.++.+.+.+++ +.-..++..-+.+|+.- =..+.++-++++..+|-.++.
T Consensus 254 LLkGVND~~~~l~~L~~~L~~~g--V~PYYl~~~d~v~G~~h---Frv~~~~g~~I~~~lr~~~sG 314 (417)
T TIGR03820 254 LLAGVNDCPRIMKKLVHKLVANR--VRPYYLYQCDLSEGLSH---FRTPVGKGIEIIESLIGHTSG 314 (417)
T ss_pred EECCcCCCHHHHHHHHHHHHHCC--CeeceeeeccCCCCccc---ccCcHHHHHHHHHHHHHhCCC
Confidence 55678999999999999999987 44445555556667642 235778888888888877665
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-13 Score=117.35 Aligned_cols=194 Identities=21% Similarity=0.318 Sum_probs=146.4
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 171 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~ 171 (386)
++. |..||++|.||-.+... .-.+..+.++.+|+++.+......|++.+-+.| |+|..+.++.+.+..+...
T Consensus 15 isl-te~cnlrc~ycMpsegv-~l~pk~~~lav~eilrl~~~F~~qgv~knrLtg------geptIr~di~~i~~g~~~l 86 (323)
T KOG2876|consen 15 ISL-TEKCNLRCQYCMPSEGV-PLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTG------GEPLIRQDIVPIVAGLSSL 86 (323)
T ss_pred hhh-hhccccccceechhcCC-cCccchhhcchhhhHHhhhhhhHhhhhhhhhcC------CCCcccccccchhhhhhcc
Confidence 344 89999999999765332 122334568999999999999999998886655 5666667777776666543
Q ss_pred -CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCC
Q 016605 172 -GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEA 246 (386)
Q Consensus 172 -g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget 246 (386)
|++ -.++||..+...+-.|.++|++.+++++|+. ++-+.++.+...+..++..++.+.+.|.. +.+++.+--|.+
T Consensus 87 ~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n 166 (323)
T KOG2876|consen 87 PGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLN 166 (323)
T ss_pred cchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccC
Confidence 333 1367899889999999999999999999999 89999999999999999999999998864 444444422445
Q ss_pred HHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 016605 247 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 247 ~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a 296 (386)
.+++.++..+-+.. +--|.+..|+|..|..+......+..+.+.++.
T Consensus 167 ~~ev~Dfv~~tr~~---p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~ 213 (323)
T KOG2876|consen 167 EDEVFDFVLLTRMR---PLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIV 213 (323)
T ss_pred CCcccceeeecCCC---CcceEEEEecccCCCcccccccccHHHHHHHHh
Confidence 55777776665554 556889999999998887766777776665543
|
|
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-10 Score=110.22 Aligned_cols=187 Identities=16% Similarity=0.243 Sum_probs=130.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc----------CCcEEEEecccCCCCCCh-hhHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----------GSTRFCMGAAWRDTIGRK-TNFNQILEY 164 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~----------G~~~v~l~~g~~~~~ge~-~~~~~l~~~ 164 (386)
.-||+.+|.||.... .+. .+.++.+||++.+..+... +++.|++.|+ ||| .+++.+.+.
T Consensus 110 QvGC~~~C~FC~t~~---~g~--~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL~N~d~v~~a 179 (372)
T PRK11194 110 QVGCALECKFCSTAQ---QGF--NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPLLNLNNVVPA 179 (372)
T ss_pred CCCCCCcCCCCCCCC---CCC--CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----CccccCHHHHHHH
Confidence 369999999998653 222 2348999999988665431 2566676664 456 457888899
Q ss_pred HHHHh-hcC--c---EEEE-ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHH-HHHcC
Q 016605 165 VKDIR-DMG--M---EVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAG 232 (386)
Q Consensus 165 i~~ik-~~g--~---~i~~-t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~-a~~~G 232 (386)
++.++ +.| + .+.+ |.|.. ..+++|.+..--.+.+++.+. ++.++++.|. ...++.+++++. +.+.|
T Consensus 180 l~~l~~~~g~~i~~r~itVsTsG~~--~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~ 257 (372)
T PRK11194 180 MEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSN 257 (372)
T ss_pred HHHHhhhhccCcCCCeEEEECCCCc--hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcc
Confidence 98887 344 3 4433 56754 346666665422455689988 8999999873 356778777655 44453
Q ss_pred -----CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 233 -----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 233 -----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.+...+|-|.+++.+++.+++++++.++ ..|.+.+|.|+++.++ ++++.+++.+.....+.
T Consensus 258 ~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~---~~VnLIPYN~~~~~~~---~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 258 ANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPY---GRSSNSRIDRFSKVLME 324 (372)
T ss_pred cCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 45777788899999999999999999984 4889999999887655 45677776665555544
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-10 Score=108.75 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=131.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH---cCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~---~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~ 171 (386)
..||+.+|.||+... .+.. +.++.+||++.+-.+.+ ..+..|++.|- ||| .+++.+.+.++.+++.
T Consensus 112 QvGC~m~C~FC~tg~---~g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmGm-----GEPL~N~d~V~~~~~~l~~~ 181 (342)
T PRK14465 112 QIGCTLNCKFCATAK---LEFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMGM-----GEPMHNYFNVIRAASILHDP 181 (342)
T ss_pred cCCCCCCCCCCcCCC---CCcc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEcC-----CcchhhHHHHHHHHHHHhCh
Confidence 559999999998753 2322 34799999998876654 24667777662 566 5568999999988742
Q ss_pred ---Cc---EE-EEecCCCCHHHHHHHHH-hccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHH-HcCCeee--
Q 016605 172 ---GM---EV-CCTLGMLEKHQAIELKK-AGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVR-EAGINVC-- 236 (386)
Q Consensus 172 ---g~---~i-~~t~g~l~~e~l~~Lk~-aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~-~~Gi~v~-- 236 (386)
++ .+ ..|+|.+ +. +.+|.+ ..--.+.+|+++. ++.+.++.| ..+.++.+++++... +.|-.+.
T Consensus 182 ~~~~~~~r~itvST~G~~-~~-i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ie 259 (342)
T PRK14465 182 DAFNLGAKRITISTSGVV-NG-IRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFE 259 (342)
T ss_pred hhhcCCCCeEEEeCCCch-HH-HHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 22 33 4568866 44 445543 3334788999999 899999876 447899999998644 6676655
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
..++-|.+++.+++.++.++++.++ ..+.+.+|.|. + .+.++++.+++.+...+.+.
T Consensus 260 yvLI~GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~~-~---~~~~~ps~e~i~~F~~~L~~ 316 (342)
T PRK14465 260 YVMIPGVNMGRENANKLVKIARSLD---CKINVIPLNTE-F---FGWRRPTDDEVAEFIMLLEP 316 (342)
T ss_pred EEEECCccCCHHHHHHHHHHHhhCC---CcEEEEccCCC-C---CCCCCCCHHHHHHHHHHHHH
Confidence 5556677999999999999999985 45777777773 3 45667888887766665544
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=104.34 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChh-hHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.+++|++++.+...... +...|+++| |||+ ..+.+.++++.+|+.|+.+ ..|+|..+.+.++.+... +
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SG------GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~ 90 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSG------GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-C 90 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeC------chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-c
Confidence 38999999988765432 334677776 4664 4466789999999999985 458999999999998875 8
Q ss_pred CeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 196 TAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 196 ~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
|.+.+++.+. ++.|.++. +.+.+.+++.++.+.+.|+. +.+.+|.|++++.+++..+++++++++ ++.+.+.+|
T Consensus 91 D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~--~~~~~llpy 167 (213)
T PRK10076 91 DEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG--IKQIHLLPF 167 (213)
T ss_pred CEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEecC
Confidence 9999999999 88898885 46789999999999999976 566777788889999999999999995 678888888
Q ss_pred eecCC---------CCCCCCCCCCHHHHHHHHHHHHH
Q 016605 273 LAVKG---------TPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 273 ~P~~g---------T~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
.|... .++.+.++++.+++.++..+++.
T Consensus 168 h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~ 204 (213)
T PRK10076 168 HQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213)
T ss_pred CccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHH
Confidence 88542 24556677788777666666654
|
|
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-10 Score=108.33 Aligned_cols=193 Identities=16% Similarity=0.254 Sum_probs=132.0
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC--CcEEEEecccCCCCCChhhHHHHHHHHHHHhh---
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--- 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G--~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~--- 170 (386)
..+|+++|.||.... .+. .+.++.+||++.+..+...| ++.|++.|- |||+...++.+.++.+++
T Consensus 107 qvGC~~~C~FC~tg~---~g~--~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGm-----GEPLln~~v~~~i~~l~~~~~ 176 (347)
T PRK14453 107 QCGCGFGCRFCATGS---IGL--KRNLTADEITDQLLYFYLNGHRLDSISFMGM-----GEALANPELFDALKILTDPNL 176 (347)
T ss_pred CCCcCCCCCCCCCCC---CCC--cccCCHHHHHHHHHHHHhcCCCcceEEEeec-----CCccCCHHHHHHHHHHhcccc
Confidence 568999999998763 222 33589999999998776554 777887763 456555668888877764
Q ss_pred cCcE---E-EEecCCCCHHHHHHHHHhc-cCeeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCe--eeEe
Q 016605 171 MGME---V-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGIN--VCSG 238 (386)
Q Consensus 171 ~g~~---i-~~t~g~l~~e~l~~Lk~aG-~~~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~-~~Gi~--v~~~ 238 (386)
.++. + ..|+|... .++.|.+.. -..+.+++.+. ++.++++.+. ...++.+++++... +.|.. +...
T Consensus 177 ~~~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~ 254 (347)
T PRK14453 177 FGLSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYI 254 (347)
T ss_pred cCCCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 2333 3 34678653 233333321 22345589998 8888887763 36788888776644 45655 5666
Q ss_pred EEeecCCCHHHHHHHHHHHhcCCC--CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 239 GIIGLGEAEEDRVGLLHTLATLPT--HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 239 ~i~Glget~ed~~~~l~~l~~l~~--~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+|-|.+++.+++.+++++++.++. .+..|.+.+|+|.++.+ .+..+++.+++.+.....+..
T Consensus 255 LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~-~~~~~ps~e~v~~f~~~L~~~ 318 (347)
T PRK14453 255 MLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP-FKFQSSSAGQIKQFCSTLKSA 318 (347)
T ss_pred eECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC-ccCCCCCHHHHHHHHHHHHHC
Confidence 777889999999999999998731 25688999999987643 235667788777666665543
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-10 Score=107.38 Aligned_cols=203 Identities=20% Similarity=0.285 Sum_probs=137.6
Q ss_pred HHHHHhhcCCCeeEEEEeeeecCCCCCcC----CCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEe----
Q 016605 74 AQVHRHAHNFREVQQCTLLSIKTGGCSED----CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG---- 145 (386)
Q Consensus 74 a~~~r~~~~g~~v~~~~~i~i~t~~C~~~----C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~---- 145 (386)
|.+.+++= .-.-+...-++. .++|+.. |+||.-... +.. ...++|.|+++++.+.+.|++.|-++
T Consensus 170 A~vv~qHP-~yp~~vi~EiET-yRGC~r~~~ggCSFCtEp~~---g~~--~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~d 242 (560)
T COG1031 170 AEVVKQHP-NYPEYVICEIET-YRGCPRRVSGGCSFCTEPVR---GRP--EFRPPEDVVEEVKALYRAGVRHFRLGRQAD 242 (560)
T ss_pred chHHHhCC-CCcceEEEEEee-ccCCcccccCCCccccCcCc---CCc--ccCCHHHHHHHHHHHHHhccceeeeccccc
Confidence 34555552 211133334565 8899976 999986632 222 23699999999999999999887542
Q ss_pred ---cccCCCCCC--hhhHHHHHHHHHHHhhc--CcE-EEEe---cCCC------CHHHHHHHHHhc--cCeeecccCch-
Q 016605 146 ---AAWRDTIGR--KTNFNQILEYVKDIRDM--GME-VCCT---LGML------EKHQAIELKKAG--LTAYNHNLDTS- 205 (386)
Q Consensus 146 ---~g~~~~~ge--~~~~~~l~~~i~~ik~~--g~~-i~~t---~g~l------~~e~l~~Lk~aG--~~~v~i~le~~- 205 (386)
-+..+.+++ ..+-+.+-++.+.++.. ++. +++. ++.+ +++.++.+.++| =|...+++||+
T Consensus 243 ifsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaD 322 (560)
T COG1031 243 IFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESAD 322 (560)
T ss_pred eeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccC
Confidence 111222221 12345555555666543 333 2222 2222 456677777775 35678999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCC-------e---eeEeEEeec-CCCHHHHHHHHHHHhcCCC---CCCeEeeee
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAGI-------N---VCSGGIIGL-GEAEEDRVGLLHTLATLPT---HPESVPINA 271 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~Gi-------~---v~~~~i~Gl-get~ed~~~~l~~l~~l~~---~~~~v~~~~ 271 (386)
+.+.++-+-..+.++++++++.+.+.|- + -++++++|+ |||.+.+.-..+|++++=. -+..|.+-.
T Consensus 323 p~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRq 402 (560)
T COG1031 323 PRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQ 402 (560)
T ss_pred HHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeee
Confidence 7887776667799999999999998653 2 478999999 9999999988888877521 156788999
Q ss_pred eeecCCCCCCCC
Q 016605 272 LLAVKGTPLQDQ 283 (386)
Q Consensus 272 f~P~~gT~l~~~ 283 (386)
.+++|||+++..
T Consensus 403 V~~fpgT~~~~~ 414 (560)
T COG1031 403 VVVFPGTPMWER 414 (560)
T ss_pred EeecCCCchhhh
Confidence 999999999754
|
|
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-09 Score=102.51 Aligned_cols=190 Identities=15% Similarity=0.218 Sum_probs=133.1
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-----------------CCcEEEEecccCCCCCCh-hh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----------------GSTRFCMGAAWRDTIGRK-TN 157 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-----------------G~~~v~l~~g~~~~~ge~-~~ 157 (386)
.-||+..|.||+... .+.. +.++..||++.+..+.+. .++.|++.|- ||| .+
T Consensus 114 QvGC~mgC~FCaTG~---~G~~--RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGM-----GEPL~N 183 (371)
T PRK14461 114 QAGCGMGCVFCATGT---LGLL--RNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGM-----GEPFAN 183 (371)
T ss_pred cCCccCCCCcccCCC---CCcc--cCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEcc-----CCchhh
Confidence 459999999998653 2322 459999999988766431 2566776663 566 56
Q ss_pred HHHHHHHHHHHhh-c--Cc---EE-EEecCCCCHHHHHHHHHhcc-CeeecccCch-HHHHhhhCC---CCCHHHHHHHH
Q 016605 158 FNQILEYVKDIRD-M--GM---EV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIIT---TRSYDERLETL 225 (386)
Q Consensus 158 ~~~l~~~i~~ik~-~--g~---~i-~~t~g~l~~e~l~~Lk~aG~-~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i 225 (386)
++.+++.++.+.+ . ++ .+ ..|.|. ...+++|.+-++ -.+.+|+-+. ++.++++.| ..+.++.++++
T Consensus 184 ydnV~~ai~il~d~~g~~is~R~ITVST~Gi--vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~ 261 (371)
T PRK14461 184 YDRWWQAVERLHDPQGFNLGARSMTVSTVGL--VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAAT 261 (371)
T ss_pred HHHHHHHHHHhcCccccCcCCCceEEEeecc--hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHH
Confidence 7899999998863 2 33 13 334564 455666766543 3477899999 899999988 34889999998
Q ss_pred HHHHH-cCCe--eeEeEEeecCCCHHHHHHHHHHHhcCCCC---CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 016605 226 KHVRE-AGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTH---PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 299 (386)
Q Consensus 226 ~~a~~-~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~---~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R 299 (386)
+...+ .|-. +...+|=|.+++.+|..++.++++.++.. .-+|.+.+|.|+++.++. +++.+.+.+...+.+
T Consensus 262 ~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~---~ps~~~i~~F~~~L~ 338 (371)
T PRK14461 262 RDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG---RSERERVTTFQRILT 338 (371)
T ss_pred HHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC---CCCHHHHHHHHHHHH
Confidence 87544 4544 45556668899999999999999987210 247899999999988764 356676665555544
Q ss_pred H
Q 016605 300 I 300 (386)
Q Consensus 300 ~ 300 (386)
.
T Consensus 339 ~ 339 (371)
T PRK14461 339 D 339 (371)
T ss_pred H
Confidence 3
|
|
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-10 Score=104.86 Aligned_cols=188 Identities=14% Similarity=0.236 Sum_probs=131.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-Cc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~ 173 (386)
..+|+.+|.||.... .+. .+.++.+||++.+..+.+. .++.|++.|-|.|+ .+++.+++.++.+.+. ++
T Consensus 103 QvGC~~~C~FC~tg~---~g~--~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl----~N~d~vl~ai~~l~~~~~i 173 (344)
T PRK14464 103 QVGCAVGCVFCMTGR---SGL--LRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPA----HNLDNVLEAIDLLGTEGGI 173 (344)
T ss_pred cCCcCCCCCcCcCCC---CCC--CCCCCHHHHHHHHHHHHhcCCCCEEEEeccCccc----CCHHHHHHHHHHhhchhcC
Confidence 779999999997653 222 2348999999998877663 57888888744333 4568888888877532 22
Q ss_pred --E-E-EEecCCCCHHHHHHHHHhccC-eeecccCch-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCeee--EeEEe
Q 016605 174 --E-V-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGINVC--SGGII 241 (386)
Q Consensus 174 --~-i-~~t~g~l~~e~l~~Lk~aG~~-~v~i~le~~-~~~~~~i~~~---~s~~~~l~~i~~a~-~~Gi~v~--~~~i~ 241 (386)
. + ..|.|. ....++|.+.++. .+.+++.+. ++.++++.|. .+.++.+++++... +.|-.+. ..++=
T Consensus 174 ~~r~itiST~G~--~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~ 251 (344)
T PRK14464 174 GHKNLVFSTVGD--PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLE 251 (344)
T ss_pred CCceEEEecccC--chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeC
Confidence 2 2 234553 4446777664432 456799999 8999998873 37899998887754 4565544 44455
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016605 242 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 242 Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
|.+++.+++.++.++++.+ .-.+.+.+|.|++|..+. .++.+++.+.....+.
T Consensus 252 GVNDs~e~a~~L~~~l~~~---~~~vNLIPyN~v~g~~~~---rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 252 GVNDSDEEMDGIVRLLKGK---YAVMNLIPYNSVDGDAYR---RPSGERIVAMARYLHR 304 (344)
T ss_pred CCCCCHHHHHHHHHHHhcc---ccccceecCCccCCCCcc---CCCHHHHHHHHHHHHH
Confidence 7899999999999999987 356788888998887653 4566666665555544
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=104.29 Aligned_cols=193 Identities=15% Similarity=0.183 Sum_probs=133.7
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGM 173 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~ 173 (386)
||.|-++|.||-..... ..++.+ ++++||+...-...+ .-+..+++.+|--- ..+...+.+.+.++.++ +.++
T Consensus 61 TN~CiyDC~YCINr~s~--~~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~--~~DyTmE~mi~var~LRle~~f 135 (404)
T COG4277 61 TNFCIYDCAYCINRSSN--DTPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIK--NPDYTMEEMIEVARILRLEHKF 135 (404)
T ss_pred hhhHHHhhHHHhccccC--CCcccc-cCHHHHHHHHHHHHHHhhhhhheecccccc--CcchHHHHHHHHHHHHhhcccc
Confidence 99999999999875432 334444 899999987655544 45667777665421 22356788888888877 4434
Q ss_pred EEEEe----cCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHc---------------CC
Q 016605 174 EVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA---------------GI 233 (386)
Q Consensus 174 ~i~~t----~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~---------------Gi 233 (386)
.-.++ +|. +++.+++.-.. +|++++++|.. ++.++.+.+.+++-++++.+.+++.. .+
T Consensus 136 ~GYIHlK~IPga-s~~li~eagly-adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~f 213 (404)
T COG4277 136 RGYIHLKIIPGA-SPDLIKEAGLY-ADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEF 213 (404)
T ss_pred CcEEEEEecCCC-CHHHHHHHhhh-hheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccc
Confidence 32222 342 45544444332 79999999999 88999999998888888877776651 01
Q ss_pred -e--eeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 016605 234 -N--VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 234 -~--v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a 296 (386)
+ -++.+|+|- +++++++...-..+-.-- ....|.+..|.|++++++.....++.....++++
T Consensus 214 apaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y-~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQ 279 (404)
T COG4277 214 APAGQSTQMIVGADGETDEDILSRSENLYGRY-SLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQ 279 (404)
T ss_pred cCCCCceEEEEecCCCchHHHHHHHHHHhhcc-ceeEEEeecccccCCCCCCcccCCchhHHHHHHH
Confidence 1 256799999 999999999888884332 3789999999999999876544444444455544
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-09 Score=97.23 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=95.2
Q ss_pred CCCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE
Q 016605 96 TGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~ 174 (386)
+.+||++|.||......... ......++.+++++.+..+...+...|+++| |||+..+++.++++.+++.|+.
T Consensus 29 ~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTG------GEPll~~~l~~li~~l~~~g~~ 102 (238)
T TIGR03365 29 TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSG------GNPALQKPLGELIDLGKAKGYR 102 (238)
T ss_pred eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeC------CchhhhHhHHHHHHHHHHCCCC
Confidence 78999999999865322111 1123348999999998887666788888876 5788888999999999988888
Q ss_pred E-EEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 175 V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 175 i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
+ ..|||.+..+. +++ ++.+.++++.... ...+.++...++++.+.+ +..+.+.++++
T Consensus 103 v~leTNGtl~~~~---l~~--~d~v~vs~K~~~s-----g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 103 FALETQGSVWQDW---FRD--LDDLTLSPKPPSS-----GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EEEECCCCCcHHH---Hhh--CCEEEEeCCCCCC-----CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 5 56799876652 333 5688888886521 112358888888888887 67788888876
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-10 Score=103.30 Aligned_cols=163 Identities=22% Similarity=0.354 Sum_probs=115.7
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCC-----cccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGV-----KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYV 165 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~-----~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i 165 (386)
+.+ |+.||.+|.||+.+... .+. ...+..+.++|.+++......|+ .++| |+| ...++..+++
T Consensus 32 lFv-TG~C~~~CfYCPvs~~r-~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siTG------GdPl~~ieR~~~~i 100 (353)
T COG2108 32 LFV-TGLCNRSCFYCPVSDER-KGKDVIYANERPVKSVEDIIEEAKLMDALGA---SITG------GDPLLEIERTVEYI 100 (353)
T ss_pred EEE-ecccCCCcccCcCCHHh-cCCcceeecccccCcHHHHHHHHHHhccccc---cccC------CChHHHHHHHHHHH
Confidence 445 99999999999987532 111 11234677888887776655554 3444 456 5568999999
Q ss_pred HHHhh-cC--cEE--EEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 166 KDIRD-MG--MEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 166 ~~ik~-~g--~~i--~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
+.+|+ .| +.+ .+|.-..+++.++.|.+||+|-|-+.... -..+..+.+++.++.+++.|+.++.-+.
T Consensus 101 r~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~--------~~~~~~e~~i~~l~~A~~~g~dvG~EiP 172 (353)
T COG2108 101 RLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPR--------PGSKSSEKYIENLKIAKKYGMDVGVEIP 172 (353)
T ss_pred HHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCC--------ccccccHHHHHHHHHHHHhCccceeecC
Confidence 99984 33 333 33334579999999999999999875531 1134678889999999999998877665
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.-.|+ .+.+.+.++++.+.+ .+++.++.+--..
T Consensus 173 aipg~-e~~i~e~~~~~~~~~--~~FlNiNELE~sE 205 (353)
T COG2108 173 AIPGE-EEAILEFAKALDENG--LDFLNINELEFSE 205 (353)
T ss_pred CCcch-HHHHHHHHHHHHhcc--cceeeeeeeeecc
Confidence 43343 567889999999885 7889988876533
|
|
| >KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-10 Score=105.02 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=128.6
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--hhH-HHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNF-NQILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--~~~-~~l~~~i~ 166 (386)
-++.| ..+|-..|.||-..... .... ..+++++++.++...+.|+.+|.+.+-.+..+|.+ ... .-+..+++
T Consensus 189 eIi~i-ntgclgaCtyckTkhar-g~l~---sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~ 263 (547)
T KOG4355|consen 189 EIISI-NTGCLGACTYCKTKHAR-GLLA---SYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVE 263 (547)
T ss_pred EEEEe-ccccccccccccccccc-cccc---cCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHH
Confidence 35666 67999999999753211 1222 25899999999999999999998876444434432 112 22333344
Q ss_pred HHhhc-CcEEEEecCCCCHHHHHHHHHh----ccCe-eecccCch-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeE
Q 016605 167 DIRDM-GMEVCCTLGMLEKHQAIELKKA----GLTA-YNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCS 237 (386)
Q Consensus 167 ~ik~~-g~~i~~t~g~l~~e~l~~Lk~a----G~~~-v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~--~Gi~v~~ 237 (386)
.+.+. ++.+-.||-..--|.+++++.. .+-. +++.+++. +.++-.+.+.....+.......+.+ -||.+.+
T Consensus 264 ~iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IAT 343 (547)
T KOG4355|consen 264 VIPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIAT 343 (547)
T ss_pred hcchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEee
Confidence 44322 2222233332223333333321 1111 33567888 8888888775433333334444555 4999999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHH
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 294 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~ 294 (386)
++|.|+ +||++|+.++++++++.. ..++.++.|.|.||||-+.....+..+..+.
T Consensus 344 DiIcgFPtETdeDFeeTmeLv~kYK--FPslfInQfyPRpGTPAAkmkki~a~~vkkR 399 (547)
T KOG4355|consen 344 DIICGFPTETDEDFEETMELVRKYK--FPSLFINQFYPRPGTPAAKMKKIPAVEVKKR 399 (547)
T ss_pred eeeecCCCCchHHHHHHHHHHHHcc--CchhhhhhcCCCCCChHHhhhcccHHHHHHH
Confidence 999999 999999999999999995 7789999999999999877666655554443
|
|
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-09 Score=89.09 Aligned_cols=171 Identities=18% Similarity=0.264 Sum_probs=116.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHH-HcCCcEEEEecccCCCCCChhhHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~-~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~i 168 (386)
++....+-+||+.|.||...............++++|+.+.+.++. +.|.+.|-++|+ .|+.+ .+.++++|+-+
T Consensus 42 GiaTAD~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~-EP~l~----~EHvlevIeLl 116 (228)
T COG5014 42 GIATADTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGA-EPILG----REHVLEVIELL 116 (228)
T ss_pred ceeeccccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCC-Ccccc----HHHHHHHHHhc
Confidence 3333347799999999976533223334566799999998886654 578888877764 34433 47888888876
Q ss_pred hhcCcEEEEecCC---CCHHHHHHHHHhccCeeecccCch-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEee
Q 016605 169 RDMGMEVCCTLGM---LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIG 242 (386)
Q Consensus 169 k~~g~~i~~t~g~---l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~G 242 (386)
.+..+ +.-|||. .++..+++|...--..|-+++.+. ++.+.+|.. +.-+...+++++.+++.|+.+...++++
T Consensus 117 ~~~tF-vlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~ 195 (228)
T COG5014 117 VNNTF-VLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYD 195 (228)
T ss_pred cCceE-EEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhc
Confidence 44322 4456776 378888888653223466789999 899999974 2247888999999999999998888887
Q ss_pred cCCCHHHH-HHHHHHHhcCCCCCCeEe
Q 016605 243 LGEAEEDR-VGLLHTLATLPTHPESVP 268 (386)
Q Consensus 243 lget~ed~-~~~l~~l~~l~~~~~~v~ 268 (386)
+ ..||. .++...+.+.++-|..+-
T Consensus 196 f--~~Ed~~k~Lak~Lgehp~~P~~ie 220 (228)
T COG5014 196 F--FREDGLKELAKRLGEHPPIPCRIE 220 (228)
T ss_pred c--chhhhHHHHHHHhccCCCCCccee
Confidence 7 23333 345566666553333333
|
|
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.6e-08 Score=90.49 Aligned_cols=182 Identities=18% Similarity=0.308 Sum_probs=123.7
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cC------CcEEEEecccCCCCCCh-hhHHHHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG------STRFCMGAAWRDTIGRK-TNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G------~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ 167 (386)
--||+..|+||+.... +. .+.++..||++.+..+.+ .| ++.|++-|- ||| .+++.+...++.
T Consensus 108 QvGC~~~C~FCaTg~~---G~--~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGM-----GEPl~N~dnV~~a~~i 177 (349)
T COG0820 108 QVGCPVGCTFCATGQG---GL--NRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGM-----GEPLLNLDNVVKALEI 177 (349)
T ss_pred CCCcCCCCCeeccccc---cc--eeccCHHHHHHHHHHHHHhcCccccceeeeEEEecC-----CchhhhHHHHHHHHHh
Confidence 4489999999987642 22 235899999999887663 23 345666553 566 668888888888
Q ss_pred Hh-hcCcE-----E-EEecCCCCHHHHHHHHH-hccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCe
Q 016605 168 IR-DMGME-----V-CCTLGMLEKHQAIELKK-AGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 234 (386)
Q Consensus 168 ik-~~g~~-----i-~~t~g~l~~e~l~~Lk~-aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~-~Gi~ 234 (386)
+. +.|+. + ..|.| +. ..+.+|.+ ..=-.+.+|+.+. ++.++.+.| ..+.++.+++++.-.+ .|-.
T Consensus 178 ~~~~~G~~ls~R~iTvSTsG-i~-~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~r 255 (349)
T COG0820 178 INDDEGLGLSKRRITVSTSG-IV-PRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRR 255 (349)
T ss_pred hcCcccccccceEEEEecCC-Cc-hhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCce
Confidence 87 33332 2 33456 33 44555553 3223567899999 888888776 3378888988888554 4544
Q ss_pred ee--EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHH
Q 016605 235 VC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI 295 (386)
Q Consensus 235 v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~ 295 (386)
|+ ..++=|.++..++..++++++..+ +-+|.+.+|.|+|++.+.. ++.+++.+..
T Consensus 256 Vt~EY~Ll~~VND~~e~A~~L~~ll~~~---~~~VNLIP~Np~~~~~y~r---~~~~~i~~F~ 312 (349)
T COG0820 256 VTFEYVLLDGVNDSLEHAKELAKLLKGI---PCKVNLIPYNPVPGSDYER---SSKERIRKFL 312 (349)
T ss_pred EEEEeeecccccCCHHHHHHHHHHhcCC---CceEEEeecCCCCCCCccC---CcHHHHHHHH
Confidence 44 445557788899999999999887 4589999999999988533 3444444333
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-07 Score=84.26 Aligned_cols=221 Identities=15% Similarity=0.187 Sum_probs=156.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEE--EEecCCCCHHHHHHHHHhcc
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV--CCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i--~~t~g~l~~e~l~~Lk~aG~ 195 (386)
..++.++..+.++.+.+.|++.+-++++..+... | ..+...+.++.+++.+ ..+ .++++ .+.++.++++|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p-~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~ 88 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-P-QMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGV 88 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-c-cCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCc
Confidence 3479999999999999999999988765432111 1 3356677777777543 443 33444 788999999999
Q ss_pred CeeecccCchHHHHhh--hCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecC--CCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 196 TAYNHNLDTSREFYSK--IITTR--SYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~--i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.+.+.+.+.+ .|.. .+++. .++..+++++.+++.|+.+...++.-.+ .+.+++.+.++.+.++| ++.+.+
T Consensus 89 ~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~i~l 165 (265)
T cd03174 89 DEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG--ADEISL 165 (265)
T ss_pred CEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 99999887764 3333 33332 6889999999999999999988876667 99999999999999997 666653
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
. .| ....+++++.+++...+...++..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+
T Consensus 166 ~------Dt----~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G-~~~Gn~~ 234 (265)
T cd03174 166 K------DT----VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG-ERAGNAA 234 (265)
T ss_pred c------hh----cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccc-ccccCcc
Confidence 2 22 1235788899999999988886333221 1112233334567888999877 22210 2356789
Q ss_pred hhHHHHHHHHcCCC
Q 016605 346 FDADQLMFKVLGLT 359 (386)
Q Consensus 346 ~~~~~~~i~~~G~~ 359 (386)
.++++.+++..|+.
T Consensus 235 ~e~~~~~l~~~~~~ 248 (265)
T cd03174 235 TEDLVAALEGLGID 248 (265)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999843
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-09 Score=87.19 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=63.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh---HHHHHHHHHHHhhcC
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDMG 172 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~---~~~l~~~i~~ik~~g 172 (386)
|++||++|.||...... .......++.+.+.+.++.+.+.++..|.+.| |||+. .+.+.++++.+++.+
T Consensus 12 t~~Cnl~C~yC~~~~~~--~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~G------GEPll~~~~~~l~~i~~~~k~~~ 83 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIW--KFKRGKELSEEIIEEIIEELKNYGIKGIVLTG------GEPLLHENYDELLEILKYIKEKF 83 (139)
T ss_dssp EC--SB--TT-TTCCCS---TT-SEEC-HHHHHHHCHHHCCCCCCEEEEEC------STGGGHHSHHHHHHHHHHHHHTT
T ss_pred cCcccccCcCcCCcccC--cccccccccchhhhhhhhHHhcCCceEEEEcC------CCeeeeccHhHHHHHHHHHHHhC
Confidence 67899999999865432 11233346777777777887778888998887 46766 899999999999775
Q ss_pred c-E-EEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 173 M-E-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 173 ~-~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
. . +..++|....+...++....++.+.+++++.
T Consensus 84 ~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~~ 118 (139)
T PF13353_consen 84 PKKIIILTNGYTLDELLDELIEELLDEIDVSVDGP 118 (139)
T ss_dssp -SEEEEEETT--HHHHHHHHHHHHHHTESEEEE--
T ss_pred CCCeEEEECCCchhHHHhHHHHhccCccEEEEEEe
Confidence 5 3 6778888777766654445555565555554
|
|
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.3e-07 Score=84.76 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=106.0
Q ss_pred eeecCCCCCcCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHH-HHcCC--cEEEEecccCCCCCChhhHHHHHH-HHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKA-KEAGS--TRFCMGAAWRDTIGRKTNFNQILE-YVK 166 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~-~~~G~--~~v~l~~g~~~~~ge~~~~~~l~~-~i~ 166 (386)
+|. -.||.+.|.||+....... ........-.+.+.+.++.- .+.+. ..|.+++. ++++........+.. +++
T Consensus 33 inp-y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~-TDpyqp~E~~~~ltR~ile 110 (297)
T COG1533 33 LNP-YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSV-TDPYQPIEKEYRLTRKILE 110 (297)
T ss_pred cCC-cCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecC-CCCCCcchHHHHHHHHHHH
Confidence 444 5699999999986543211 11122222233377666543 32232 33455443 344432111222222 233
Q ss_pred HHhhcCcEEEE-ecCCC---CHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 167 DIRDMGMEVCC-TLGML---EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 167 ~ik~~g~~i~~-t~g~l---~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
.+.+.+..+.+ |=..+ +-+.+..++.-+.-.|.+++-+. +++.+.+-|.. ++++++++++.+.++|+++...+-
T Consensus 111 i~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~ 190 (297)
T COG1533 111 ILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVA 190 (297)
T ss_pred HHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEEe
Confidence 33345555432 32223 55666666676767788899888 56777777744 899999999999999999877665
Q ss_pred eec-CCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 241 IGL-GEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 241 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
.-+ +.|++|+.+.+..+.+.+ +..+..
T Consensus 191 PIiP~~~d~e~e~~l~~~~~ag--~~~v~~ 218 (297)
T COG1533 191 PIIPGLNDEELERILEAAAEAG--ARVVVY 218 (297)
T ss_pred cccCCCChHHHHHHHHHHHHcC--CCeeEe
Confidence 444 778899999999998886 444433
|
|
| >KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=88.34 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=129.6
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----------------
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---------------- 154 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge---------------- 154 (386)
.++| -++|++-|+||-.+-. .+..+ ..+.+.|+++++.+.+.|+++|.+.|-.-+.+.+
T Consensus 223 FvSi-MRGCdNMCtyCiVpft--rGreR--srpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 223 FVSI-MRGCDNMCTYCIVPFT--RGRER--SRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred HHHH-HhccccccceEEEecc--CCccc--CCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 4566 7899999999965422 23333 3689999999999999999999876531111100
Q ss_pred -----------hhhHHHHHHHHHHHh-hcCcEE-EEecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCH
Q 016605 155 -----------KTNFNQILEYVKDIR-DMGMEV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSY 218 (386)
Q Consensus 155 -----------~~~~~~l~~~i~~ik-~~g~~i-~~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~ 218 (386)
.+.|..+++-+.... ++.+.. .-++....+|.++.+++.- +..+.+..++. .++++.++++.+.
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysr 377 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSR 377 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCCh
Confidence 022333444333332 222221 1124557889899887752 44455677888 7899999999999
Q ss_pred HHHHHHHHHHHHc--CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 219 DERLETLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 219 ~~~l~~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
+..++-.+.++.. |....+.+|.|. |||.+|-..++-++++.| .+.+..++|.-..+|..
T Consensus 378 eayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~a 440 (552)
T KOG2492|consen 378 EAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRA 440 (552)
T ss_pred HhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhc--cCeeeeEEeeecccchh
Confidence 9999998888885 778899999999 999999999999999997 66676777765556653
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-06 Score=76.68 Aligned_cols=200 Identities=15% Similarity=0.219 Sum_probs=130.9
Q ss_pred CCCCCc----CCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-C--Cc--EEEE-ecccCCCCCChhhHHHHHHHH
Q 016605 96 TGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G--ST--RFCM-GAAWRDTIGRKTNFNQILEYV 165 (386)
Q Consensus 96 t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G--~~--~v~l-~~g~~~~~ge~~~~~~l~~~i 165 (386)
|.||.. .|..|++..... . ...+.|++......+... . .. .+.+ ++|.... .+....+....++
T Consensus 54 T~GC~w~~~~gC~MCgY~~d~~----~-~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~Il 127 (358)
T COG1244 54 TRGCRWYREGGCYMCGYPADSA----G-EPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRYIL 127 (358)
T ss_pred cCCcceeccCCcceeccccccC----C-CCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHHHH
Confidence 899973 499998764321 1 227888998888776542 1 12 2444 3332211 1112234444455
Q ss_pred HHHhhcC-cE---EEEecCCCCHHHHHHHHHh--cc-CeeecccCch-HHHH-hhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 166 KDIRDMG-ME---VCCTLGMLEKHQAIELKKA--GL-TAYNHNLDTS-REFY-SKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 166 ~~ik~~g-~~---i~~t~g~l~~e~l~~Lk~a--G~-~~v~i~le~~-~~~~-~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
+.+.+.+ ++ +...+..+++|.++.+.+. |. ..|.+|+||+ +++. ..|+++.++++.+++++.++++|+.+.
T Consensus 128 ~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vk 207 (358)
T COG1244 128 ERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVK 207 (358)
T ss_pred HHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCcee
Confidence 5555432 33 3445677899999999987 53 3578999999 8777 568889999999999999999999998
Q ss_pred EeEEeec-----CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC------CCCCCCHHHHHHHHHHHHHhCCC
Q 016605 237 SGGIIGL-----GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 237 ~~~i~Gl-----get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~------~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
+-+++=+ .+..+|....+..+.. ..+.+++++-....||-++ ...||=.+-+.+++.-++...|.
T Consensus 208 tYlllKP~FlSE~eAI~D~i~Si~~~~~---~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 208 TYLLLKPPFLSEKEAIEDVISSIVAAKP---GTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred EEEEecccccChHHHHHHHHHHHHHhcc---CCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 8887644 2233444444443333 3789999998888898643 23445556666677767766664
|
|
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9e-07 Score=84.71 Aligned_cols=202 Identities=16% Similarity=0.174 Sum_probs=142.9
Q ss_pred CCCCCcC---CCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCc-----EEEEecccCCCCCChhhHHHHHHHHHH
Q 016605 96 TGGCSED---CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST-----RFCMGAAWRDTIGRKTNFNQILEYVKD 167 (386)
Q Consensus 96 t~~C~~~---C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~-----~v~l~~g~~~~~ge~~~~~~l~~~i~~ 167 (386)
..-|... |.||+..... ......++..|.+.... ++|.. .+...++ +.+..+.++.+.+++
T Consensus 34 ~~~c~~~~~~C~~cy~~v~~----~~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~-----~d~~c~p~le~~~~r 102 (414)
T COG1625 34 CKDCIPYRFGCDDCYLSVNE----LDTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGN-----GDTFCYPDLEPRGRR 102 (414)
T ss_pred CCcCCCccccccceeeEEec----ccCCCCCHhHhhccccc--ccccccccccceeecCC-----CCcccCcchhhhhhH
Confidence 4456555 9999765421 11123566677765542 23322 1222221 344667888888888
Q ss_pred HhhcC----cEEEEe--cCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE
Q 016605 168 IRDMG----MEVCCT--LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI 240 (386)
Q Consensus 168 ik~~g----~~i~~t--~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i 240 (386)
++..+ +.+..+ +|..+.+..+.+.++|++-+++++.+. +++++++.+.+..++.++.+++..+.++.+.+.++
T Consensus 103 ~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iV 182 (414)
T COG1625 103 ARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIV 182 (414)
T ss_pred HHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEE
Confidence 87654 333333 555678888889999999999999999 99999999999999999999999999999999888
Q ss_pred eecCCC-HHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCcc-eeec
Q 016605 241 IGLGEA-EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAM-VRLS 310 (386)
Q Consensus 241 ~Glget-~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~--~~~~s~~e~~~~~a~~R~~lp~~~-i~i~ 310 (386)
+-.|-| -+++.++++.+.+++ +..+.+..+.|..-|.+.. .++++++++..+-.+.|.+..... +++.
T Consensus 183 l~PGvNdge~L~kT~~dL~~~g--~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V~ 254 (414)
T COG1625 183 LCPGVNDGEELEKTLEDLEEWG--AHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRVT 254 (414)
T ss_pred EcCCcCcHHHHHHHHHHHHHhC--cCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEe
Confidence 867776 799999999999997 6667776677888676543 355677777777666666554433 4443
|
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-06 Score=76.94 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=129.6
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD 170 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~ 170 (386)
.+.+ .+||++|-||+....+..+ .....+++++.+......+.|++.+-++||. || .....+++.++.+..
T Consensus 122 TVFF--sgCnfrCVfCQNwdISq~~--~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~-Pt----p~lp~Ile~l~~~~~ 192 (335)
T COG1313 122 TVFF--SGCNFRCVFCQNWDISQFG--IGKEVTPEDLAEIILELRRHGAKNVNFVGGD-PT----PHLPFILEALRYASE 192 (335)
T ss_pred eEEe--cCcceEEEEecCccccccC--CCeEecHHHHHHHHHHHHHhcCcceeecCCC-CC----CchHHHHHHHHHHhc
Confidence 4555 5999999999887543222 3345899999999999999999999998863 22 356788888888765
Q ss_pred cCcE-EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcC--CeeeEeEEeecCC
Q 016605 171 MGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAG--INVCSGGIIGLGE 245 (386)
Q Consensus 171 ~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~G--i~v~~~~i~Glge 245 (386)
. ++ +.-+|+..++|.++.|... +|.+.-++.-. ++--.+..+.. -|+-+.+++..+.+.+ +-+.--++.|+
T Consensus 193 ~-iPvvwNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPgh-- 268 (335)
T COG1313 193 N-IPVVWNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGH-- 268 (335)
T ss_pred C-CCEEEecCCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCc--
Confidence 4 55 5667888999999999643 55555567666 55555555433 4677778888877763 44444445554
Q ss_pred CHHH-HHHHHHHHhcCCCCCCeEee---eeeeecC-CCCCCC-CCCCCHHHHHHHHHHHHHh
Q 016605 246 AEED-RVGLLHTLATLPTHPESVPI---NALLAVK-GTPLQD-QKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 246 t~ed-~~~~l~~l~~l~~~~~~v~~---~~f~P~~-gT~l~~-~~~~s~~e~~~~~a~~R~~ 301 (386)
.++ -...++|+.+.- ...+.+ .+|.|.- ...+.+ ...++.+|+.+.+..++.+
T Consensus 269 -lecCTkpI~~wiae~~--g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335)
T COG1313 269 -LECCTKPILRWIAENL--GNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335)
T ss_pred -hhhccHHHHHHHHHhC--CCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHc
Confidence 233 466778887763 234444 3455532 122211 2457889988888877754
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.9e-06 Score=70.79 Aligned_cols=95 Identities=18% Similarity=0.319 Sum_probs=63.5
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV 175 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i 175 (386)
..+||.+|.||...... .......++.+++.+.++.... .+..|.++| || ...+.+.++++.+|+.|+.+
T Consensus 22 l~GCnlrC~~C~n~~~~--~~~~g~~lt~eel~~~I~~~~~-~~~gVt~SG------GE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 22 ITGCPLGCKGCHSPESW--HLSEGTKLTPEYLTKTLDKYRS-LISCVLFLG------GE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred eCCCCCCCCCCCChHHc--CCCCCcCCCHHHHHHHHHHhCC-CCCEEEEec------hh-cCHHHHHHHHHHHHHCCCCE
Confidence 56999999999876432 1111234899999999887553 356787776 45 56788999999999888886
Q ss_pred EEecCCCCHHHHHHHHHhccCeeecc
Q 016605 176 CCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 176 ~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.+..|...++..+.+.+. +|.+..+
T Consensus 92 ~l~Tg~~~~~~~~~il~~-iD~l~~g 116 (147)
T TIGR02826 92 CLYTGLEPKDIPLELVQH-LDYLKTG 116 (147)
T ss_pred EEECCCCCHHHHHHHHHh-CCEEEEC
Confidence 553344444555555433 5555543
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-05 Score=74.48 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=122.6
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc-CCcEEEEecccCCCCCChhhHHHHHHHHHHHh
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~-G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik 169 (386)
++.. |..|+..|.||.-...... .... ++.+++.+.+..+++. -+.+|.++||+ +....+..++++++-+++|.
T Consensus 114 Lll~-t~~C~vyCRyCfRr~~~~~--~~~~-~~~~~~~~al~YIa~hPeI~eVllSGGD-PL~ls~~~L~~ll~~L~~Ip 188 (369)
T COG1509 114 LLLV-TGVCAVYCRYCFRRRFVGQ--DNQG-FNKEEWDKALDYIAAHPEIREVLLSGGD-PLSLSDKKLEWLLKRLRAIP 188 (369)
T ss_pred EEEe-cCcccceeeeccccccccc--cccc-CCHHHHHHHHHHHHcCchhheEEecCCC-ccccCHHHHHHHHHHHhcCC
Confidence 3444 9999999999975533211 1112 5888888888887764 47788777764 44444555556666555554
Q ss_pred hc-CcEE-----EEecCCCCHHHHHHHHHhccCe-eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee-e-EeEE
Q 016605 170 DM-GMEV-----CCTLGMLEKHQAIELKKAGLTA-YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV-C-SGGI 240 (386)
Q Consensus 170 ~~-g~~i-----~~t~g~l~~e~l~~Lk~aG~~~-v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v-~-~~~i 240 (386)
.. .+.+ .+.+.-++++..+.|++.+... +...+.... .--.+..++++.++++|+.+ + +.++
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~---------Eit~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPN---------EITPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChh---------hcCHHHHHHHHHHHHcCceeecchhee
Confidence 22 1222 2334557888888888754322 222222221 11345678999999999984 3 3455
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 241 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 241 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
=|.+++.+-+.++.+.+...+ +.-..++..-+.+|+. .-..+.++-.+++...|-.++.
T Consensus 260 rGVND~~evl~~L~~~L~~~g--V~PYYl~~~D~~~G~~---hfr~~i~~~~~i~~~lr~~~SG 318 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAG--VKPYYLHQLDLVQGAA---HFRVPIAEGLQIVEELRGRTSG 318 (369)
T ss_pred cccCCCHHHHHHHHHHHHHcC--CcceEEeccCccCCcc---ceeccHHHHHHHHHHHHHhCCC
Confidence 588999999999999999886 4334444444455654 2245778888888877765543
|
|
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.6e-07 Score=72.08 Aligned_cols=80 Identities=24% Similarity=0.456 Sum_probs=45.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCChhh---HHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTN---FNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~--~~v~l~~g~~~~~ge~~~---~~~l~~~i~~ik~ 170 (386)
|.+||++|.||...... .......++.+++.+.++.+...+. ..|.++| |||+. .+.+.++++.+++
T Consensus 5 t~~Cnl~C~~C~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G------GEPll~~~~~~l~~~i~~~~~ 76 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSW--SPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTG------GEPLLYLNPEDLIELIEYLKE 76 (119)
T ss_dssp -S--S---TTTS-TTTS--ST-GGGS--HHHHHHHHHHHHHTT----EEEEES------SSGGGSTTHHHHHHHHCTSTT
T ss_pred cCCcCCCCccCCcCccC--CCccCCcccHhHHHHHHHHHHhcCCceEEEEEEC------CCCccccCHHHHHHHHHHHHh
Confidence 88999999999875322 1123345789999999987777765 4577776 45653 3789999999987
Q ss_pred cC--cEE-EEecCCCC
Q 016605 171 MG--MEV-CCTLGMLE 183 (386)
Q Consensus 171 ~g--~~i-~~t~g~l~ 183 (386)
.+ +.+ ..|||.+.
T Consensus 77 ~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 77 RGPEIKIRIETNGTLP 92 (119)
T ss_dssp -----EEEEEE-STTH
T ss_pred hCCCceEEEEeCCeec
Confidence 76 664 56788765
|
|
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.4e-06 Score=78.61 Aligned_cols=144 Identities=18% Similarity=0.146 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-E-EEecCC---CCHHHHHHHHHhc
Q 016605 121 LMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V-CCTLGM---LEKHQAIELKKAG 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i-~~t~g~---l~~e~l~~Lk~aG 194 (386)
.-+.|+|.+.++.++... +....++. ++|||+..++|.++++.+++.|+. + ..|||. .+++.++.|++||
T Consensus 90 Ept~eqi~~Ml~~lk~e~p~~~~aIq~----tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag 165 (475)
T COG1964 90 EPTLEQIREMLRNLKKEHPVGANAVQF----TGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAG 165 (475)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCceeEe----cCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcC
Confidence 478999999999988753 22333332 236888999999999999998875 4 345665 4799999999999
Q ss_pred cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 195 LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 195 ~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
++.+.++.|+. ++.+.++ .-++-.++++++++|+. +...-.+--|.++.++.+++++.... ++.+.-..|
T Consensus 166 ~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n---~dvVrgVnf 237 (475)
T COG1964 166 VNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNN---IDVVRGVNF 237 (475)
T ss_pred CcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhc---cccccccce
Confidence 99999999999 7776665 23333489999999986 33222221277889999999999765 444444445
Q ss_pred eecC
Q 016605 273 LAVK 276 (386)
Q Consensus 273 ~P~~ 276 (386)
.|+.
T Consensus 238 QPVs 241 (475)
T COG1964 238 QPVS 241 (475)
T ss_pred EEEE
Confidence 5543
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00028 Score=67.82 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeccc-----CCCCCCh--hhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAW-----RDTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~-----~~~~ge~--~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.++.+++.+.++.+.+.|+..+-++.+. ....|.+ ...+++.++.+.++...+.+...+|..+.+.++...++
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~ 99 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDA 99 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHC
Confidence 3899999999999999999988775211 1111211 23455555555444333334555677778889999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
|++.+.+.... ...+...+.++.+++.|+.+...++..+.-+++.+.+.++.+.+.| ++.+.+
T Consensus 100 gvd~iri~~~~-----------~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G--a~~i~i---- 162 (333)
T TIGR03217 100 GARTVRVATHC-----------TEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG--ADCVYI---- 162 (333)
T ss_pred CCCEEEEEecc-----------chHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC--CCEEEE----
Confidence 99998875421 2235677899999999999988888877788999999999999986 554422
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecCcccc--cChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVR--FSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~g~~~--~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
.+|- ....++++.+++...|..++ +..+.+- +..+ +.-.....++.+||+.+ +.|=. ..+.+.+.+
T Consensus 163 --~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H-~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G-~~aGN~~~E 234 (333)
T TIGR03217 163 --VDSA----GAMLPDDVRDRVRALKAVLKPETQVGFH-AHHNLSLAVANSIAAIEAGATRIDASLRGLG-AGAGNAPLE 234 (333)
T ss_pred --ccCC----CCCCHHHHHHHHHHHHHhCCCCceEEEE-eCCCCchHHHHHHHHHHhCCCEEEeeccccc-ccccCccHH
Confidence 1332 23578888899988888775 3222221 1222 22233466888999987 22210 125667888
Q ss_pred HHHHHHHHcCCCc
Q 016605 348 ADQLMFKVLGLTP 360 (386)
Q Consensus 348 ~~~~~i~~~G~~p 360 (386)
..+.++++.|+.+
T Consensus 235 ~lv~~l~~~g~~t 247 (333)
T TIGR03217 235 VFVAVLDRLGWNT 247 (333)
T ss_pred HHHHHHHhcCCCC
Confidence 8888898888753
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-05 Score=71.06 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHcCC--cEE-EEecccCCCCCChhhHHHHHHHHHH-------------Hh--------hcCcEEEE
Q 016605 122 MTKDAVMQAAQKAKEAGS--TRF-CMGAAWRDTIGRKTNFNQILEYVKD-------------IR--------DMGMEVCC 177 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~--~~v-~l~~g~~~~~ge~~~~~~l~~~i~~-------------ik--------~~g~~i~~ 177 (386)
-+.++....+++++.+|. +.| +++.|++.........+++..-+.. ++ -.|+.+.+
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIET 229 (554)
T KOG2535|consen 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIET 229 (554)
T ss_pred CHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEeec
Confidence 355677777888888874 233 2233334433322333333332221 11 11444555
Q ss_pred ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CC-CHHHHHHHH
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE-AEEDRVGLL 254 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge-t~ed~~~~l 254 (386)
.+.......+..|-.+|+.++.+++++. +++-..-+++|+...+-+++..++++|+++.+++|.-+ +- -+.|+..+.
T Consensus 230 RPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~ 309 (554)
T KOG2535|consen 230 RPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFK 309 (554)
T ss_pred CcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHHH
Confidence 5666778889999999999999999999 88888888899999999999999999999999999877 32 345666666
Q ss_pred HHHhcCCCCCCeEeeeeeeecCCCCCC------CCCCCCHHHHHHHHHHHHHhCCC
Q 016605 255 HTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 255 ~~l~~l~~~~~~v~~~~f~P~~gT~l~------~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
++...=...++.+.+++-..+.||-+. .....++..+..++|..-.+.|.
T Consensus 310 E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPP 365 (554)
T KOG2535|consen 310 EYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPP 365 (554)
T ss_pred HHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCc
Confidence 666544334677788877777788653 23557888888888866666665
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.6e-05 Score=67.98 Aligned_cols=219 Identities=15% Similarity=0.204 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHH-HHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ-AIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~-l~~Lk~aG~~~v~i 200 (386)
++.++..+.++.+.+.|++.+-++. +. ..+..++.+.++.+......+...+.....+-+. ++.+++.|++.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~---~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF---PF-ASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH---CT-SSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc---cc-cCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 7899999999999999999987762 11 1244566666666655553333334433322233 56667899999988
Q ss_pred ccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 201 NLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 201 ~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
.+...+. ...+++.+ ...+...+.++.+++.|+.+..++.....-+++++.+.++.+.+++ ++.+.+ + +
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~l----~--D 158 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG--ADIIYL----A--D 158 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT---SEEEE----E--E
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC--CeEEEe----e--C
Confidence 7666542 23333321 1356667788889999999988887766778999999999999986 655533 2 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHHHH
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~~i 353 (386)
|- ...++.++.+++...+..+|+..+.+. ..-.++.-.....++.+||+.+ +.|- =..+++.+.++.+.++
T Consensus 159 t~----G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~Gl-G~~~Gn~~le~lv~~L 233 (237)
T PF00682_consen 159 TV----GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGL-GERAGNAPLEELVAAL 233 (237)
T ss_dssp TT----S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGG-SSTTSB-BHHHHHHHH
T ss_pred cc----CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccC-CCCCCCccHHHHHHHH
Confidence 21 234788899999999999997433332 1112222233467889999987 2221 0235667899999999
Q ss_pred HHcC
Q 016605 354 KVLG 357 (386)
Q Consensus 354 ~~~G 357 (386)
+..|
T Consensus 234 ~~~g 237 (237)
T PF00682_consen 234 ERMG 237 (237)
T ss_dssp HHT-
T ss_pred hhcC
Confidence 8877
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0011 Score=63.84 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccC-----CCCCCh--hhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~-----~~~ge~--~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.++.+++.+.++.+.+.|++.+-++.+.. ...|.+ ...+.+..+.+..++..+.....+|.-+.+.++...+.
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~ 100 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDA 100 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHc
Confidence 38999999999999999999887752210 001211 12232222222222222233345666678889999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
|++.+.+.... ...+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 101 gvd~iri~~~~-----------~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G--a~~i~i---- 163 (337)
T PRK08195 101 GVRVVRVATHC-----------TEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG--AQCVYV---- 163 (337)
T ss_pred CCCEEEEEEec-----------chHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC--CCEEEe----
Confidence 99998775311 1235678899999999999999888877778999999999999986 555422
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCcceeecCcccccC--hhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLSAGRVRFS--MPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~l-p~~~i~i~~g~~~~~--~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
.+|- ....++++.+++...+..+ |+..+.+- +..+++ -.....++.+||+.+ +.|=. ..+.+...+
T Consensus 164 --~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H-~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG-~~aGN~~tE 235 (337)
T PRK08195 164 --VDSA----GALLPEDVRDRVRALRAALKPDTQVGFH-GHNNLGLGVANSLAAVEAGATRIDGSLAGLG-AGAGNTPLE 235 (337)
T ss_pred --CCCC----CCCCHHHHHHHHHHHHHhcCCCCeEEEE-eCCCcchHHHHHHHHHHhCCCEEEecChhhc-ccccCccHH
Confidence 2332 2357888889998888877 44333221 122222 233466888999976 22200 135667888
Q ss_pred HHHHHHHHcCCC
Q 016605 348 ADQLMFKVLGLT 359 (386)
Q Consensus 348 ~~~~~i~~~G~~ 359 (386)
+.+.++++.|+.
T Consensus 236 ~lv~~L~~~g~~ 247 (337)
T PRK08195 236 VLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHhcCCC
Confidence 888888888874
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00068 Score=62.96 Aligned_cols=217 Identities=14% Similarity=0.175 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++..+.++.+.+.|++.+-++. |..+ +.. .+.++.+.+. +..+. .....+.+.++...++|++.+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~-~~~----~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~i 86 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI---PAMG-EEE----REAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTAV 86 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec---CCCC-HHH----HHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCEE
Confidence 48999999999999999999887642 2222 122 2344445432 33321 223246778889999999999
Q ss_pred ecccCch-HHHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTS-REFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~-~~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-.. ....++++.+. ..+...+.++.+++.|+.+..+++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l------ 158 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG--ADRLRF------ 158 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC--CCEEEe------
Confidence 9877655 33444554322 355666888999999999988888776678999999999999886 554322
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ....++++.+++...+..+| ..+.+. ....++.-.....++.+||+.+ +.|=. ..+++...++.+.
T Consensus 159 ~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G-~~aGN~~tE~lv~ 232 (259)
T cd07939 159 ADTV----GILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG-ERAGNAALEEVVM 232 (259)
T ss_pred CCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-ccccCcCHHHHHH
Confidence 2332 23567888888888887666 222221 1112222233466888999877 22211 2367789999999
Q ss_pred HHHHc-CCCc
Q 016605 352 MFKVL-GLTP 360 (386)
Q Consensus 352 ~i~~~-G~~p 360 (386)
+++.. |+.+
T Consensus 233 ~l~~~~g~~~ 242 (259)
T cd07939 233 ALKHLYGRDT 242 (259)
T ss_pred HHHHhcCCCC
Confidence 99997 8753
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0006 Score=66.86 Aligned_cols=218 Identities=14% Similarity=0.175 Sum_probs=141.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+-++ .|..+ +.-.+.++.+.+.+... .+..+....+.++...++|++.+.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~-----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAG---FPAVS-----EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEe---CCCcC-----hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEE
Confidence 4899999999999999999988664 22222 22244555555444332 122233457789999999999999
Q ss_pred cccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 200 HNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 200 i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+.+.+.+ ....+++.+. .++...+.++.+++.|+.+..++..+...+.+.+.+.++.+.+.| ++.+.+ +
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~I~l------~ 165 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG--ADRVRF------C 165 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC--CCEEEE------e
Confidence 9887773 4445554322 355566688899999999888877766678899999999999886 555332 2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~~ 352 (386)
+|- ...++.++.+++...+..+ +..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.++++..
T Consensus 166 DT~----G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG-eraGNa~lE~vv~~ 239 (378)
T PRK11858 166 DTV----GILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLG-ERAGNAALEEVVMA 239 (378)
T ss_pred ccC----CCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecccc-ccccCccHHHHHHH
Confidence 442 2356788888888777655 32222211 111222223456788999987 33311 23567888888888
Q ss_pred HH-HcCCCc
Q 016605 353 FK-VLGLTP 360 (386)
Q Consensus 353 i~-~~G~~p 360 (386)
++ ..|+..
T Consensus 240 L~~~~g~~~ 248 (378)
T PRK11858 240 LKYLYGIDL 248 (378)
T ss_pred HHHHhCCCC
Confidence 87 577654
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0008 Score=65.62 Aligned_cols=217 Identities=15% Similarity=0.186 Sum_probs=142.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE--EEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~--i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.+-++. +..+ +.-.+.++.+.+.+.. +. .......+.++...++|++.+
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~v~-~~~r~~~~di~~a~~~g~~~i 88 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF---PIAS-----EGEFEAIKKISQEGLNAEIC-SLARALKKDIDKAIDCGVDSI 88 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----hHHHHHHHHHHhcCCCcEEE-EEcccCHHHHHHHHHcCcCEE
Confidence 48999999999999999999887642 2222 2224566666544333 32 222346788999999999999
Q ss_pred ecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-+.+ ....+++.+. .++...++++.+++.|+.+..++.-....+.+.+.+.++.+.+.| ++.+.+
T Consensus 89 ~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l------ 160 (363)
T TIGR02090 89 HTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG--ADRINI------ 160 (363)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC--CCEEEE------
Confidence 88776663 3333444322 467777899999999999888776655667899999999998886 555433
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ...++.++.+++...+..++ ..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+.++++.
T Consensus 161 ~DT~----G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlG-eraGN~~lE~vv~ 234 (363)
T TIGR02090 161 ADTV----GVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG-ERAGNAALEEVVM 234 (363)
T ss_pred eCCC----CccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccc-cccccccHHHHHH
Confidence 2332 23467788888887776554 222221 1111222223466888999877 22311 2356678888888
Q ss_pred HHHH-cCCCc
Q 016605 352 MFKV-LGLTP 360 (386)
Q Consensus 352 ~i~~-~G~~p 360 (386)
+++. .|+.+
T Consensus 235 ~L~~~~g~~~ 244 (363)
T TIGR02090 235 ALKYLYGVKT 244 (363)
T ss_pred HHHHhhCCCC
Confidence 8887 78754
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.3e-05 Score=75.49 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=93.3
Q ss_pred ecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCH-HHHHHHHH
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLH 255 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~ 255 (386)
|.-.++++.++++.+.+++-+++|+.+. ++.+.++.+.....+.++.++++.++||.+.+.+++-.|-|+ +++.+++.
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 3344789999999999999999999999 999999988888999999999999999998888777555554 78999999
Q ss_pred HHhcCCC-CCCeEeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHH
Q 016605 256 TLATLPT-HPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATA 298 (386)
Q Consensus 256 ~l~~l~~-~~~~v~~~~f~P~~gT~l~~----~~~~s~~e~~~~~a~~ 298 (386)
.+.+++. ....+.-...+|..=|.+.. ..+.+.++..+++...
T Consensus 202 dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 202 DLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHHH
Confidence 9988821 12234444567777676532 3566777766666543
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0016 Score=60.43 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=138.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCc--EEEEecCCCCHHHHHHHHHhccCe
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~--~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
..++.++.++.++.+.+.|++.+-++. |... +...+.++.+.+.+. .+ ......+.+.++...++|++.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~-----~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS---PAAS-----PQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC-----HHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCE
Confidence 348999999999999999999887764 2222 333444444443222 23 222345678899999999999
Q ss_pred eecccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 198 YNHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 198 v~i~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+.+.+-+.+. ...+.+.+ ...+...+.++.+++.|+.+..++.-..+-+.+.+.++++.+.+++ ++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l----- 160 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG--VNRVGI----- 160 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 9887755532 22333322 2355567777999999999999888777777899999999999986 554322
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHH
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 350 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~ 350 (386)
++|- ...+++++.+++...+..++ ..+.+. ..-.++.-.....++.+||+.+ +.|= =..+++.+.++.+
T Consensus 161 -~Dt~----G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~Gl-GeraGn~~~e~~~ 233 (262)
T cd07948 161 -ADTV----GIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGI-GERNGITPLGGLI 233 (262)
T ss_pred -CCcC----CCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc-ccccCCccHHHHH
Confidence 2332 23567788888888887765 222221 1111222223466888999976 2221 0125667888888
Q ss_pred HHHHHcC
Q 016605 351 LMFKVLG 357 (386)
Q Consensus 351 ~~i~~~G 357 (386)
..++..+
T Consensus 234 ~~l~~~~ 240 (262)
T cd07948 234 ARMYTAD 240 (262)
T ss_pred HHHHhcc
Confidence 8887654
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0021 Score=60.55 Aligned_cols=224 Identities=12% Similarity=0.053 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+-+++-..+..- |.. .+-.+.++.+.+. +..+..-. .+.+-+++..++|++.+.
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~~-~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v~ 97 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWV-PQM-ADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEVA 97 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccc-ccc-ccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEEE
Confidence 489999999999999999998876532211101 111 1124555555432 33332211 257778888899999999
Q ss_pred cccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecC---C---CHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG---E---AEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glg---e---t~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.+.+.+. ...+++.+ ...+...++++.+++.|+.+..++.+.++ + +.+.+.+.++.+.+.| ++.+.+
T Consensus 98 i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l- 174 (287)
T PRK05692 98 VFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG--CYEISL- 174 (287)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC--CcEEEe-
Confidence 88766532 33333322 13445667889999999988766665332 2 6788899999998887 554432
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccC--C-ccc--cC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTG--E-KLL--TT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g--~-~~~--t~ 341 (386)
++|- ...++.++.+++...+..+|+..+.+. ..-.++.-.....++.+||+.+ +.| + .|- .+
T Consensus 175 -----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~a 245 (287)
T PRK05692 175 -----GDTI----GVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGAS 245 (287)
T ss_pred -----cccc----CccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcc
Confidence 2332 234678888888888877775333221 1112222233466889999987 222 2 111 25
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++...++++.+++..|+..
T Consensus 246 GN~~~E~lv~~L~~~g~~t 264 (287)
T PRK05692 246 GNVATEDVLYMLHGLGIET 264 (287)
T ss_pred ccccHHHHHHHHHhcCCCC
Confidence 6789999999999988753
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.002 Score=59.92 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccC-----CCCCChhhHHHHHHHHHHHhh--cCcE--EEEecCCCCHHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRKTNFNQILEYVKDIRD--MGME--VCCTLGMLEKHQAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~-----~~~ge~~~~~~l~~~i~~ik~--~g~~--i~~t~g~l~~e~l~~Lk 191 (386)
.++.++..+.++.+.+.|++.+-++.... ...+.+ .. .-.+.++.+++ .+.+ ....++....+.++...
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AH-TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CC-ChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 38999999999999999999887752100 000000 00 11223333322 1333 34445666678899999
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
++|++.+.+..-.. ..+...+.++.+++.|+.+..+++-...-+++.+.+.++.+.+.| ++.+.+
T Consensus 96 ~~g~~~iri~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l-- 160 (263)
T cd07943 96 DLGVDVVRVATHCT-----------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG--ADCVYV-- 160 (263)
T ss_pred HcCCCEEEEEechh-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 99999988754222 234567899999999999888876655668899999999999986 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
++|- ....++++.+++...|..++...+.+. ..-.++.-.....++.+||+.+ +.|=. ..+++.+.+
T Consensus 161 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG-~~aGN~~~E 231 (263)
T cd07943 161 ----TDSA----GAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLG-AGAGNTPLE 231 (263)
T ss_pred ----cCCC----CCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeeccccc-CCcCCccHH
Confidence 3442 235788888888888887765222211 1111222223466788999987 22210 125678999
Q ss_pred HHHHHHHHcCCCc
Q 016605 348 ADQLMFKVLGLTP 360 (386)
Q Consensus 348 ~~~~~i~~~G~~p 360 (386)
+...+++..|+.+
T Consensus 232 ~lv~~L~~~g~~~ 244 (263)
T cd07943 232 VLVAVLERMGIET 244 (263)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999888764
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-05 Score=65.10 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=56.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcC-CcEEEEecccCCCCCChh---hHHHHHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKT---NFNQILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G-~~~v~l~~g~~~~~ge~~---~~~~l~~~i~~ik~~ 171 (386)
..+||++|.||..+... .......++.+++.+.++.+.+.+ ...|.++|| ||+ .++.+.++++.+|+.
T Consensus 22 ~~gCnl~C~~C~n~~~~--~~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGG------EPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETW--NFNGGKEFTEALEKEIIRDLNDNPLIDGLTLSGG------DPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCccccc--CCCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeCh------hhCCCCCHHHHHHHHHHHHHh
Confidence 36899999999876432 111223488666666666666554 556777763 554 347899999999864
Q ss_pred -CcE-EEEecCCCCHHHHH
Q 016605 172 -GME-VCCTLGMLEKHQAI 188 (386)
Q Consensus 172 -g~~-i~~t~g~l~~e~l~ 188 (386)
+.. +..++|...++.++
T Consensus 94 ~~~~~~~~~tG~~~~~~~~ 112 (154)
T TIGR02491 94 FPEKDIWLWTGYTWEEILE 112 (154)
T ss_pred CCCCCEEEeeCccHHHHhc
Confidence 554 66788877666553
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0014 Score=63.98 Aligned_cols=217 Identities=14% Similarity=0.203 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.+-++. |..+ +.-.+.++.+.+.+ ..+ +.......+.++...++|++.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~i-~~~~r~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI---PAMG-----EEERAVIRAIVALGLPARL-MAWCRARDADIEAAARCGVDAV 89 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----HHHHHHHHHHHHcCCCcEE-EEEcCCCHHHHHHHHcCCcCEE
Confidence 48999999999999999999887642 2222 22234455554332 233 2233456888999999999999
Q ss_pred ecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-+.+ ....+++.+. ..+...++++.+++.|+.+..++..+...+.+.+.+.++.+.+.| ++.+. .
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------l 161 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG--ADRFR------F 161 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC--cCEEE------E
Confidence 98776653 3444554332 345556889999999999888777766667889999999998886 55432 3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ...++.++.+++...+..++ ..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+.++++.
T Consensus 162 ~DT~----G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiG-eraGN~~lE~lv~ 235 (365)
T TIGR02660 162 ADTV----GILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLG-ERAGNAALEEVAM 235 (365)
T ss_pred cccC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccc-cccccCCHHHHHH
Confidence 3442 23577888888877776553 222221 1111222223466889999987 33211 2356788888888
Q ss_pred HH-HHcCCCc
Q 016605 352 MF-KVLGLTP 360 (386)
Q Consensus 352 ~i-~~~G~~p 360 (386)
.+ ...|..+
T Consensus 236 ~L~~~~g~~~ 245 (365)
T TIGR02660 236 ALKRLLGRDT 245 (365)
T ss_pred HHHHhcCCCC
Confidence 88 6678754
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0021 Score=60.18 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=141.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.|+-++.++.+.+.|++.+-++....+... |. +.+.-+.++.+.. .+..+..-. ...+.+++..++|++.+.
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~-~~d~~~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~i~ 91 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWV-PQ-MADAEEVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDEVA 91 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cc-cCCHHHHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCEEE
Confidence 489999999999999999999877643222211 11 1111133444432 234432222 357778999999999988
Q ss_pred cccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecC------CCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.+-+.+ -...+++.. ...+...+.++.+++.|+.+..++.+-++ -+.+.+.+.++.+.++| ++.+.+
T Consensus 92 i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l- 168 (274)
T cd07938 92 VFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLG--CDEISL- 168 (274)
T ss_pred EEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE-
Confidence 8776663 333444433 24577778899999999998777665442 25677888888888886 544332
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccC---Ccc--ccC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTG---EKL--LTT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g---~~~--~t~ 341 (386)
++|- ...++.++.+++...+..+|+..+.+. ..-.++.......++.+||+.+ +.| -.+ ..+
T Consensus 169 -----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~era 239 (274)
T cd07938 169 -----GDTI----GVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGAT 239 (274)
T ss_pred -----CCCC----CccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCcc
Confidence 2332 235678888888888877776433322 1112222233467889999987 222 111 236
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++.+.++.+.+++..|+.+
T Consensus 240 GN~~~E~lv~~L~~~g~~t 258 (274)
T cd07938 240 GNVATEDLVYMLEGMGIET 258 (274)
T ss_pred CCcCHHHHHHHHHhcCCCC
Confidence 7789999999999888753
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-05 Score=64.73 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=57.2
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCC--cEEEEecccCCCCCChh---hHHHHHHHHHHHhh
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKT---NFNQILEYVKDIRD 170 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~--~~v~l~~g~~~~~ge~~---~~~~l~~~i~~ik~ 170 (386)
..+||++|.||........ .....++.+.+.+.++.+...+. ..|.++|| ||+ ..+.+.++++++++
T Consensus 23 ~~GCnl~C~~C~n~~~~~~--~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sGG------EPl~~~~~~~l~~l~~~~k~ 94 (154)
T PRK11121 23 VSGCVHQCPGCYNKSTWRL--NSGHPFTKEMEDQIIADLNDTRIKRQGLSLSGG------DPLHPQNVPDILKLVQRVKA 94 (154)
T ss_pred cCCCCCcCcCCCChhhccC--CCCcccCHHHHHHHHHHHHHhCCCCCcEEEECC------CccchhhHHHHHHHHHHHHH
Confidence 4799999999987642111 11122454444444444444433 46777664 453 45778888888875
Q ss_pred c--CcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 171 M--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 171 ~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
. +..+.+++|...++.... .+.-++.+.+-+|+
T Consensus 95 ~~~~~~i~~~tGy~~eel~~~-~~~~l~~~DvlvDG 129 (154)
T PRK11121 95 ECPGKDIWVWTGYKLDELNAA-QRQVVDLIDVLVDG 129 (154)
T ss_pred HCCCCCEEEecCCCHHHHHHH-HHHHHhhCCEEEec
Confidence 3 456788899875554322 22224444454555
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.003 Score=60.84 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.|+-++.++.+.+.|++.+-.+....+.. -| ...+-.+.++.+++ .+..+..-. .+.+.+++..++|++.+.
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~-vP-qmad~~ev~~~i~~~~~~~~~~l~--~n~~die~A~~~g~~~v~ 139 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFVSPKW-VP-QLADAKDVMAAVRNLEGARFPVLT--PNLKGFEAAIAAGAKEVA 139 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCccc-cc-ccccHHHHHHHHHhccCCceeEEc--CCHHHHHHHHHcCcCEEE
Confidence 48999999999999999999887653221110 01 11122233333432 123321111 378889999999999999
Q ss_pred cccCchHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEE--eec-C---CCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGI--IGL-G---EAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~~-~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i--~Gl-g---et~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.+-+.+. ...+++.+ ..++...+.++.+++.|+.+..++. +|. . -+.+.+.+.++.+.+.| ++.|.+
T Consensus 140 i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G--ad~I~l- 216 (347)
T PLN02746 140 VFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG--CYEISL- 216 (347)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC--CCEEEe-
Confidence 88855543 22233322 1344555688999999999876664 442 1 25677888888888886 555432
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccC--C-ccc--cC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTG--E-KLL--TT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g--~-~~~--t~ 341 (386)
++|- ....+.++.+++...+..+|...+.+- ..-.++.-.....++.+||+.+ +.| + .|- .+
T Consensus 217 -----~DT~----G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~gra 287 (347)
T PLN02746 217 -----GDTI----GVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGAS 287 (347)
T ss_pred -----cCCc----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCC
Confidence 2332 234677888888877777775323221 1112222233466889999987 222 2 111 35
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++...++++.+++..|+..
T Consensus 288 GN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 288 GNVATEDVVYMLNGLGVST 306 (347)
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 6788999999999998753
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0032 Score=58.69 Aligned_cols=209 Identities=14% Similarity=0.111 Sum_probs=138.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh--------hhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--------TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~--------~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk 191 (386)
.++.++..+.++.+.+.|++.+-++-.. .++. ...+.+..+.+..+ +..+......+..+.+.++...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRS---SPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCC---CCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHh
Confidence 3899999999999999999988665211 1110 01233333333332 2223334455556778888888
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
+.|++.+.+.+ +...+++..+.++.+++.|+.+..+++...+-+.+.+.+.++.+.+.| ++.+.+
T Consensus 93 ~~gv~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g--~~~i~l-- 157 (266)
T cd07944 93 GSVVDMIRVAF-----------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK--PDVFYI-- 157 (266)
T ss_pred cCCcCEEEEec-----------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC--CCEEEE--
Confidence 99999887754 234788899999999999999999988877888999999999999886 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-cceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCCh
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF 346 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~-~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~ 346 (386)
++|- ...+++++.+++...+..+++ ..+.+. ..-.++.-.....++.+||+.+ +.|=. ..+++.+.
T Consensus 158 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G-~~aGN~~~ 228 (266)
T cd07944 158 ----VDSF----GSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG-RGAGNLPT 228 (266)
T ss_pred ----ecCC----CCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCC-CCcCcHHH
Confidence 2332 235788888999888877764 333221 1112222233456788999876 22210 12566788
Q ss_pred hHHHHHHHHc
Q 016605 347 DADQLMFKVL 356 (386)
Q Consensus 347 ~~~~~~i~~~ 356 (386)
++.+.+++..
T Consensus 229 E~~v~~l~~~ 238 (266)
T cd07944 229 ELLLDYLNNK 238 (266)
T ss_pred HHHHHHHHHh
Confidence 8888888876
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0037 Score=58.40 Aligned_cols=215 Identities=15% Similarity=0.152 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhc----
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAG---- 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG---- 194 (386)
.++.++.++.++.+.+.|++.+-++.. ..+ |..+ +.++.+.+. +..+..-. ....+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~-~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFP---AAS-PGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC---CCC-HHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCC
Confidence 489999999999999999998877531 111 2223 445555432 33332111 12366677778888
Q ss_pred cCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 195 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 195 ~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
++.+.+.+-..+ ....+++.+ ..++...+.++.+++.|+.+..+.+.+..-+++.+.+.++.+.++| ++.+.+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l-- 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG--ATTINI-- 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 898887664442 333444432 2467777899999999999988888776678899999999999986 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--cceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK--AMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~--~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
++|- ...+++++.+++...|..+|+ ..+.+. ....++.-.....++.+||+.+ +.|=. ..+++..
T Consensus 163 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~~aGN~~ 233 (268)
T cd07940 163 ----PDTV----GYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAA 233 (268)
T ss_pred ----CCCC----CCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-ccccccc
Confidence 2332 235788888999988888875 322221 1111222223356788999877 22210 2356788
Q ss_pred hhHHHHHHHHcC
Q 016605 346 FDADQLMFKVLG 357 (386)
Q Consensus 346 ~~~~~~~i~~~G 357 (386)
.++++.+++..|
T Consensus 234 tE~lv~~L~~~~ 245 (268)
T cd07940 234 LEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHHHhcc
Confidence 999999999887
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=6e-05 Score=67.68 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=57.1
Q ss_pred CCCCCcCCCCCCCCCCCCC-CCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE
Q 016605 96 TGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 174 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~ 174 (386)
+.|||++|.||........ ....+..++.++|++.++... .+...|+++| |||...+.+.++++.+++.|+.
T Consensus 29 ~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTG------GEP~~~~~l~~Ll~~l~~~g~~ 101 (212)
T COG0602 29 FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTG------GEPLLQPNLLELLELLKRLGFR 101 (212)
T ss_pred cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeC------CcCCCcccHHHHHHHHHhCCce
Confidence 6799999999986422111 112455689999998877642 2344677776 5676667899999999988888
Q ss_pred EEE-ecCCCCHH
Q 016605 175 VCC-TLGMLEKH 185 (386)
Q Consensus 175 i~~-t~g~l~~e 185 (386)
+.+ |+|.+...
T Consensus 102 ~~lETngti~~~ 113 (212)
T COG0602 102 IALETNGTIPVW 113 (212)
T ss_pred EEecCCCCcccc
Confidence 654 56765444
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.01 Score=60.16 Aligned_cols=217 Identities=14% Similarity=0.152 Sum_probs=135.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.+-++. +..+ +..+ +.++.+.+.+ .+++. ......+.++...++|++.+
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~-~~d~----e~v~~i~~~~~~~~i~a-~~r~~~~di~~a~~~g~~~v 90 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGS---AITS-EGER----EAIKAVTDEGLNAEICS-FARAVKVDIDAALECDVDSV 90 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC---CcCC-HHHH----HHHHHHHhcCCCcEEEe-ecccCHHHHHHHHhCCcCEE
Confidence 48999999999999999999887643 2112 2233 3444454332 33322 11223667888999999999
Q ss_pred ecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 199 NHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 199 ~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
.+.+-+.+ ....+++.+. ..+...++++.+++.|+.+.....-+...+.+-+.+.++.+.+.| ++.+. .
T Consensus 91 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------l 162 (488)
T PRK09389 91 HLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG--ADRIC------F 162 (488)
T ss_pred EEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC--CCEEE------E
Confidence 98887763 3333444322 456667788889999998887777655566788889999998886 55532 2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~~ 351 (386)
++|- ...++.++.+++...+...+ ..+.+. ..-.++.-.....++.+||+.+ +.|-. ..+++.+.+++..
T Consensus 163 ~DTv----G~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiG-ERaGNa~lE~lv~ 236 (488)
T PRK09389 163 CDTV----GILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIG-ERAGNASLEEVVM 236 (488)
T ss_pred ecCC----CCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEccccc-ccccCccHHHHHH
Confidence 3442 23467777777776665443 222221 1111222223466889999987 33321 2356778888888
Q ss_pred HHHH-cCCCc
Q 016605 352 MFKV-LGLTP 360 (386)
Q Consensus 352 ~i~~-~G~~p 360 (386)
.++. .|..+
T Consensus 237 ~L~~~~g~~~ 246 (488)
T PRK09389 237 ALKHLYDVET 246 (488)
T ss_pred HHHhhcCCCC
Confidence 8876 36544
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.028 Score=52.56 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC---cEEE--E---ecCC--CCHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG---MEVC--C---TLGM--LEKHQAIEL 190 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g---~~i~--~---t~g~--l~~e~l~~L 190 (386)
.++.++..+.++.+.+.|++.+-++.+. . .|..++. ++.+.+.. ..+. . ..+. .++..++.+
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a 87 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPG---S-NPKDTEF----FARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQAL 87 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCc---C-CHHHHHH----HHHHHHcCCCCcEEEEEecccccCCCccchHHHHHH
Confidence 4899999999999999999998774321 1 1333333 34443322 2221 1 1222 234568888
Q ss_pred HHhccCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEE---eecCCCHHHHHHHHHHHhcCCCCC
Q 016605 191 KKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 191 k~aG~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~ 264 (386)
.++|++.+.+.+-+.+ ...+.++.+ ..++...+.++.+++.|+.+..+.+ -+...+.+.+.+.++.+.+.| +
T Consensus 88 ~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g--~ 165 (273)
T cd07941 88 LEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--A 165 (273)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC--C
Confidence 9999999888766553 233444432 3577778889999999998877544 233346777788888888886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+. .++|- ...+++++.+++...+..+|+..+.+. ..-.++.-.....++.+||+.+ +.|- =..
T Consensus 166 ~~i~------l~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~Gl-Ger 234 (273)
T cd07941 166 DWLV------LCDTN----GGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGY-GER 234 (273)
T ss_pred CEEE------EecCC----CCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccc-ccc
Confidence 5432 22332 235778888888888888886433321 1112222233466888999987 2221 023
Q ss_pred CCCCChhHHHHHHH-HcCCC
Q 016605 341 TPNNDFDADQLMFK-VLGLT 359 (386)
Q Consensus 341 ~~~~~~~~~~~~i~-~~G~~ 359 (386)
+++.+.+++...++ ..|+.
T Consensus 235 aGn~~~e~~~~~L~~~~~~~ 254 (273)
T cd07941 235 CGNANLCSIIPNLQLKMGYE 254 (273)
T ss_pred cccccHHHHHHHHHhccCCC
Confidence 56678888888887 56763
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.015 Score=54.52 Aligned_cols=213 Identities=13% Similarity=0.099 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cC------CCCHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LG------MLEKH 185 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g------~l~~e 185 (386)
.++.++.++.++.+.+.|+..+-++++.... .++ ..++.+..+.+...+..+..... .| ...++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 3899999999999999999888776432100 121 22333333333222222222111 11 13577
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCC
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 263 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 263 (386)
.++...++|++.|.+.. +..+.+...+.++.+++.|+.+...+.+ +..-+++.+.+.++.+.+.|
T Consensus 96 di~~~~~~g~~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-- 162 (275)
T cd07937 96 FVEKAAKNGIDIFRIFD-----------ALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-- 162 (275)
T ss_pred HHHHHHHcCCCEEEEee-----------cCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC--
Confidence 88888899999988754 2234788889999999999987765543 33567889999999999986
Q ss_pred CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 264 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 264 ~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
++.+.+ .+|- ...+++++.+++...|..++ ..+.+- ..-.++.......++.+||+.+ +.|- =.
T Consensus 163 a~~i~l------~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~Gl-G~ 230 (275)
T cd07937 163 ADSICI------KDMA----GLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPL-SG 230 (275)
T ss_pred CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccc-cC
Confidence 555433 2332 23567888888888887766 222221 1112222233466788999987 2221 01
Q ss_pred cCCCCChhHHHHHHHHcCCC
Q 016605 340 TTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~ 359 (386)
.+++.+.++.+.+++..|+.
T Consensus 231 ~aGN~~~E~l~~~L~~~g~~ 250 (275)
T cd07937 231 GTSQPSTESMVAALRGTGRD 250 (275)
T ss_pred CcCChhHHHHHHHHHccCCC
Confidence 25678899999999988865
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.034 Score=52.19 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHH-HHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcEEEEecCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~~~-~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.++.++-++.++.+ .+.|++.+-++. +... |..++.+.++.+..... ++.+..-. .....++..+++|+
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s-~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g~ 88 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVAS---ARVS-EGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAGA 88 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecC---CCCC-HHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCCC
Confidence 48999999999996 567999887653 2111 33344444444432211 23332211 23556888889999
Q ss_pred CeeecccCch-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEEe-e--cCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 196 TAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGII-G--LGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 196 ~~v~i~le~~-~~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i~-G--lget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.+.+.+-+. .....+++++ ...+...+.++.+++.|+.+..++.- | ..-+.+.+.+.++.+.++| ++.+.+
T Consensus 89 ~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G--~~~i~l 166 (280)
T cd07945 89 KVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP--IKRIML 166 (280)
T ss_pred CEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 9999888666 3444455443 24667778889999999988777663 2 1346888899999998886 554332
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
++|- ...++.++.+++...+..+|+..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+
T Consensus 167 ------~DT~----G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG-e~aGN~~ 235 (280)
T cd07945 167 ------PDTL----GILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG-ERAGNAP 235 (280)
T ss_pred ------cCCC----CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccCcc
Confidence 2332 2346778888888777777764333221 111222233466889999977 22211 2356788
Q ss_pred hhHHHHHHH-HcCCCc
Q 016605 346 FDADQLMFK-VLGLTP 360 (386)
Q Consensus 346 ~~~~~~~i~-~~G~~p 360 (386)
.++++.+++ ..|+..
T Consensus 236 ~E~~v~~L~~~~g~~t 251 (280)
T cd07945 236 LASVIAVLKDKLKVKT 251 (280)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 999999995 478753
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.014 Score=58.75 Aligned_cols=214 Identities=12% Similarity=0.099 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e~ 186 (386)
++.++.+..++.+.+.|+..+-+.||.+.. .++ ..++.+..+-+.+++..+..... .|. +.+..
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E-dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~f 102 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE-DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRF 102 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHH
Confidence 899999999999999999999887664333 222 23444444444444333443332 222 23556
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
++...++|++.+.+..- -.+.+....+++.++++|..+...+.| +.-.|.+.+.+.++.+.+.| +
T Consensus 103 v~~a~~~Gidi~RIfd~-----------lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G--a 169 (499)
T PRK12330 103 VEKSAENGMDVFRVFDA-----------LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG--A 169 (499)
T ss_pred HHHHHHcCCCEEEEEec-----------CChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC--C
Confidence 77777889998776431 233466677889999999877555544 55678999999999999987 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-Ccceeec-CcccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
+.+.+ ++|- ...++.+..+++...+..+| +..+.+. ..-.++.-.....++.+||+.+ +.|=..
T Consensus 170 d~I~I------kDta----Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~- 238 (499)
T PRK12330 170 DSICI------KDMA----ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSL- 238 (499)
T ss_pred CEEEe------CCCc----cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccc-
Confidence 55433 2332 23577888888888888775 4434332 1112222233466889999987 223111
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 016605 340 TTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~p 360 (386)
.+...+.++++.+++..|+..
T Consensus 239 ~aGn~atE~vv~~L~~~g~~t 259 (499)
T PRK12330 239 GPGHNPTESLVEMLEGTGYTT 259 (499)
T ss_pred cccchhHHHHHHHHHhcCCCC
Confidence 235578899999999888653
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.012 Score=60.14 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--ecCC-CCHHHHHHHHHhccCe
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLGM-LEKHQAIELKKAGLTA 197 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t~g~-l~~e~l~~Lk~aG~~~ 197 (386)
.++.++.++.++.+.+.|++.+-++. |..+ +..++.+..+.+..+ +..++. .... ..+..++.++++|.++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~s-~~d~~~v~~i~~~~~--~~~i~a~~r~~~~did~a~~a~~~~~~~~ 95 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGF---PASS-PGDFEAVKRIARTVK--NSTVCGLARAVKKDIDAAAEALKPAEAPR 95 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC---CCCC-hHHHHHHHHHHhhCC--CCEEEEEccCCHHHHHHHHHHhhcCCCCE
Confidence 48999999999999999999887643 2112 334444433322221 233322 1111 1223344445788888
Q ss_pred eecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 198 YNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 198 v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+.+.+-+.+ ....+++.+. ..+...++++.+++.|+.+..+...+..-+.+.+.+.++.+.+.| ++.+.
T Consensus 96 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~G--a~~i~------ 167 (513)
T PRK00915 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAG--ATTIN------ 167 (513)
T ss_pred EEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcC--CCEEE------
Confidence 998877763 3444444322 345556888999999999887777666567788899999998886 54432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
.++|- ...++.++.+++...+..+|+ ..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.+
T Consensus 168 l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlG-ERaGNa~lE 242 (513)
T PRK00915 168 IPDTV----GYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAALE 242 (513)
T ss_pred EccCC----CCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeeccc-ccccCccHH
Confidence 23443 234678888888888877764 2232211 111122223466888999987 33311 235667788
Q ss_pred HHHHHHHHc
Q 016605 348 ADQLMFKVL 356 (386)
Q Consensus 348 ~~~~~i~~~ 356 (386)
+++..++..
T Consensus 243 ~vv~~L~~~ 251 (513)
T PRK00915 243 EVVMALKTR 251 (513)
T ss_pred HHHHHHHhh
Confidence 877777654
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.013 Score=52.93 Aligned_cols=198 Identities=9% Similarity=-0.014 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.-.+.++++.+.+.|++.+++ +..+..- .+-..-.++.+.++ +...++++.-.- -.++.++.+.++|++.+.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FV-PNitfGp~~i~~i~--~~~~~DvHLMv~-~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFS-PFFTVGAIAIKQFP--THCFKDVHLMVR-DQFEVAKACVAAGADIVTL 97 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcC-CccccCHHHHHHhC--CCCCEEEEeccC-CHHHHHHHHHHhCCCEEEE
Confidence 34567788888888899998876 3322211 00001133344333 122333322111 2577899999999999999
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
..|+.. ...++++.+++.|+.+.+++.+..+...+.+...+.. ++.+-+....| |..
T Consensus 98 H~Ea~~-------------~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P--Gfg- 154 (228)
T PRK08091 98 QVEQTH-------------DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP--RTG- 154 (228)
T ss_pred cccCcc-------------cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC--CCC-
Confidence 888631 2346778889999978888888777777777665543 35666666655 432
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
.+.. ....+..+..+|.+.++ ..|.+.+| +..+.-.....+|||.++.|.. +-. ..+.++.++.++
T Consensus 155 -GQ~f--~~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGaD~~V~GSa-lF~-~~d~~~~i~~l~ 224 (228)
T PRK08091 155 -TKAP--SDLILDRVIQVENRLGNRRVEKLISIDGS---MTLELASYLKQHQIDWVVSGSA-LFS-QGELKTTLKEWK 224 (228)
T ss_pred -Cccc--cHHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChh-hhC-CCCHHHHHHHHH
Confidence 2221 12233444444444433 22445443 3344445677899999988863 322 234555555544
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.027 Score=56.46 Aligned_cols=215 Identities=12% Similarity=0.064 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEE--EEe--c--CC------CCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEV--CCT--L--GM------LEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i--~~t--~--g~------l~~e~ 186 (386)
.++.++.+..+..+.+.|+..+-+.||.+....-....+.-.+.++.+++. +..+ ... | |. +-+..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 389999999999999999999988654321100000011223444444432 2232 111 1 22 12344
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
++...++|++.+.+..-.. +.+...++++.+++.|..+...+-+ +...+.+.+.+.++.+.+.| +
T Consensus 101 v~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G--a 167 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALN-----------DIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG--V 167 (467)
T ss_pred HHHHHHCCcCEEEEEEeCC-----------HHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 6777888999888754222 2455678889999999987755544 33457888899999998886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+.+. ..-.++.......++.+||+.+ +.+=.- .
T Consensus 168 d~I~i------~Dt~----G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~-g 235 (467)
T PRK14041 168 DSICI------KDMA----GLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSM-G 235 (467)
T ss_pred CEEEE------CCcc----CCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCC-C
Confidence 54433 2332 23567888888888887665 233332 1112222233466889999987 222111 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 236 agN~atE~lv~~L~~~g~~t 255 (467)
T PRK14041 236 TSQPPFESMYYAFRENGKET 255 (467)
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 34788999999999887653
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.042 Score=54.95 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~----ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e~ 186 (386)
.++.++.++.++.+.+.|+..+-+.||.+... ..+..++.+..+-+.++...+..... .|. +.++.
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 38999999999999999999998865532211 11123333333222222222221121 232 34677
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+++..++|++.+.+..-..+ .....++++.+++.|+.+...+.+ +.-.+.+-+.+.++.+.+.| +
T Consensus 102 v~~A~~~Gvd~irif~~lnd-----------~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G--a 168 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALND-----------VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG--A 168 (448)
T ss_pred HHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--C
Confidence 78888999998887543221 124567889999999886655444 33457788888998898886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+.+. ..-.++.......++.+||+.+ +.+=. ..
T Consensus 169 d~I~i------~Dt~----G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg-~g 236 (448)
T PRK12331 169 DSICI------KDMA----GILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFA-GG 236 (448)
T ss_pred CEEEE------cCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccC-CC
Confidence 55433 2332 23567788888888877665 233332 1112233333466889999987 22210 12
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 237 aGN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 237 TSQPATESMVAALQDLGYDT 256 (448)
T ss_pred cCCHhHHHHHHHHHhcCCCC
Confidence 66788999999999888753
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.067 Score=53.49 Aligned_cols=213 Identities=10% Similarity=0.078 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e~ 186 (386)
++.++++..+..+.+.|+..+-+.||.+.. ..+ ..++++..+-+.+++..+..... .|. +.+..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e-dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNE-DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 889999999999999999988887664332 222 23455555444454444443222 122 22344
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (386)
++..++.|++.+-+. +. -...+....+++.+++.|..+...+.+-. ..|.+-+.+.++.+.+.| +
T Consensus 111 v~~a~~~Gidi~Rif--------d~---lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G--a 177 (468)
T PRK12581 111 ISLSAQNGIDVFRIF--------DA---LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG--A 177 (468)
T ss_pred HHHHHHCCCCEEEEc--------cc---CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC--C
Confidence 777778899887662 11 23677778899999999998665555422 457777888888888886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...+.. ++..+.+. ....++.......++.+||+.+ +.+=.. .
T Consensus 178 d~I~I------kDta----G~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~-g 245 (468)
T PRK12581 178 DSICI------KDMA----GILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSE-G 245 (468)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCC-C
Confidence 55433 2332 235677778888777763 33333332 1112222333466889999987 221101 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 246 agN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 246 TSQPATESMYLALKEAGYDI 265 (468)
T ss_pred cCChhHHHHHHHHHhcCCCC
Confidence 45788899999999888753
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.089 Score=54.50 Aligned_cols=213 Identities=13% Similarity=0.107 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 185 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~e 185 (386)
.++.++.+..+..+.+.|+..+-+.||.+.. .++ ..++.+..+.+.+.+..+..... .|. ..++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 3899999999999999999999886653322 232 23344444333333333333332 122 2244
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCC
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 263 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 263 (386)
.++...++|++.+.+.. .+ .+.+....+++.+++.|..+...+-| ....|.+.+.+.++.+.+.|
T Consensus 102 ~v~~a~~~Gid~~rifd-~l----------nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-- 168 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-AM----------NDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-- 168 (593)
T ss_pred HHHHHHhcCCCEEEEee-eC----------CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC--
Confidence 57778888999988752 22 23467778999999999976544433 44567888999999998886
Q ss_pred CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 264 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 264 ~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
++.+.+ .+|- ....+.+..+++...|..++ ..+.+. ..-.++.-.....++.+||+.+ +.|=. .
T Consensus 169 ad~i~i------~Dt~----G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG-~ 236 (593)
T PRK14040 169 VDSLCI------KDMA----GLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMS-M 236 (593)
T ss_pred CCEEEE------CCCC----CCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHHcCCCEEEecccccc-c
Confidence 554433 2332 23567888888887776553 223322 1112222233466889999987 22210 1
Q ss_pred cCCCCChhHHHHHHHHcCCC
Q 016605 340 TTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~ 359 (386)
.+.+.+.++++..++..|+.
T Consensus 237 ~~Gn~~le~vv~~L~~~~~~ 256 (593)
T PRK14040 237 TYGHSATETLVATLEGTERD 256 (593)
T ss_pred cccchhHHHHHHHHHhcCCC
Confidence 25668889999999887765
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.089 Score=54.43 Aligned_cols=215 Identities=10% Similarity=0.051 Sum_probs=133.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcE--EEEe--c--CC------CCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--GM------LEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~--i~~t--~--g~------l~~e~ 186 (386)
.++.++.++.+..+.+.|+..+-+.||.+....-+...+.-.+.++.+++. +.. .+.. | |. +.++.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 389999999999999999999988655332210011112234444444431 223 2221 1 22 24566
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (386)
+++..++|++.+.+..-. .+.+....+++.+++.|+.+...+.+.. -.+.+.+.+.++.+.+.| +
T Consensus 97 v~~a~~~Gvd~irif~~l-----------nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G--a 163 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDAL-----------NDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG--V 163 (582)
T ss_pred HHHHHHCCCCEEEEEEec-----------CcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 788889999988774322 1235677889999999998776654433 357889999999999886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+.+. ..-.++.-.....++.+||+.+ +.|=. ..
T Consensus 164 d~I~i------~Dt~----G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG-~~ 231 (582)
T TIGR01108 164 DSICI------KDMA----GILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMS-GG 231 (582)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEecccccc-cc
Confidence 54322 3332 23567788888888887665 223322 1111222233466889999987 22210 13
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+.+.++++.+++..|+..
T Consensus 232 tGn~~le~vv~~L~~~g~~t 251 (582)
T TIGR01108 232 TSHPPTETMVAALRGTGYDT 251 (582)
T ss_pred ccChhHHHHHHHHHhcCCCc
Confidence 56788999999999887653
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.044 Score=50.27 Aligned_cols=205 Identities=14% Similarity=0.101 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCC----CCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRD----TIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~----~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.-.+.++++.+.+.|++.+++ +..+.. +.| ..+++.++. ...++++.-.- -.+..++.+.++|++
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfG-----p~~i~~i~~--~~p~DvHLMV~-~P~~~i~~~~~aGad 100 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVG-----PWAVGQLPQ--TFIKDVHLMVA-DQWTAAQACVKAGAH 100 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccC-----HHHHHHhcc--CCCeeEEeeeC-CHHHHHHHHHHhCCC
Confidence 45567788888888889998876 332221 112 233333332 22233322111 257789999999999
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-------eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-------VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-------v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
.|.+..|+.. ...++++.+++.|++ +.+++.+..+...+.+...+.. ++.|-+
T Consensus 101 ~It~H~Ea~~-------------~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-------vD~VLv 160 (254)
T PRK14057 101 CITLQAEGDI-------------HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-------VEVIQL 160 (254)
T ss_pred EEEEeecccc-------------CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-------CCEEEE
Confidence 9999888631 124667788888874 5567777666666666655542 456666
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCC--C
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP--N 343 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~--~ 343 (386)
....| |.. .+.. ....++.+..+|.+.++ ..|.+.+| +..+.-.....+|||.++.|..+-... .
T Consensus 161 MtV~P--Gfg--GQ~F--i~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGad~~V~GSalF~~~d~~ 231 (254)
T PRK14057 161 LAVNP--GYG--SKMR--SSDLHERVAQLLCLLGDKREGKIIVIDGS---LTQDQLPSLIAQGIDRVVSGSALFRDDRLV 231 (254)
T ss_pred EEECC--CCC--chhc--cHHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChHhhCCCCHH
Confidence 66655 432 2111 12223334444444432 23445443 344444567789999998886332211 1
Q ss_pred CChhHHHHHHHHcCCCcCCC
Q 016605 344 NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 344 ~~~~~~~~~i~~~G~~p~~~ 363 (386)
...+....++..+|=+...+
T Consensus 232 ~~i~~l~~~~~~~~~~~~~~ 251 (254)
T PRK14057 232 ENTRSWRAMFKVAGDTTFLP 251 (254)
T ss_pred HHHHHHHHHHhhcCCcccCC
Confidence 23444455666666544433
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.1 Score=54.19 Aligned_cols=214 Identities=12% Similarity=0.064 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcEEEEe----cC------CCCHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCT----LG------MLEKHQ 186 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~t----~g------~l~~e~ 186 (386)
.++.++.+..+..+.+.|+..+-+.||......-....++-++.++.+++. .+..... .| .+.++.
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 388999999999999999999888655321110001113344555555432 2222222 12 234667
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+++..++|++.+.+..-. .+.+...++++.+++.|..+..++.+ +.-.+.+.+.+.++.+.+.| +
T Consensus 102 v~~A~~~Gvd~irif~~l-----------nd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G--a 168 (592)
T PRK09282 102 VEKAAENGIDIFRIFDAL-----------NDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG--C 168 (592)
T ss_pred HHHHHHCCCCEEEEEEec-----------ChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 888889999988774322 22356678889999999987766655 32457889999999998886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+ .+|- ....+.+..+++...|..++ ..+.+. ..-.++.-.....++.+||+.+ +.+=.- .
T Consensus 169 d~I~i------~Dt~----G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~-~ 236 (592)
T PRK09282 169 DSICI------KDMA----GLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAF-G 236 (592)
T ss_pred CEEEE------CCcC----CCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCC-C
Confidence 54432 2332 23567788888888887665 223332 1112222233466889999987 222111 2
Q ss_pred CCCCChhHHHHHHHHcCCC
Q 016605 341 TPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~ 359 (386)
+.+.+.+.++.+++..|+.
T Consensus 237 agn~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 237 TSQPPTESMVAALKGTPYD 255 (592)
T ss_pred cCCHhHHHHHHHHHhCCCC
Confidence 3578889999999888765
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.12 Score=46.70 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhH-HHHHHHHHHH-hhcCcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNF-NQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~-~~l~~~i~~i-k~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.+.-.+.++++.+.+.|++.+++ +..++.- . ...+ ..+++.++.. ....++++.-.- -.+..++.+.++|++.+
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FV-P-N~tfg~~~i~~lr~~~~~~~~dvHLMv~-~P~~~i~~~~~~gad~I 89 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYV-P-NLTIGPMVCQALRKHGITAPIDVHLMVE-PVDRIVPDFADAGATTI 89 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccC-C-CcccCHHHHHHHHhhCCCCCEEEEeccC-CHHHHHHHHHHhCCCEE
Confidence 34557778888888889988876 3322221 0 0111 3344444433 222333322211 25778999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..|+. . ...++++.++++|++. ++.+..+...+.+...+. . ++.|-+....| |.
T Consensus 90 ~~H~Ea~----------~---~~~~~l~~Ir~~g~k~--GlalnP~T~~~~i~~~l~---~----vD~VlvMtV~P--Gf 145 (223)
T PRK08745 90 SFHPEAS----------R---HVHRTIQLIKSHGCQA--GLVLNPATPVDILDWVLP---E----LDLVLVMSVNP--GF 145 (223)
T ss_pred EEcccCc----------c---cHHHHHHHHHHCCCce--eEEeCCCCCHHHHHHHHh---h----cCEEEEEEECC--CC
Confidence 9988863 1 1336778888999754 444444555555555543 2 45666666655 44
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp----~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
.-+...+.. ++.++.+|.+.+ +..|.+.+| +..+.-.....+|||.++.|.. +.. ..++.+.++.++
T Consensus 146 ~GQ~fi~~~----l~KI~~l~~~~~~~~~~~~IeVDGG---I~~eti~~l~~aGaDi~V~GSa-iF~-~~d~~~~~~~lr 216 (223)
T PRK08745 146 GGQAFIPSA----LDKLRAIRKKIDALGKPIRLEIDGG---VKADNIGAIAAAGADTFVAGSA-IFN-APDYAQVIAQMR 216 (223)
T ss_pred CCccccHHH----HHHHHHHHHHHHhcCCCeeEEEECC---CCHHHHHHHHHcCCCEEEEChh-hhC-CCCHHHHHHHHH
Confidence 322222222 333344444432 223455543 3344445677899999988873 332 335777777776
Q ss_pred Hc
Q 016605 355 VL 356 (386)
Q Consensus 355 ~~ 356 (386)
+.
T Consensus 217 ~~ 218 (223)
T PRK08745 217 AA 218 (223)
T ss_pred HH
Confidence 54
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.13 Score=46.75 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhH-HHHHHHHHHHhhcCcEE--EEecCCCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNF-NQILEYVKDIRDMGMEV--CCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~-~~l~~~i~~ik~~g~~i--~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
+.-.+.++++.+.. |++.+++ +..++.- ....+ ..+++.++......+++ .+.+ .+..++.+.++|++.+
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FV--PN~tfg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~i 86 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFV--PNLTLSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFI 86 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccC--CCcccCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 44566677777766 8888876 2222211 00111 23444444332223333 3332 5778999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..|+.. ....+.++.++++|++. ++.+..+...+.+...+.. ++.|-+....| |.
T Consensus 87 t~H~Ea~~------------~~~~~~i~~Ik~~G~ka--GlalnP~T~~~~l~~~l~~-------vD~VLvMsV~P--Gf 143 (229)
T PRK09722 87 TLHPETIN------------GQAFRLIDEIRRAGMKV--GLVLNPETPVESIKYYIHL-------LDKITVMTVDP--GF 143 (229)
T ss_pred EECccCCc------------chHHHHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHh-------cCEEEEEEEcC--CC
Confidence 99888641 12236778889999865 4444445555555555442 35666666655 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
.-+.. ..+.++.+..+|.+.++ ..|.+.+| +..+.-.....+|||.++.|...+-....+..+.+..++
T Consensus 144 ~GQ~f----i~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~ 216 (229)
T PRK09722 144 AGQPF----IPEMLDKIAELKALRERNGLEYLIEVDGS---CNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMT 216 (229)
T ss_pred cchhc----cHHHHHHHHHHHHHHHhcCCCeEEEEECC---CCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence 32111 22334445555554433 23445543 334444567789999998885323322234556555555
Q ss_pred H
Q 016605 355 V 355 (386)
Q Consensus 355 ~ 355 (386)
+
T Consensus 217 ~ 217 (229)
T PRK09722 217 A 217 (229)
T ss_pred H
Confidence 4
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.17 Score=51.90 Aligned_cols=216 Identities=15% Similarity=0.119 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc---CcEEEE-----ecCC--CCHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLGM--LEKHQAIEL 190 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~---g~~i~~-----t~g~--l~~e~l~~L 190 (386)
.++.++.++.++.+.+.|++.+-++.. ... +..+ +.++.+.+. +..++. ..+. .++..++.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p---~as-~~d~----~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~ 94 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWP---GSN-PKDT----EFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQAL 94 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCC---cCC-hhHH----HHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHH
Confidence 489999999999999999998876431 111 2233 334444321 233221 1122 245678899
Q ss_pred HHhccCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeEeEE---eecCCCHHHHHHHHHHHhcCCCCC
Q 016605 191 KKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 191 k~aG~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+++|++.+.+.+-+.+ ....+++.+ ...+...++++.+++.|+.+..+.. -+.-.+.+-+.+.++.+.+.| +
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G--a 172 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--A 172 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCC--C
Confidence 9999999998877663 333444432 2466667888899999998776544 233345677788888888886 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+. .++|- ....+.++.+++...+..+ +..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..
T Consensus 173 d~i~------l~DTv----G~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlG-ER 240 (524)
T PRK12344 173 DWVV------LCDTN----GGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYG-ER 240 (524)
T ss_pred CeEE------EccCC----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 5543 33553 3356778888887766555 32232211 111222223466888999987 33311 13
Q ss_pred CCCCChhHHHHHHH-HcCC
Q 016605 341 TPNNDFDADQLMFK-VLGL 358 (386)
Q Consensus 341 ~~~~~~~~~~~~i~-~~G~ 358 (386)
+++.+.++++..++ +.|+
T Consensus 241 aGNa~lE~lv~~L~~~~g~ 259 (524)
T PRK12344 241 CGNANLCSIIPNLQLKMGY 259 (524)
T ss_pred ccCcCHHHHHHHHHhccCC
Confidence 56678888775555 4675
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.17 Score=52.38 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC-----CChhhHHHHHHHHHHHhhcCcEEEE----ecCC--CC----HHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----GRKTNFNQILEYVKDIRDMGMEVCC----TLGM--LE----KHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-----ge~~~~~~l~~~i~~ik~~g~~i~~----t~g~--l~----~e~ 186 (386)
++.++++..+..+.+.|+..+-+.||.+... .+ ..++++..+-+.+++..+...+ -.|. .. +..
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~e-dpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKE-DPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCC-CHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 7899999999999999999888877643311 11 2233333333333333444433 1233 22 346
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 264 (386)
++..++.|+|.+-+. |+ -.+.+....+++.++++|..+...+.| ..-.|.+.+.+.++.+.+.| +
T Consensus 102 v~~a~~~Gidv~Rif-d~----------lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G--a 168 (596)
T PRK14042 102 VKLAVNNGVDVFRVF-DA----------LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG--C 168 (596)
T ss_pred HHHHHHcCCCEEEEc-cc----------CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC--C
Confidence 667778899887662 11 234566678899999999987666544 33679999999999999987 5
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCccccc---cCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIF---TGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~~---~g~~~~t 340 (386)
+.+.+ ++|- ...++.+..+++...|..++ ..+++. ....++.......++.+||+.+- .|=. ..
T Consensus 169 d~I~I------kDta----G~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glG-g~ 236 (596)
T PRK14042 169 DSIAI------KDMA----GLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFS-GG 236 (596)
T ss_pred CEEEe------CCcc----cCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEecccccc-CC
Confidence 55433 2321 23567778888887776654 223322 11122222334568899999872 2210 12
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+.+++.++++.+++..|+..
T Consensus 237 tGn~~tE~lv~~L~~~g~~t 256 (596)
T PRK14042 237 ASHPPTEALVAALTDTPYDT 256 (596)
T ss_pred CCcHhHHHHHHHHHhcCCCC
Confidence 46678889999999888653
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.23 Score=50.89 Aligned_cols=220 Identities=12% Similarity=0.058 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--e---cCC--CCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--T---LGM--LEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t---~g~--l~~e~l~~Lk~a 193 (386)
.++.++-++.++.+.+.|++.+-.+. |.. .|..++.+..+.+.-. .+.+++. . .+. ..+..++.++++
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~---p~~-s~~d~~~v~~i~~~~~-~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~ 93 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGW---PGA-NPKDVQFFWQLKEMNF-KNAKIVAFCSTRRPHKKVEEDKMLQALIKA 93 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCC-ChHHHHHHHHHHHhCC-CCcEEEEEeeecCCCCCCchHHHHHHHhcC
Confidence 48999999999999999999886632 211 2444444443332110 1233322 1 121 235678999999
Q ss_pred ccCeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEE---eecCCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 194 GLTAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 194 G~~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~~~~v 267 (386)
|.+.+.+.+-+.+ ....+++... ..+...++++.+++.|..+..... -+.--+.+.+.+.++.+.+.| ++.+
T Consensus 94 ~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aG--ad~i 171 (526)
T TIGR00977 94 ETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAG--ADWL 171 (526)
T ss_pred CCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCC--CCeE
Confidence 9999998877763 3334444322 455556678899999998765333 444457888899999998886 5554
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCC
Q 016605 268 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 343 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~ 343 (386)
.+- +|- ....+.++.+++...+..+|...+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++
T Consensus 172 ~i~------DTv----G~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiG-ERaGN 240 (526)
T TIGR00977 172 VLC------DTN----GGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYG-ERCGN 240 (526)
T ss_pred EEe------cCC----CCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-CccCC
Confidence 332 442 2357788888888888777753233221 111222223466889999987 33310 12445
Q ss_pred CChhHHHHHHH-HcCC
Q 016605 344 NDFDADQLMFK-VLGL 358 (386)
Q Consensus 344 ~~~~~~~~~i~-~~G~ 358 (386)
.+.++....++ +.|+
T Consensus 241 a~Le~v~~~L~~~~g~ 256 (526)
T TIGR00977 241 ANLCSLIPNLQLKLGY 256 (526)
T ss_pred CcHHHHHHHHHhhcCC
Confidence 56666655444 3565
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.23 Score=50.40 Aligned_cols=220 Identities=14% Similarity=0.141 Sum_probs=125.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-----cCc-EEEEecCCCCHHHHHHHHHh-
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-----MGM-EVCCTLGMLEKHQAIELKKA- 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-----~g~-~i~~t~g~l~~e~l~~Lk~a- 193 (386)
.++.++-++.++.+.+.|++.+-++. |..+ +..++.+..+.+.... .++ ......+....+.++.-.++
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s-~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~ 177 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF---PGSS-EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEAL 177 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhh
Confidence 48999999999999999999876643 2222 3333333332222211 111 11112222334444444444
Q ss_pred ---ccCeeecccCchH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCe
Q 016605 194 ---GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 266 (386)
Q Consensus 194 ---G~~~v~i~le~~~-~~~~~i~~~--~s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 266 (386)
|.+++.+.+-+.+ ....+++.. ...+...++++.+++.|+. +..++-.+.--+.+.+.+.++.+.+.| ++.
T Consensus 178 ~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G--ad~ 255 (503)
T PLN03228 178 KYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG--ATS 255 (503)
T ss_pred cccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC--CCE
Confidence 7778888776663 333444432 2456667788899999985 444443333334566788888888886 554
Q ss_pred EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 267 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 267 v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
+. .++|- ...++.++.+++...+..+|+ ..+.+.+ .-.++.-.....++.+||+.+ +.|-. .
T Consensus 256 I~------l~DTv----G~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiG-E 324 (503)
T PLN03228 256 VG------IADTV----GINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGIG-E 324 (503)
T ss_pred EE------EecCC----CCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEeccccc-c
Confidence 32 23442 235677888888887776653 2222211 111222223466889999987 33311 1
Q ss_pred cCCCCChhHHHHHHHHcC
Q 016605 340 TTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G 357 (386)
.+++.+.++++.+++..|
T Consensus 325 RaGNa~lEevv~~L~~~~ 342 (503)
T PLN03228 325 RSGNASLEEVVMALKCRG 342 (503)
T ss_pred ccCCccHHHHHHHHHhcc
Confidence 356678888888887754
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.12 Score=52.42 Aligned_cols=215 Identities=13% Similarity=0.109 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHH----HHHHhccC
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAI----ELKKAGLT 196 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~----~Lk~aG~~ 196 (386)
.++.++-++.++.+.+.|++.+-.+. |..+ +..++.+..+.+..+ +..++.- ....++.++ .+++++.+
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~---p~~s-~~d~e~v~~i~~~~~--~~~i~al-~r~~~~did~a~~al~~~~~~ 91 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGF---PVSS-PGDFEAVQRIARTVK--NPRVCGL-ARCVEKDIDAAAEALKPAEKF 91 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEEC---CCCC-HHHHHHHHHHHHhCC--CCEEEEE-cCCCHHhHHHHHHhccccCCC
Confidence 38999999999999999999886542 2122 334444433322222 2343321 122233344 34445778
Q ss_pred eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+|.+.+-+.+ ....+++.+. ..+...++++.+++.|..+..+...+..-+.+.+.+.++.+.+.| ++.+.
T Consensus 92 ~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G--a~~i~----- 164 (494)
T TIGR00973 92 RIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAG--ATTIN----- 164 (494)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC--CCEEE-----
Confidence 8888777663 3344444321 345555788899999998877777666667888999999998886 54332
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc---ceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCCh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKA---MVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF 346 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~---~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~ 346 (386)
.++|- ...++.++.+++...+..+|.. .+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.
T Consensus 165 -l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlG-ERaGNa~l 238 (494)
T TIGR00973 165 -IPDTV----GYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG-ERAGNAAL 238 (494)
T ss_pred -eCCCC----CCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeeccc-ccccCccH
Confidence 34553 2346788888888887777642 222211 111122223466888999987 33311 23566778
Q ss_pred hHHHHHHHH
Q 016605 347 DADQLMFKV 355 (386)
Q Consensus 347 ~~~~~~i~~ 355 (386)
+++...++.
T Consensus 239 e~vv~~L~~ 247 (494)
T TIGR00973 239 EEVVMALKV 247 (494)
T ss_pred HHHHHHHHH
Confidence 887777764
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.28 Score=43.95 Aligned_cols=182 Identities=13% Similarity=0.041 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhH-HHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNF-NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~-~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++-.+.++++++.+.|++.+++ +..++.- ....+ ..+++.++..-...++++.-. .-.+..++.+.++|++.+.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FV--PN~tfG~~~i~~l~~~t~~~~DvHLMv-~~P~~~i~~~~~~gad~It 86 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFI--NNITFGMKTIQAVAQQTRHPLSFHLMV-SSPQRWLPWLAAIRPGWIF 86 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcC--CccccCHHHHHHHHhcCCCCeEEEecc-CCHHHHHHHHHHhCCCEEE
Confidence 34567778888888899988876 3322221 00111 334444443322233332211 1257789999999999999
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+..|+.+ ...+.++.+++.|++. ++-+..+...+.+...+.. ++.+-+..-.| |..
T Consensus 87 ~H~Ea~~-------------~~~~~l~~Ik~~G~k~--GlAlnP~Tp~~~i~~~l~~-------vD~VlvMsV~P--Gf~ 142 (210)
T PRK08005 87 IHAESVQ-------------NPSEILADIRAIGAKA--GLALNPATPLLPYRYLALQ-------LDALMIMTSEP--DGR 142 (210)
T ss_pred EcccCcc-------------CHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHHHHh-------cCEEEEEEecC--CCc
Confidence 9888631 1236778888999865 4444445555665554432 45666666555 543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCc
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~ 337 (386)
-+.. ..+.++.+..+|.+.+...|.+.+| +..+.-.....+|||.++.|..
T Consensus 143 GQ~f----~~~~~~KI~~l~~~~~~~~I~VDGG---I~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 143 GQQF----IAAMCEKVSQSREHFPAAECWADGG---ITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred ccee----cHHHHHHHHHHHHhcccCCEEEECC---CCHHHHHHHHHCCCCEEEEChH
Confidence 2211 2334455566666666544566553 3344445678899999988863
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.16 Score=44.06 Aligned_cols=194 Identities=18% Similarity=0.202 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-eccc----CCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhcc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAW----RDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~----~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
+...+.++++++.+.|++-+++ +..+ +.|.|. -+.+.++.-... -+.+..-. .-.+..++.+.++|+
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~-----pvV~slR~~~~~~~ffD~HmMV-~~Peq~V~~~a~aga 88 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGP-----PVVESLRKHTGADPFFDVHMMV-ENPEQWVDQMAKAGA 88 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCcccch-----HHHHHHHhccCCCcceeEEEee-cCHHHHHHHHHhcCc
Confidence 4566777888888999988765 2222 223342 233333332211 12222111 125778999999999
Q ss_pred CeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 196 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
+.+.+..|..+ .+.+.++.+++.|+.+++.+=. |...+++...+.. ++.+-+...-|
T Consensus 89 s~~tfH~E~~q-------------~~~~lv~~ir~~Gmk~G~alkP--gT~Ve~~~~~~~~-------~D~vLvMtVeP- 145 (224)
T KOG3111|consen 89 SLFTFHYEATQ-------------KPAELVEKIREKGMKVGLALKP--GTPVEDLEPLAEH-------VDMVLVMTVEP- 145 (224)
T ss_pred ceEEEEEeecc-------------CHHHHHHHHHHcCCeeeEEeCC--CCcHHHHHHhhcc-------ccEEEEEEecC-
Confidence 99998777642 1457778899999987776554 4455555554431 45666666555
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
| ++.+.. .+++...+...|.-+|+..|.+.+| +++..-..+..+|||.++.|..+..+ .+..+.+..|++
T Consensus 146 -G--FGGQkF--me~mm~KV~~lR~kyp~l~ievDGG---v~~~ti~~~a~AGAN~iVaGsavf~a--~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 146 -G--FGGQKF--MEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGA--ADPSDVISLLRN 215 (224)
T ss_pred -C--Cchhhh--HHHHHHHHHHHHHhCCCceEEecCC---cCcchHHHHHHcCCCEEEecceeecC--CCHHHHHHHHHH
Confidence 3 222222 4667777888898999988888865 34444466778999999988755533 456677776665
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.42 Score=47.25 Aligned_cols=191 Identities=15% Similarity=0.201 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEe-cC--CCCHHHHHHHHHhccC
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LG--MLEKHQAIELKKAGLT 196 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t-~g--~l~~e~l~~Lk~aG~~ 196 (386)
.++.++-++.++.+.+.|++.+-.+.. ..-+.-.+.++.+. ..+..+++. .+ ......++.+.++|++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p--------~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~ 91 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFP--------VASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVD 91 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCC--------cCChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCC
Confidence 489999999999999999988765431 11123334444443 333311111 11 1345578999999999
Q ss_pred eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
.+.+-+.+.+ -...+++... ..+...++++.+++.|+.+.....-....+.+.+.+.++.+...| ++.+.
T Consensus 92 ~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g--a~~i~----- 164 (409)
T COG0119 92 RIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG--ADRIN----- 164 (409)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC--CcEEE-----
Confidence 9998887773 3333443222 466677788999999988776555555677888899998888765 43433
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-cceeecCcccccC--hhHHHhhhhcCcccc
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLSAGRVRFS--MPEQALCFLAGANSI 332 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~-~~i~i~~g~~~~~--~~~~~~~l~~Gan~~ 332 (386)
.++|- ...++.++.+++...+..+|+ ..+.+.+ ...++ -.....++.+||+.+
T Consensus 165 -l~DTv----G~~~P~~~~~~i~~l~~~v~~~~~l~~H~-HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 165 -LPDTV----GVATPNEVADIIEALKANVPNKVILSVHC-HNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred -ECCCc----CccCHHHHHHHHHHHHHhCCCCCeEEEEe-cCCcchHHHHHHHHHHcCCcEE
Confidence 23443 335678888888888888874 4443322 11122 123467889999988
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.45 Score=42.29 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCH--HHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEK--HQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~--e~l~~Lk~aG~~~ 197 (386)
.++++.++.++.+ +.|++-+-++. ++..+.-.+.++.+++. +..+....-.++. ..++.+.++|.+.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~--------~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGT--------PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 5789999999988 67776554432 23333445666666543 3333222111222 3689999999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
+.+..++. .....+.++.+++.|+.+...++ +..+..+++ ..+.+++ ++.+.++ |+
T Consensus 80 i~vh~~~~------------~~~~~~~i~~~~~~g~~~~~~~~-~~~t~~~~~----~~~~~~g--~d~v~~~-----pg 135 (206)
T TIGR03128 80 VTVLGVAD------------DATIKGAVKAAKKHGKEVQVDLI-NVKDKVKRA----KELKELG--ADYIGVH-----TG 135 (206)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEec-CCCChHHHH----HHHHHcC--CCEEEEc-----CC
Confidence 98765542 12234677788899987655322 122222333 3334554 6666552 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
+.-....+...+. +...+..++...+-+.+| + ..+.-...+.+||+.+..|..+.. ..++.+..+.++
T Consensus 136 ~~~~~~~~~~~~~----i~~l~~~~~~~~i~v~GG-I--~~~n~~~~~~~Ga~~v~vGsai~~--~~d~~~~~~~l~ 203 (206)
T TIGR03128 136 LDEQAKGQNPFED----LQTILKLVKEARVAVAGG-I--NLDTIPDVIKLGPDIVIVGGAITK--AADPAEAARQIR 203 (206)
T ss_pred cCcccCCCCCHHH----HHHHHHhcCCCcEEEECC-c--CHHHHHHHHHcCCCEEEEeehhcC--CCCHHHHHHHHH
Confidence 2211122223332 333334444433332332 2 333345667899999988764332 234555555554
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.13 Score=49.60 Aligned_cols=214 Identities=13% Similarity=0.128 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc----CcEEEE----ecCC------CCHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCC----TLGM------LEKHQA 187 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~----g~~i~~----t~g~------l~~e~l 187 (386)
+..++.+-.++.+.+.|+..+-+.||-+...---.+-++=++.++++|+. .++... ..|. +.+..+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 77899999999999999988888776432100000113334445555532 122111 1122 234445
Q ss_pred HHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHHhcCCCCCC
Q 016605 188 IELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 188 ~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~ 265 (386)
++..+.|+|.+-+ |+.++ +..+...+++.+++.|.++...+.|-. -.|.+-..+.++.+.+++ ++
T Consensus 105 ~ka~~nGidvfRi--------FDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g--~D 171 (472)
T COG5016 105 EKAAENGIDVFRI--------FDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG--VD 171 (472)
T ss_pred HHHHhcCCcEEEe--------chhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC--CC
Confidence 5556668776655 33333 233444677888999998777776655 789999999999999997 77
Q ss_pred eEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCccccccCCc-cc-cCC
Q 016605 266 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGEK-LL-TTP 342 (386)
Q Consensus 266 ~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~~~g~~-~~-t~~ 342 (386)
+|.|--. .| ..++.+..+++..++..++- .+++.+ ..-++..-....++.+|++.+-+.-. +. .+.
T Consensus 172 SIciKDm---aG-------lltP~~ayelVk~iK~~~~~-pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gts 240 (472)
T COG5016 172 SICIKDM---AG-------LLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTS 240 (472)
T ss_pred EEEeecc---cc-------cCChHHHHHHHHHHHHhcCC-eeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCC
Confidence 7765431 12 24677888888888888872 333321 11233333456688999998832211 11 133
Q ss_pred CCChhHHHHHHHHcCCC
Q 016605 343 NNDFDADQLMFKVLGLT 359 (386)
Q Consensus 343 ~~~~~~~~~~i~~~G~~ 359 (386)
-+..+-+...++..||.
T Consensus 241 qP~tEtmv~aL~gt~yD 257 (472)
T COG5016 241 QPATETMVAALRGTGYD 257 (472)
T ss_pred CCcHHHHHHHhcCCCCC
Confidence 45566666666665553
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.56 Score=42.39 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHH-hhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~i-k~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+.-.+.++++.+.+.|++.+++ +..++.- .+-..-..+++.++.. ....++++.-. .-.+..++.+.++|++.+.
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fv-pn~tfg~~~i~~i~~~~~~~~~dvHLMv-~~p~~~i~~~~~~gad~i~ 86 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYV-PNLTFGAPICKALRDYGITAPIDVHLMV-KPVDRIIPDFAKAGASMIT 86 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccc-CccccCHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHHHHHhCCCEEE
Confidence 34567778888888889988876 3322211 0001113444444443 12233332211 1257789999999999999
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+.+|+.+ ...+.++.+++.|++. ++.+..+...+.+...+. . ++.+-+....| |+.
T Consensus 87 ~H~Ea~~-------------~~~~~l~~ik~~g~k~--GlalnP~Tp~~~i~~~l~---~----~D~vlvMtV~P--Gfg 142 (220)
T PRK08883 87 FHVEASE-------------HVDRTLQLIKEHGCQA--GVVLNPATPLHHLEYIMD---K----VDLILLMSVNP--GFG 142 (220)
T ss_pred EcccCcc-------------cHHHHHHHHHHcCCcE--EEEeCCCCCHHHHHHHHH---h----CCeEEEEEecC--CCC
Confidence 9888631 1336677888899864 444444545555554443 2 45666666555 554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
-+..-+.+.+ .+..+|.+.++ ..+.+.+ ++..+.-.....+||+.++.|..+ .. ..++.+.++.+++
T Consensus 143 Gq~fi~~~le----kI~~l~~~~~~~~~~~~I~vdG---GI~~eni~~l~~aGAd~vVvGSaI-f~-~~d~~~~i~~l~~ 213 (220)
T PRK08883 143 GQSFIPHTLD----KLRAVRKMIDESGRDIRLEIDG---GVKVDNIREIAEAGADMFVAGSAI-FG-QPDYKAVIDEMRA 213 (220)
T ss_pred CceecHhHHH----HHHHHHHHHHhcCCCeeEEEEC---CCCHHHHHHHHHcCCCEEEEeHHH-hC-CCCHHHHHHHHHH
Confidence 3222222333 33444444332 1233333 233444456778999999888633 22 2345555555544
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.7 Score=45.46 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-c---C-cEEEEecCCCCHHHHHHHHHhc-
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---G-MEVCCTLGMLEKHQAIELKKAG- 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~---g-~~i~~t~g~l~~e~l~~Lk~aG- 194 (386)
.++.++-++.++.+.+.|++.|-.+. |..+ |..++.+..+.+.++. . + +...+..+....+.++.-.+++
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~S-p~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~ 179 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGF---PIAS-PDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVK 179 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---cCCC-ccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhc
Confidence 48999999999999999999887643 2122 3345554444333321 1 1 1222223334566666666663
Q ss_pred -c--CeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe-eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 195 -L--TAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 195 -~--~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v 267 (386)
+ .++.+.+-+.+ -...+++.+. ..+...++++.+++.|.. +..+.-.+..-+.+.+.+.++.+.+.| ++.+
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG--a~~I 257 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG--ATTL 257 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcC--CCEE
Confidence 3 24666655553 2333443221 345555677888889874 555555444456788888889888886 5543
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 268 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
. .++|- ....+.++.+++...+..+|. ..+.+.+ .-.++.--....++.+||..+ +.|-. ..
T Consensus 258 ~------L~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlG-ER 326 (632)
T PLN02321 258 N------IPDTV----GYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIG-ER 326 (632)
T ss_pred E------ecccc----cCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 2 33443 234678888888888877764 2222211 111121122356889999987 33321 23
Q ss_pred CCCCChhHHHHHHHHcC
Q 016605 341 TPNNDFDADQLMFKVLG 357 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G 357 (386)
+++.+.++++.+++..|
T Consensus 327 aGNa~LEevv~~L~~~~ 343 (632)
T PLN02321 327 AGNASLEEVVMAIKCRG 343 (632)
T ss_pred ccCccHHHHHHHHHhcc
Confidence 66778888888887644
|
|
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.3 Score=42.46 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC-----cEEEEecCCCCHH----HHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG-----MEVCCTLGMLEKH----QAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g-----~~i~~t~g~l~~e----~l~~Lk 191 (386)
.++++|=++.++.+.+.|++.+-.+ .|..+ +.. .+.++.+.+.+ ..++.-+- ...+ .++.++
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG---~Pa~s-~~e----~e~ir~I~~~~~~~~~~~i~~~~r-~~~~dId~a~e~~~ 120 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVA---FPSAS-QTD----FDFVRKLIDERRIPDDVTIEALTQ-SRPDLIARTFEALA 120 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEee---CCCCC-HHH----HHHHHHHHHhCCCCCCcEEEEEec-CcHHHHHHHHHHhC
Confidence 4899999999999999999988654 23323 223 44444443332 23332222 2233 344444
Q ss_pred HhccCeeecccCchHH-HHhhhCCCCCHH----HHHHHHHHHHHcCCe---eeEeEEeec-CC---CHHHHHHHHHHHhc
Q 016605 192 KAGLTAYNHNLDTSRE-FYSKIITTRSYD----ERLETLKHVREAGIN---VCSGGIIGL-GE---AEEDRVGLLHTLAT 259 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~-~~~~i~~~~s~~----~~l~~i~~a~~~Gi~---v~~~~i~Gl-ge---t~ed~~~~l~~l~~ 259 (386)
+++..+|++.+-+.+- ...+++ ++.+ ...++++.+++.|.. ....+-+|. .- ..+-+.+.++.+.+
T Consensus 121 ~~~~~~Vhi~~p~Sd~h~~~kl~--~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~ 198 (333)
T PRK14847 121 GSPRAIVHLYNPIAPQWRRIVFG--MSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSA 198 (333)
T ss_pred CCCCCEEEEEecCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHH
Confidence 4445668888877743 333443 3444 455677788888652 112345555 22 34555556665533
Q ss_pred C-CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeec-CcccccChhHHHhhhhcCcccc--
Q 016605 260 L-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLS-AGRVRFSMPEQALCFLAGANSI-- 332 (386)
Q Consensus 260 l-~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~-~g~~~~~~~~~~~~l~~Gan~~-- 332 (386)
. | ++..+...+. .+.|- ...++.++.+++...+..+++ ..+.+. ..-.++.-.....++.+||+.+
T Consensus 199 ~~g--a~r~~a~~i~-l~DTV----G~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~ 271 (333)
T PRK14847 199 IWG--PTPQRKMIIN-LPATV----ESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEG 271 (333)
T ss_pred HhC--CCccCCcEEE-eCCcc----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 3 4 3333333332 34443 234677777777766555542 222111 1112222233466889999987
Q ss_pred -ccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 333 -FTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 333 -~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
+.|-. ..+++.+.++++..+...|...
T Consensus 272 tv~G~G-ERaGNa~lE~v~~~L~~~g~~~ 299 (333)
T PRK14847 272 CLFGNG-ERTGNVDLVALALNLERQGIAS 299 (333)
T ss_pred eCCcCC-ccccchhHHHHHHHHHhcCCCC
Confidence 22221 1267788999999998887653
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.85 Score=41.42 Aligned_cols=199 Identities=16% Similarity=0.173 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcC----cEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMG----MEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g----~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.++-.+.++++.+.+.|++.+++ ...++.. | ++..=.+.++.+++.+ +.+.+-. .-....++.+.++|+|
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fv---p-n~~~G~~~v~~lr~~~~~~~lDvHLm~-~~p~~~i~~~~~~Gad 90 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFV---P-NLSFGPPVVKSLRKHLPNTFLDCHLMV-SNPEKWVDDFAKAGAS 90 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccC---C-CcCcCHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHHcCCC
Confidence 45567788888888899988876 2222211 1 1111123444444332 3332221 1246678899999999
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.+.+..|+.+ +...++++.+++.|..+...+. .....+++...+ + .+ .++.|-+... .|
T Consensus 91 ~itvH~ea~~------------~~~~~~l~~ik~~G~~~gval~--p~t~~e~l~~~l---~-~~-~vD~Vl~m~v--~p 149 (228)
T PTZ00170 91 QFTFHIEATE------------DDPKAVARKIREAGMKVGVAIK--PKTPVEVLFPLI---D-TD-LVDMVLVMTV--EP 149 (228)
T ss_pred EEEEeccCCc------------hHHHHHHHHHHHCCCeEEEEEC--CCCCHHHHHHHH---c-cc-hhhhHHhhhc--cc
Confidence 9998776531 1134677788889976654443 333455554332 1 11 1344444333 33
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
|..-.. .. ...+..+...|.+.+...+.+.+| +....-.....+|||.++.|. .++. ..++.+.++.|++
T Consensus 150 G~~gq~---~~-~~~~~ki~~~~~~~~~~~I~VdGG---I~~~ti~~~~~aGad~iVvGs-aI~~-a~d~~~~~~~i~~ 219 (228)
T PTZ00170 150 GFGGQS---FM-HDMMPKVRELRKRYPHLNIQVDGG---INLETIDIAADAGANVIVAGS-SIFK-AKDRKQAIELLRE 219 (228)
T ss_pred CCCCcE---ec-HHHHHHHHHHHHhcccCeEEECCC---CCHHHHHHHHHcCCCEEEEch-HHhC-CCCHHHHHHHHHH
Confidence 443211 11 222333444555666545555553 333444567789999998886 4443 3356666666654
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.1 Score=40.02 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+...+.++++.+.+.|.+-+++ +..++.- .+-..-..+++.++...+..+.+..-.- -.+..++.+.++|++.|++
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMDghFV-PNiTfGp~~v~~l~~~t~~p~DvHLMV~-~p~~~i~~fa~agad~It~ 90 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMDGHFV-PNITFGPPVVKALRKITDLPLDVHLMVE-NPDRYIEAFAKAGADIITF 90 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCcC-CCcccCHHHHHHHhhcCCCceEEEEecC-CHHHHHHHHHHhCCCEEEE
Confidence 34556677777888889988876 3332221 0111114555555553333333332211 2478899999999999999
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
..|..+ ...++++.+++.|.+.+.. +-.+...+.+...+.. ++.+-+....| |.-
T Consensus 91 H~E~~~-------------~~~r~i~~Ik~~G~kaGv~--lnP~Tp~~~i~~~l~~-------vD~VllMsVnP--Gfg- 145 (220)
T COG0036 91 HAEATE-------------HIHRTIQLIKELGVKAGLV--LNPATPLEALEPVLDD-------VDLVLLMSVNP--GFG- 145 (220)
T ss_pred EeccCc-------------CHHHHHHHHHHcCCeEEEE--ECCCCCHHHHHHHHhh-------CCEEEEEeECC--CCc-
Confidence 887422 1236677888888765543 3233333333333322 46777777766 322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---cceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPK---AMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.+.. ..+.+..+..+|.+.++ ..|.+.+| +..+....+..+|||.++.|.
T Consensus 146 -GQ~F--i~~~l~Ki~~lr~~~~~~~~~~IeVDGG---I~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 146 -GQKF--IPEVLEKIRELRAMIDERLDILIEVDGG---INLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred -cccc--CHHHHHHHHHHHHHhcccCCeEEEEeCC---cCHHHHHHHHHcCCCEEEEEE
Confidence 2222 23445556667777763 34555553 344555667779999998887
|
|
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=95.82 E-value=2 Score=44.48 Aligned_cols=228 Identities=15% Similarity=0.033 Sum_probs=124.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCC---CHHHHHHHHHhcc
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGML---EKHQAIELKKAGL 195 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l---~~e~l~~Lk~aG~ 195 (386)
..++.++=++.++.+.+.|++.+-.+ .|... +..++.+..+++... ..+..++.-.-.. -+..++.+..++.
T Consensus 43 ~~~s~e~Ki~ia~~L~~~Gvd~IE~G---fp~~s-~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~ 118 (564)
T TIGR00970 43 DPMSPARKRRYFDLLVRIGFKEIEVG---FPSAS-QTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKR 118 (564)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCC-HHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCC
Confidence 34899999999999999999988654 22222 334444444443311 0133332211111 1233444444444
Q ss_pred CeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe------eeEeEEeecC----CCHHHHHHHHHHHhcCCC
Q 016605 196 TAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN------VCSGGIIGLG----EAEEDRVGLLHTLATLPT 262 (386)
Q Consensus 196 ~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~------v~~~~i~Glg----et~ed~~~~l~~l~~l~~ 262 (386)
..|.+.+-+.+ -...+++.+. ..+...++++.+++.|.. +...+.|+.- -..+.+.++++.+.+.+.
T Consensus 119 ~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~ 198 (564)
T TIGR00970 119 ATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWA 198 (564)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCC
Confidence 46777776663 2333443221 344455566777887763 2224455432 246777888888888752
Q ss_pred C-CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---eeecC-cccccChhHHHhhhhcCcccc---cc
Q 016605 263 H-PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM---VRLSA-GRVRFSMPEQALCFLAGANSI---FT 334 (386)
Q Consensus 263 ~-~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~---i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~ 334 (386)
. ++.... +-.|.|- ...++.++.+++..++..+|+.. +.+-+ .-.++.-.....++.+||..+ +.
T Consensus 199 ~~~~~~~~---i~l~DTv----G~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~ 271 (564)
T TIGR00970 199 PTPERPII---FNLPATV----EMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLF 271 (564)
T ss_pred CccCCeeE---EEecccc----CccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecC
Confidence 0 111111 1234553 34578888888888877776531 22211 111122222456889999987 32
Q ss_pred CCccccCCCCChhHHHHHHHHcCCC
Q 016605 335 GEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 335 g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
|-. ..+++.+.++++.+++..|..
T Consensus 272 G~G-ERaGNa~le~lv~~L~~~g~~ 295 (564)
T TIGR00970 272 GNG-ERTGNVDLVTLALNLYTQGVS 295 (564)
T ss_pred cCC-ccccCccHHHHHHHHHhcCCC
Confidence 221 126778889999989888754
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.7 Score=40.73 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHHcC-----CcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G-----~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.++=++.++.+.+.| ++.+-+.+ .. +...+.+..+++.-.+ ...+... .....+-+++..++|++
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s-----~~-~~d~~~v~~~~~~~~~-~~~v~~~-~r~~~~die~A~~~g~~ 89 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFL-----YT-EKDREAVEACLDRGYK-FPEVTGW-IRANKEDLKLVKEMGLK 89 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecC-----cC-hHHHHHHHHHHHcCCC-CCEEEEE-ecCCHHHHHHHHHcCcC
Confidence 48999999999999999 98886632 11 2234444444331100 1234333 34567778899999999
Q ss_pred eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeec-CCCH-H----HHHHHHHHHhcCCCCCC-e
Q 016605 197 AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGL-GEAE-E----DRVGLLHTLATLPTHPE-S 266 (386)
Q Consensus 197 ~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~-e----d~~~~l~~l~~l~~~~~-~ 266 (386)
.+.+.+-+.+ -...+++.+. ..+...+.++.+++.|+.+..++ -|. ..+. + -+.++++.+.+.| ++ .
T Consensus 90 ~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~G--~~~~ 166 (279)
T cd07947 90 ETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKESG--IPVK 166 (279)
T ss_pred EEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHCC--CCEE
Confidence 9998776653 3444555432 46667778888999998876655 222 1112 1 2333444444454 43 2
Q ss_pred EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh--CCCcceeec-CcccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 267 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV--MPKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 267 v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~--lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+--=+ --.+|+.. ...+++..+++...+.. +|...+.+. ..-.++.-.....++.+||+.+ +.|-. ..
T Consensus 167 i~l~DTv-G~a~P~~~--~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlG-e~ 242 (279)
T cd07947 167 IRLCDTL-GYGVPYPG--ASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIG-ER 242 (279)
T ss_pred EEeccCC-CcCCcccc--ccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 3221100 00223210 11246666777766655 343222221 1111222223466888999987 22211 23
Q ss_pred CCCCChhHHHHHHHHc-CCC
Q 016605 341 TPNNDFDADQLMFKVL-GLT 359 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~-G~~ 359 (386)
+++...+++..+++.. |+.
T Consensus 243 aGN~~tE~lv~~l~~~~g~~ 262 (279)
T cd07947 243 TGNCPLEAMVIEYAQLKGNF 262 (279)
T ss_pred ccchhHHHHHHHHHHhcCCC
Confidence 6678899999999998 864
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.2 Score=47.94 Aligned_cols=213 Identities=9% Similarity=0.027 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHHc--CCcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----------cCCCC
Q 016605 121 LMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----------LGMLE 183 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----------~g~l~ 183 (386)
.++.++.+..+..+.+. |+..+-+.||.+.. ..+ ..++.+..+-+.+.+..+...+. ++...
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e-~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~ 629 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKE-DPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVV 629 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHH
Confidence 38899999999999999 99888877653221 111 12333333333333333333222 12344
Q ss_pred HHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee------c--CCCHHHHHHHHH
Q 016605 184 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------L--GEAEEDRVGLLH 255 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G------l--get~ed~~~~l~ 255 (386)
.+.++...++|++.+.+. ++. ...+....+++.++++|......+.+- . ..+.+-+.+.++
T Consensus 630 ~~~i~~a~~~Gid~~rif-d~l----------nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~ 698 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIF-DSL----------NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAK 698 (1146)
T ss_pred HHHHHHHHHcCCCEEEEe-ccC----------ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 666888889999998874 222 224556678889999997544444442 1 247788888888
Q ss_pred HHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc--
Q 016605 256 TLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI-- 332 (386)
Q Consensus 256 ~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~-- 332 (386)
.+.++| ++.+.+ ++|- ...++.+..+++...|..++ ..+++.+ .-.++.-.....++.+||+.+
T Consensus 699 ~l~~~G--a~~i~i------kDt~----G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 699 ELEKAG--AHILAI------KDMA----GLLKPAAAYELVSALKEEVD-LPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred HHHHcC--CCEEEE------CCcc----CCCCHHHHHHHHHHHHHHcC-CeEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 888886 554433 2322 23567888888888876652 2333321 112222233466889999987
Q ss_pred -ccCCccccCCCCChhHHHHHHHHcCCC
Q 016605 333 -FTGEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 333 -~~g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
+.|= =..+.+++.++++.+++..|+.
T Consensus 766 av~gl-g~~tgn~~le~vv~~L~~~~~~ 792 (1146)
T PRK12999 766 AVASM-SGLTSQPSLNSIVAALEGTERD 792 (1146)
T ss_pred cchhh-cCCcCCHHHHHHHHHHHhcCCC
Confidence 2221 0125667889999999877654
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.056 Score=48.11 Aligned_cols=180 Identities=18% Similarity=0.169 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 124 KDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
.-.+.++++.+.+.|++.+++ +..++..- +-..-..+++.++......++++.-. .-....++.++++|.+.+.+.+
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~fvp-n~~~g~~~i~~i~~~~~~~~DvHLMv-~~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGHFVP-NLTFGPDIIKAIRKITDLPLDVHLMV-ENPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-SB-B-HHHHHHHHTTSSSEEEEEEES-SSGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccccCC-cccCCHHHHHHHhhcCCCcEEEEeee-ccHHHHHHHHHhcCCCEEEEcc
Confidence 345667777888889998876 33222210 01112344444443322223333321 1246789999999999999988
Q ss_pred CchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC
Q 016605 203 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 282 (386)
Q Consensus 203 e~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~ 282 (386)
|+.+ . ..+.++.++++|++++..+- .+...+.+. .++.. ++.+-+....| |..-+.
T Consensus 89 E~~~----------~---~~~~i~~ik~~g~k~Gialn--P~T~~~~~~---~~l~~----vD~VlvMsV~P--G~~Gq~ 144 (201)
T PF00834_consen 89 EATE----------D---PKETIKYIKEAGIKAGIALN--PETPVEELE---PYLDQ----VDMVLVMSVEP--GFGGQK 144 (201)
T ss_dssp GGTT----------T---HHHHHHHHHHTTSEEEEEE---TTS-GGGGT---TTGCC----SSEEEEESS-T--TTSSB-
T ss_pred cchh----------C---HHHHHHHHHHhCCCEEEEEE--CCCCchHHH---HHhhh----cCEEEEEEecC--CCCccc
Confidence 7631 2 23567788889987655443 333333332 22222 56777766554 543211
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 283 QKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 283 ~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. ..+.++.++.+|.+.++ ..|.+.+| +..+.......+|||.++.|.
T Consensus 145 f----~~~~~~KI~~l~~~~~~~~~~~~I~vDGG---I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 145 F----IPEVLEKIRELRKLIPENGLDFEIEVDGG---INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp -----HGGHHHHHHHHHHHHHHHTCGSEEEEESS---ESTTTHHHHHHHT--EEEESH
T ss_pred c----cHHHHHHHHHHHHHHHhcCCceEEEEECC---CCHHHHHHHHHcCCCEEEECH
Confidence 1 22334445555544443 34555553 223334567789999998885
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.7 Score=39.87 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++..-... .|.+.+ .++|+++. ..++++.+-.|..+.|.++.+.++|++.+.++-..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g~~~n----~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FGRGSN----RELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CCCCcc----HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 4455666777799999988642211 132222 35666654 34678888889999999999999999999887655
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----E--eecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----I--IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~----i--~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
+ .+++-..+.++...+. +-+...+ + .|..++..+..+.++.+.+.+ +..+.++..... |+
T Consensus 108 l----------~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G--~~~iiv~~~~~~-g~ 173 (241)
T PRK14024 108 L----------ENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG--CSRYVVTDVTKD-GT 173 (241)
T ss_pred h----------CCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC--CCEEEEEeecCC-CC
Confidence 4 1222222333333221 2122221 1 232233445667777777775 666666654332 22
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHH-hhh-hcCccccccCCccccCCCCChhHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA-LCF-LAGANSIFTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~-~~l-~~Gan~~~~g~~~~t~~~~~~~~~~~~ 352 (386)
- ..++.+.+.++. ... +..+-.++|-.+. .+... ..+ ..||+.++.|..+. ....+.++.+..
T Consensus 174 ~----~G~d~~~i~~i~----~~~-~ipviasGGi~s~-~D~~~l~~~~~~GvdgV~igra~~-~g~~~~~~~~~~ 238 (241)
T PRK14024 174 L----TGPNLELLREVC----ART-DAPVVASGGVSSL-DDLRALAELVPLGVEGAIVGKALY-AGAFTLPEALAV 238 (241)
T ss_pred c----cCCCHHHHHHHH----hhC-CCCEEEeCCCCCH-HHHHHHhhhccCCccEEEEeHHHH-cCCCCHHHHHHH
Confidence 1 223333322222 222 2122233332222 22211 112 35999998886333 344566665443
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.8 Score=39.44 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=125.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-----CcEEEEecCCCCHHHHHHHHHh-
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKA- 193 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-----g~~i~~t~g~l~~e~l~~Lk~a- 193 (386)
..++.++-++.++.+.+.|++.+-++ .|..+ +.-.+.++.+.+. +..+.. ......+.++.-.++
T Consensus 18 ~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~-----~~e~e~~~~i~~~~~~~~~~~~~a-l~r~~~~die~a~~~~ 88 (284)
T cd07942 18 EPMSVEQKLRFFKLLVKIGFKEIEVG---FPSAS-----QTDFDFVRELIEEDLIPDDVTIQV-LTQAREDLIERTFEAL 88 (284)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCC-----HHHHHHHHHHHHccCCCCCCEEEE-EcCCChhhHHHHHHHh
Confidence 34899999999999999999988664 23222 3334555555332 233321 122234446666666
Q ss_pred -ccC--eeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe---eeEeEEeec----CCCHHHHHHHHHHHhcC
Q 016605 194 -GLT--AYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN---VCSGGIIGL----GEAEEDRVGLLHTLATL 260 (386)
Q Consensus 194 -G~~--~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~---v~~~~i~Gl----get~ed~~~~l~~l~~l 260 (386)
|++ .+.+.+-+.+ -...+++.+. ..+...+.++.+++.|++ ....+-|+. --..+.+.++++.+.+.
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 89 RGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDV 168 (284)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHh
Confidence 665 5777666653 3334454322 345556677788888875 233444443 12456677777777655
Q ss_pred -CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-eeec-Cccc--ccChhHHHhhhhcCcccc---
Q 016605 261 -PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-VRLS-AGRV--RFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 261 -~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~-i~i~-~g~~--~~~~~~~~~~l~~Gan~~--- 332 (386)
+..++.+. . +-.++|- ...++.++.+++...+..+|... +.+. .... ++.-.....++.+||..+
T Consensus 169 ~~~g~~~~~--~-i~laDTv----G~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~ 241 (284)
T cd07942 169 WQPTPENKI--I-LNLPATV----EVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVEGT 241 (284)
T ss_pred hcCCCCcce--E-EEccccc----cccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEEee
Confidence 10122111 1 1233442 24577788888887777766421 1121 1111 122223456888999987
Q ss_pred ccCCccccCCCCChhHHHHHHHHcCCC
Q 016605 333 FTGEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 333 ~~g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
+.|-. ..+++...++.+.+++..|..
T Consensus 242 ~~g~G-eRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 242 LFGNG-ERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred CccCC-ccccchhHHHHHHHHHhcCCC
Confidence 22211 126778899999999887764
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.5 Score=38.98 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.++.++.+.+.|++.+++..-... ......-+++++.+.+ .++++...-|..+.+.++.+..+|++.+.++-...
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~----~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITAS----SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcc----cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 344455666789999887642211 1122334566666653 46788888999999999999999999998876554
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcC---CeeeEeEE--------------ee-cCCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAG---INVCSGGI--------------IG-LGEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~G---i~v~~~~i--------------~G-lget~ed~~~~l~~l~~l~~~~~~v 267 (386)
. +++...+. .+..| +-+..++- -| ..++..+..+.++.+.+.+ ++.+
T Consensus 108 ~----------~p~~~~~~---~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G--~~~i 172 (254)
T TIGR00735 108 K----------NPELIYEL---ADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG--AGEI 172 (254)
T ss_pred h----------ChHHHHHH---HHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC--CCEE
Confidence 1 12211121 12223 22333221 11 1224556778888888886 6777
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcC-ccccccCCccccCCCCCh
Q 016605 268 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDF 346 (386)
Q Consensus 268 ~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~G-an~~~~g~~~~t~~~~~~ 346 (386)
.++.... .|+ .+.+..+. + ...+...+ ..+-.++|-.+ .+.-...+..| |+.++.|. .......++
T Consensus 173 ivt~i~~-~g~----~~g~~~~~-~---~~i~~~~~-ipvia~GGi~s--~~di~~~~~~g~~dgv~~g~-a~~~~~~~~ 239 (254)
T TIGR00735 173 LLTSMDK-DGT----KSGYDLEL-T---KAVSEAVK-IPVIASGGAGK--PEHFYEAFTKGKADAALAAS-VFHYREITI 239 (254)
T ss_pred EEeCcCc-ccC----CCCCCHHH-H---HHHHHhCC-CCEEEeCCCCC--HHHHHHHHHcCCcceeeEhH-HHhCCCCCH
Confidence 7765432 233 12233322 2 22222222 12222332222 22234455656 99988776 333456789
Q ss_pred hHHHHHHHHcCCCc
Q 016605 347 DADQLMFKVLGLTP 360 (386)
Q Consensus 347 ~~~~~~i~~~G~~p 360 (386)
++....+++.|+..
T Consensus 240 ~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 240 GEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHCCCcc
Confidence 99999999999753
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.3 Score=40.62 Aligned_cols=201 Identities=15% Similarity=0.156 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+++..-.....+.+ .-+++++.+++ .++++....|..+.+.++.+.+.|++.+.++-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~----~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~ 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRE----TMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCc----ccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh
Confidence 445555666778999888754221111112 23456666653 4678888899999999999999999998876433
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee------------cCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------------LGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G------------lget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
. .+++...+..+.+.+..+.+..++-.+ ..++..+..+.++.+.+.+ ++.+.++..
T Consensus 104 ~----------~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G--~d~i~v~~i 171 (243)
T cd04731 104 V----------ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSM 171 (243)
T ss_pred h----------hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCC--CCEEEEecc
Confidence 2 123333333333332223344433211 1234556677777777776 777777664
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhc-CccccccCCccccCCCCChhHHHH
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA-GANSIFTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~-Gan~~~~g~~~~t~~~~~~~~~~~ 351 (386)
.. .|+. +.+.. ++++. .+... +..+-..+| +. +++.-...+.. ||+.++.|. .+.....+.++..+
T Consensus 172 ~~-~g~~----~g~~~-~~i~~---i~~~~-~~pvia~GG-i~-~~~di~~~l~~~g~dgv~vg~-al~~~~~~~~~~~~ 238 (243)
T cd04731 172 DR-DGTK----KGYDL-ELIRA---VSSAV-NIPVIASGG-AG-KPEHFVEAFEEGGADAALAAS-IFHFGEYTIAELKE 238 (243)
T ss_pred CC-CCCC----CCCCH-HHHHH---HHhhC-CCCEEEeCC-CC-CHHHHHHHHHhCCCCEEEEeH-HHHcCCCCHHHHHH
Confidence 43 2331 12222 22222 22222 211222222 21 12222334555 899998886 33344457777666
Q ss_pred HHHH
Q 016605 352 MFKV 355 (386)
Q Consensus 352 ~i~~ 355 (386)
.+++
T Consensus 239 ~~~~ 242 (243)
T cd04731 239 YLAE 242 (243)
T ss_pred HHhh
Confidence 6553
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.9 Score=40.97 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEE--ecCC-----CCHHHHHHHHHhcc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLGM-----LEKHQAIELKKAGL 195 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~--t~g~-----l~~e~l~~Lk~aG~ 195 (386)
+.++-.+.++.+.+.|.+.|+.+-. .+.......+..+.++++.+++.|+.+.+ ++.. .+...+..+++.|+
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~-~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLL-IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecc-cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 4567788889999999998865431 12111124678899999999999998544 3332 25667888889888
Q ss_pred Ceeeccc
Q 016605 196 TAYNHNL 202 (386)
Q Consensus 196 ~~v~i~l 202 (386)
+.+-+..
T Consensus 93 ~glRlD~ 99 (360)
T COG3589 93 DGLRLDY 99 (360)
T ss_pred hheeecc
Confidence 8776643
|
|
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.58 Score=45.76 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=81.5
Q ss_pred CChhhHHHHHHHHHHHhhcCcE-EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC--C-HHHHHHHHHH
Q 016605 153 GRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR--S-YDERLETLKH 227 (386)
Q Consensus 153 ge~~~~~~l~~~i~~ik~~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~--s-~~~~l~~i~~ 227 (386)
|+|..++.+-..++.+++..+. ..++|. .-++.+..+++ +..+.++++.. +..++++.++- + |+..++.++.
T Consensus 363 gepi~yp~in~f~k~lH~k~issflvtna-q~pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 363 GEPIMYPEINPFAKLLHQKLISSFLVTNA-QFPEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred cccccchhhhHHHHHHHhccchHHhcccc-cChHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 4566777888888888876555 334443 45677777776 67788889888 88888887654 2 4555666666
Q ss_pred HHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC---CCCCCCCCCHHHHHHHHH
Q 016605 228 VREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT---PLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 228 a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT---~l~~~~~~s~~e~~~~~a 296 (386)
+++.--....-+.+--|-+.+|+.+-.+.++.= .++++-+.--.-.... ++.....+..++..+...
T Consensus 440 lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rg--lp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~ 509 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRG--LPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVF 509 (601)
T ss_pred HHHhhcceEEEEEEeccccccccHHHHHHHhcc--CCceEEEeceeEecccccCcccccCccHHHHHHHHHH
Confidence 664322222323221245667887777777433 2667666444333322 222233345555555443
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=2.2 Score=40.03 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh----hhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~----~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+++++++.+.++.+.|++-+-++|-.+.++.++ ..++++...|+.+++ .++.+ +..+...+.++.--++|++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~I--SIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWI--SVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEECCCHHHHHHHHHcCCC
Confidence 6899999999999999998777765333232222 345667778888874 35443 4445667777777777877
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 113 iIN 115 (282)
T PRK11613 113 IIN 115 (282)
T ss_pred EEE
Confidence 764
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.6 Score=40.48 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcC--cEEEEecCCCC-HHH-HHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLE-KHQ-AIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g--~~i~~t~g~l~-~e~-l~~Lk~aG~~~ 197 (386)
.+.++.++.++++...+..-+-+ | -++....=.+.++.+++.+ ..+.+..-..+ +.. ++.+.++|++.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKv-G-------~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~ 253 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEA-G-------TPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA 253 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEE-C-------HHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence 57788888777765443321222 2 2444444467788887654 34444433322 222 77889999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee-eeecC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA-LLAVK 276 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~-f~P~~ 276 (386)
+.+..++. .+...++++.+++.|+.+.++++ +. +|..+..+- + .. .++.+.++. .-|
T Consensus 254 vTVH~ea~------------~~ti~~ai~~akk~GikvgVD~l-np-~tp~e~i~~---l-~~--~vD~Vllht~vdp-- 311 (391)
T PRK13307 254 VVISGLAP------------ISTIEKAIHEAQKTGIYSILDML-NV-EDPVKLLES---L-KV--KPDVVELHRGIDE-- 311 (391)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEEc-CC-CCHHHHHHH---h-hC--CCCEEEEccccCC--
Confidence 99866543 22345678889999976655433 22 344333332 2 22 267777765 322
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
++. .+... .+...|.+..+..+.+.+| ++.+.-...+.+||+.++.|. .++. ..++.+..+.++
T Consensus 312 ~~~-----~~~~~----kI~~ikk~~~~~~I~VdGG---I~~eti~~l~~aGADivVVGs-aIf~-a~Dp~~aak~l~ 375 (391)
T PRK13307 312 EGT-----EHAWG----NIKEIKKAGGKILVAVAGG---VRVENVEEALKAGADILVVGR-AITK-SKDVRRAAEDFL 375 (391)
T ss_pred Ccc-----cchHH----HHHHHHHhCCCCcEEEECC---cCHHHHHHHHHcCCCEEEEeH-HHhC-CCCHHHHHHHHH
Confidence 211 11222 3333444444444555543 333434567789999998886 3433 234555444444
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=94.45 E-value=3.5 Score=36.93 Aligned_cols=177 Identities=19% Similarity=0.226 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++.+.+..-.....|. .+.++.+++ .++++..-.+..+++.++.+.++|++.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~-------~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGS-------LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCC-------HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 445577788888888999988876422222222 233444442 256665545567788999999999999998
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
+.... +.+...+.++.+...|+.+ ++.. .+.+++.. +.+++ ++.+.++ +..++.+
T Consensus 101 ~~~~~-----------~~~~~~~~~~~~~~~g~~~----~v~v-~~~~e~~~----~~~~g--~~~i~~t---~~~~~~~ 155 (217)
T cd00331 101 IVAAL-----------DDEQLKELYELARELGMEV----LVEV-HDEEELER----ALALG--AKIIGIN---NRDLKTF 155 (217)
T ss_pred eeccC-----------CHHHHHHHHHHHHHcCCeE----EEEE-CCHHHHHH----HHHcC--CCEEEEe---CCCcccc
Confidence 65332 1233445556667778765 2222 25666433 44454 6666655 3333322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
.++.+. +...+..+|....-+..|-++ .++.-...+.+||+.++.|..+.
T Consensus 156 ----~~~~~~----~~~l~~~~~~~~pvia~gGI~-s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 156 ----EVDLNT----TERLAPLIPKDVILVSESGIS-TPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred ----CcCHHH----HHHHHHhCCCCCEEEEEcCCC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 223322 223333343212222222222 12333566778999998887433
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=93.86 E-value=9.2 Score=39.55 Aligned_cols=223 Identities=13% Similarity=0.102 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-----CcEEEEecCCCCHHHHHH----H
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIE----L 190 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-----g~~i~~t~g~l~~e~l~~----L 190 (386)
..++.++=++.++.+.+.|++.+-.+ .|..+ +.. .+.++.+.+. +..++.-.- .....++. +
T Consensus 47 v~~s~~~Ki~ia~~L~~~GV~~IE~G---fP~~s-~~e----~e~v~~i~~~~~~~~~~~i~~l~r-~~~~di~~a~~a~ 117 (552)
T PRK03739 47 EPMSPERKLRMFDLLVKIGFKEIEVG---FPSAS-QTD----FDFVRELIEEGLIPDDVTIQVLTQ-AREHLIERTFEAL 117 (552)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE---CCCcC-hHH----HHHHHHHHHhcCCCCCCEEEEEec-cchhHHHHHHHHh
Confidence 34899999999999999999988664 23222 223 3444444322 233322111 12232333 3
Q ss_pred HHhccCeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCe---eeEeEEeecC----CCHHHHHHHHHHHhcC
Q 016605 191 KKAGLTAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGIN---VCSGGIIGLG----EAEEDRVGLLHTLATL 260 (386)
Q Consensus 191 k~aG~~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~---v~~~~i~Glg----et~ed~~~~l~~l~~l 260 (386)
+.++...+.+.+-+.+ -...+++.+. ..+...++++.+++.|.. ....+.|+.- -+.+.+.++++.+.+.
T Consensus 118 ~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~ 197 (552)
T PRK03739 118 EGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDV 197 (552)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHh
Confidence 3344446777776663 3334444322 345556677777777743 2244555442 2456667777776543
Q ss_pred -CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---
Q 016605 261 -PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 261 -~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
+.+.+.... +-.|+|- ...++.++.+++...+..+|+ ..+.+.+ .-.++.-.....++.+||..+
T Consensus 198 ~~ag~~~~~~---i~l~DTv----G~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gt 270 (552)
T PRK03739 198 WQPTPERKVI---LNLPATV----EMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGC 270 (552)
T ss_pred hcCCCCceeE---EEeccCC----cCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEee
Confidence 112222111 1144553 335778888888877777763 2222211 111122223466889999987
Q ss_pred ccCCccccCCCCChhHHHHHHHHcCCC
Q 016605 333 FTGEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 333 ~~g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
+.|-. ..+++.+.++++.+++..|+.
T Consensus 271 vnG~G-ERaGNa~le~vv~~L~~~g~~ 296 (552)
T PRK03739 271 LFGNG-ERTGNVDLVTLALNLYTQGVD 296 (552)
T ss_pred CCcCc-ccccChhHHHHHHHHHhcCCC
Confidence 22211 125667888888888777763
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=93.77 E-value=10 Score=42.75 Aligned_cols=214 Identities=11% Similarity=0.024 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHH--cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh----cCcEEEEe--c--CC------CCHH
Q 016605 122 MTKDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MGMEVCCT--L--GM------LEKH 185 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~--~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~----~g~~i~~t--~--g~------l~~e 185 (386)
+..++++..+..+.+ .|...+-+.||-+...---...++=++-++.+++ ..++..+. | |. +.+.
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~ 629 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKY 629 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHH
Confidence 678888888888776 3777777776543210000011223344444543 22332222 1 22 2344
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee-------c-CCCHHHHHHHHHHH
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG-------L-GEAEEDRVGLLHTL 257 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G-------l-get~ed~~~~l~~l 257 (386)
.++..++.|+|.+-+ +|++ .+.+....+++.+++.|..+...+.|- . ..|.+-+.++++.+
T Consensus 630 f~~~~~~~Gidifri-fD~l----------N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l 698 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRV-FDSL----------NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVEL 698 (1143)
T ss_pred HHHHHHHcCCCEEEE-CccC----------cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHH
Confidence 555667779887776 3332 356677788999999999888888874 1 23677788888888
Q ss_pred hcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCccccccCC
Q 016605 258 ATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 258 ~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.+.| ++.+.+ ++|- ...++.+..+++...|..+ +..+++. ....++.......++.+||+.+-..-
T Consensus 699 ~~~G--ad~I~i------kDt~----Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai 765 (1143)
T TIGR01235 699 EKAG--AHILGI------KDMA----GLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAV 765 (1143)
T ss_pred HHcC--CCEEEE------CCCc----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecc
Confidence 8886 554433 2332 2356777788888777655 3333332 11122222334668899999872111
Q ss_pred -cc-ccCCCCChhHHHHHHHHcCCC
Q 016605 337 -KL-LTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 337 -~~-~t~~~~~~~~~~~~i~~~G~~ 359 (386)
.+ -.+..++.+.++.+++..|+.
T Consensus 766 ~gl~G~ts~p~~e~~v~~L~~~~~~ 790 (1143)
T TIGR01235 766 DSMSGLTSQPSLGAIVAALEGSERD 790 (1143)
T ss_pred hhhcCCCCCHhHHHHHHHHHhCCCC
Confidence 01 012334577778888877654
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=2.3 Score=42.66 Aligned_cols=89 Identities=9% Similarity=0.005 Sum_probs=59.8
Q ss_pred EEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHH
Q 016605 174 EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRV 251 (386)
Q Consensus 174 ~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~ 251 (386)
++.+..| +.+.++...++|+|.|.++.+.+ -+... ..-+.++..++++.+|+.|.++..++-.-. .+..+.+.
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~~---~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVRN---NEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhhc---cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 3444444 57888899999999999999887 33221 234778899999999999988654432212 33445566
Q ss_pred HHHHHHhcCCCCCCeEee
Q 016605 252 GLLHTLATLPTHPESVPI 269 (386)
Q Consensus 252 ~~l~~l~~l~~~~~~v~~ 269 (386)
+.++.+.+++ ++.+.+
T Consensus 80 ~~l~~l~~~g--vDgvIV 95 (443)
T PRK15452 80 RDLEPVIAMK--PDALIM 95 (443)
T ss_pred HHHHHHHhCC--CCEEEE
Confidence 6666666775 555443
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.77 Score=41.39 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+... ....++++ ||+.. ....+.+.+.++.+++.|+.++.-.. -+.+.++.-++.
T Consensus 72 t~em~~ia~~~---kP~~vtLVPEkr~E~TTegGldv----~~~~~~l~~~i~~l~~~gI~VSLFiD-Pd~~qi~~A~~~ 143 (234)
T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGLDV----AGQAEKLKPIIERLKDAGIRVSLFID-PDPEQIEAAKEV 143 (234)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh----hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 35666665543 34566665 22211 13568899999999999998654332 368999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
|.++|-+.-..+.+.+..-.....+++..++.+.+++.|+.|++ |+|-|.+.+..+..
T Consensus 144 GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnA----GHgLny~Nv~~i~~ 201 (234)
T cd00003 144 GADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNA----GHGLNYENVKPIAK 201 (234)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHHHHHHHh
Confidence 99999875544422111100112466777888888889998876 68888887766553
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.9 Score=38.69 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----ChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g----e~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
++.+++++.+.+..+.|+.-+-+++....++. +....+++..+++.+++. ++.+ +......+.++.--++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEeCCCHHHHHHHHHhCCC
Confidence 78999999999999999987777643332221 123456677777877754 5544 3345667777777777877
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 99 iIN 101 (257)
T cd00739 99 IIN 101 (257)
T ss_pred EEE
Confidence 666
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=93.33 E-value=1 Score=40.70 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+...+ ...++++ ||+.. ....+.+.+.++.+++.|+.++.=.. -+.+.++.-++.
T Consensus 72 ~~emi~ia~~vk---P~~vtLVPEkr~ElTTegGldv----~~~~~~l~~~i~~l~~~gI~VSLFiD-P~~~qi~~A~~~ 143 (237)
T TIGR00559 72 TEEMIRIAEEIK---PEQVTLVPEARDEVTTEGGLDV----ARLKDKLCELVKRFHAAGIEVSLFID-ADKDQISAAAEV 143 (237)
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCccCCcCchh----hhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 357776665543 4567665 22211 12567899999999999998643322 358999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 254 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 254 (386)
|.++|-+.-..+.+.+..-.....++...++.+.+++.|+.|++ |+|-|.+.+..+.
T Consensus 144 GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLny~Nv~~i~ 200 (237)
T TIGR00559 144 GADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNA----GHGLNYHNVKYFA 200 (237)
T ss_pred CcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHhHHHHH
Confidence 99999876555421111100011366677778888888988776 6788877775554
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=2.5 Score=38.06 Aligned_cols=50 Identities=10% Similarity=0.254 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEE
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC 176 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~ 176 (386)
.|+.|||++....+.+.|-+-+-+.+| +|..+..+.|-++++.+.|++..
T Consensus 58 ~~tLeeIi~~m~~a~~~Gk~VvRLhSG------DpsiYgA~~EQm~~L~~~gI~ye 107 (254)
T COG2875 58 SLTLEEIIDLMVDAVREGKDVVRLHSG------DPSIYGALAEQMRELEALGIPYE 107 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEeecC------ChhHHHHHHHHHHHHHHcCCCeE
Confidence 389999999999999999766667664 46778888998888887776543
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.7 Score=38.67 Aligned_cols=102 Identities=18% Similarity=0.113 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.++|+.+..++.+.+-|++.+-++- .. +.-.+.|+.+++.--++.+-.|+ ++.+.++.+.++|.+.+--
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl------~s----p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL------RT----PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec------CC----CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC
Confidence 5899999999999999999886642 11 34556666666432266666666 8999999999999876542
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
|+-+. +.++.+++.|+.+.-+++ |.-|+..-++
T Consensus 92 -------------P~~~~----ev~~~a~~~~ip~~PG~~-----TptEi~~Ale 124 (211)
T COG0800 92 -------------PGLNP----EVAKAANRYGIPYIPGVA-----TPTEIMAALE 124 (211)
T ss_pred -------------CCCCH----HHHHHHHhCCCcccCCCC-----CHHHHHHHHH
Confidence 22222 567888889987554443 5666655443
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=7.1 Score=35.89 Aligned_cols=204 Identities=14% Similarity=0.151 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|++.+++..-.....+. +.-+++++.++ ..++++.+.-|..+.+.++.+.+.|++.+.++-....
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 444455567899999886532211122 33455666665 3467888889999999999999999999988643321
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----------Eeec-C--CCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGG----------IIGL-G--EAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~----------i~Gl-g--et~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+++...+..+...+..+-+..++ +.-. + .+..+..+.++.+.+++ ++.+.++...
T Consensus 109 ----------~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~ii~~~i~ 176 (253)
T PRK02083 109 ----------NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSMD 176 (253)
T ss_pred ----------CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC--CCEEEEcCCc
Confidence 12222222222111112233322 1111 1 12234556666666665 5555554332
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhh-cCccccccCCccccCCCCChhHHHHH
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLM 352 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~-~Gan~~~~g~~~~t~~~~~~~~~~~~ 352 (386)
. .|+. . .++.+ ++..++...+- .+-.++|-.+. .+. ...+. .||+.++.|. .+.....++++.+..
T Consensus 177 ~-~g~~-~---g~d~~----~i~~~~~~~~i-pvia~GGv~s~-~d~-~~~~~~~G~~gvivg~-al~~~~~~~~~~~~~ 243 (253)
T PRK02083 177 R-DGTK-N---GYDLE----LTRAVSDAVNV-PVIASGGAGNL-EHF-VEAFTEGGADAALAAS-IFHFGEITIGELKAY 243 (253)
T ss_pred C-CCCC-C---CcCHH----HHHHHHhhCCC-CEEEECCCCCH-HHH-HHHHHhCCccEEeEhH-HHHcCCCCHHHHHHH
Confidence 1 1332 1 12222 22222222321 22233322221 222 34454 5999998887 444556889999999
Q ss_pred HHHcCCCc
Q 016605 353 FKVLGLTP 360 (386)
Q Consensus 353 i~~~G~~p 360 (386)
+++.|+..
T Consensus 244 ~~~~~~~~ 251 (253)
T PRK02083 244 LAEQGIPV 251 (253)
T ss_pred HHHCCCcc
Confidence 99998754
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.3 Score=37.00 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
..+++++++.+++..+.|+.-+-+++....+... ....+++...++.+++. ++.+++ ....++.++.--++|+
T Consensus 19 ~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi--DT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 19 FLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV--DTYRAEVARAALEAGA 96 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE--eCCCHHHHHHHHHcCC
Confidence 3689999999999999999888775432222211 12345688888888754 666543 3355677776666777
Q ss_pred Ceee
Q 016605 196 TAYN 199 (386)
Q Consensus 196 ~~v~ 199 (386)
+.|+
T Consensus 97 ~iIN 100 (257)
T TIGR01496 97 DIIN 100 (257)
T ss_pred CEEE
Confidence 7665
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.64 E-value=8.4 Score=35.63 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh-------------hhHHHHHHHHHHHhhc--CcEE-EE--ecCCC-
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRDM--GMEV-CC--TLGML- 182 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~-------------~~~~~l~~~i~~ik~~--g~~i-~~--t~g~l- 182 (386)
+.+.-.+.++.+.+.|++-+-++--..+|. ..| ...+.+++.++.+++. .+++ .. .|-..
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 567777778888888998777753221221 111 2236788889998843 4442 11 12211
Q ss_pred --CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 183 --EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 183 --~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.++.++.++++|++.+.+.-. .+++..+.++.+++.|+... +++...-+.+.+...++...
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl-------------p~ee~~~~~~~~~~~gl~~i--~lv~P~T~~eri~~i~~~~~-- 164 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL-------------PLEESGDLVEAAKKHGVKPI--FLVAPNADDERLKQIAEKSQ-- 164 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC-------------ChHHHHHHHHHHHHCCCcEE--EEECCCCCHHHHHHHHHhCC--
Confidence 267899999999999887422 34556677888899998643 33333444555555554332
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCccccccCCcc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~~~g~~~ 338 (386)
..+.+.......|.. ... ..+....+...|...+.. +-+. .++. ++.......+||+.++.|..+
T Consensus 165 ----gfiy~vs~~G~TG~~----~~~-~~~~~~~i~~lr~~~~~p-i~vg---fGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 165 ----GFVYLVSRAGVTGAR----NRA-ASALNELVKRLKAYSAKP-VLVG---FGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred ----CCEEEEECCCCCCCc----ccC-ChhHHHHHHHHHhhcCCC-EEEe---CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 133333322222221 111 122455566666554331 2222 2333 444456778999999888743
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=92.50 E-value=4.2 Score=36.26 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++|++...+..+...|.+.+++..+... +.+.. .++++.+++ .++++.+-.|..+.+.++.+.++|+|.+-
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa--~~~v~----~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGA--SYPVN----PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCCC----HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 379999999999988899999988543211 11222 455555553 36778888899999999999999999886
Q ss_pred cc
Q 016605 200 HN 201 (386)
Q Consensus 200 i~ 201 (386)
++
T Consensus 204 VG 205 (205)
T TIGR01769 204 TG 205 (205)
T ss_pred eC
Confidence 54
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.1 Score=40.64 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+...+ ...++++ ||+.. ....+.+.+.++.+++.|+.++.-.. -+.+.++.-++.
T Consensus 73 t~e~~~ia~~~k---P~~vtLVPE~r~e~TTegGldv----~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~ 144 (239)
T PF03740_consen 73 TEEMVDIALKVK---PDQVTLVPEKREELTTEGGLDV----AGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKEL 144 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-T----CGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHT
T ss_pred CHHHHHHHHhCC---cCEEEECCCCCCCcCCCcCChh----hcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHc
Confidence 367777766654 3567775 22211 13468999999999999998654332 258999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCC--HHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRS--YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s--~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
|+++|-+.-..+.+.+..-..... +++..++.+.+++.|+.|++ |+|-+.+.+..+
T Consensus 145 Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnA----GHgL~y~N~~~i 202 (239)
T PF03740_consen 145 GADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVNA----GHGLNYDNVRPI 202 (239)
T ss_dssp T-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEE----ETT--TTTHHHH
T ss_pred CCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHHHHHH
Confidence 999998755444222211000111 46777888889999998877 566665554443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.5 Score=39.83 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 207 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~ 207 (386)
.+.++...+.|++.++++-=..-..|.+.+.+.+.++++. ...++.+--|..+.+.++.|.++|++++.++--+.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~---~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av-- 108 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEA---TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV-- 108 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHh---CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee--
Confidence 4445566778999888752111112344454444444443 35567778899999999999999999999875443
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--Eee----cC---CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 208 FYSKIITTRSYDERLETLKHVREAGINVCSGG--IIG----LG---EAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 208 ~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--i~G----lg---et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
++++... +.+++.|-++...+ =-| -| .+.-++.++++.+.+.+ ...+-+.- +-..||
T Consensus 109 --------~~p~~v~---~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g--~~~ii~Td-I~~DGt 174 (241)
T COG0106 109 --------KNPDLVK---ELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG--LAHILYTD-ISRDGT 174 (241)
T ss_pred --------cCHHHHH---HHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcC--CCeEEEEe-cccccc
Confidence 2343333 33445553322221 111 12 13335667777777775 44443333 233455
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
- ..+..+-+.++.... +..+..++|--++..-.....+. |+.+++.|..+. ....+..|.++..+
T Consensus 175 l----~G~n~~l~~~l~~~~-----~ipviaSGGv~s~~Di~~l~~~~-G~~GvIvG~ALy-~g~~~l~ea~~~~~ 239 (241)
T COG0106 175 L----SGPNVDLVKELAEAV-----DIPVIASGGVSSLDDIKALKELS-GVEGVIVGRALY-EGKFTLEEALACVR 239 (241)
T ss_pred c----CCCCHHHHHHHHHHh-----CcCEEEecCcCCHHHHHHHHhcC-CCcEEEEehHHh-cCCCCHHHHHHHHh
Confidence 3 233444444443333 22233444433332211112222 888888886332 34445666555443
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=92.24 E-value=9.9 Score=35.50 Aligned_cols=223 Identities=18% Similarity=0.169 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccC-CCCCCh-hhHHHHHHHHHHHhhc--CcEEEEecCC---CC-HHHHHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-DTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM---LE-KHQAIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~-~~~ge~-~~~~~l~~~i~~ik~~--g~~i~~t~g~---l~-~e~l~~Lk~a 193 (386)
.++|||.+.+.+..+.|..-+++=. + +..|.+ ...+.+.++++.+++. ++-+..|.|. .+ ++.++.+...
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~--R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHA--RDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-E--E-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeec--CCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 7999999999999999998888743 3 333444 5668888888988854 5556555443 22 4455555544
Q ss_pred ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 194 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 194 G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
..+..++++-+. -...+. --.++++...+.++.+++.|+.....+ | +..++.....++++ |.-...+.+..+
T Consensus 101 ~pd~asl~~gs~n~~~~~~-~~~n~~~~~~~~~~~~~e~Gi~pe~ev-~----d~~~l~~~~~l~~~-G~l~~p~~~~~v 173 (272)
T PF05853_consen 101 KPDMASLNPGSMNFGTRDR-VYINTPADARELARRMRERGIKPEIEV-F----DPGHLRNARRLIEK-GLLPGPLLVNFV 173 (272)
T ss_dssp --SEEEEE-S-EEESGGCS-EE---HHHHHHHHHHHHHTT-EEEEEE-S----SHHHHHHHHHHHHT-TSS-SSEEEEEE
T ss_pred CCCeEEecccccccccCCc-eecCCHHHHHHHHHHHHHcCCeEEEEE-E----cHHHHHHHHHHHHC-CCCCCCeEEEEc
Confidence 566666655443 110000 013468888899999999999877633 2 45566655555543 421122333322
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCccccc-cCCccccCCC-------
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF-TGEKLLTTPN------- 343 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~~-~g~~~~t~~~------- 343 (386)
. |.+ .. .+.+++.+..++..... +....+.+ |+.. -.....++..|.+.=+ .++.+...++
T Consensus 174 l---G~~-~g-~~~~~~~l~~~l~~l~~---~~~w~v~~~g~~~--~~~~~~Ai~~GghvRVGlED~~~~~~G~~a~sNa 243 (272)
T PF05853_consen 174 L---GVP-GG-MPATPENLLAMLDMLPE---GAPWSVCGIGRNQ--WPLLAAAIAMGGHVRVGLEDNLYLPDGELAPSNA 243 (272)
T ss_dssp E---S-T-TS---S-HHHHHHHHHHHHH---TEEEEEEE-GGGH--HHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HH
T ss_pred c---cCC-CC-CCCCHHHHHHHHHhcCC---CCcEEEEccchhh--HHHHHHHHHcCCceEEecCccccCCCCCCCcCHH
Confidence 2 333 22 25577777766655544 32222221 1111 1234556666766321 1222211221
Q ss_pred CChhHHHHHHHHcCCCcCCC
Q 016605 344 NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 344 ~~~~~~~~~i~~~G~~p~~~ 363 (386)
--++...++++++|+.|...
T Consensus 244 elV~~a~~ia~~~grevAt~ 263 (272)
T PF05853_consen 244 ELVERAVRIARELGREVATP 263 (272)
T ss_dssp HHHHHHHHHHHHTT-EB--H
T ss_pred HHHHHHHHHHHHcCCCCCCH
Confidence 13456688899999988653
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=2 Score=38.98 Aligned_cols=116 Identities=10% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+... ....++++ ||+.. ....+.+.+.++.+++.|+.++.=.. -+.+.++.-++.
T Consensus 75 ~~em~~ia~~~---kP~~vtLVPE~r~E~TTegGldv----~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~ 146 (239)
T PRK05265 75 TEEMLDIALEV---KPHQVTLVPEKREELTTEGGLDV----AGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEV 146 (239)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh----hcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 35666665544 34567765 22211 13568899999999999988643322 468999999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 252 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 252 (386)
|.++|-+.-..+.+.+.. .....++....+.+.+++.|+.|++ |+|-|.+.+..
T Consensus 147 GAd~VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~VnA----GHgLny~Nv~~ 200 (239)
T PRK05265 147 GADRIELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVNA----GHGLNYHNVKP 200 (239)
T ss_pred CcCEEEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHhHHH
Confidence 999998765554221111 1122467777788888889988776 68888877766
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=7.5 Score=35.36 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.++.++.+.+.|++.+++..-... ........+.++.+. ..++++.+..|..+.+.++.+.++|++.+.++-...
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~----~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGA----FEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhh----hcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 444555666789988877532111 112233444555554 457788888888899999999999999998865443
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.91 E-value=10 Score=35.07 Aligned_cols=173 Identities=20% Similarity=0.194 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
++.+.++.+.+.|+..+.+.+......|. ++.++.+++ ..+++....-..++.++...+++|.|.+.+....
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~-------~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGS-------LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCC-------HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 44566677777898888665422222221 344555553 4677766555678889999999999999985543
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
+ +.++..+.++.+++.|+.+-+.+ .|.+|+.. +.+++ ++.++++... +...
T Consensus 144 l-----------~~~~l~~li~~a~~lGl~~lvev-----h~~~E~~~----A~~~g--adiIgin~rd------l~~~- 194 (260)
T PRK00278 144 L-----------DDEQLKELLDYAHSLGLDVLVEV-----HDEEELER----ALKLG--APLIGINNRN------LKTF- 194 (260)
T ss_pred C-----------CHHHHHHHHHHHHHcCCeEEEEe-----CCHHHHHH----HHHcC--CCEEEECCCC------cccc-
Confidence 2 22455567788888887633222 25566533 44665 7777765321 1111
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 285 PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 285 ~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
.++.+... .+.+ .+|+....++-|-+. .++.....+.+||+.+..|..+.
T Consensus 195 ~~d~~~~~---~l~~-~~p~~~~vIaegGI~-t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 195 EVDLETTE---RLAP-LIPSDRLVVSESGIF-TPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred cCCHHHHH---HHHH-hCCCCCEEEEEeCCC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 22333322 2223 345422333322121 23444567788999998887444
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=91.71 E-value=9.8 Score=34.32 Aligned_cols=185 Identities=17% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+++..-.....+.+. -.++++.+++ .++++.+..|..+.+.++.+.++|++.+.++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~----~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPV----NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCC----CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 4455666677789999888632111111222 2445555553 4678888888899999999999999998876544
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----Ee--ec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----II--GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~----i~--Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
.. +++...+..+...+.-+-+..++ ++ |. ..+..+..+.++.+.+.+ ++.+.++.... .|
T Consensus 106 l~----------dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--a~~iii~~~~~-~g 172 (234)
T cd04732 106 VK----------NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG--VKAIIYTDISR-DG 172 (234)
T ss_pred Hh----------ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC--CCEEEEEeecC-CC
Confidence 31 12222222222211111122221 11 11 123445667777777775 66666654322 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+. ..+..+.+.+ .+...+- .+-..+|-.+. .+ -...+..||+.++.|..+
T Consensus 173 ~~----~g~~~~~i~~----i~~~~~i-pvi~~GGi~~~-~d-i~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 173 TL----SGPNFELYKE----LAAATGI-PVIASGGVSSL-DD-IKALKELGVAGVIVGKAL 222 (234)
T ss_pred cc----CCCCHHHHHH----HHHhcCC-CEEEecCCCCH-HH-HHHHHHCCCCEEEEeHHH
Confidence 32 1223332222 2222221 12222221221 22 245566799999888643
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=91.67 E-value=11 Score=34.63 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec-ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 158 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH-NLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i-~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
.+++.++.+..++.|+....|+ .+.+.++.|.+.|+..+-+ |-|.. .+.-++.+.+.|.+
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stp--fd~~s~d~l~~~~~~~~KIaS~dl~---------------n~~lL~~~A~tgkP-- 115 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTP--FDEESVDFLEELGVPAYKIASGDLT---------------NLPLLEYIAKTGKP-- 115 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE---SHHHHHHHHHHT-SEEEE-GGGTT----------------HHHHHHHHTT-S---
T ss_pred HHHHHHHHHHHHHcCCEEEECC--CCHHHHHHHHHcCCCEEEecccccc---------------CHHHHHHHHHhCCc--
Confidence 4667777778888899877765 4789999999999888876 22221 12445666667776
Q ss_pred EeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccc
Q 016605 237 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVR 315 (386)
Q Consensus 237 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~ 315 (386)
+|+.. .-+.+|+.+.++.+++-+ +.+.+-++...-+| .+..+--++.+...+..++ ..+..+. =+
T Consensus 116 --vIlSTG~stl~EI~~Av~~~~~~~-~~~l~llHC~s~YP--------~~~e~~NL~~i~~L~~~f~-~~vG~SD--Ht 181 (241)
T PF03102_consen 116 --VILSTGMSTLEEIERAVEVLREAG-NEDLVLLHCVSSYP--------TPPEDVNLRVIPTLKERFG-VPVGYSD--HT 181 (241)
T ss_dssp --EEEE-TT--HHHHHHHHHHHHHHC-T--EEEEEE-SSSS----------GGG--TTHHHHHHHHST-SEEEEEE---S
T ss_pred --EEEECCCCCHHHHHHHHHHHHhcC-CCCEEEEecCCCCC--------CChHHcChHHHHHHHHhcC-CCEEeCC--CC
Confidence 44445 458899999999995554 34444444432222 2223333566777777777 3343331 12
Q ss_pred cChhHHHhhhhcCcccc---ccCC----ccccCCCCChhHHHHHHHH
Q 016605 316 FSMPEQALCFLAGANSI---FTGE----KLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 316 ~~~~~~~~~l~~Gan~~---~~g~----~~~t~~~~~~~~~~~~i~~ 355 (386)
.+......++..||..| ++=+ ........++++..+|++.
T Consensus 182 ~g~~~~~~AvalGA~vIEKHfTldr~~~g~Dh~~Sl~p~el~~lv~~ 228 (241)
T PF03102_consen 182 DGIEAPIAAVALGARVIEKHFTLDRNLKGPDHKFSLEPDELKQLVRD 228 (241)
T ss_dssp SSSHHHHHHHHTT-SEEEEEB-S-TTSCSTTGCCCB-HHHHHHHHHH
T ss_pred CCcHHHHHHHHcCCeEEEEEEECCCCCCCCChhhcCCHHHHHHHHHH
Confidence 23344567778899987 3221 1223445688888888765
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.59 E-value=10 Score=34.92 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhH----HHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF----NQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~----~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
+.|.|...++..+..|++- ..+|...| --.|..| +.=++++++++ +.|+.+.+. .++.+.++...++ +|.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~-lRGgafKP-RTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtE--vm~~~~~e~~~~y-~Di 131 (286)
T COG2876 57 SEEQVRETAESVKAAGAKA-LRGGAFKP-RTSPYSFQGLGEEGLKLLKRAADETGLPVVTE--VMDVRDVEAAAEY-ADI 131 (286)
T ss_pred CHHHHHHHHHHHHHcchhh-ccCCcCCC-CCCcccccccCHHHHHHHHHHHHHcCCeeEEE--ecCHHHHHHHHhh-hhH
Confidence 5789999999999888753 33333222 1223222 45566666666 568876543 3678888888887 777
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee-EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC-SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~-~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+.++.-- ++.+..++++|-.-. +-+-=|++.|.+|+....+++..-| +...|-.- .
T Consensus 132 lqvGARN-----------------MQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~G-N~~vILCE-----R 188 (286)
T COG2876 132 LQVGARN-----------------MQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHG-NGNVILCE-----R 188 (286)
T ss_pred HHhcccc-----------------hhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCC-CCcEEEEe-----c
Confidence 7765311 244456666663211 1122367889999999999998887 43322211 1
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHHhCC-Ccceeec--CcccccChhHHHhhhhcCccccccC---C--ccc--cCCCCC
Q 016605 277 GTP-LQDQKPVEIWEMIRMIATARIVMP-KAMVRLS--AGRVRFSMPEQALCFLAGANSIFTG---E--KLL--TTPNND 345 (386)
Q Consensus 277 gT~-l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~--~g~~~~~~~~~~~~l~~Gan~~~~g---~--~~~--t~~~~~ 345 (386)
|-. ++...+.+.+ +..+.++|.... ..++..+ +|+-.+-......++.+||+.++.+ + .-+ .....+
T Consensus 189 GIRtfe~~TRntLD--i~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~ 266 (286)
T COG2876 189 GIRTFEKATRNTLD--ISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLT 266 (286)
T ss_pred ccccccccccceec--hHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCC
Confidence 211 1111111111 233445554432 1233333 4444555677788999999999643 1 111 123356
Q ss_pred hhHHHHHHHH
Q 016605 346 FDADQLMFKV 355 (386)
Q Consensus 346 ~~~~~~~i~~ 355 (386)
+++..++.++
T Consensus 267 ~~~f~~l~~~ 276 (286)
T COG2876 267 PEEFEELVKE 276 (286)
T ss_pred HHHHHHHHHH
Confidence 6666555554
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.52 E-value=12 Score=34.81 Aligned_cols=187 Identities=17% Similarity=0.182 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
.+.+.+++.+++..+.|..-+-+.++. . + ....+.+...++.+++. ++++++ .....+.++.--++ |.+-|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~-~--~-~eE~~r~~~~v~~l~~~~~~plsI--DT~~~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGT-A--V-EEEPETMEWLVETVQEVVDVPLCI--DSPNPAAIEAGLKVAKGPPLI 95 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-C--c-hhHHHHHHHHHHHHHHhCCCCEEE--eCCCHHHHHHHHHhCCCCCEE
Confidence 678999999999999999877676542 1 1 23456778888877643 555543 44567777777666 76655
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHHH----HHHHHHHhcCCCCCCeEeeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDR----VGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~----~~~l~~l~~l~~~~~~v~~~~ 271 (386)
+ ++.+. ...+ +.+..++++|..+..-.+ -|...|.++. .+.++.+.+.|...+.+.+-+
T Consensus 96 NsIs~~~-----------~~~~---~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDP 161 (261)
T PRK07535 96 NSVSAEG-----------EKLE---VVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDP 161 (261)
T ss_pred EeCCCCC-----------ccCH---HHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeC
Confidence 4 22111 1122 345667788877554333 3444455443 444555666653223444433
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC--------hhHHHhhhhcCccccc
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS--------MPEQALCFLAGANSIF 333 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~--------~~~~~~~l~~Gan~~~ 333 (386)
.+ ++ +.. ..-...+.++.+...+..+|...+-+..++.+++ .-.-.++..+|.+.-+
T Consensus 162 gi---~~-~~~-~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI 226 (261)
T PRK07535 162 LV---LP-LSA-AQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAI 226 (261)
T ss_pred CC---Cc-ccC-ChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEe
Confidence 22 11 211 1112445566777777777643332222223222 2233455666766654
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=91.18 E-value=8.5 Score=35.59 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----ChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g----e~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.+++++.+....+.|.+-+-+.++...++. .....+.+...++.+++. ++.+ +....+.+.++.--++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi--SIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI--SVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCcHHHHHHHHHhCCC
Confidence 68999999999999999988777665443322 224456788888888754 5554 3455678888888888866
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 99 iIN 101 (258)
T cd00423 99 IIN 101 (258)
T ss_pred EEE
Confidence 555
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.2 Score=43.20 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-hhhHHHHHHHHHHHhhcCcEEEEe--cCC-----CCHHHHHHHHHhc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge-~~~~~~l~~~i~~ik~~g~~i~~t--~g~-----l~~e~l~~Lk~aG 194 (386)
+.++..+.++.+.+.|++.++.+- +.+... ....+.+.++++.+++.|+++.+. +.. .+.+.++.|++.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL--~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL--HIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC--CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 688999999999999998876532 222222 245678888889999999996543 322 2344578899999
Q ss_pred cCeeecc
Q 016605 195 LTAYNHN 201 (386)
Q Consensus 195 ~~~v~i~ 201 (386)
++.+-+.
T Consensus 90 i~~lRlD 96 (357)
T PF05913_consen 90 IDGLRLD 96 (357)
T ss_dssp -SEEEES
T ss_pred CCEEEEC
Confidence 9888763
|
The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=91.09 E-value=11 Score=33.95 Aligned_cols=132 Identities=15% Similarity=0.104 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++.--...-.+.+.++ ++++.+. ..++++....|..+.+.++.+.++|++.+-++-..
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 334455566678999887753222111222333 3444443 34677888889999999999999999998877433
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee---------c-C---CCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG---------L-G---EAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G---------l-g---et~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
. .+++...+..+...+..+.+..++--+ . + ++..+..+.++.+.+.+ ++.+.++.
T Consensus 107 l----------~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~i~~ 174 (232)
T TIGR03572 107 L----------ENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLG--AGEILLNS 174 (232)
T ss_pred h----------cCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcC--CCEEEEeC
Confidence 2 112222222222211113333333221 1 1 12344567777777776 67777766
Q ss_pred ee
Q 016605 272 LL 273 (386)
Q Consensus 272 f~ 273 (386)
+.
T Consensus 175 i~ 176 (232)
T TIGR03572 175 ID 176 (232)
T ss_pred CC
Confidence 43
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=91.00 E-value=12 Score=34.03 Aligned_cols=184 Identities=12% Similarity=0.111 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHH---hccCeeecccC
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKK---AGLTAYNHNLD 203 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~---aG~~~v~i~le 203 (386)
-.+..+.+.+.|-++|.+-. ....+++-+.+..+++ ...+.++.+..+.+.+..+.+ .+++.+.++.-
T Consensus 31 t~~a~~~~~~rgr~ef~~~~--------e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~g 101 (231)
T TIGR00736 31 TYKASRDIEKRGRKEFSFNL--------EEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAH 101 (231)
T ss_pred HHHHHHHHHHcCCcccCcCc--------ccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECC
Confidence 34455667778877763211 1244567777777763 336677777766555544432 36777777665
Q ss_pred ch-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 204 TS-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 204 ~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
-. +++.+.=.+ .++++...+.++.+++.+++|.+-+=.|. +.++..++.+.+.+.| .+.+.+....| |.+
T Consensus 102 CP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~aG--ad~i~Vd~~~~--g~~ 175 (231)
T TIGR00736 102 CRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDDG--FDGIHVDAMYP--GKP 175 (231)
T ss_pred CCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHcC--CCEEEEeeCCC--CCc
Confidence 44 333322111 24778888888888877877776666543 4456778888888886 77887765433 221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. . . ++.+...+..+++ +.-+..|-+. ..+.....+..||+.++.+.
T Consensus 176 ~-----a-~---~~~I~~i~~~~~~-ipIIgNGgI~-s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 176 Y-----A-D---MDLLKILSEEFND-KIIIGNNSID-DIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred h-----h-h---HHHHHHHHHhcCC-CcEEEECCcC-CHHHHHHHHHhCCCeEEEcH
Confidence 1 1 1 3334444444432 1122222221 22334566778999998775
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=90.90 E-value=11 Score=33.60 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec-
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH- 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i- 200 (386)
.+.+.|.+.++.+..-|.+.+-+-. + .++.+.++.+ .++++|++. ++++.+-.-.++|.|.+-+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-------d----p~LV~~~~~~--s~lPICVSa--Vep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-------D----PELVKLAKSL--SNLPICVSA--VEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-------C----HHHHHHHHHh--CCCCeEeec--CCHHHHHHHHHhCCCEEEec
Confidence 5678888888887777777665532 1 3444444433 378888874 6788888888999999998
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
+.|++ |.. .+.-+.+++++.-+..++. .+.+++++.. --..++-..+...+.++| .|.+. -..||
T Consensus 89 NfDsF---Y~q-Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH--iL~ld~Qv~LA~~L~~~G--aDiIQ-----TEGgt 155 (242)
T PF04481_consen 89 NFDSF---YAQ-GRRFSAEEVLALTRETRSLLPDITLSVTVPH--ILPLDQQVQLAEDLVKAG--ADIIQ-----TEGGT 155 (242)
T ss_pred chHHH---Hhc-CCeecHHHHHHHHHHHHHhCCCCceEEecCc--cccHHHHHHHHHHHHHhC--CcEEE-----cCCCC
Confidence 56665 322 2345788999888888876 3444444443 335667788888888886 44332 23344
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHHhCCCccee-ecCcccccChhHHHhhhhcCccccccC
Q 016605 279 PLQDQKPVEI---WEMIRMIATARIVMPKAMVR-LSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 279 ~l~~~~~~s~---~e~~~~~a~~R~~lp~~~i~-i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
.-....+... +...-.++.+..+.....++ +++. ++..-...+++.+||..+=.|
T Consensus 156 ss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcAS--GlS~vT~PmAiaaGAsGVGVG 214 (242)
T PF04481_consen 156 SSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCAS--GLSAVTAPMAIAAGASGVGVG 214 (242)
T ss_pred CCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEecc--CcchhhHHHHHHcCCcccchh
Confidence 3222111111 11111233333332222222 2321 233334577999999998334
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=90.85 E-value=11 Score=33.27 Aligned_cols=184 Identities=10% Similarity=0.089 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEe-cCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCT-LGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t-~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++.+.+.++.+.+.|++.+.+.-.+.+... ....-.+.++.+++. ...+.+. ...-..+.++.++++|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 45678888888999999999988511111111 122345566666542 3332111 111246778999999999987
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+..+. .+...+.++.+++.|+.+.. .+.. .+..+.. +.+... ++.+.+..+.| |+.
T Consensus 85 vh~~~-------------~~~~~~~~~~~~~~g~~~~~--~~~~-~t~~e~~---~~~~~~---~d~i~~~~~~~--g~t 140 (210)
T TIGR01163 85 VHPEA-------------SEHIHRLLQLIKDLGAKAGI--VLNP-ATPLEFL---EYVLPD---VDLVLLMSVNP--GFG 140 (210)
T ss_pred EccCC-------------chhHHHHHHHHHHcCCcEEE--EECC-CCCHHHH---HHHHhh---CCEEEEEEEcC--CCC
Confidence 74322 13334566778888876533 2222 2333322 222222 45555554433 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
-.. ..+.. ++.+...+.+.++ ..+-+.+ +++++.-...+..||+.++.|..+.
T Consensus 141 g~~---~~~~~-~~~i~~i~~~~~~~~~~~~i~v~G---GI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 141 GQK---FIPDT-LEKIREVRKMIDENGLSILIEVDG---GVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred ccc---ccHHH-HHHHHHHHHHHHhcCCCceEEEEC---CcCHHHHHHHHHcCCCEEEEChHHh
Confidence 111 11221 2233333333322 1122222 3344444456789999998886443
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=90.63 E-value=5.2 Score=36.94 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|+..+.+.+. +..|.--++.+..++ ...+++....-.+++.++.+-+.+|.|.|.+-+..
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe-------~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTE-------PKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE---------SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred CHHHHHHHHHhcCCCEEEEECC-------CCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 3344556777789988877652 223333344444455 34677777777889999999999999999986666
Q ss_pred h-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCC
Q 016605 205 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 283 (386)
Q Consensus 205 ~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~ 283 (386)
+ ++ +..+-++.++..|+.+-+- -.|.+|+...+ ..+ ++.++++.... .| +
T Consensus 142 L~~~------------~l~~l~~~a~~lGle~lVE-----Vh~~~El~~al----~~~--a~iiGINnRdL--~t-f--- 192 (254)
T PF00218_consen 142 LSDD------------QLEELLELAHSLGLEALVE-----VHNEEELERAL----EAG--ADIIGINNRDL--KT-F--- 192 (254)
T ss_dssp SGHH------------HHHHHHHHHHHTT-EEEEE-----ESSHHHHHHHH----HTT---SEEEEESBCT--TT-C---
T ss_pred CCHH------------HHHHHHHHHHHcCCCeEEE-----ECCHHHHHHHH----HcC--CCEEEEeCccc--cC-c---
Confidence 5 33 2345668889999873221 13667765544 454 77888886432 11 1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 284 KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 284 ~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
..+.....+ ..-.+|+..+.++-+-+. .++.......+|++.++.|+.+..+
T Consensus 193 -~vd~~~~~~----l~~~ip~~~~~iseSGI~-~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 193 -EVDLNRTEE----LAPLIPKDVIVISESGIK-TPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp -CBHTHHHHH----HHCHSHTTSEEEEESS-S-SHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred -ccChHHHHH----HHhhCccceeEEeecCCC-CHHHHHHHHHCCCCEEEECHHHhCC
Confidence 122222222 223455544555432122 1333345567899999999866544
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.55 E-value=5.9 Score=33.05 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-EE-EecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i~-~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++|+.+.+ .+..+.-+.+++- .| ...+.+.++++.+++.|.+ +. +--|.+.++.++.|+++|++.+.
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl----~g--~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL----DG--GHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec----cc--hHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 5888888765 3455555555431 12 2345677777788888776 44 45677889999999999999887
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
.
T Consensus 121 ~ 121 (143)
T COG2185 121 G 121 (143)
T ss_pred C
Confidence 4
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=90.52 E-value=14 Score=33.87 Aligned_cols=184 Identities=16% Similarity=0.188 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChhh-------------HHHHHHHHHHHhhc-CcEEEE--e-cCCC--
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTN-------------FNQILEYVKDIRDM-GMEVCC--T-LGML-- 182 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~~-------------~~~l~~~i~~ik~~-g~~i~~--t-~g~l-- 182 (386)
+.+...+.++.+.+.|++.+.+.--..++. ..+.. .+..++.++.+++. .+++.. . +-..
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 568888889999999999888752111111 11211 13678888888853 444322 2 1111
Q ss_pred -CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 183 -EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 183 -~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
.++.++.++++|++.+.+. .-.+++..+.++.++++|+.... ++...-+.+.+...+...
T Consensus 92 G~~~fi~~~~~aG~~giiip-------------Dl~~ee~~~~~~~~~~~g~~~i~--~i~P~T~~~~i~~i~~~~---- 152 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIP-------------DLPPEEAEEFREAAKEYGLDLIF--LVAPTTPDERIKKIAELA---- 152 (242)
T ss_pred CHHHHHHHHHHCCCcEEEEC-------------CCCHHHHHHHHHHHHHcCCcEEE--EeCCCCCHHHHHHHHhhC----
Confidence 2778999999999988872 11245666778889999986443 222233334444333222
Q ss_pred CCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCccccccCCc
Q 016605 262 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 262 ~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~~~g~~ 337 (386)
.+.+-+....|.-|.. .... ....+.+...|... +.-+-+.. +.. ++.......+ |+.++.|..
T Consensus 153 --~~~vy~~s~~g~tG~~--~~~~---~~~~~~i~~lr~~~-~~pI~vgg---GI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 153 --SGFIYYVSRTGVTGAR--TELP---DDLKELIKRIRKYT-DLPIAVGF---GISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred --CCCEEEEeCCCCCCCc--cCCC---hhHHHHHHHHHhcC-CCcEEEEc---cCCCHHHHHHHHcc-CCEEEECHH
Confidence 3445444444433321 1111 23344455555442 32232322 222 2223445556 998888863
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.52 E-value=9.8 Score=35.01 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.++.+ .++.+.+.|...+.+.+. |.+|.-=++.++.++ ...+++..-...+++.++..-+.+|.|.|.+
T Consensus 66 ~dp~~---ia~~Ye~~GAa~iSVLTd-------~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLL 135 (254)
T COG0134 66 FDPVE---IAKAYEEGGAAAISVLTD-------PKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 135 (254)
T ss_pred CCHHH---HHHHHHHhCCeEEEEecC-------ccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHH
Confidence 45555 445556678877766552 233333334445565 4577887777789999999999999999887
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
=+..+ +-++..+-.+.+++.|+.+=+- -.+.+|+...++ ++ ...|+++.-. +
T Consensus 136 I~~~L-----------~~~~l~el~~~A~~LGm~~LVE-----Vh~~eEl~rAl~----~g--a~iIGINnRd------L 187 (254)
T COG0134 136 IVAAL-----------DDEQLEELVDRAHELGMEVLVE-----VHNEEELERALK----LG--AKIIGINNRD------L 187 (254)
T ss_pred HHHhc-----------CHHHHHHHHHHHHHcCCeeEEE-----ECCHHHHHHHHh----CC--CCEEEEeCCC------c
Confidence 55444 2223445667889999873221 135566555443 54 6778887632 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP 342 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 342 (386)
... ..+.+. .....-++|+..+.++-+-+. +++.-......|+|.++.|+.+..+.
T Consensus 188 ~tf-~vdl~~----t~~la~~~p~~~~~IsESGI~-~~~dv~~l~~~ga~a~LVG~slM~~~ 243 (254)
T COG0134 188 TTL-EVDLET----TEKLAPLIPKDVILISESGIS-TPEDVRRLAKAGADAFLVGEALMRAD 243 (254)
T ss_pred chh-eecHHH----HHHHHhhCCCCcEEEecCCCC-CHHHHHHHHHcCCCEEEecHHHhcCC
Confidence 111 112222 222333556544444421121 23334556678999999998665443
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=90.49 E-value=10 Score=34.49 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC---------CCHHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM---------LEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~---------l~~e~l~~Lk~ 192 (386)
+++..+.+.++.+... ++-+-+.+|.... ..-+.+.+.++..++.++.+++- |+ .-++.++..++
T Consensus 9 l~~~~~~d~Le~~g~y-ID~lKfg~Gt~~l----~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~ 82 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDY-ITFVKFGWGTSAL----IDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDE 82 (237)
T ss_pred CCHHHHHHHHHHhhhh-eeeEEecCceEee----ccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHH
Confidence 4555555555544332 4555555443211 11234777777778878776543 32 24667778899
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-------CCCHHHHHHHHHHHhcCCCCCC
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-------GEAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-------get~ed~~~~l~~l~~l~~~~~ 265 (386)
.|++.|-+|--+. .-+.+++.+.|+.+++.|+.+-.- +|. -.+.+++.+.++..-+.| .+
T Consensus 83 lGf~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAG--A~ 149 (237)
T TIGR03849 83 LGFEAVEISDGSM---------EISLEERCNLIERAKDNGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAG--AD 149 (237)
T ss_pred cCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCC--Cc
Confidence 9999998865332 236788889999999999875433 222 135567777776666665 55
Q ss_pred eEeeee
Q 016605 266 SVPINA 271 (386)
Q Consensus 266 ~v~~~~ 271 (386)
.|.+-.
T Consensus 150 ~ViiEa 155 (237)
T TIGR03849 150 YVIIEG 155 (237)
T ss_pred EEEEee
Confidence 655543
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=14 Score=33.73 Aligned_cols=201 Identities=10% Similarity=0.057 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC-CCChhhH---HHHH-----HHHHHHhh-cCcEEEE----ecCCCC-HHHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNF---NQIL-----EYVKDIRD-MGMEVCC----TLGMLE-KHQA 187 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-~ge~~~~---~~l~-----~~i~~ik~-~g~~i~~----t~g~l~-~e~l 187 (386)
+.++..+.++.+.+. ++-+-+.-...++ .+.|..- ...+ +.++.+++ ..+++.. ++...+ .+.+
T Consensus 16 ~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i 94 (244)
T PRK13125 16 NVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFL 94 (244)
T ss_pred CHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHH
Confidence 678888887777665 7666553222222 1122211 2333 57777774 3445321 232223 4558
Q ss_pred HHHHHhccCeeecc---cCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCC
Q 016605 188 IELKKAGLTAYNHN---LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 188 ~~Lk~aG~~~v~i~---le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~ 264 (386)
+.++++|++.+.+- +|+ .++..+.++.+++.|+.... .+....+.+.+...+....
T Consensus 95 ~~~~~~Gadgvii~dlp~e~-------------~~~~~~~~~~~~~~Gl~~~~--~v~p~T~~e~l~~~~~~~~------ 153 (244)
T PRK13125 95 NMARDVGADGVLFPDLLIDY-------------PDDLEKYVEIIKNKGLKPVF--FTSPKFPDLLIHRLSKLSP------ 153 (244)
T ss_pred HHHHHcCCCEEEECCCCCCc-------------HHHHHHHHHHHHHcCCCEEE--EECCCCCHHHHHHHHHhCC------
Confidence 99999999999873 232 34455777889999996533 3333444555555544322
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccccc-ChhHHHhhhhcCccccccCCccccC-C
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF-SMPEQALCFLAGANSIFTGEKLLTT-P 342 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~-~~~~~~~~l~~Gan~~~~g~~~~t~-~ 342 (386)
.+-+....| +|- .. . .....+.+...|.+.++..+-+.. ++ .++.......+|||.++.|..+... .
T Consensus 154 -~~l~msv~~--~~g-~~---~-~~~~~~~i~~lr~~~~~~~i~v~g---GI~~~e~i~~~~~~gaD~vvvGSai~~~~~ 222 (244)
T PRK13125 154 -LFIYYGLRP--ATG-VP---L-PVSVERNIKRVRNLVGNKYLVVGF---GLDSPEDARDALSAGADGVVVGTAFIEELE 222 (244)
T ss_pred -CEEEEEeCC--CCC-CC---c-hHHHHHHHHHHHHhcCCCCEEEeC---CcCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 222223333 442 11 1 334455667777776543333332 23 2333344568999999888754321 1
Q ss_pred CCChhHHHHHHHHc
Q 016605 343 NNDFDADQLMFKVL 356 (386)
Q Consensus 343 ~~~~~~~~~~i~~~ 356 (386)
..+.++..++++++
T Consensus 223 ~~~~~~~~~~~~~~ 236 (244)
T PRK13125 223 KNGVESALNLLKKI 236 (244)
T ss_pred hcCHHHHHHHHHHH
Confidence 12355666666543
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=90.24 E-value=7.5 Score=37.22 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEe--cccCCCCC----ChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhcc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMG--AAWRDTIG----RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~--~g~~~~~g----e~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
-+++++.+.++...+.|...|-+. ++...... .....+.+..+++.+++.|+.+.++.. ....++.+.++|+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G~ 194 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAGV 194 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCC
Confidence 468999999999999998877543 21111100 113457788888888888887665543 2345566667777
Q ss_pred Ceeecc
Q 016605 196 TAYNHN 201 (386)
Q Consensus 196 ~~v~i~ 201 (386)
+.+.+.
T Consensus 195 ~~i~H~ 200 (342)
T cd01299 195 DTIEHG 200 (342)
T ss_pred CEEeec
Confidence 766654
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.9 Score=36.34 Aligned_cols=161 Identities=11% Similarity=0.089 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
..+.++.++.++.+.+.|++.+-++-- . +..++.|+.+++..-++.+-.|+ ++.+.++...++|.+.+-
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~------t----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLR------T----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV 81 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCC------C----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 358999999999999999998866531 1 23445555555332245455554 799999999999987654
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
- |.-+. +.++.+++.|+.+-.+. -|..|+..-+ ++| .+.+.+++ ...
T Consensus 82 S-------------P~~~~----~vi~~a~~~~i~~iPG~-----~TptEi~~A~----~~G--a~~vK~FP-----a~~ 128 (201)
T PRK06015 82 S-------------PGTTQ----ELLAAANDSDVPLLPGA-----ATPSEVMALR----EEG--YTVLKFFP-----AEQ 128 (201)
T ss_pred C-------------CCCCH----HHHHHHHHcCCCEeCCC-----CCHHHHHHHH----HCC--CCEEEECC-----chh
Confidence 2 21121 56678899998644333 3677766554 444 45555433 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
+.. ...+...+-.+|+.-+- .+|-+ +.+.-...|.+|+.....|.
T Consensus 129 ~GG---------~~yikal~~plp~~~l~-ptGGV--~~~n~~~~l~ag~~~~~ggs 173 (201)
T PRK06015 129 AGG---------AAFLKALSSPLAGTFFC-PTGGI--SLKNARDYLSLPNVVCVGGS 173 (201)
T ss_pred hCC---------HHHHHHHHhhCCCCcEE-ecCCC--CHHHHHHHHhCCCeEEEEch
Confidence 211 13344556677764222 22223 33334566777776555554
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=90.04 E-value=16 Score=33.87 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh-------------hhHHHHHHHHHHHh-hc-CcEE-EEe--cC---
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIR-DM-GMEV-CCT--LG--- 180 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~-------------~~~~~l~~~i~~ik-~~-g~~i-~~t--~g--- 180 (386)
+.+.-.+.++.+.+.|++-+-++--..++. ..| ...+.++++++.++ +. .+++ ..+ |-
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 577888888888888988766653222221 111 23467888888888 32 4553 222 11
Q ss_pred CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 181 ~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.-.++.++.++++|++.+-+ +.-.+++.-+..+.+.+.|+..- .++- ..|.+++.+.+....
T Consensus 102 ~G~e~F~~~~~~aGvdGlIi-------------pDLP~ee~~~~~~~~~~~gl~~I--~lv~-p~t~~~Ri~~i~~~a-- 163 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLII-------------PDLPPEESEELREAAKKHGLDLI--PLVA-PTTPEERIKKIAKQA-- 163 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEE-------------TTSBGGGHHHHHHHHHHTT-EEE--EEEE-TTS-HHHHHHHHHH---
T ss_pred cchHHHHHHHHHcCCCEEEE-------------cCCChHHHHHHHHHHHHcCCeEE--EEEC-CCCCHHHHHHHHHhC--
Confidence 12467899999999998876 22233444455567788998522 2222 335555544443332
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
..++.+.......|.. . .-..++.+.+...|.... .++..| ++++...+...+..||+.++.|..+
T Consensus 164 ---~gFiY~vs~~GvTG~~----~-~~~~~l~~~i~~ik~~~~---~Pv~vG-FGI~~~e~~~~~~~~aDGvIVGSa~ 229 (259)
T PF00290_consen 164 ---SGFIYLVSRMGVTGSR----T-ELPDELKEFIKRIKKHTD---LPVAVG-FGISTPEQAKKLAAGADGVIVGSAF 229 (259)
T ss_dssp ---SSEEEEESSSSSSSTT----S-SCHHHHHHHHHHHHHTTS---S-EEEE-SSS-SHHHHHHHHTTSSEEEESHHH
T ss_pred ---CcEEEeeccCCCCCCc----c-cchHHHHHHHHHHHhhcC---cceEEe-cCCCCHHHHHHHHccCCEEEECHHH
Confidence 2233333332222322 1 224566777788887662 233332 3344445666777999999999744
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor | Back alignment and domain information |
|---|
Probab=89.95 E-value=2.3 Score=41.49 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHH
Q 016605 216 RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI 295 (386)
Q Consensus 216 ~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~ 295 (386)
.+.++..+..+.+++.|-.+..-+-+ |+..+|+..-+....+++ ++ .|+ ..|-||.. ..-..+.+.+.+
T Consensus 203 ApldE~~~Va~~Akk~gkGveaI~~v--GDGyddLI~G~~a~id~~--vD-----vfV-vEGgPFN~-a~dRl~aFakaV 271 (505)
T PF10113_consen 203 APLDEMEEVAELAKKYGKGVEAIMHV--GDGYDDLITGLKACIDMG--VD-----VFV-VEGGPFNR-AKDRLKAFAKAV 271 (505)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEe--cCChHHHHHHHHHHHhcC--Cc-----EEE-EeCCCccc-chhHHHHHHHHH
Confidence 37899999999999999877765554 567889999999998886 32 233 35667643 233567788889
Q ss_pred HHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccC
Q 016605 296 ATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 335 (386)
Q Consensus 296 a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g 335 (386)
+++|++.|...+--.+. =.+....+|.+|-|.+++|
T Consensus 272 a~sRIL~pGkVVaTNGA----YEDEcRiGLRsGLN~iitG 307 (505)
T PF10113_consen 272 AASRILVPGKVVATNGA----YEDECRIGLRSGLNVIITG 307 (505)
T ss_pred HHheeeecCcEEecCCc----chHHHHHHHhhccceeecc
Confidence 99999888764422211 1355688999999999655
|
Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=89.85 E-value=5 Score=35.76 Aligned_cols=160 Identities=15% Similarity=0.129 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++-+.++-- . +..++.|+.+++..-++.+-.|. ++.+.++...++|.+.+--
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~------t----~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs 86 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR------T----PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS 86 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC------C----ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC
Confidence 58999999999999999998877531 1 33455566665432245455554 7999999999999987632
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
|.-+. +.++.+++.|+.+-.++ -|..|+..-+ ++| .+.+.+++ ...+
T Consensus 87 -------------P~~~~----~v~~~~~~~~i~~iPG~-----~TptEi~~A~----~~G--a~~vKlFP-----A~~~ 133 (204)
T TIGR01182 87 -------------PGLTP----ELAKHAQDHGIPIIPGV-----ATPSEIMLAL----ELG--ITALKLFP-----AEVS 133 (204)
T ss_pred -------------CCCCH----HHHHHHHHcCCcEECCC-----CCHHHHHHHH----HCC--CCEEEECC-----chhc
Confidence 22121 66788899998644433 3667765543 444 55555543 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.. + ..+...+-.+|+.-+ +.+|=+ ..+.-...|.+|+..+-.|.
T Consensus 134 GG-----~----~yikal~~plp~i~~-~ptGGV--~~~N~~~~l~aGa~~vg~Gs 177 (204)
T TIGR01182 134 GG-----V----KMLKALAGPFPQVRF-CPTGGI--NLANVRDYLAAPNVACGGGS 177 (204)
T ss_pred CC-----H----HHHHHHhccCCCCcE-EecCCC--CHHHHHHHHhCCCEEEEECh
Confidence 11 1 223445556676322 223223 33444677889999886666
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=6.1 Score=36.96 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh----hhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~----~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
++++.+++.+..+.+.|++-+-++|..+.++.++ ...+++...|+.+++.+.. ++..+...+.++.-.++|++.
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISIDT~~~~va~~al~aGadi 99 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSIDSFQPETQRYALKRGVGY 99 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEEECCCHHHHHHHHHcCCCE
Confidence 6899999999999999998777766433232222 2456677888888865544 455667889999888999887
Q ss_pred ee
Q 016605 198 YN 199 (386)
Q Consensus 198 v~ 199 (386)
|+
T Consensus 100 IN 101 (279)
T PRK13753 100 LN 101 (279)
T ss_pred EE
Confidence 65
|
|
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=89.64 E-value=20 Score=34.48 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=90.5
Q ss_pred HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe---------cCC---------C------------
Q 016605 133 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGM---------L------------ 182 (386)
Q Consensus 133 ~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t---------~g~---------l------------ 182 (386)
.+++.|+..|-+---..|..+.-..+++.+++.+++|+.|+.+.+. +|. +
T Consensus 32 ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~y 111 (332)
T PF07745_consen 32 ILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDY 111 (332)
T ss_dssp HHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHH
Confidence 3345788877552111233212357789999999999999886543 221 1
Q ss_pred CHHHHHHHHHhcc--CeeecccCchHHHHhhhCCCCCHHHHHHH----HHHHHHcCCeeeEeEEeec--CCCHHHHHHHH
Q 016605 183 EKHQAIELKKAGL--TAYNHNLDTSREFYSKIITTRSYDERLET----LKHVREAGINVCSGGIIGL--GEAEEDRVGLL 254 (386)
Q Consensus 183 ~~e~l~~Lk~aG~--~~v~i~le~~~~~~~~i~~~~s~~~~l~~----i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l 254 (386)
+.+.+..|+++|+ +.|.++=|.-...+--..+...++...+- ++.+++.+-. +-+|+-+ +.+.+.....+
T Consensus 112 T~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~~~~~~~~~~~~f 189 (332)
T PF07745_consen 112 TKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLANGGDNDLYRWFF 189 (332)
T ss_dssp HHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES-TTSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEECCCCchHHHHHHH
Confidence 5677789999994 56777766532222112223456554443 3444443322 2233323 66677788888
Q ss_pred HHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcc
Q 016605 255 HTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGR 313 (386)
Q Consensus 255 ~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~ 313 (386)
+.++..+.+.|.++++-| | +.+. +...+...+...+.-+.+.++-...++
T Consensus 190 ~~l~~~g~d~DviGlSyY-P-----~w~~---~l~~l~~~l~~l~~ry~K~V~V~Et~y 239 (332)
T PF07745_consen 190 DNLKAAGVDFDVIGLSYY-P-----FWHG---TLEDLKNNLNDLASRYGKPVMVVETGY 239 (332)
T ss_dssp HHHHHTTGG-SEEEEEE--S-----TTST----HHHHHHHHHHHHHHHT-EEEEEEE--
T ss_pred HHHHhcCCCcceEEEecC-C-----CCcc---hHHHHHHHHHHHHHHhCCeeEEEeccc
Confidence 889888766788888654 4 2221 566666666654443455444444444
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=89.22 E-value=16 Score=32.84 Aligned_cols=183 Identities=20% Similarity=0.133 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+.++.++.+.+.|++.+++..-.....|.+.+ .++++.+. ..++++.+..|..+.+.++.+.++|++.+.++-..
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~----~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVN----LPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAA 104 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCc----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 33445556677899998875422111122223 33444443 23667778888899999999999999998776443
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcC---CeeeEeEE------eec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAG---INVCSGGI------IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~G---i~v~~~~i------~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
.. +++...+. +++.| +-+..++- .|. ..+..+..++++.+.+.+ ++.+.++....
T Consensus 105 l~----------d~~~~~~~---~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g--~~~ii~~~~~~ 169 (230)
T TIGR00007 105 VE----------NPDLVKEL---LKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG--LEGIIYTDISR 169 (230)
T ss_pred hh----------CHHHHHHH---HHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC--CCEEEEEeecC
Confidence 31 22333333 33344 22333322 222 112235566777777775 66666655433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccc
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 339 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~ 339 (386)
.|+. ..++.+.+.+ .+... +..+-..+|-.+. .+. ...+..||+.++.|..+.
T Consensus 170 -~g~~----~g~~~~~i~~----i~~~~-~ipvia~GGi~~~-~di-~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 170 -DGTL----SGPNFELTKE----LVKAV-NVPVIASGGVSSI-DDL-IALKKLGVYGVIVGKALY 222 (230)
T ss_pred -CCCc----CCCCHHHHHH----HHHhC-CCCEEEeCCCCCH-HHH-HHHHHCCCCEEEEeHHHH
Confidence 2332 1223332222 22222 2222233332222 233 345678999998876443
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=19 Score=33.13 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|+..+.+.+..+..+| =++.++.+++ ..+++.......++.++.+-+.+|.|.|.+-+..+
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~G-------s~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L- 135 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGG-------SLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRIL- 135 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCC-------CHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC-
Confidence 34455677788888876553322233 2233344443 36778778888999999999999999997644332
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCC
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 286 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~ 286 (386)
+.++..+-++.+++.|+.+=+- -.|.+|+...+ +.+ ++.++++.-.. .| + ..
T Consensus 136 ----------~~~~l~~l~~~a~~lGle~LVE-----Vh~~~El~~a~----~~g--a~iiGINnRdL--~t-~----~v 187 (247)
T PRK13957 136 ----------TPSQIKSFLKHASSLGMDVLVE-----VHTEDEAKLAL----DCG--AEIIGINTRDL--DT-F----QI 187 (247)
T ss_pred ----------CHHHHHHHHHHHHHcCCceEEE-----ECCHHHHHHHH----hCC--CCEEEEeCCCC--cc-c----eE
Confidence 3345556678889999973221 23666665543 344 67788876432 11 1 12
Q ss_pred CHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 287 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 287 s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
+.....+ ..-++|+..+.++-+ ++....+...+..++|.+..|+.+..+
T Consensus 188 d~~~~~~----L~~~ip~~~~~IsES--GI~t~~d~~~l~~~~davLvG~~lm~~ 236 (247)
T PRK13957 188 HQNLVEE----VAAFLPPNIVKVGES--GIESRSDLDKFRKLVDAALIGTYFMEK 236 (247)
T ss_pred CHHHHHH----HHhhCCCCcEEEEcC--CCCCHHHHHHHHHhCCEEEECHHHhCC
Confidence 3333333 234567655556532 222222333344459999999866654
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.87 E-value=2.2 Score=41.28 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eEeEEeecCCCHHHHHHHHHHHhc
Q 016605 183 EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 183 ~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v--~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+-+.++...++|+|.|.+|...+ -+.+. ...+.+++.+.++.+|++|.++ .++.+. +.+..+.+.+.++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~-~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLL-HNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEecccc-ccchhhHHHHHHHHHHH
Confidence 46778888888999999998743 22111 2357889999999999999974 444443 46667788999999999
Q ss_pred CCCCCCeEee
Q 016605 260 LPTHPESVPI 269 (386)
Q Consensus 260 l~~~~~~v~~ 269 (386)
+| ++.+.+
T Consensus 91 ~G--vDaviv 98 (347)
T COG0826 91 LG--VDAVIV 98 (347)
T ss_pred cC--CCEEEE
Confidence 97 555544
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=21 Score=33.30 Aligned_cols=135 Identities=24% Similarity=0.334 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC--C----------------
Q 016605 122 MTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--L---------------- 182 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~--l---------------- 182 (386)
.+++.+.+.-+++.+ .|+-.+.+.+ +|. -.-+++++++.+..+. .++++..|+ .
T Consensus 97 ApvevLre~ye~aL~~~~VVGLsIgT--RPD----Clpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~ 169 (312)
T COG1242 97 APVEVLREMYEQALSEAGVVGLSIGT--RPD----CLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFAC 169 (312)
T ss_pred CcHHHHHHHHHHHhCcCCeeEEeecC--CCC----CCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHH
Confidence 456666555555544 4555555543 443 3447788888887754 455444443 2
Q ss_pred CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEEeec-CC--------------C
Q 016605 183 EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GE--------------A 246 (386)
Q Consensus 183 ~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-ge--------------t 246 (386)
-.+.++++++.|++.+.+-+-++ |+.++++.+++++.+.+.|+. +..+.+.-+ |- +
T Consensus 170 y~dav~r~rkrgIkvc~HiI~GL--------PgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls 241 (312)
T COG1242 170 YVDAVKRLRKRGIKVCTHLINGL--------PGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLS 241 (312)
T ss_pred HHHHHHHHHHcCCeEEEEEeeCC--------CCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceecc
Confidence 23445556666666555444332 467899999999999999987 888777755 53 3
Q ss_pred HHHHHHH-HHHHhcCCCCCCeEeeeeeee
Q 016605 247 EEDRVGL-LHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 247 ~ed~~~~-l~~l~~l~~~~~~v~~~~f~P 274 (386)
.+|-+++ .+++..+ +..+.++.+.-
T Consensus 242 ~eeYv~~~~d~le~l---pp~vviHRitg 267 (312)
T COG1242 242 LEEYVELVCDQLEHL---PPEVVIHRITG 267 (312)
T ss_pred HHHHHHHHHHHHHhC---CcceEEEEecC
Confidence 4555554 4666666 56777888764
|
|
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=88.52 E-value=24 Score=33.85 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCc-EEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM-EVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~-~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+.++.. ... + ...+..+.+...+. .-.+..+....+.++...++|++.+.
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p---~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHP---AAS-K----QSRIDIEIIASLGLKANIVTHIRCRLDDAKVAVELGVDGID 87 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC---CCC-H----HHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHCCcCEEE
Confidence 378999999999999999988876541 111 1 11222333332211 11222233346677788888998877
Q ss_pred cccCch-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 200 HNLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 200 i~le~~-~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
+..-.. -........ ....+++...++.+++.|+.+...+.-..-...+++.+..+.+..++ ++.+.+-
T Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g--~~~i~~~------ 159 (344)
T TIGR02146 88 IFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFG--VDRVGIA------ 159 (344)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCC--CCEEEEc------
Confidence 644222 222222222 12355777889999999998888777666667788899999888885 5553221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc--ccChhHHHhhhhcCcccc
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV--RFSMPEQALCFLAGANSI 332 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~--~~~~~~~~~~l~~Gan~~ 332 (386)
.|.. ...+.++...+...+...+...+.+.+ .. .+.-.....++.+||..+
T Consensus 160 dt~g----~~~p~~v~~~v~~~~d~~~~~~~~~H~-Hn~~g~avant~~al~~ga~~~ 212 (344)
T TIGR02146 160 DTVG----KAAPRQVYELIRTVVRVVPGVDIELHA-HNDTGCAVANAYNAIEGGATIV 212 (344)
T ss_pred CCCC----cCCHHHHHHHHHHHHHhCCCCeEEEEe-cCCCCHHHHHHHHHHHcCCCEE
Confidence 2221 123445555555555555543222211 11 111223456778887765
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=88.24 E-value=11 Score=33.99 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+++..-.....|.+. -++.++.+. ..++++.+..|..+.+.++++.++|++.+.++-..
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~----~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~ 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPV----NLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCcc----cHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 3444555666789999887653211112222 344555554 34678888889999999999999999998876544
Q ss_pred h
Q 016605 205 S 205 (386)
Q Consensus 205 ~ 205 (386)
+
T Consensus 107 l 107 (233)
T PRK00748 107 V 107 (233)
T ss_pred H
Confidence 4
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=19 Score=32.43 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe----cCCC-CHHH---HHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGML-EKHQ---AIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~l-~~e~---l~~Lk~a 193 (386)
.+.++|.+.++++.+.|+..+|+. |.+.+...+. ++..++.+++- .|.. .... .+...+.
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~---------p~~v~~a~~~---l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~ 86 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVN---------PSYVKLAAEL---LKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIAN 86 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC---------HHHHHHHHHH---hCCCCCeEEEEecccCCCChHHHHHHHHHHHHHc
Confidence 789999999999999999988873 3333333333 34445554433 2332 2222 3344456
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
|.+.+-+-+.-. .+ ..++|+.+.+-++.++++--..-.-+|+=. --+.+++....+.+.+.| ++++..
T Consensus 87 GA~EiD~Vin~~-----~~-~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~ag--adfIKT--- 155 (221)
T PRK00507 87 GADEIDMVINIG-----AL-KSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAG--ADFVKT--- 155 (221)
T ss_pred CCceEeeeccHH-----Hh-cCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhC--CCEEEc---
Confidence 888777544322 11 134688888888888875212233444433 347788999999998886 664433
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecCcccccChhHHHhhhhcCcccc
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+|-+. ....+.+....+ +...+ +..+..++|-.++ +.....+.+||+.+
T Consensus 156 ----sTG~~-~~gat~~~v~~m----~~~~~~~~~IKasGGIrt~--~~a~~~i~aGA~ri 205 (221)
T PRK00507 156 ----STGFS-TGGATVEDVKLM----RETVGPRVGVKASGGIRTL--EDALAMIEAGATRL 205 (221)
T ss_pred ----CCCCC-CCCCCHHHHHHH----HHHhCCCceEEeeCCcCCH--HHHHHHHHcCcceE
Confidence 22221 122455543333 23333 3344555543332 33466778999988
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=88.10 E-value=14 Score=34.11 Aligned_cols=80 Identities=9% Similarity=0.160 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC----------------------CCCCh-hhHHHHHHHHHHHhhc-CcEEEE
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD----------------------TIGRK-TNFNQILEYVKDIRDM-GMEVCC 177 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~----------------------~~ge~-~~~~~l~~~i~~ik~~-g~~i~~ 177 (386)
+++||..+..+.+.+.|+..+.+++...+ ..|.. ..-+.+.+.++.+|+. +.++++
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 78899988888888888887766532111 11211 1234566667777753 666777
Q ss_pred ecCCCCHHHHHHHHHhccCeeecc
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
-.|..+++.++.+.++|.|.+-++
T Consensus 195 GFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 195 GFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred eCCCCCHHHHHHHHhcCCCEEEEC
Confidence 778888888888888888887764
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.08 E-value=9.6 Score=37.27 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=50.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE----EEEecCC-----CCHHHHHH
Q 016605 119 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME----VCCTLGM-----LEKHQAIE 189 (386)
Q Consensus 119 ~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~----i~~t~g~-----l~~e~l~~ 189 (386)
|+..+-|-|.+.++.+.++|++-|-+... .+ ...++...++.+|+.|.+ ++.+... ...+.+++
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFDA----lN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ake 164 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFDA----LN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKE 164 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEechh----cc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHH
Confidence 44456677777888889999987766432 22 345677778888877665 2333221 23667788
Q ss_pred HHHhccCeeec
Q 016605 190 LKKAGLTAYNH 200 (386)
Q Consensus 190 Lk~aG~~~v~i 200 (386)
|.+.|+|+|.+
T Consensus 165 l~~~g~DSIci 175 (472)
T COG5016 165 LLEMGVDSICI 175 (472)
T ss_pred HHHcCCCEEEe
Confidence 88999999998
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=88.06 E-value=10 Score=31.22 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-E-EEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++++++.+. +.+.+-+++.+-. ....+.+.++++.+++.+.. + .+--|....+..+.|+++|++.+.
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~------~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA------GGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch------hhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 57888876654 5677777776521 13456677777777766542 2 233566677788999999998776
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
.
T Consensus 111 ~ 111 (132)
T TIGR00640 111 G 111 (132)
T ss_pred C
Confidence 4
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.56 E-value=5.2 Score=40.50 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
+++.+.++.+.+.|++.+++-.. .|.+ +.+.++++.+|+. ++++..-| ..+.+..+.|.++|+|.|.+++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a----~g~~---~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA----HGHQ---VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC----CCCc---HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECC
Confidence 46677788888899998887442 1333 7788999999865 55655522 4799999999999999999877
Q ss_pred Cch-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 203 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 203 e~~-~~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
-.. .-+...+.. .....-.+++.+.+++.|+++-++ |=-.+..|+.+-+. +| .+.+.+..+
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala----~G--A~~vm~g~~ 359 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA----AG--ASNVMVGSW 359 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH----cC--CCEEeechh
Confidence 554 211111111 124666778888888887663332 11235666666553 33 455555444
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=87.55 E-value=19 Score=31.57 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEe--cCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCT--LGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t--~g~l~~e~l~~Lk~aG~~~ 197 (386)
.+.|+..+.++.+.+. ++-+-++. +.....=.+.++.+++. ++.+... ........++.+.++|.+.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~--------~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~ 80 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGT--------PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADI 80 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCE
Confidence 5788999999888876 76654421 22222225666666643 4443222 1122234578899999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
+.+..++. .+...+.++.+++.|+.+...+ ++ -.|.+++.. +...+ ++.+.+++-.. ++
T Consensus 81 i~~h~~~~------------~~~~~~~i~~~~~~g~~~~v~~-~~-~~t~~e~~~----~~~~~--~d~v~~~~~~~-~~ 139 (202)
T cd04726 81 VTVLGAAP------------LSTIKKAVKAAKKYGKEVQVDL-IG-VEDPEKRAK----LLKLG--VDIVILHRGID-AQ 139 (202)
T ss_pred EEEEeeCC------------HHHHHHHHHHHHHcCCeEEEEE-eC-CCCHHHHHH----HHHCC--CCEEEEcCccc-cc
Confidence 98755442 1223356677788887654322 22 345666654 33333 56665532110 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+ .. .....+.+.++... ++..+-..+| .+++.-...+.+||+.+..|..+
T Consensus 140 ~-~~--~~~~~~~i~~~~~~-----~~~~i~~~GG---I~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 140 A-AG--GWWPEDDLKKVKKL-----LGVKVAVAGG---ITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred c-cC--CCCCHHHHHHHHhh-----cCCCEEEECC---cCHHHHHHHHhcCCCEEEEeehh
Confidence 1 11 12233333322221 3333333332 23444567788999999888643
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=22 Score=31.87 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++.++.++.+.+.|++-+-++- + . ++-++.|+.+++..-++.+-.|. ++.+.++...++|.+.+..
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~----~----~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--R----T----PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--C----C----ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 6899999999999999998776652 1 1 23445556665332234444444 6889999999999987653
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.-+. +.++.+++.|+.+- .|. -|+.|+. .+.++| .+.+.+
T Consensus 94 -------------P~~~~----~vi~~a~~~~i~~i----PG~-~TptEi~----~a~~~G--a~~vKl 134 (212)
T PRK05718 94 -------------PGLTP----PLLKAAQEGPIPLI----PGV-STPSELM----LGMELG--LRTFKF 134 (212)
T ss_pred -------------CCCCH----HHHHHHHHcCCCEe----CCC-CCHHHHH----HHHHCC--CCEEEE
Confidence 22222 56677777776532 232 3566643 345665 556655
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.97 E-value=15 Score=34.05 Aligned_cols=16 Identities=6% Similarity=0.256 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHc
Q 016605 122 MTKDAVMQAAQKAKEA 137 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~ 137 (386)
++.+++++.++.+.+.
T Consensus 76 ~t~~~~lel~~~~r~~ 91 (265)
T COG0159 76 VTLEDTLELVEEIRAK 91 (265)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3444555555544433
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.66 E-value=28 Score=32.57 Aligned_cols=173 Identities=14% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhh--cCcEEEEecCCCC----HHHHHHHHHhccCeeecccCchH-HHHhhhCCCCCHHHHHHHHHHHHH
Q 016605 158 FNQILEYVKDIRD--MGMEVCCTLGMLE----KHQAIELKKAGLTAYNHNLDTSR-EFYSKIITTRSYDERLETLKHVRE 230 (386)
Q Consensus 158 ~~~l~~~i~~ik~--~g~~i~~t~g~l~----~e~l~~Lk~aG~~~v~i~le~~~-~~~~~i~~~~s~~~~l~~i~~a~~ 230 (386)
.+.+++.++..++ .+..+.++.+-.+ .+.++.+.++|++.+.+++-... ..... -..+.+...+.++.+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~--~~~~~~~~~eiv~~vr~ 159 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQ--LGQDPEAVANLLKAVKA 159 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--cccCHHHHHHHHHHHHH
Confidence 3455555554443 2344444432222 33355556667777776654321 00000 02356666677777776
Q ss_pred c-CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec---------C--CCCCCCCCCC-CHHHHHHHHHH
Q 016605 231 A-GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV---------K--GTPLQDQKPV-EIWEMIRMIAT 297 (386)
Q Consensus 231 ~-Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~---------~--gT~l~~~~~~-s~~e~~~~~a~ 297 (386)
. ++.+.+.+- .+.+.++..++++.+.+.| ++.+.+..-.+- + .+........ .....++.+..
T Consensus 160 ~~~~pv~vKl~--~~~~~~~~~~~a~~l~~~G--ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~ 235 (289)
T cd02810 160 AVDIPLLVKLS--PYFDLEDIVELAKAAERAG--ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVAR 235 (289)
T ss_pred ccCCCEEEEeC--CCCCHHHHHHHHHHHHHcC--CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHH
Confidence 5 444333322 2457788999999999887 677776532210 0 0111111100 01112444555
Q ss_pred HHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCc
Q 016605 298 ARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK 337 (386)
Q Consensus 298 ~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~ 337 (386)
.+..++....-+..|-+. ..+.....+.+||+.++.+..
T Consensus 236 i~~~~~~~ipiia~GGI~-~~~da~~~l~~GAd~V~vg~a 274 (289)
T cd02810 236 LAARLQLDIPIIGVGGID-SGEDVLEMLMAGASAVQVATA 274 (289)
T ss_pred HHHhcCCCCCEEEECCCC-CHHHHHHHHHcCccHheEcHH
Confidence 555554212223333333 233346677899999977753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=16 Score=33.62 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec--C--CCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL--G--MLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~--g--~l~~e~l~~Lk~aG~~~v 198 (386)
..+.+.+.++.+++.|++.|+++.= ++ .| ....+.+.++++..+.. ++..+- . .-..+.++.|.+.|+++|
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L-~~-dg-~vD~~~~~~Li~~a~~~--~vTFHRAfD~~~d~~~al~~l~~lG~~rI 145 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVL-DV-DG-HVDMPRMRKIMAAAGPL--AVTFHRAFDMCANPLNALKQLADLGVARI 145 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE-CC-CC-CcCHHHHHHHHHHhcCC--ceEEechhhccCCHHHHHHHHHHcCCCEE
Confidence 4566777788888999999987542 22 12 25667777777777543 332221 1 123567899999999998
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHH
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
.-+= ...+..+-++.++.+.+ ++ .. . +|.|-|-+.+.+.++
T Consensus 146 LTSG-----------g~~~a~~g~~~L~~lv~~a~-~~-~-Im~GgGV~~~Nv~~l 187 (248)
T PRK11572 146 LTSG-----------QQQDAEQGLSLIMELIAASD-GP-I-IMAGAGVRLSNLHKF 187 (248)
T ss_pred ECCC-----------CCCCHHHHHHHHHHHHHhcC-CC-E-EEeCCCCCHHHHHHH
Confidence 7531 11234444555555544 33 21 2 888889998888776
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.64 E-value=27 Score=34.20 Aligned_cols=161 Identities=15% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 158 FNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 158 ~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
.+.+.++++++++.++.+.+..+. ...+.++.+.++|++.+.+.--+....| ..+..+|.++. +..++.+++|-
T Consensus 118 p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~--~sg~~~p~~l~---~~i~~~~IPVI 192 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEH--VSTSGEPLNLK---EFIGELDVPVI 192 (369)
T ss_pred hHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhc--cCCCCCHHHHH---HHHHHCCCCEE
Confidence 466778888888766554443332 4578899999999999987543332222 12233565444 34455676653
Q ss_pred EeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHHHHhCCCc---cee-
Q 016605 237 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATARIVMPKA---MVR- 308 (386)
Q Consensus 237 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~----~~~~s~~e~~~~~a~~R~~lp~~---~i~- 308 (386)
.|-..+.++..+.++ .| ++.|.+. ..++.... ...+....+.+..+..+.++... .++
T Consensus 193 ----~G~V~t~e~A~~~~~----aG--aDgV~~G----~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpV 258 (369)
T TIGR01304 193 ----AGGVNDYTTALHLMR----TG--AAGVIVG----PGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHV 258 (369)
T ss_pred ----EeCCCCHHHHHHHHH----cC--CCEEEEC----CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 344556777665553 44 5555421 11111111 11222223333333334443322 133
Q ss_pred ecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 309 LSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 309 i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
+..|-+.-+.+. ..+|.+||+.++.|..+
T Consensus 259 IAdGGI~tg~di-~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 259 IADGGIETSGDL-VKAIACGADAVVLGSPL 287 (369)
T ss_pred EEeCCCCCHHHH-HHHHHcCCCEeeeHHHH
Confidence 344444444443 77899999999766543
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=86.59 E-value=42 Score=34.62 Aligned_cols=223 Identities=11% Similarity=0.023 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCH-----------HHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEK-----------HQAIE 189 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~-----------e~l~~ 189 (386)
....+.++.++.+.+.|++++++.--.....+ +...+..+++|+++. +..+++.+--|..+. |.+++
T Consensus 264 ~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~-~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 264 RNLGKPVELAGQYYKDGADEVAFLNITGFRDF-PLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEEECCCCcCC-cccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHH
Confidence 34556677788888999999987532110001 223456788888876 457777777777654 78999
Q ss_pred HHHhccCeeecccCch--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE----------------------------
Q 016605 190 LKKAGLTAYNHNLDTS--REFYSKIITTRSYDERLETLKHVREAGINVCSGG---------------------------- 239 (386)
Q Consensus 190 Lk~aG~~~v~i~le~~--~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~---------------------------- 239 (386)
+.++|++.|.++-.++ ++.|-.-....+++-+-++.+..-+.-+-+.++.
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEY 422 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccc
Confidence 9999999999986665 2222221223344444333333211111122221
Q ss_pred ----Eeec---CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCc
Q 016605 240 ----IIGL---GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 312 (386)
Q Consensus 240 ----i~Gl---get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g 312 (386)
++-. ..+.-+..+.++.+.++| ...+-++.. -..||.- .++.+- .+.++.+ . +..+-.++|
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~G--ageil~t~i-d~DGt~~----G~d~~l-~~~v~~~---~-~ipviasGG 490 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELG--AGEILLNCI-DCDGQGK----GFDIEL-VKLVSDA---V-TIPVIASSG 490 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcC--CCEEEEeec-ccccccc----CcCHHH-HHHHHhh---C-CCCEEEECC
Confidence 1111 123456677777778886 545544432 2335532 223332 2322211 1 212233433
Q ss_pred ccccChhHHHhhhh-cCccccccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 313 RVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 313 ~~~~~~~~~~~~l~-~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
--+. .+. ...|. .||+....+. +..-...+..+.+..+++.|+..
T Consensus 491 ~g~~-~d~-~~~~~~~~~~a~~aa~-~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 491 AGTP-EHF-SDVFSKTNASAALAAG-IFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CCCH-HHH-HHHHhcCCccEEEEEe-eeccCCCCHHHHHHHHHHCCCcc
Confidence 2222 222 33443 5677765554 33345678999999999999543
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=86.45 E-value=16 Score=33.07 Aligned_cols=127 Identities=11% Similarity=0.131 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC--------CCHHHHHH----H
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIE----L 190 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~--------l~~e~l~~----L 190 (386)
+.+.....++++.+.|+..+.++--... ..+....+.+.++.+..++.++++.++... ++.+.+.+ .
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~-~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a 152 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGS-EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG 152 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence 4455566677788889988755431110 011123334444444445668776554322 34455554 5
Q ss_pred HHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeEeEEee-c-CCCHHHHHHHHHHHhcCCCCCCeE
Q 016605 191 KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIG-L-GEAEEDRVGLLHTLATLPTHPESV 267 (386)
Q Consensus 191 k~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~-Gi~v~~~~i~G-l-get~ed~~~~l~~l~~l~~~~~~v 267 (386)
.++|.|.|-++..+ + ++.++.+.+. ++++ ++.| . ..|.++..+.+..+.+.| .+.+
T Consensus 153 ~~~GaD~Ik~~~~~------------~----~~~~~~i~~~~~~pv---v~~GG~~~~~~~~~l~~~~~~~~~G--a~gv 211 (235)
T cd00958 153 AELGADIVKTKYTG------------D----AESFKEVVEGCPVPV---VIAGGPKKDSEEEFLKMVYDAMEAG--AAGV 211 (235)
T ss_pred HHHCCCEEEecCCC------------C----HHHHHHHHhcCCCCE---EEeCCCCCCCHHHHHHHHHHHHHcC--CcEE
Confidence 67799988874211 2 2334444432 3443 3333 3 257888888888888887 5555
Q ss_pred eeee
Q 016605 268 PINA 271 (386)
Q Consensus 268 ~~~~ 271 (386)
.+..
T Consensus 212 ~vg~ 215 (235)
T cd00958 212 AVGR 215 (235)
T ss_pred Eech
Confidence 4433
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=86.34 E-value=7.9 Score=34.24 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++-+-++-- .| ..++.|+.+++..-++.+-.|+ ++.+.++...++|.+.+--
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~------t~----~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLR------TP----NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETT------ST----THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC------Cc----cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 57789999999999999988777531 12 2345555555322234444454 7999999999999876542
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
|.-+ -+.++.+++.|+.+-.+++ |..|+..-+ ++| .+.+.+ +|...+
T Consensus 87 -------------P~~~----~~v~~~~~~~~i~~iPG~~-----TptEi~~A~----~~G--~~~vK~-----FPA~~~ 133 (196)
T PF01081_consen 87 -------------PGFD----PEVIEYAREYGIPYIPGVM-----TPTEIMQAL----EAG--ADIVKL-----FPAGAL 133 (196)
T ss_dssp -------------SS------HHHHHHHHHHTSEEEEEES-----SHHHHHHHH----HTT---SEEEE-----TTTTTT
T ss_pred -------------CCCC----HHHHHHHHHcCCcccCCcC-----CHHHHHHHH----HCC--CCEEEE-----ecchhc
Confidence 1111 1567888999997555444 677766554 444 444444 334333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. -- ..+...+-.+|+..+ +.+|-++. +.-...|.+|+..+..|.
T Consensus 134 G------G~---~~ik~l~~p~p~~~~-~ptGGV~~--~N~~~~l~ag~~~vg~Gs 177 (196)
T PF01081_consen 134 G------GP---SYIKALRGPFPDLPF-MPTGGVNP--DNLAEYLKAGAVAVGGGS 177 (196)
T ss_dssp T------HH---HHHHHHHTTTTT-EE-EEBSS--T--TTHHHHHTSTTBSEEEES
T ss_pred C------cH---HHHHHHhccCCCCeE-EEcCCCCH--HHHHHHHhCCCEEEEECc
Confidence 2 12 233444556776322 23332333 334667788988876665
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.26 E-value=24 Score=31.54 Aligned_cols=193 Identities=15% Similarity=0.067 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE--EEEecCCCC--HHHHHHHHHhccC
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLE--KHQAIELKKAGLT 196 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~--i~~t~g~l~--~e~l~~Lk~aG~~ 196 (386)
.++.++.++.++++.+. +.-+-. |-|+...+=.+.++.+|+...+ +....-+.+ .=..+...++|.|
T Consensus 12 ~~~l~~Ai~~a~~v~~~-~diiEv--------GTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd 82 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-VDIIEV--------GTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGAD 82 (217)
T ss_pred ccCHHHHHHHHHHhhhc-ceEEEe--------CcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCC
Confidence 37888999888887765 332222 2366666777888888865322 333322222 3346677889999
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.+.+.- -.+.+....+++.+++.|..+-+.++- .. ++.+-.+++++++ ++.+.++.=+-
T Consensus 83 ~~tV~g------------~A~~~TI~~~i~~A~~~~~~v~iDl~~--~~---~~~~~~~~l~~~g--vd~~~~H~g~D-- 141 (217)
T COG0269 83 WVTVLG------------AADDATIKKAIKVAKEYGKEVQIDLIG--VW---DPEQRAKWLKELG--VDQVILHRGRD-- 141 (217)
T ss_pred EEEEEe------------cCCHHHHHHHHHHHHHcCCeEEEEeec--CC---CHHHHHHHHHHhC--CCEEEEEeccc--
Confidence 998732 224556678899999999988887763 23 4555566667676 66666654221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
....... ++.+. +. ..+...+ ...+.+.+ ++.++.-......|++-++.|. ..| ...++.+..+.++
T Consensus 142 -~q~~G~~-~~~~~-l~---~ik~~~~~g~~vAVaG---GI~~~~i~~~~~~~~~ivIvGr-aIt-~a~dp~~~a~~~~ 209 (217)
T COG0269 142 -AQAAGKS-WGEDD-LE---KIKKLSDLGAKVAVAG---GITPEDIPLFKGIGADIVIVGR-AIT-GAKDPAEAARKFK 209 (217)
T ss_pred -HhhcCCC-ccHHH-HH---HHHHhhccCceEEEec---CCCHHHHHHHhcCCCCEEEECc-hhc-CCCCHHHHHHHHH
Confidence 1111211 12222 22 2222222 23344554 3445544556667888888886 333 2344444444443
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=28 Score=32.30 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh-------------hhHHHHHHHHHHHhh-cCcE-EEEe--cC---C
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRD-MGME-VCCT--LG---M 181 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~-------------~~~~~l~~~i~~ik~-~g~~-i~~t--~g---~ 181 (386)
+.+.-.+.++.+.+.|++-+-++--..+|. ..| ...+.++++++++++ ..++ +..+ |- .
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 567778888888889998777653222221 112 123467888888874 3444 2222 11 1
Q ss_pred CCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 182 LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 182 l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
-.++.++.++++|++.+.+- .-.+++.-+.++.+++.|+... +++...-+.+.+....+...
T Consensus 107 G~e~F~~~~~~aGvdgviip-------------DLP~ee~~~~~~~~~~~gi~~I--~lv~PtT~~eri~~i~~~a~--- 168 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIP-------------DLPYEESDYLISVCNLYNIELI--LLIAPTSSKSRIQKIARAAP--- 168 (263)
T ss_pred CHHHHHHHHHHcCCeEEEec-------------CCCHHHHHHHHHHHHHcCCCEE--EEECCCCCHHHHHHHHHhCC---
Confidence 23778999999999998872 2245666677788899998533 33333334444444433332
Q ss_pred CCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCccccccCCcc
Q 016605 262 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 262 ~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~~~g~~~ 338 (386)
-++.+.. .+|+--.. ..-..++.+.+...|..... ++.-| +++. ++........||+.++.|..+
T Consensus 169 ---gFIY~vS---~~GvTG~~--~~~~~~~~~~i~~ir~~t~~---Pi~vG-FGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 169 ---GCIYLVS---TTGVTGLK--TELDKKLKKLIETIKKMTNK---PIILG-FGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred ---CcEEEEc---CCCCCCCC--ccccHHHHHHHHHHHHhcCC---CEEEE-CCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 1233322 34433211 11234456666767764422 22222 2333 333344566889999999754
|
|
| >cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain | Back alignment and domain information |
|---|
Probab=86.15 E-value=25 Score=33.19 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhcCcEEEEecCC-----C----------CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHH
Q 016605 159 NQILEYVKDIRDMGMEVCCTLGM-----L----------EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLE 223 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~~i~~t~g~-----l----------~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~ 223 (386)
..+..-|+.+|..|.++.++.|- + -....+.+..+|++.|-+.+|... .......+++.+
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-----~~d~~~~~~~~~ 128 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-----LTDTAAIDRRAQ 128 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-----cccchhHHHHHH
Confidence 46677788888878777666431 1 123455667789999999998852 111234678888
Q ss_pred HHHHHHHc--CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 224 TLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 224 ~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+|+.+++. ++.+..++-... |-+.+ =.++++.++..|+.++.|.++.+-
T Consensus 129 al~~Lq~~~p~l~vs~Tlp~~p~gl~~~-g~~~l~~a~~~Gv~~d~VNiMtmD 180 (294)
T cd06543 129 ALALLQKEYPDLKISFTLPVLPTGLTPD-GLNVLEAAAANGVDLDTVNIMTMD 180 (294)
T ss_pred HHHHHHHHCCCcEEEEecCCCCCCCChh-HHHHHHHHHHcCCCcceeeeeeec
Confidence 99988876 555666554433 44432 245777777777556777776654
|
Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=86.04 E-value=41 Score=35.81 Aligned_cols=187 Identities=16% Similarity=0.170 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|+.-+.+.+......|. +++ ++.++ ...+++....-.+++.++.+-+.+|.|.|.+-+..+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs---~~~----l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L- 144 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGS---LDD----FDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAAL- 144 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCC---HHH----HHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhc-
Confidence 444556677888888776532222232 222 33333 246777777778899999999999999998755444
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCC
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 286 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~ 286 (386)
+.++..+-++.+++.|+.+=+- -.|.+|+...+ +.+ ++.|+++.-.. ... ..
T Consensus 145 ----------~~~~l~~l~~~a~~lGme~LvE-----vh~~~el~~a~----~~g--a~iiGINnRdL------~tf-~v 196 (695)
T PRK13802 145 ----------DDAQLKHLLDLAHELGMTVLVE-----THTREEIERAI----AAG--AKVIGINARNL------KDL-KV 196 (695)
T ss_pred ----------CHHHHHHHHHHHHHcCCeEEEE-----eCCHHHHHHHH----hCC--CCEEEEeCCCC------ccc-ee
Confidence 1234446678889999973221 24666665544 344 67788876432 111 12
Q ss_pred CHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcC
Q 016605 287 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 287 s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G 357 (386)
+.....++ +-++|+..+.++-+=+.- +..-.....+|+|.++.|+.+..+ .++...++-+..+|
T Consensus 197 d~~~t~~L----~~~ip~~~~~VsESGI~~-~~d~~~l~~~G~davLIGeslm~~--~dp~~~~~~l~~~~ 260 (695)
T PRK13802 197 DVNKYNEL----AADLPDDVIKVAESGVFG-AVEVEDYARAGADAVLVGEGVATA--DDHELAVERLVKAG 260 (695)
T ss_pred CHHHHHHH----HhhCCCCcEEEEcCCCCC-HHHHHHHHHCCCCEEEECHHhhCC--CCHHHHHHHHHhcc
Confidence 33333333 234566555555321221 222344557899999999876655 34555555556555
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=86.02 E-value=6.1 Score=35.34 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----ChhhHHHHHHHHHHHhh--cCcEEEEecCCCCHHHHHHHHHhcc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g----e~~~~~~l~~~i~~ik~--~g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.+.++.++.+++..+.|++-+-+.++.+.++. +...++++..+++.+++ .++.+++. ...++.++.--++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID--T~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID--TFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--CCCHHHHHHHHHcCc
Confidence 56788888899999999988888765433322 22456788888888875 35555443 345666666666676
Q ss_pred Ceee
Q 016605 196 TAYN 199 (386)
Q Consensus 196 ~~v~ 199 (386)
+.++
T Consensus 94 ~~in 97 (210)
T PF00809_consen 94 DIIN 97 (210)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 6554
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.93 E-value=29 Score=32.47 Aligned_cols=183 Identities=16% Similarity=0.106 Sum_probs=113.7
Q ss_pred EEEecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCC-CCHHHHHHHHHHHHHc-CCeeeEeEEeecCCCHHHHHH
Q 016605 175 VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITT-RSYDERLETLKHVREA-GINVCSGGIIGLGEAEEDRVG 252 (386)
Q Consensus 175 i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~-~s~~~~l~~i~~a~~~-Gi~v~~~~i~Glget~ed~~~ 252 (386)
+.+.+|..+.-..+..+++|...+..+=-+....+-.=..+ .+++++++.++.+.++ .+++.+++=-|+|+ ...+.+
T Consensus 19 ~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvar 97 (289)
T COG2513 19 PLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVAR 97 (289)
T ss_pred CEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHH
Confidence 34557778888899999999998886533331111111112 2699999998887765 89999999999998 889999
Q ss_pred HHHHHhcCCCCCCeEeee-eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--cceeecC---cccccCh--hHHHhh
Q 016605 253 LLHTLATLPTHPESVPIN-ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK--AMVRLSA---GRVRFSM--PEQALC 324 (386)
Q Consensus 253 ~l~~l~~l~~~~~~v~~~-~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~--~~i~i~~---g~~~~~~--~~~~~~ 324 (386)
++..+.+.| +.-+.+- ...|..--.+.+.+..+.+++.+.+..++..-++ ..|..-+ .+.++.. .-....
T Consensus 98 tV~~~~~aG--~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 98 TVRELEQAG--AAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHcC--cceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 999998887 4444442 2223221123455668899999999888877653 2221111 1112221 123445
Q ss_pred hhcCccccccCC------------cc-------ccCCCCChhHHHHHHHHcCCCc
Q 016605 325 FLAGANSIFTGE------------KL-------LTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 325 l~~Gan~~~~g~------------~~-------~t~~~~~~~~~~~~i~~~G~~p 360 (386)
..+||+.++..- .+ .|..+.++.-....++++|+.-
T Consensus 176 ~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~ 230 (289)
T COG2513 176 VEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKR 230 (289)
T ss_pred HHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceE
Confidence 679999997541 01 1223444444456688888754
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.83 E-value=8.1 Score=35.91 Aligned_cols=80 Identities=9% Similarity=0.043 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc----------------------CCCCCC-hhhHHHHHHHHHHHhhc-CcEEEE
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAW----------------------RDTIGR-KTNFNQILEYVKDIRDM-GMEVCC 177 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~----------------------~~~~ge-~~~~~~l~~~i~~ik~~-g~~i~~ 177 (386)
+++||..+..+.+.+.|+..+.+..-. ....|. ....+.+.++++.+|+. +.++++
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 678888888888888887766655321 111122 23346677777777753 666777
Q ss_pred ecCCCCHHHHHHHHHhccCeeecc
Q 016605 178 TLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 178 t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
--|..+++.++.+.++|.|.+-++
T Consensus 208 GFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 208 GFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred ECCcCCHHHHHHHHhcCCCEEEEC
Confidence 778888999999999998888775
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.75 E-value=21 Score=31.88 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=69.6
Q ss_pred HHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe-cCCC-CHHHHHHHHHhccCeeec--ccCchH
Q 016605 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-LGML-EKHQAIELKKAGLTAYNH--NLDTSR 206 (386)
Q Consensus 131 ~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t-~g~l-~~e~l~~Lk~aG~~~v~i--~le~~~ 206 (386)
++.+.+.|.+-+.+.|. ...+.+...++..++.|.++.+. .|.. .++..+.|+++|++.+.+ +.|.-
T Consensus 73 ~~ma~~aGAd~~tV~g~--------A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q- 143 (217)
T COG0269 73 ARMAFEAGADWVTVLGA--------ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQ- 143 (217)
T ss_pred HHHHHHcCCCEEEEEec--------CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHh-
Confidence 55667889988777663 23577889999999988886443 2333 466677777799998764 44431
Q ss_pred HHHhhhCCCCCH-HHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 207 EFYSKIITTRSY-DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 207 ~~~~~i~~~~s~-~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
..+.+| .+.++.++.+.+.|+.+.+.. |-+++++...
T Consensus 144 ------~~G~~~~~~~l~~ik~~~~~g~~vAVaG----GI~~~~i~~~ 181 (217)
T COG0269 144 ------AAGKSWGEDDLEKIKKLSDLGAKVAVAG----GITPEDIPLF 181 (217)
T ss_pred ------hcCCCccHHHHHHHHHhhccCceEEEec----CCCHHHHHHH
Confidence 135566 678888999999887755421 4566665443
|
|
| >PRK09490 metH B12-dependent methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=66 Score=36.66 Aligned_cols=196 Identities=14% Similarity=0.155 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
-+.+++++.+++..+.|+.-+-+..| .+...+...+.+++..|..+++ ..+++++ .....+.++.--+. |...|
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g-~~~id~~eem~rvv~~i~~~~~~~~vPlsI--DS~~~~ViEaaLk~~~G~~II 457 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMD-EGMLDSEAAMVRFLNLIASEPDIARVPIMI--DSSKWEVIEAGLKCIQGKGIV 457 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHhhhccCCceEEE--eCCcHHHHHHHHhhcCCCCEE
Confidence 57899999999999999977666543 2222334556667776666554 2555543 34567777766665 76655
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHHHHHHHHHH----h-cCCCCCCeEeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLHTL----A-TLPTHPESVPIN 270 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~l~~l----~-~l~~~~~~v~~~ 270 (386)
| ++.+.. . ++..+.+..++++|..+.+..+ -|.-.|.++..+.++.+ . +.|..++.|.|-
T Consensus 458 NSIs~~~~---------~---~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~D 525 (1229)
T PRK09490 458 NSISLKEG---------E---EKFIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIFD 525 (1229)
T ss_pred EeCCCCCC---------C---ccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEc
Confidence 5 333211 0 1223556778889988665555 46667888887775444 2 255445666666
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC------------hhHHHhhhhcCccccc
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS------------MPEQALCFLAGANSIF 333 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~------------~~~~~~~l~~Gan~~~ 333 (386)
+++-.-+|-.... .....+.++.+...+..+|...+...-+.++|+ .-.-.+++.+|-+.-+
T Consensus 526 plv~~v~t~~ee~-~~~~~~~leair~ik~~~P~~~~~~GlSNiSFgl~g~~~~R~~lns~FL~~a~~aGld~aI 599 (1229)
T PRK09490 526 PNIFAVATGIEEH-NNYAVDFIEATRWIKQNLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMDMGI 599 (1229)
T ss_pred CCcceeecChHHH-HHHHHHHHHHHHHHHHHCCCCcEEEeeccccccCCCCCchHHHHHHHHHHHHHHcCcchhh
Confidence 6543224432211 123456677777778888875432221112222 2233556777877654
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=85.17 E-value=30 Score=33.29 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhh-cCcEEEEecCCCC----HHHHHHHHHhccCeeecccCchHHHHhhhCCCCCH-HHHHHHHHHHHHc
Q 016605 158 FNQILEYVKDIRD-MGMEVCCTLGMLE----KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSY-DERLETLKHVREA 231 (386)
Q Consensus 158 ~~~l~~~i~~ik~-~g~~i~~t~g~l~----~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~-~~~l~~i~~a~~~ 231 (386)
.+.+++.++.+++ .+..+.++.+..+ .+.++.+.++|+|.+.+++-..+. ..... +.+. +.+.+.++.+++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~-g~~~~~~~~eil~~v~~~ 163 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS-GAEVEQRYLDILRAVKSA 163 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc-cccHHHHHHHHHHHHHhc
Confidence 4566666666653 3455544442222 255666677788888876632110 00111 2222 3456667776654
Q ss_pred -CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC------CCCC--CC-CCCHHHHHHHHHHHHHh
Q 016605 232 -GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT------PLQD--QK-PVEIWEMIRMIATARIV 301 (386)
Q Consensus 232 -Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT------~l~~--~~-~~s~~e~~~~~a~~R~~ 301 (386)
.+++.+-+.. +..++.++++.+.+.| ++.+.+..-.+...- +... .+ +......++.++..+..
T Consensus 164 ~~iPV~vKl~p----~~~~~~~~a~~l~~~G--~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~ 237 (334)
T PRK07565 164 VSIPVAVKLSP----YFSNLANMAKRLDAAG--ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR 237 (334)
T ss_pred cCCcEEEEeCC----CchhHHHHHHHHHHcC--CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh
Confidence 4554444322 2346778888888886 666655432221100 0000 00 11112223444444333
Q ss_pred CCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCC-----ChhHHHHHHHHcCCCc
Q 016605 302 MPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNN-----DFDADQLMFKVLGLTP 360 (386)
Q Consensus 302 lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~-----~~~~~~~~i~~~G~~p 360 (386)
. +..|-..+| +.- .......+.+||+.+..+..++. .++ =.+++..++++.||.-
T Consensus 238 ~-~ipIig~GG-I~s-~~Da~e~l~aGA~~V~v~t~~~~-~g~~~~~~i~~~L~~~l~~~g~~~ 297 (334)
T PRK07565 238 V-GADLAATTG-VHD-AEDVIKMLLAGADVVMIASALLR-HGPDYIGTILRGLEDWMERHGYES 297 (334)
T ss_pred c-CCCEEEECC-CCC-HHHHHHHHHcCCCceeeehHHhh-hCcHHHHHHHHHHHHHHHHcCCCC
Confidence 3 211212222 222 23346677899999966643332 111 2355667777778743
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.12 E-value=30 Score=31.50 Aligned_cols=175 Identities=16% Similarity=0.166 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHH----HHHHHHhccCeeecccCc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ----AIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~----l~~Lk~aG~~~v~i~le~ 204 (386)
..++.+.+.|.++|... ...+++.+.+..+++.+..+.++..-.+.+. ++.+.+ +.+.|.+++--
T Consensus 39 ~aa~~~~~~~~~ef~~~----------~~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gC 107 (233)
T cd02911 39 EAARKLVKRGRKEFLPD----------DPLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHC 107 (233)
T ss_pred HHHHHHHhcCCcccccc----------chHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCC
Confidence 34455666777666321 1456666677767665656555543333333 333334 35777777654
Q ss_pred h-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 205 S-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 205 ~-~~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
. +++.+.=.+ .++++...+.++.+++.++++.+-+=.| .+ ++..++.+.+.+.| ++.+.+....+ +
T Consensus 108 P~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g--~~-~~~~~la~~l~~aG--~d~ihv~~~~~--g--- 177 (233)
T cd02911 108 RQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAG--VD-VDDEELARLIEKAG--ADIIHVDAMDP--G--- 177 (233)
T ss_pred CcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCC--cC-cCHHHHHHHHHHhC--CCEEEECcCCC--C---
Confidence 4 443332111 2367888888888888777766655554 33 66778888888886 66554432211 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
...+.+ .+...+ .+. .-+..|-+. ..+.....+..||+.++.|.
T Consensus 178 ---~~ad~~----~I~~i~---~~i-pVIgnGgI~-s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 178 ---NHADLK----KIRDIS---TEL-FIIGNNSVT-TIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred ---CCCcHH----HHHHhc---CCC-EEEEECCcC-CHHHHHHHHHcCCCEEEEcC
Confidence 112222 222222 221 122223222 23334556678999998875
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.94 E-value=7.1 Score=35.23 Aligned_cols=219 Identities=14% Similarity=0.120 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
..-+.++.++.+.+.|+++++|.--... ....+-+++.+++.. ...+++++--|..+.+.++++..+|.|-|+++
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs----~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS----SEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc----cccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeC
Confidence 4445677788888899999887532222 223466778887775 45788888889999999999999999999997
Q ss_pred cCch--HHHHhhhCCCCCHHHHHHHHHHHHH-cCCe-eeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 202 LDTS--REFYSKIITTRSYDERLETLKHVRE-AGIN-VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 202 le~~--~~~~~~i~~~~s~~~~l~~i~~a~~-~Gi~-v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
-.+. +++...+......+-++=+|+.-++ -|-. -...+++|= -.|.-+..+-.+.+.++| .-.+-++.. -..
T Consensus 104 saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~G--AGEIlLtsm-D~D 180 (256)
T COG0107 104 SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELG--AGEILLTSM-DRD 180 (256)
T ss_pred hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcC--CceEEEeee-ccc
Confidence 6555 3332222110000000000000010 1100 001122221 234455666666777776 445555443 344
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcC-ccccccCCccccCCCCChhHHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~G-an~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
||... .+.+. .+ ..+.... ..+-.++|--+ +.--..+|..| |+...... +..-...+..+....+.+
T Consensus 181 Gtk~G----yDl~l-~~---~v~~~v~-iPvIASGGaG~--~ehf~eaf~~~~adAaLAAs-iFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 181 GTKAG----YDLEL-TR---AVREAVN-IPVIASGGAGK--PEHFVEAFTEGKADAALAAS-IFHFGEITIGEVKEYLAE 248 (256)
T ss_pred ccccC----cCHHH-HH---HHHHhCC-CCEEecCCCCc--HHHHHHHHHhcCccHHHhhh-hhhcCcccHHHHHHHHHH
Confidence 66532 22222 22 2222111 11122332222 12224566555 55553332 222345688999999999
Q ss_pred cCCCc
Q 016605 356 LGLTP 360 (386)
Q Consensus 356 ~G~~p 360 (386)
.|..+
T Consensus 249 ~gi~V 253 (256)
T COG0107 249 QGIEV 253 (256)
T ss_pred cCCCc
Confidence 99654
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=84.43 E-value=17 Score=37.10 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeecccC
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le 203 (386)
+++.+.+....+.|++-+-++++.. .| ..+.+...++.+++. +..+ +....+.+.++.--++|.+.|+ ++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st----~p-~~~~v~~~V~~l~~~~~~pI--SIDT~~~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF----DD-DPDVVKEKVKTALDALDSPV--IADTPTLDELYEALKAGASGVI-MPD 236 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC----CC-cHHHHHHHHHHHHhhCCCcE--EEeCCCHHHHHHHHHcCCCEEE-ECC
Confidence 8899999999999998777765432 12 234678888888754 5554 4455678888888888988877 443
Q ss_pred ch--HHHHhhhC---------C---CCCHHHHHHHHHHHHHcCC-eeeEeEEeecCCCHHHHHHHHHHHh----cCCCCC
Q 016605 204 TS--REFYSKII---------T---TRSYDERLETLKHVREAGI-NVCSGGIIGLGEAEEDRVGLLHTLA----TLPTHP 264 (386)
Q Consensus 204 ~~--~~~~~~i~---------~---~~s~~~~l~~i~~a~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~----~l~~~~ 264 (386)
.. ++..+.+. + ...++...+.++.+.++|+ .+-.+-++|. ...++.+.+..++ .++ -+
T Consensus 237 ~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~--~~~~l~~sL~~l~~~r~~~~-~P 313 (499)
T TIGR00284 237 VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP--PLLGLLESIIRFRRASRLLN-VP 313 (499)
T ss_pred ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc--chHHHHHHHHHHHHHHHhcC-Cc
Confidence 32 33322111 1 2245667788899999999 4556655554 2234666655555 243 23
Q ss_pred CeEeeeee
Q 016605 265 ESVPINAL 272 (386)
Q Consensus 265 ~~v~~~~f 272 (386)
-.+++...
T Consensus 314 il~GvSNv 321 (499)
T TIGR00284 314 LVFGAANV 321 (499)
T ss_pred EEEeeccc
Confidence 34555443
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=84.19 E-value=41 Score=32.34 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC----------------C-CCh---------hhHHHHHHHHHHHhhcCcEEE
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT----------------I-GRK---------TNFNQILEYVKDIRDMGMEVC 176 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~----------------~-ge~---------~~~~~l~~~i~~ik~~g~~i~ 176 (386)
+.+...+.++.+++.|.+-|-||.-.... + ++. +..+++.++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 67888888999999999877776421100 0 000 112334445555556788876
Q ss_pred EecCCCCHHHHHHHHHhccCeeeccc-CchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 177 CTLGMLEKHQAIELKKAGLTAYNHNL-DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 177 ~t~g~l~~e~l~~Lk~aG~~~v~i~l-e~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
+++ .+.+.++.|.+.|++.+.++- +.. + +.-++.+.+.|.+|-. =-|+ -|.+|+...++
T Consensus 95 stp--fd~~svd~l~~~~v~~~KI~S~~~~-----------n----~~LL~~va~~gkPvil--stG~-~t~~Ei~~Av~ 154 (327)
T TIGR03586 95 SSP--FDETAVDFLESLDVPAYKIASFEIT-----------D----LPLIRYVAKTGKPIIM--STGI-ATLEEIQEAVE 154 (327)
T ss_pred Ecc--CCHHHHHHHHHcCCCEEEECCcccc-----------C----HHHHHHHHhcCCcEEE--ECCC-CCHHHHHHHHH
Confidence 654 567888888888888777631 110 1 2345555666766321 1233 48999999999
Q ss_pred HHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc---
Q 016605 256 TLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 256 ~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
++.+-| +.+.+-.+....+| ++ ...--++.+...+..++ ..+-++. . +.+......+...||+-+
T Consensus 155 ~i~~~g-~~~i~LlhC~s~YP-~~-------~~~~nL~~i~~lk~~f~-~pVG~SD-H-t~G~~~~~aAva~GA~iIEkH 222 (327)
T TIGR03586 155 ACREAG-CKDLVLLKCTSSYP-AP-------LEDANLRTIPDLAERFN-VPVGLSD-H-TLGILAPVAAVALGACVIEKH 222 (327)
T ss_pred HHHHCC-CCcEEEEecCCCCC-CC-------cccCCHHHHHHHHHHhC-CCEEeeC-C-CCchHHHHHHHHcCCCEEEeC
Confidence 998776 22323223222222 11 11222445556665553 2232321 1 122344566778899844
Q ss_pred ccCCc-c---ccCCCCChhHHHHHHHH
Q 016605 333 FTGEK-L---LTTPNNDFDADQLMFKV 355 (386)
Q Consensus 333 ~~g~~-~---~t~~~~~~~~~~~~i~~ 355 (386)
++-++ . ......++++...|+++
T Consensus 223 ~tld~~l~G~D~~~Sl~p~e~~~lv~~ 249 (327)
T TIGR03586 223 FTLDRSDGGVDSAFSLEPDEFKALVKE 249 (327)
T ss_pred CChhhcCCCCChhccCCHHHHHHHHHH
Confidence 11111 1 12234566666555543
|
|
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
Probab=84.00 E-value=13 Score=35.61 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCcEEEEecccCCCCCChhhH-----HHHHHHHHHHhhcCc-EE-EEecCCCCHHHHHHHHHhccCeeecc
Q 016605 129 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 129 ~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~-----~~l~~~i~~ik~~g~-~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
+.++...+.|++.+.+......... |..+ +++.++++.+++.|. .+ .-..|. ....+..+++.|++.++++
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~is-p~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~-~~~~~~~l~~~g~d~~~~~ 263 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLIS-PEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN-TTPILDDLADLGADVLSVD 263 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS--HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH-G-GGHHHHHTSS-SEEEE-
T ss_pred HHHHHHHHhCCCcccccccccCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc-hHHHHHHHHhcCCCEEEEc
Confidence 3444556788887766542222222 3333 557777777887776 54 344565 3458999999999988763
|
URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A .... |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=10 Score=34.49 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHH-cCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 130 AAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 130 ~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.++.+.+ .|++.+++.--.....+.+.+ .++|+++. ..++++.+--|..+.|.++++.++|++++.++-.+.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n----~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHARE----FDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcch----HHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4555566 589998875321111233333 44444443 346788888899999999999999999999877665
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.74 E-value=9.2 Score=35.03 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
+.++.++.+.+.|++.+++.--.....|.+.++ ++++++.+.-.++.+--|..+.+.++.+.++|++++.++-.++
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~----~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENL----PVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchH----HHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 445566677778999998863221112333343 4444443222467778899999999999999999998876665
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.56 E-value=46 Score=32.59 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhhcCcEEEEecC-CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 016605 157 NFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 235 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~i~~t~g-~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v 235 (386)
..+.+.++++.+++.++.+.+... ....+.++.+.++|++.+.+..-+.+..|. +...++.... +.+++.++++
T Consensus 116 ~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~--~~~~~~~~i~---~~ik~~~ipV 190 (368)
T PRK08649 116 KPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHV--SKEGEPLNLK---EFIYELDVPV 190 (368)
T ss_pred CHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhcc--CCcCCHHHHH---HHHHHCCCCE
Confidence 346677888888875555433222 235788999999999999986544322111 1112465544 4444556664
Q ss_pred eEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC----CC-CCCCCCCHHHHHHHHHHHHHhCCCc----c
Q 016605 236 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT----PL-QDQKPVEIWEMIRMIATARIVMPKA----M 306 (386)
Q Consensus 236 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT----~l-~~~~~~s~~e~~~~~a~~R~~lp~~----~ 306 (386)
|.|-.-|.++..+.++ .| ++.|-+. .-| |+ +. .....+....+.+..+.++.++... .
T Consensus 191 ----IaG~V~t~e~A~~l~~----aG--AD~V~VG-~G~--Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~v 257 (368)
T PRK08649 191 ----IVGGCVTYTTALHLMR----TG--AAGVLVG-IGP--GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYV 257 (368)
T ss_pred ----EEeCCCCHHHHHHHHH----cC--CCEEEEC-CCC--CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 3355557776666553 54 6666443 222 31 11 1111122222233333334333221 1
Q ss_pred eeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 307 VRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 307 i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
.-+..|-+....+. ..+|.+||+.++.|..+..+
T Consensus 258 pVIAdGGI~~~~di-akAlalGAd~Vm~Gs~fa~t 291 (368)
T PRK08649 258 HVIADGGIGTSGDI-AKAIACGADAVMLGSPLARA 291 (368)
T ss_pred eEEEeCCCCCHHHH-HHHHHcCCCeecccchhccc
Confidence 22344445444454 78899999999888765543
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.19 E-value=41 Score=31.58 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc-cCCCCCChhhHHHHHHHHHHH-hhcCcEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAA-WRDTIGRKTNFNQILEYVKDI-RDMGMEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g-~~~~~ge~~~~~~l~~~i~~i-k~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
.+.|.+...++.+.+.+.. +.|+.. +...+ ...+.+..+++.. ++..++++++... .+.+.++...++|+++|
T Consensus 26 ~n~e~~~avi~aAe~~~~P-vii~~~~~~~~~---~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsV 101 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSP-IILQIAEVRLNH---SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSV 101 (281)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEcCcchhcc---CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 4567777777777777754 445432 11111 2345555555544 3556777766544 47888999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE-eec--------CCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-IGL--------GEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i-~Gl--------get~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
.+.-...+. ....+...+..+.+++.|+.+...+. +|- |.+..+..+..++.++.| +|.+.+
T Consensus 102 m~d~s~~~~-------~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg--~DyLAv 172 (281)
T PRK06806 102 MFDGSHLPL-------EENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD--VDALAV 172 (281)
T ss_pred EEcCCCCCH-------HHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC--CCEEEE
Confidence 885433310 01233445667778889988765432 230 111234455556666565 677777
Q ss_pred --eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccc
Q 016605 270 --NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF 333 (386)
Q Consensus 270 --~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~ 333 (386)
.+..+ +. ...+....+.+.++.+.. -.| .+-+ |--++..+.-...+.+|++.+-
T Consensus 173 aiG~~hg---~~-~~~~~l~~~~L~~i~~~~--~iP--lV~h--G~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 173 AIGNAHG---MY-NGDPNLRFDRLQEINDVV--HIP--LVLH--GGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred ccCCCCC---CC-CCCCccCHHHHHHHHHhc--CCC--EEEE--CCCCCCHHHHHHHHHcCCcEEE
Confidence 44443 22 123445555433333321 112 1111 2123444444667889999883
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.86 E-value=30 Score=31.87 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-----hhHHHHHHHHHHH-hhcCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-----~~~~~l~~~i~~i-k~~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
+.|.+++.++..++.|+. ++..|.+.|-. .| ...+ -++.+.++ ++.|+.+.++. .+.+.++.+.+ .+|
T Consensus 27 s~e~~~~~a~~~~~~g~~-~~r~g~~kpRt-s~~sf~G~G~~-gl~~L~~~~~~~Gl~~~Tev--~d~~~v~~~~e-~vd 100 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYN-YFRGGAYKPRT-SAASFQGLGLQ-GIRYLHEVCQEFGLLSVSEI--MSERQLEEAYD-YLD 100 (250)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEecccCCCC-CCcccCCCCHH-HHHHHHHHHHHcCCCEEEee--CCHHHHHHHHh-cCC
Confidence 678999999999999984 55666554311 11 1224 34444444 46799876654 67889999988 599
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 276 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~ 276 (386)
.+.++--.. .+ .+-++.+.+.|.+|.. =-|..-+.+|+...++.+..-| + ..+.+. ..
T Consensus 101 ilqIgs~~~----------~n----~~LL~~va~tgkPVil--k~G~~~t~~e~~~A~e~i~~~G-n-~~i~L~----eR 158 (250)
T PRK13397 101 VIQVGARNM----------QN----FEFLKTLSHIDKPILF--KRGLMATIEEYLGALSYLQDTG-K-SNIILC----ER 158 (250)
T ss_pred EEEECcccc----------cC----HHHHHHHHccCCeEEE--eCCCCCCHHHHHHHHHHHHHcC-C-CeEEEE----cc
Confidence 888853221 11 2344555555655322 1233358999999999998876 2 222221 11
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-Ccceeec--CcccccChhHHHhhhhcCccccccCCcc--c--cC---CCCCh
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLS--AGRVRFSMPEQALCFLAGANSIFTGEKL--L--TT---PNNDF 346 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~--~g~~~~~~~~~~~~l~~Gan~~~~g~~~--~--t~---~~~~~ 346 (386)
|+.-.+.+.-..-+ ++.+...+..+. ..++..+ .|.-.+.+.....++.+||+.++.+.-+ . .+ ...++
T Consensus 159 g~~~Y~~~~~n~~d-l~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~ 237 (250)
T PRK13397 159 GVRGYDVETRNMLD-IMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDY 237 (250)
T ss_pred ccCCCCCccccccC-HHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCH
Confidence 33111111000111 222333443222 1111111 2322233466678889999988654201 1 12 22577
Q ss_pred hHHHHHHHHc
Q 016605 347 DADQLMFKVL 356 (386)
Q Consensus 347 ~~~~~~i~~~ 356 (386)
++..++++++
T Consensus 238 ~~l~~l~~~~ 247 (250)
T PRK13397 238 KQLEQLGQEL 247 (250)
T ss_pred HHHHHHHHHh
Confidence 7777777765
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=82.85 E-value=31 Score=31.09 Aligned_cols=102 Identities=16% Similarity=0.036 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhhcCcEE--EEecCC------CCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHH
Q 016605 157 NFNQILEYVKDIRDMGMEV--CCTLGM------LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKH 227 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~i--~~t~g~------l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~ 227 (386)
..++++..++.+++.|+.+ .++.|+ -..+.++.|.+.-.|.+-+.+=.. +-+--...++-+.++.++.++.
T Consensus 134 sv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~ 213 (275)
T COG1856 134 SVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKY 213 (275)
T ss_pred cHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHH
Confidence 3466677777777777663 344332 256677888777777765433222 2111112245578888889988
Q ss_pred HHHcCC-eeeEeEEeecCCCHHHHHHHHHHHhcCC
Q 016605 228 VREAGI-NVCSGGIIGLGEAEEDRVGLLHTLATLP 261 (386)
Q Consensus 228 a~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~~l~ 261 (386)
|++.=- ++..+++=-.|+..-+ +=.++..++
T Consensus 214 AR~~f~~pv~iGCmrP~Ge~rvk---~d~~av~~g 245 (275)
T COG1856 214 ARKKFPNPVSIGCMRPRGEWRVK---LDKEAVLAG 245 (275)
T ss_pred HHHhCCCCeeEeecCcCchhHHH---HHHHHHHcC
Confidence 888621 5777777644665444 334444444
|
|
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Probab=82.75 E-value=46 Score=31.90 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCcEEEEecccC-CCCCChhhH-----HHHHHHHHHHhhcCcE-EEEecCCCCHHHHHHHHHhccCeee
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWR-DTIGRKTNF-----NQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~-~~~ge~~~~-----~~l~~~i~~ik~~g~~-i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
+.+.++...+.|+..+.+...+. .+.-.|..+ +.+.++++.+++.+.. +....|. +...+..+++.|++.++
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~-~~~~~~~l~~~g~d~ls 260 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGF-TQPILRDIANNGCFGFS 260 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCC-chhhHHHHHHhCCCEEe
Confidence 34444555678887766643221 111123222 4445666666655432 3333454 35578889999999877
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
+
T Consensus 261 ~ 261 (340)
T TIGR01463 261 V 261 (340)
T ss_pred e
Confidence 4
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.18 E-value=14 Score=37.69 Aligned_cols=101 Identities=15% Similarity=0.245 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-c--CcE--EEEe--cCCCCHHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GME--VCCT--LGMLEKHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~--g~~--i~~t--~g~l~~e~l~~Lk~aG 194 (386)
.+++.+++.++++.+.|++.++|- ++.| -..-..+.++++.+++ . +++ ++++ .|.-....+.. .++|
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~Ik----DtaG-ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laA-ieAG 225 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIK----DMAA-LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKA-IEAG 225 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----CCcc-CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHH-HHcC
Confidence 489999999999999999999883 2222 1233567777777774 3 344 3343 45444444444 4789
Q ss_pred cCeeecccCchHHHHhhhCCCC-CHHHHHHHHHHHHHcCCeee
Q 016605 195 LTAYNHNLDTSREFYSKIITTR-SYDERLETLKHVREAGINVC 236 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi~v~ 236 (386)
++.|..++.++.+ ++++ +.+..+.+++ ..|+.++
T Consensus 226 ad~vDtai~Glg~-----~aGn~atE~vv~~L~---~~g~~tg 260 (499)
T PRK12330 226 VDVVDTAISSMSL-----GPGHNPTESLVEMLE---GTGYTTK 260 (499)
T ss_pred CCEEEeecccccc-----cccchhHHHHHHHHH---hcCCCCC
Confidence 9999988877611 2233 4565555544 4565543
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.12 E-value=24 Score=31.83 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++..+.++.+.+.|++.+-++- ..|...+.+.++.+.+++..-++.+-.|+ ++.+.++...++|.+.+--
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 5889999999999999998876653 11334455555555554332245555555 7999999999999876542
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
|.-+. +.++.+++.|+.+-.+++ |..|+..-+ ++| .+.+.+++ ...+
T Consensus 98 -------------P~~~~----~v~~~~~~~~i~~iPG~~-----TpsEi~~A~----~~G--a~~vKlFP-----A~~~ 144 (222)
T PRK07114 98 -------------PLFNP----DIAKVCNRRKVPYSPGCG-----SLSEIGYAE----ELG--CEIVKLFP-----GSVY 144 (222)
T ss_pred -------------CCCCH----HHHHHHHHcCCCEeCCCC-----CHHHHHHHH----HCC--CCEEEECc-----cccc
Confidence 22122 566788888886444333 667765554 444 44555433 2111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
. ...+...+-.+|+..+ +.+|=++...+.-...|.+|+..+-.|.
T Consensus 145 ------G----~~~ikal~~p~p~i~~-~ptGGV~~~~~n~~~yl~aGa~avg~Gs 189 (222)
T PRK07114 145 ------G----PGFVKAIKGPMPWTKI-MPTGGVEPTEENLKKWFGAGVTCVGMGS 189 (222)
T ss_pred ------C----HHHHHHHhccCCCCeE-EeCCCCCcchhcHHHHHhCCCEEEEECh
Confidence 1 1234445556676322 2333344321223556668877774454
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=47 Score=31.25 Aligned_cols=190 Identities=14% Similarity=0.127 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecc-cCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAA-WRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g-~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
.+.+.+...++.+.+.+.. +.++.+ +... -..++.+..+++.+. +..+++.++... .+.+.+++-.++|+++|
T Consensus 26 ~n~e~~~avi~AAe~~~~P-vIl~~~~~~~~---~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSP-FIINIAEVHFK---YISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCC-EEEEeCcchhh---cCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEE
Confidence 4677777778887777754 444332 1111 124566777777665 567787776544 36788888888999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eEeEEeecCCC----------HHHHHHHHHHHhcCCCCCCe
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEA----------EEDRVGLLHTLATLPTHPES 266 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v--~~~~i~Glget----------~ed~~~~l~~l~~l~~~~~~ 266 (386)
.+.-...+ . ..+.+...+..+.++..|+.+ ..+.+-|-... ..+..+..+|+++.| ++.
T Consensus 102 m~D~S~l~-~------eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tg--vD~ 172 (286)
T PRK06801 102 MFDGSTLE-Y------EENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTG--IDA 172 (286)
T ss_pred EEcCCCCC-H------HHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHC--cCE
Confidence 88432221 0 012334456677788889865 33443222110 113355667777776 788
Q ss_pred EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 267 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 267 v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+.+..+ +..|.. ...+.+..+.+.++.. ..+-..+ + .|--++..+.-..+...|++.+
T Consensus 173 LAvaiG-t~Hg~y-~~~~~l~~e~l~~i~~----~~~~PLV-l-HGGSgi~~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 173 LAVAIG-NAHGKY-KGEPKLDFARLAAIHQ----QTGLPLV-L-HGGSGISDADFRRAIELGIHKI 230 (286)
T ss_pred EEeccC-CCCCCC-CCCCCCCHHHHHHHHH----hcCCCEE-E-ECCCCCCHHHHHHHHHcCCcEE
Confidence 877333 333322 2223455554333322 2221111 1 1112334444567788999887
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=81.30 E-value=25 Score=32.37 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhcCcE---EEEecCCCCHHHHHHHH
Q 016605 157 NFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELK 191 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~---i~~t~g~l~~e~l~~Lk 191 (386)
..+++.++++.+.+.|.. ++-|.|..+++.+..+.
T Consensus 137 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv 174 (259)
T cd07939 137 DPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELI 174 (259)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHH
Confidence 456666666666655543 23356666665555443
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=81.04 E-value=19 Score=34.34 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCC--CCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHH-HhccCeee
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK-KAGLTAYN 199 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~--~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk-~aG~~~v~ 199 (386)
.++..+.++.+.+.|++.+.+.+..... .|.+.. .+.++++|+ .++++..+.+..+.+.++.+. ..|+|.|.
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~----~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHIN----WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCccc----HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 3556777778888898888775532211 111112 256666764 467887777777888887765 57899998
Q ss_pred cccCch--HHHHhhhCC---CCCHHHHHHHHH
Q 016605 200 HNLDTS--REFYSKIIT---TRSYDERLETLK 226 (386)
Q Consensus 200 i~le~~--~~~~~~i~~---~~s~~~~l~~i~ 226 (386)
++=-.+ |.++..+.. ..+++++++.+.
T Consensus 223 iGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~ 254 (312)
T PRK10550 223 IGRGALNIPNLSRVVKYNEPRMPWPEVVALLQ 254 (312)
T ss_pred EcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHH
Confidence 865444 455555432 124555544443
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=80.63 E-value=12 Score=33.22 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
+.+++...++.+.+.|.+-|-..+|+.+. | ...+.+..+.+.++ ..+.+-..-|..+.+.+..|.++|.+++..
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~-~--at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPG-G--ATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCC-C--CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 56788888888888888877665554322 1 23333333333333 345566667777888888888888887643
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.51 E-value=16 Score=37.19 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
+++.+.++.+.+.|++.+++-... |. -..+.++++.+|+. ++.+.. -...+.+..+.|.++|+|.|-+++
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~----~~---~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH----GH---QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC----Cc---cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHHcCCCEEEECc
Confidence 456777888888999888774321 21 36788999999865 344433 123689999999999999998777
Q ss_pred Cch----HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHH
Q 016605 203 DTS----REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 255 (386)
Q Consensus 203 e~~----~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 255 (386)
-+. -..+..+.. ..+.-+.+..+.+++.|+++-+. |--.+..|+.+.+.
T Consensus 298 g~gsictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 298 GPGAMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cCCcccccccccCCch-hHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 552 111111111 24555566666666777664332 22246677776665
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=80.49 E-value=34 Score=31.28 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHHHcCCcEEEEecccCCC-------CCChhhHHHHHHHHHHHhhcCcEEEEec-CCCC--------HHHHHHHHHh
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDT-------IGRKTNFNQILEYVKDIRDMGMEVCCTL-GMLE--------KHQAIELKKA 193 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~-------~ge~~~~~~l~~~i~~ik~~g~~i~~t~-g~l~--------~e~l~~Lk~a 193 (386)
.++.+.+.|++.+.+.....++ .+.+..++.+.+.++.+++.|+++.++. .... .+.++.+.++
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA 158 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 3445556677776554322110 1112245677777777777777643332 1111 4555666667
Q ss_pred ccCeeec
Q 016605 194 GLTAYNH 200 (386)
Q Consensus 194 G~~~v~i 200 (386)
|++.+.+
T Consensus 159 g~~~i~l 165 (265)
T cd03174 159 GADEISL 165 (265)
T ss_pred CCCEEEe
Confidence 7777775
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=80.43 E-value=42 Score=30.01 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeeeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 185 HQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+.++.++++|+|.|.+++-.. ....+.-.+ ...++...+.++.+++. ++.+.+.+-.|.... ++..+.++.+.+
T Consensus 71 ~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~-~~~~~~~~~l~~ 149 (231)
T cd02801 71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE-EETLELAKALED 149 (231)
T ss_pred HHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc-hHHHHHHHHHHH
Confidence 355666677888877765443 222111111 12556666677776654 445555444433222 478888888888
Q ss_pred CCCCCCeEeeeee
Q 016605 260 LPTHPESVPINAL 272 (386)
Q Consensus 260 l~~~~~~v~~~~f 272 (386)
.| ++.+.++..
T Consensus 150 ~G--vd~i~v~~~ 160 (231)
T cd02801 150 AG--ASALTVHGR 160 (231)
T ss_pred hC--CCEEEECCC
Confidence 86 677766543
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=80.33 E-value=29 Score=27.92 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-E-EEecCCCCHHHHHHHHHhccCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i-~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+++++.+.+. +.+.+-+++.+.. ....+.+.++++.+++.+.+ + ..-.|...++..++|+++|++.+.
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLS------GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccc------hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 57888776655 4567777776521 23556777778888766442 2 223455567788999999988765
Q ss_pred c
Q 016605 200 H 200 (386)
Q Consensus 200 i 200 (386)
.
T Consensus 108 ~ 108 (122)
T cd02071 108 G 108 (122)
T ss_pred C
Confidence 4
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=80.25 E-value=7.1 Score=36.02 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec--ccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 016605 157 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH--NLDTS-REFYSKIITTRSYDERLETLKHVREAGI 233 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i--~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi 233 (386)
.|+.=.++|+..++.++- +..-..+++..+.|.+||+|.+.. ++-+. .- ...+..+.++..+.++.+.++-.
T Consensus 135 gy~~EVemi~~A~~~gl~--T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~---Ga~~~~sl~~a~~~~~~i~~aa~ 209 (268)
T PF09370_consen 135 GYDREVEMIRKAHEKGLF--TTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSI---GAKTALSLEEAAERIQEIFDAAR 209 (268)
T ss_dssp -HHHHHHHHHHHHHTT-E--E--EE-SHHHHHHHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCe--eeeeecCHHHHHHHHHcCCCEEEecCCccCCCCc---CccccCCHHHHHHHHHHHHHHHH
Confidence 345566777777777763 223347899999999999999875 44332 11 11124577877777777776654
Q ss_pred eeeEeEEe-ec---CCCHHHHHHHHHHHh
Q 016605 234 NVCSGGII-GL---GEAEEDRVGLLHTLA 258 (386)
Q Consensus 234 ~v~~~~i~-Gl---get~ed~~~~l~~l~ 258 (386)
.++-++|+ .+ -.+++|....++...
T Consensus 210 ~v~~dii~l~hGGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 210 AVNPDIIVLCHGGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp CC-TT-EEEEECTTB-SHHHHHHHHHH-T
T ss_pred HhCCCeEEEEeCCCCCCHHHHHHHHhcCC
Confidence 44444433 12 357777777766554
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=80.01 E-value=38 Score=32.32 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=70.3
Q ss_pred HHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 185 HQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+.++.++++|+|.|.++.-.. +..-+.-.+ ..+++...+.++.+++ .++++.+-+-.|..++..+..++++.+.+
T Consensus 79 ~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~ 158 (319)
T TIGR00737 79 EAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAED 158 (319)
T ss_pred HHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHH
Confidence 334445566777776655332 211111111 1245666667777665 36777666655654444566778888888
Q ss_pred CCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhh-hcCccccccCCc
Q 016605 260 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF-LAGANSIFTGEK 337 (386)
Q Consensus 260 l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l-~~Gan~~~~g~~ 337 (386)
.| ++.+.++.-.+.. ....+.. +..+...+...+- .+ +..|-+. +.......+ ..||+.++.|..
T Consensus 159 ~G--~d~i~vh~r~~~~-----~~~~~~~---~~~i~~i~~~~~i-pv-i~nGgI~-~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 159 AG--AQAVTLHGRTRAQ-----GYSGEAN---WDIIARVKQAVRI-PV-IGNGDIF-SPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred hC--CCEEEEEcccccc-----cCCCchh---HHHHHHHHHcCCC-cE-EEeCCCC-CHHHHHHHHHhhCCCEEEEChh
Confidence 86 6777775432211 1111112 3334444443331 11 2233232 223334555 578999977743
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 386 | ||||
| 1r30_A | 369 | The Crystal Structure Of Biotin Synthase, An S- Ade | 5e-96 | ||
| 3cix_A | 348 | X-ray Structure Of The [fefe]-hydrogenase Maturase | 2e-07 | ||
| 3ciw_A | 348 | X-Ray Structure Of The [fefe]-Hydrogenase Maturase | 2e-07 | ||
| 3iiz_A | 348 | X-Ray Structure Of The Fefe-Hydrogenase Maturase Hy | 2e-07 | ||
| 3t7v_A | 350 | Crystal Structure Of Methylornithine Synthase (Pylb | 1e-05 |
| >pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S- Adenosylmethionine-dependent Radical Enzyme Length = 369 | Back alignment and structure |
|
| >pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde From Thermotoga Maritima In Complex With Thiocyanate Length = 348 | Back alignment and structure |
|
| >pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima Length = 348 | Back alignment and structure |
|
| >pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From T. Maritima In Complex With S-Adenosyl-L-Methionine Length = 348 | Back alignment and structure |
|
| >pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb) Length = 350 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Length = 369 | Back alignment and structure |
|---|
Score = 536 bits (1382), Expect = 0.0
Identities = 178/329 (54%), Positives = 228/329 (69%), Gaps = 2/329 (0%)
Query: 49 PRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQ 108
R W+ + +++ P+LDLLF QVHR + R+VQ TLLSIKTG C EDC YCPQ
Sbjct: 26 HRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQ 85
Query: 109 SSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 168
SSRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ R + + + V+ +
Sbjct: 86 SSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHER--DMPYLEQMVQGV 143
Query: 169 RDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHV 228
+ MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ V
Sbjct: 144 KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV 203
Query: 229 REAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEI 288
R+AGI VCSGGI+GLGE +DR GLL LA LPT PESVPIN L+ VKGTPL D V+
Sbjct: 204 RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA 263
Query: 289 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDA 348
++ IR IA ARI+MP + VRLSAGR + + QA+CF+AGANSIF G KLLTTPN + D
Sbjct: 264 FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK 323
Query: 349 DQLMFKVLGLTPKAPSFHEGEANVSEAES 377
D +F+ LGL P+ + G+ +
Sbjct: 324 DLQLFRKLGLNPQQTAVLAGDNEQQQRLE 352
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Length = 350 | Back alignment and structure |
|---|
Score = 335 bits (860), Expect = e-114
Identities = 58/329 (17%), Positives = 133/329 (40%), Gaps = 28/329 (8%)
Query: 50 RHDWSKDDIK---SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYC 106
+ + +D++ S+ L+ L+ A+ R + V + C CS+C
Sbjct: 20 GYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCFIYFS-TYCKNQCSFC 78
Query: 107 PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166
+ R + +T + + + + K AG + + N+ +E V+
Sbjct: 79 YYNCRNEINRYR---LTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYE--DPNRFVELVQ 133
Query: 167 DIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLET 224
++ ++G+ + + G+++ ++ ++ G +T E Y K+ +S+D R+
Sbjct: 134 IVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNA 193
Query: 225 LKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284
+ ++ G V G + G+G E + L ++T P+ V + L +GTPL+ +
Sbjct: 194 RRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTN--DPDMVRVMTFLPQEGTPLEGFR 251
Query: 285 PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG--------- 335
+++I+ R++ PK ++ S + L AGAN + +
Sbjct: 252 DKSNLSELKIISVLRLMFPKRLIPASLDLE--GIDGMVLRLNAGANIVTSILPPDSQLEG 309
Query: 336 ----EKLLTTPNNDFDADQLMFKVLGLTP 360
++ L + D + +++G+ P
Sbjct: 310 VANYDRDLEERDRDIKSVVRRLEIMGMKP 338
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 | Back alignment and structure |
|---|
Score = 328 bits (841), Expect = e-111
Identities = 71/338 (21%), Positives = 139/338 (41%), Gaps = 30/338 (8%)
Query: 45 IREGPRHDWSKDDIK---SIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSE 101
+ + R +++++ +K SI D + LF A R + EV ++ + C +
Sbjct: 7 LEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRK 65
Query: 102 DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 161
+C YC R + +K + MT + +++ A+ A + G+ + + + I
Sbjct: 66 NCLYCGLR-RDNKNLK-RYRMTPEEIVERARLAVQFGAKTIVLQSGEDP----YXMPDVI 119
Query: 162 LEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDE 220
+ VK+I+ MG+ V +LG + + K+AG Y +T+ + K+ S++
Sbjct: 120 SDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFEN 179
Query: 221 RLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279
RL L ++E G +G ++GL G+ +D V L L + V I + TP
Sbjct: 180 RLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGPFIPHPDTP 237
Query: 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG---- 335
L ++K + ++M+A RI++P + + + + + GAN I
Sbjct: 238 LANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPS 297
Query: 336 ----------EKLLTTPNND--FDADQLMFKVLGLTPK 361
K+ + M ++LG P
Sbjct: 298 PYRQLYQLYPGKICVFEKDTACIPCVMKMIELLGRKPG 335
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 5e-09
Identities = 47/384 (12%), Positives = 104/384 (27%), Gaps = 117/384 (30%)
Query: 4 FRSLLRSQRSL-------SLRPSKKFLALHSSCSCYSASAAAIEAERTIREGPRHDWSKD 56
F +LL Q + LR + KFL + I+ E+ + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLM------------SPIKTEQRQPSMMTRMYIEQ 115
Query: 57 DIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKT---------GGCSEDCSYCP 107
+ D+ V V R + +++Q LL ++ G
Sbjct: 116 RDRLYNDNQVFAKYN----VSRL-QPYLKLRQA-LLELRPAKNVLIDGVLGS-------- 161
Query: 108 QSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 167
G+ + D + + + W + + +LE ++
Sbjct: 162 ----------GKTWVALDVCLSYKVQ------CKMDFKIFWL-NLKNCNSPETVLEMLQK 204
Query: 168 IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKH 227
+ + + + + + +++ ++ Y+ L L +
Sbjct: 205 L--------LYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 228 VREAGI----NV-C-------SGGII-GLGEAEEDRVGLLHTLATLPTHPES-------- 266
V+ A N+ C + L A + L H TL T E
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYL 311
Query: 267 -VPINAL--LAVKGTPL-------QDQKPVEIWEMIRMIATARI--VMPKAMVRLSAGRV 314
L + P + + W+ + + ++ ++ ++ L
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 315 R-----FSM-------PEQALCFL 326
R S+ P L +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLI 395
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 2e-04
Identities = 25/189 (13%), Positives = 59/189 (31%), Gaps = 22/189 (11%)
Query: 70 LFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTK-DAVM 128
L G ++ +C ++ C+ +C +C + G + + ++
Sbjct: 52 LTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIV 111
Query: 129 QAAQKAKEAGSTRFCM---------------GAAWRDTIGRKTNFNQILEYVKDIRDMGM 173
+ + KA+ + A G + + + V++ G
Sbjct: 112 EESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGF 171
Query: 174 EVC-CTLGML-EKHQAIELKKAGLTAYNHNLDT-SREFYSKIITTRSYD--ER-LETLKH 227
T G + E+ + + + T ++ E Y+ + D ER L L+
Sbjct: 172 TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLEL 231
Query: 228 VREAGINVC 236
+R+
Sbjct: 232 MRDLPTRTV 240
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 100.0 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 100.0 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 100.0 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.91 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.87 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.86 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.81 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.8 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.74 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.67 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.54 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 99.33 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 98.52 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 98.37 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 98.33 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 98.19 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 98.18 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 98.07 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 97.78 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 97.73 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 97.57 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 97.48 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 97.4 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 97.22 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 97.21 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 97.15 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 97.08 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.84 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 96.67 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 96.41 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 95.71 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 95.64 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 95.51 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 95.49 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 95.28 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 95.22 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 95.17 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 95.15 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 95.15 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 94.82 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 94.71 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 94.52 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 94.45 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 94.38 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 94.33 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 94.16 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 94.01 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 93.91 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 93.48 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 93.18 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 93.17 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 93.07 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 92.89 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 92.67 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 92.55 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 92.48 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 92.46 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 92.44 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 92.16 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 91.86 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 91.84 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 91.65 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 91.38 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 91.37 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 90.9 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 90.48 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 90.39 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 90.35 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 90.32 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 90.3 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 90.21 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 90.09 | |
| 3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa | 89.93 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 89.67 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 89.55 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 89.43 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 89.41 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 89.16 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 89.02 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 88.8 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 88.57 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 88.0 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 87.32 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 87.12 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 86.49 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 86.14 | |
| 3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; st | 85.8 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 85.57 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 85.45 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 85.43 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 83.49 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 83.2 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 83.0 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 82.76 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 82.44 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 82.32 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 82.28 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 81.92 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 81.9 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 81.76 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 81.58 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 81.39 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 81.18 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 80.91 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 80.84 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 80.36 |
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=369.01 Aligned_cols=318 Identities=18% Similarity=0.309 Sum_probs=276.9
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHhcCCC---hHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCC
Q 016605 37 AAIEAERTIREGPRHDWSKDDIKSIYDSP---VLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYD 113 (386)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~---~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~ 113 (386)
+.+|.+|+.+ +++||++|++.||+.+ ..+.+..+|+..|++++|+.++++.++++ |++|+.+|.||+++...
T Consensus 10 ~~~i~~k~~~---~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~~~i~~-t~~C~~~C~fC~~~~~~- 84 (350)
T 3t7v_A 10 FDSLGDKVIE---GYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCFIYF-STYCKNQCSFCYYNCRN- 84 (350)
T ss_dssp --CHHHHHHT---TCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE-ECCCCCCCTTCTTCTTS-
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHCCCEEEEEEeeec-CCCcCCCCCcCCCcCcC-
Confidence 4678999999 9999999999999853 45667777777888888999999999998 99999999999997543
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhh---HHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHH
Q 016605 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIE 189 (386)
Q Consensus 114 ~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~---~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~ 189 (386)
...++. ++++||++.++.+.+.|++.|+++||.. |.. .+++.++++.+++ .++.+++++|.++++.++.
T Consensus 85 -~~~~~~-ls~eei~~~~~~~~~~G~~~i~l~gGe~-----p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~ 157 (350)
T 3t7v_A 85 -EINRYR-LTMEEIKETCKTLKGAGFHMVDLTMGED-----PYYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLK 157 (350)
T ss_dssp -CCCCCB-CCHHHHHHHHHHHTTSCCSEEEEEECCC-----HHHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHH
T ss_pred -CCCcee-CCHHHHHHHHHHHHHCCCCEEEEeeCCC-----CccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHH
Confidence 334455 8999999999999999999999977542 332 4788999999984 5788888999999999999
Q ss_pred HHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEe
Q 016605 190 LKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 268 (386)
Q Consensus 190 Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 268 (386)
|+++|++++.+++|++ +++|+.+++++++++++++++.++++|+.+++++|+|+|||.+|+.++++++++++ +++++
T Consensus 158 L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~--~~~v~ 235 (350)
T 3t7v_A 158 AREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTND--PDMVR 235 (350)
T ss_dssp HHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTC--CSEEE
T ss_pred HHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCC--CCEEE
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999996 88999
Q ss_pred eeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccc---cCCc----cccC
Q 016605 269 INALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF---TGEK----LLTT 341 (386)
Q Consensus 269 ~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~---~g~~----~~t~ 341 (386)
+++|+|.|||++.+.++++.++++++++++|+++|+. +|++.|...+.+..+.+|.+|||+++ ..+. ....
T Consensus 236 ~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~--~I~a~~~~~g~~~~~~~l~~Gan~~~~~~~~~~~~ag~~~~ 313 (350)
T 3t7v_A 236 VMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKR--LIPASLDLEGIDGMVLRLNAGANIVTSILPPDSQLEGVANY 313 (350)
T ss_dssp EEECCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTS--BCEEEHHHHHHHHHHHHHHTTCCEEEEECCSSCCCCCSSCT
T ss_pred ecceeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCc--CccccccccChhHHHHHHhcCCceecCCCCCCCCCCCCCCC
Confidence 9999999999999988899999999999999999995 56667877766778999999999983 3331 1111
Q ss_pred ------CCCChhHHHHHHHHcCCCcCCCCCccccc
Q 016605 342 ------PNNDFDADQLMFKVLGLTPKAPSFHEGEA 370 (386)
Q Consensus 342 ------~~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 370 (386)
..++.+++.++|+++||+|++|++.|+..
T Consensus 314 ~~~~~~~~~~~~~~~~~i~~~G~~~~~r~~~y~~~ 348 (350)
T 3t7v_A 314 DRDLEERDRDIKSVVRRLEIMGMKPARQADFEAVL 348 (350)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHTCEECCHHHHHTTC
T ss_pred cccchhccCCHHHHHHHHHHcCCccccHHHHHHHh
Confidence 24789999999999999999999999875
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=362.61 Aligned_cols=318 Identities=55% Similarity=0.946 Sum_probs=281.7
Q ss_pred hcCCCCCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHH
Q 016605 46 REGPRHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKD 125 (386)
Q Consensus 46 ~~~~~~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~e 125 (386)
.+.+.++||.+|+..|++.|..+++..|..++++++.|+++.++.++++.|++|+++|.||+++.....+..+++.++++
T Consensus 23 ~~~~~~~ls~~e~~~l~~~~~~~L~~~A~~~~~~~~~~~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~e 102 (369)
T 1r30_A 23 GSAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVE 102 (369)
T ss_dssp ----CCCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHH
T ss_pred cccccCCCCHHHHHHHHhccHHHHHHHHHHHHHHhcCCCEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHH
Confidence 34457889999999999988888887777776666657889888888866999999999999886432233345668999
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
+|++.++.+.+.|++.|+++||+.. +.+..++++.++++.+++.++++++++|.++++.++.|+++|++++++++|+.
T Consensus 103 ei~~~~~~~~~~g~~~i~~~gg~~~--p~~~~~~~l~~ll~~ik~~g~~i~~t~G~l~~e~l~~L~~aGvd~v~i~les~ 180 (369)
T 1r30_A 103 QVLESARKAKAAGSTRFCMGAAWKN--PHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTS 180 (369)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCSS--CCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSC
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCCC--CCcCCHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHCCCCEEeecCcCC
Confidence 9999999998899999999876522 22356789999999999889998889999999999999999999999999998
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCC
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP 285 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~ 285 (386)
++.|+++++++++++++++++.++++|+.+++++|+|+|||.+++.++++++++++.++++++++.|+|.|||++.+.++
T Consensus 181 ~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~ 260 (369)
T 1r30_A 181 PEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDD 260 (369)
T ss_dssp HHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCC
Confidence 88999999989999999999999999999999999999999999999999999996447899999999999999998888
Q ss_pred CCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCCC
Q 016605 286 VEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSF 365 (386)
Q Consensus 286 ~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~~ 365 (386)
++.++++++++++|.++|+..++++++|.++++..++.+|.+|||+++.|+++.++.+++++++.++|+++|+.|.+|..
T Consensus 261 ~~~~~~~~~~~~~r~~l~~~~i~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~g~~~~~~~~ 340 (369)
T 1r30_A 261 VDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAV 340 (369)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCCCC-
T ss_pred CCHHHHHHHHHHHHHhCCCCceEeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHHcCCCeecccc
Confidence 99999999999999999998899999999988888899999999999999989999999999999999999999999975
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=326.75 Aligned_cols=314 Identities=22% Similarity=0.314 Sum_probs=271.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHhcCCCh---HHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCC
Q 016605 37 AAIEAERTIREGPRHDWSKDDIKSIYDSPV---LDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYD 113 (386)
Q Consensus 37 ~~~~~~~~~~~~~~~~ls~ee~~~l~~~~~---~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~ 113 (386)
+.++.+|+.+ ++||++|+..|++.++ .+.+..+|+..|++++|++++++.++++ |++||++|.||+++...
T Consensus 3 ~~~i~~k~~~----~~l~~~e~~~ll~~~~~~~~~~l~~~A~~ir~~~~g~~v~~~~~i~~-t~~C~~~C~fC~~~~~~- 76 (348)
T 3iix_A 3 GREILEKLER----REFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYCGLRRDN- 76 (348)
T ss_dssp HHHHHHHHHT----TCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEE-ECCCSCCCTTCTTCTTC-
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEEEeEe-cCCcCCcCccCCCCCCC-
Confidence 4677888776 5799999999997643 4456777777777778999999999999 99999999999987542
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 114 TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 114 ~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
....++. +++++|++.++.+.+.|++.|+++||..+. ...+++.++++.+++.++.+.+++|.++++.++.|+++
T Consensus 77 ~~~~~~~-ls~eei~~~i~~~~~~g~~~i~~~gGe~p~----~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~a 151 (348)
T 3iix_A 77 KNLKRYR-MTPEEIVERARLAVQFGAKTIVLQSGEDPY----XMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEA 151 (348)
T ss_dssp CSSCCCB-CCHHHHHHHHHHHHHTTCSEEEEEESCCGG----GTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHH
T ss_pred CCcCcee-CCHHHHHHHHHHHHHCCCCEEEEEeCCCCC----ccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHh
Confidence 2334444 899999999999999999999998754221 23388999999999778888889999999999999999
Q ss_pred ccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 194 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 194 G~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
|++++.+++|+. +++|+.+++++++++++++++.++++|+.+++++|+|+ |+|.+++.++++++++++ ++.+.+++
T Consensus 152 g~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~--~~~i~i~~ 229 (348)
T 3iix_A 152 GADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGP 229 (348)
T ss_dssp TCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHT--CSEECCEE
T ss_pred CCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcC--CCEEeeee
Confidence 999999999999 99999999989999999999999999999999999999 999999999999999996 88999999
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccC----C----------c
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG----E----------K 337 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g----~----------~ 337 (386)
|+|.|||++.+.++++.++++++++++|+++|+..|+++++|..+++..+..+|.+|||++++. . +
T Consensus 230 ~~p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~~~~~~~~~ 309 (348)
T 3iix_A 230 FIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGK 309 (348)
T ss_dssp CCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGGGCCSSSCC
T ss_pred eecCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCchhcchhhhcCHHHHHHHHhcCCcEEeCCCCchhcccccccCCCC
Confidence 9999999999988999999999999999999998888888898888888999999999999732 0 1
Q ss_pred ccc--CCCCChhHHHHHHHHcCCCcCCC
Q 016605 338 LLT--TPNNDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 338 ~~t--~~~~~~~~~~~~i~~~G~~p~~~ 363 (386)
..+ ....+.++...+|+++|++|...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 337 (348)
T 3iix_A 310 ICVFEKDTACIPCVMKMIELLGRKPGRD 337 (348)
T ss_dssp TTTTSCTTCHHHHHHHHHHHTTCEECSS
T ss_pred cccCCCchhhHHHHHHHHHHcCCEeCCC
Confidence 111 12346788999999999999875
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=196.73 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=140.7
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChh-hHHHHHHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 168 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~-~~~~l~~~i~~i 168 (386)
..+++ +++||++|.||.++... + +.+.+++++|+++++.+.+.|++.+.+++.....+|.+. ..+.+.++++.+
T Consensus 6 ~~v~i-s~GC~~~C~fC~~~~~~--g--~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 6 AYVKI-SDGCDRGCTFCSIPSFK--G--SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp EEEES-BCCC---------------C--CCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH
T ss_pred EEEEE-CCCCCCcCccCCccccC--C--CceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHH
Confidence 34566 89999999999887432 2 234579999999999999999999998875333333211 124567777777
Q ss_pred hhc-CcE-EE---EecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeEe
Q 016605 169 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSG 238 (386)
Q Consensus 169 k~~-g~~-i~---~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~--~Gi~v~~~ 238 (386)
++. ++. +. +++..++++.++.|+++| ++++.+++|+. +++++.+++++++++++++++.+++ .|+.+.++
T Consensus 81 ~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~ 160 (304)
T 2qgq_A 81 NSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTS 160 (304)
T ss_dssp HTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HhcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 654 553 32 234568999999999999 99999999999 9999999999999999999999999 69999999
Q ss_pred EEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 016605 239 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 294 (386)
Q Consensus 239 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~-~~s~~e~~~~ 294 (386)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++...+ .++.+...+.
T Consensus 161 ~IvG~PgEt~ed~~~t~~~l~~l~--~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r 216 (304)
T 2qgq_A 161 IIVGFPGETEEDFEELKQFVEEIQ--FDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRR 216 (304)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCC-----------CCCHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEEeeCCCCChhHhCcCCCCHHHHHHH
Confidence 99999 999999999999999996 889999999999999987665 4565544433
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=180.15 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=162.2
Q ss_pred CCCeeEEEEeeeecCCCCCcCCCCCCCCCCC---CCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhH
Q 016605 82 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRY---DTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 158 (386)
Q Consensus 82 ~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~---~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~ 158 (386)
+|..+.. ..+++ |++||++|.||...... .........++.+++.+.++.+.+.|++.|.++| |||+..
T Consensus 9 ~gr~~~~-l~i~~-T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tG------GEPll~ 80 (340)
T 1tv8_A 9 LGRPIRD-LRLSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG------GEPLMR 80 (340)
T ss_dssp TSCBCCE-EEEEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES------SCGGGS
T ss_pred CCCccCe-EEEEe-CCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeC------CCccch
Confidence 3555543 23566 99999999999875411 0111233459999999999999999999998876 467666
Q ss_pred HHHHHHHHHHhhcCc--EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCC-CHHHHHHHHHHHHHcCC
Q 016605 159 NQILEYVKDIRDMGM--EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGI 233 (386)
Q Consensus 159 ~~l~~~i~~ik~~g~--~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~-s~~~~l~~i~~a~~~Gi 233 (386)
+++.++++.+++.+. .+ .+|||.+..+.++.|+++|++.|.+++|+. ++.|+.+++.+ ++++++++|+.++++|+
T Consensus 81 ~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~ 160 (340)
T 1tv8_A 81 RDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL 160 (340)
T ss_dssp TTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 778899999887643 43 568898777899999999999999999999 89999998877 99999999999999999
Q ss_pred eeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC-CCCCCCCHHHHHHHHH
Q 016605 234 NVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-QDQKPVEIWEMIRMIA 296 (386)
Q Consensus 234 ~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l-~~~~~~s~~e~~~~~a 296 (386)
.+.+++++..++|.+++.++++++++++ ++ +.+..|+|.++++. .....++.+++++.+.
T Consensus 161 ~v~i~~vv~~g~n~~ei~~~~~~~~~~g--~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~ 221 (340)
T 1tv8_A 161 NVKVNVVIQKGINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE 221 (340)
T ss_dssp EEEEEEEECTTTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHH
T ss_pred CEEEEEEEeCCCCHHHHHHHHHHHHhcC--Ce-EEEEEeeEcCCCccchhhcCCCHHHHHHHHH
Confidence 9888888855889999999999999997 54 77888999987753 2234567777766654
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=192.17 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=155.4
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc----CCcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~----G~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
.+++ ++|+.+|.||.+....... ........+.+.++++.+.+. ++..++++|| +++.. ..+.+.++++
T Consensus 56 YihI--pfC~~~C~yC~~~~~~~~~-~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGG-tpt~l---~~~~l~~ll~ 128 (457)
T 1olt_A 56 YVHI--PFCHKLCYFCGCNKIVTRQ-QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGG-TPTYL---NKAQISRLMK 128 (457)
T ss_dssp EEEE--CEESSCCTTCCSSCEECSC-THHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEES-CGGGS---CHHHHHHHHH
T ss_pred EEEc--CCCCCCCCCCCCceeccCC-cchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CcccC---CHHHHHHHHH
Confidence 3455 4799999999987532111 111112467777777766543 3566777664 44332 2355666666
Q ss_pred HHhhc-------CcEEEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeE
Q 016605 167 DIRDM-------GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 237 (386)
Q Consensus 167 ~ik~~-------g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~ 237 (386)
.+++. .+.+.++++.++++.++.|+++|++++++++|++ +++++.+++.+++++++++++.++++|+. +++
T Consensus 129 ~i~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~ 208 (457)
T 1olt_A 129 LLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNI 208 (457)
T ss_dssp HHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEE
T ss_pred HHHHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 66541 2335566778999999999999999999999999 99999999999999999999999999998 999
Q ss_pred eEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCC-----CCCCCHHHHHHHHHHHHHhC
Q 016605 238 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-----QKPVEIWEMIRMIATARIVM 302 (386)
Q Consensus 238 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~-----~~~~s~~e~~~~~a~~R~~l 302 (386)
++|+|+ |||.+++.++++++.+++ ++++.++.|.|.|+|+... ...++.++..+++..+...+
T Consensus 209 dlI~GlPget~e~~~~tl~~~~~l~--~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L 277 (457)
T 1olt_A 209 DLIYGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFL 277 (457)
T ss_dssp EEEESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhcC--cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHH
Confidence 999999 999999999999999996 8999999999999987542 23467788777777665544
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=169.49 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=154.3
Q ss_pred C-CCCCcCCCCCCCCCCCCCC-CcccCCCCHHHHHHHHHHHHHc------C--------------CcEEEEecccCCCCC
Q 016605 96 T-GGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA------G--------------STRFCMGAAWRDTIG 153 (386)
Q Consensus 96 t-~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~~------G--------------~~~v~l~~g~~~~~g 153 (386)
+ ++||++|.||........+ ....+.+++++|++.+..+... | ++.|.+.+| |
T Consensus 77 ~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sgg-----G 151 (342)
T 2yx0_A 77 VLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLS-----G 151 (342)
T ss_dssp CSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSS-----S
T ss_pred ChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCC-----C
Confidence 5 6999999999876321110 1133458999999877665321 2 456777644 4
Q ss_pred ChhhHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhc--cCeeecccCch-HHHHhhhCC---CCCHHHHHHHHH
Q 016605 154 RKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIIT---TRSYDERLETLK 226 (386)
Q Consensus 154 e~~~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG--~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~ 226 (386)
||+..+++.++++.+++.|+.+ ..|||.+ ++.++.|+++| ++.+.+++|+. ++.|+.+++ +.++++++++++
T Consensus 152 EPll~~~l~~ll~~~~~~g~~i~l~TNG~~-~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~ 230 (342)
T 2yx0_A 152 EPMLYPYMGDLVEEFHKRGFTTFIVTNGTI-PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLE 230 (342)
T ss_dssp CGGGSTTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHCCCcEEEEcCCCc-HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 5655567888888888888875 4578887 88999999988 99999999999 899999986 457999999999
Q ss_pred HHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC--CCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 016605 227 HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG--TPLQDQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 227 ~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g--T~l~~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
.+++.|+.+.+.+++..|+|.+++.++++++++++ ++.+.+.+|.|.+. +++.....++.+++.++...++..+|.
T Consensus 231 ~l~~~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~--~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~ 308 (342)
T 2yx0_A 231 LMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKAR--PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPG 308 (342)
T ss_dssp HHTTCSSEEEEEEEECTTTTCCCHHHHHHHHHHHC--CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTT
T ss_pred HHHhCCCCEEEEEEEECCccHHHHHHHHHHHHHcC--CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccC
Confidence 99999999998888866888888999999999986 88999888888764 344444577889999988888887765
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=157.24 Aligned_cols=194 Identities=16% Similarity=0.223 Sum_probs=148.8
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHc---CCcEEEEecccCCCCCChhhHHH-HHHHHHHHhhc
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRDM 171 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~---G~~~v~l~~g~~~~~ge~~~~~~-l~~~i~~ik~~ 171 (386)
|++||++|.||........ ...+.++++++.+.++.+.+. +...|.++| |||....+ +.++++.+++.
T Consensus 26 t~~Cn~~C~~C~~~~~~~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~G------GEP~l~~~~l~~l~~~~~~~ 97 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDT--HGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKKE 97 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCT--TCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE------SCGGGGHHHHHHHHHHHHTT
T ss_pred eCCCCCCCCCCCCchhccc--ccCccCCHHHHHHHHHHhhhhhcCCCCeEEEEC------CCcCCCHHHHHHHHHHHHHc
Confidence 7899999999987642211 123347999999998876653 357788877 35655555 68999999887
Q ss_pred CcEE-EEecCCC--CHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEe--ecCC
Q 016605 172 GMEV-CCTLGML--EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGE 245 (386)
Q Consensus 172 g~~i-~~t~g~l--~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~--Glge 245 (386)
|+.+ ..|||.+ +.+.++.|.++ ++.+.+++|+. ++.++.+++. ++++++++++.++++|+.+.+.+++ |.++
T Consensus 98 ~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~~v~i~~~~~~g~~~ 175 (245)
T 3c8f_A 98 GIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNVKVWIRYVVVPGWSD 175 (245)
T ss_dssp TCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTCCEEEEEEECTTTTC
T ss_pred CCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCCEEEEEEeecCCCCC
Confidence 8775 4578987 88999999988 89999999999 8999999764 4699999999999999987766555 3457
Q ss_pred CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC---------CCCCCCCCCHHHHHHHHHHHHH
Q 016605 246 AEEDRVGLLHTLATLPTHPESVPINALLAVKGT---------PLQDQKPVEIWEMIRMIATARI 300 (386)
Q Consensus 246 t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT---------~l~~~~~~s~~e~~~~~a~~R~ 300 (386)
+.+++.++++++++++. +..+.+.+|.|.+++ ++.+.++++.+++.++...++.
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (245)
T 3c8f_A 176 DDDSAHRLGEFTRDMGN-VEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQ 238 (245)
T ss_dssp CHHHHHHHHHHHHHHCC-EEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCC-CceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHh
Confidence 88999999999999962 377888888886643 3344567788887777766653
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-18 Score=160.06 Aligned_cols=197 Identities=16% Similarity=0.243 Sum_probs=129.7
Q ss_pred EeeeecC-CCCCcCCCCCCCCCCCCCC-----CcccCCCCHHHHHHHHHHHHH------cC---------------CcEE
Q 016605 90 TLLSIKT-GGCSEDCSYCPQSSRYDTG-----VKGQKLMTKDAVMQAAQKAKE------AG---------------STRF 142 (386)
Q Consensus 90 ~~i~i~t-~~C~~~C~fC~~~~~~~~~-----~~~~~~~s~eeI~~~~~~~~~------~G---------------~~~v 142 (386)
..+++ | .+||++|.||........+ ....+.++++++++.+..... .| .+.+
T Consensus 53 l~i~~-t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 53 IQCTP-SVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEES-CSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred EEecc-ChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 44566 7 7999999999865311111 112345899999987654422 12 3457
Q ss_pred EEecccCCCCCChhhHHHHHHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCC--CCH
Q 016605 143 CMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSY 218 (386)
Q Consensus 143 ~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~--~s~ 218 (386)
.+.+| |||+.++++.++++.+++.|+.+ ..|||.+ ++.++.| |++.+.+++|+. ++.|+.+++. .++
T Consensus 132 ~~s~g-----GEPll~~~l~~li~~~~~~g~~~~l~TNG~~-~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~~~~~ 202 (311)
T 2z2u_A 132 AISLS-----GEPTLYPYLDELIKIFHKNGFTTFVVSNGIL-TDVIEKI---EPTQLYISLDAYDLDSYRRICGGKKEYW 202 (311)
T ss_dssp EECSS-----SCGGGSTTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHC---CCSEEEEECCCSSTTTC----CCCHHHH
T ss_pred EEeCC-----cCccchhhHHHHHHHHHHCCCcEEEECCCCC-HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCccchH
Confidence 77643 46766677899999998888875 5678887 5655555 899999999999 8999999876 589
Q ss_pred HHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC--CCCCCCCHHHHHHHHH
Q 016605 219 DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL--QDQKPVEIWEMIRMIA 296 (386)
Q Consensus 219 ~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l--~~~~~~s~~e~~~~~a 296 (386)
++++++++.+++.| .+.+.+++..|.+. ++.++++++++++ ++.+.+.+|+|.++++. .....++.+++.+...
T Consensus 203 ~~v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~--~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~ 278 (311)
T 2z2u_A 203 ESILNTLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERAD--VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAK 278 (311)
T ss_dssp HHHHHHHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHHT--CSEEEEEECC------------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHcC--CCEEEEEeeEEccccccccccccCCCHHHHHHHHH
Confidence 99999999999999 77777666556666 8899999999986 88999999999987763 2345678888888777
Q ss_pred HHHH
Q 016605 297 TARI 300 (386)
Q Consensus 297 ~~R~ 300 (386)
.++.
T Consensus 279 ~l~~ 282 (311)
T 2z2u_A 279 MLDE 282 (311)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-15 Score=144.67 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=142.3
Q ss_pred CCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----------cCCcEEEEecccCCCCCChh-hHHHHHHH
Q 016605 96 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----------AGSTRFCMGAAWRDTIGRKT-NFNQILEY 164 (386)
Q Consensus 96 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----------~G~~~v~l~~g~~~~~ge~~-~~~~l~~~ 164 (386)
+.+||++|.||..... + ..+.++++||++.+..+.. .+++.|+|.|+ |||+ .++.+.++
T Consensus 122 q~GCnl~C~fC~tg~~---g--~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~Gg-----GEPLln~d~v~~~ 191 (404)
T 3rfa_A 122 QVGCALECKFCSTAQQ---G--FNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGM-----GEPLLNLNNVVPA 191 (404)
T ss_dssp EEECSSCCTTCGGGTT---C--EEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSS-----SCGGGCHHHHHHH
T ss_pred CCCCCCcCCCCCCCCC---C--CCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCC-----CCcccCHHHHHHH
Confidence 5689999999986532 2 1345899999998876653 24677888864 4664 45889999
Q ss_pred HHHHhh-cCc-----EE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHH-HHHcC
Q 016605 165 VKDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKH-VREAG 232 (386)
Q Consensus 165 i~~ik~-~g~-----~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~-a~~~G 232 (386)
++.+++ .|+ .+ ..|+|.+ +.+++|.+.+...+.+++++. ++.|+++.+ ..++++++++++. +.+.|
T Consensus 192 i~~lk~~~Gl~~s~r~itlsTnG~~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g 269 (404)
T 3rfa_A 192 MEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSN 269 (404)
T ss_dssp HHHHHSTTTTCCCGGGEEEEESCCH--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcCcCcCCCceEEECCCcH--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhC
Confidence 999986 476 44 4578976 457888888655678999999 899999885 4589999999954 56667
Q ss_pred C---eeeE--eEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 016605 233 I---NVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVM 302 (386)
Q Consensus 233 i---~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~l 302 (386)
. .+.+ .+|-|++++.+++.+++++++.++ ..+.+.+|+|+++.. .++++.+++.+...+++..-
T Consensus 270 ~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~---~~VnLIpynP~~~~~---~~~ps~e~i~~f~~iL~~~G 338 (404)
T 3rfa_A 270 ANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAP---YGRSSNSRIDRFSKVLMSYG 338 (404)
T ss_dssp TTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSC---EEEEEEECCCCTTCC---CCBCCHHHHHHHHHHHHHTT
T ss_pred CCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCC---CcEEEEeccCCCCCC---CCCCCHHHHHHHHHHHHHcC
Confidence 6 5554 455577899999999999999884 368888999987665 35678888777777666543
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-14 Score=136.96 Aligned_cols=187 Identities=16% Similarity=0.178 Sum_probs=131.3
Q ss_pred EeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH-cCCcEEEEecccCCCCCChhhHH--HHHHHHH
Q 016605 90 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFN--QILEYVK 166 (386)
Q Consensus 90 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~-~G~~~v~l~~g~~~~~ge~~~~~--~l~~~i~ 166 (386)
..+++ |++||.+|.||...... + .....++.+++.+.++.+.+ .|+..|.++|| +|+... .+.++++
T Consensus 117 v~l~v-T~~Cnl~C~yC~~~~~~--~-~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGG------EPll~~d~~L~~il~ 186 (416)
T 2a5h_A 117 VLLLI-TDMCSMYCRHCTRRRFA--G-QSDDSMPMERIDKAIDYIRNTPQVRDVLLSGG------DALLVSDETLEYIIA 186 (416)
T ss_dssp EEEEE-ESCCSSCCTTCTTTTTT--T-SSSSBCCHHHHHHHHHHHHTCTTCCEEEEEES------CTTSSCHHHHHHHHH
T ss_pred EEEec-CCCccccCcCCCCcccC--C-CccCCCCHHHHHHHHHHHHhcCCCcEEEEECC------CCCCCCHHHHHHHHH
Confidence 34666 99999999999765322 1 12235899999999998887 68989988874 343333 3777777
Q ss_pred HHhhc-CcE-E-EEecC------CCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 167 DIRDM-GME-V-CCTLG------MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 167 ~ik~~-g~~-i-~~t~g------~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
.+++. ++. + ..|+| .++++.++.|+++ +.+.+++++. + +.+. ++++++++.++++|+.+.
T Consensus 187 ~l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~-----~~v~~ai~~L~~aGi~v~ 256 (416)
T 2a5h_A 187 KLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT-----EESTRACQLLADAGVPLG 256 (416)
T ss_dssp HHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC-----HHHHHHHHHHHHTTCCEE
T ss_pred HHHhcCCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh-----HHHHHHHHHHHHcCCEEE
Confidence 77765 442 3 35566 4679999999988 7788888876 4 2332 899999999999999876
Q ss_pred EeEEe--ecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 237 SGGII--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 237 ~~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
...++ |++++.+++.++++++.+++ +....++.+.+.+|+++.. .+..+..+++..++..
T Consensus 257 i~~vll~GvNd~~e~l~~l~~~l~~lg--v~~~~i~~~~~~~g~~~~~---~~~~~~~eil~~l~~~ 318 (416)
T 2a5h_A 257 NQSVLLRGVNDCVHVMKELVNKLVKIR--VRPYYIYQCDLSLGLEHFR---TPVSKGIEIIEGLRGH 318 (416)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHHHTT--EEEEEEECCCCBTTCGGGC---CCHHHHHHHHHTTBTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEeecCCCCCccccc---CCcccHHHHHHHHHHH
Confidence 66555 67888889999999999996 4444444333356776432 3455555555555443
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-11 Score=104.56 Aligned_cols=151 Identities=13% Similarity=0.056 Sum_probs=115.0
Q ss_pred EEEEecccCCCCCChhhHHHH-HHHHHHHhhcCcEE-EEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCC
Q 016605 141 RFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRS 217 (386)
Q Consensus 141 ~v~l~~g~~~~~ge~~~~~~l-~~~i~~ik~~g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s 217 (386)
.|.++| |||+...++ .++++.+++.|+.+ ..|||.++++.++.|.++ ++.+.+++++. ++.|+++++ .+
T Consensus 6 ~v~~tG------GEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g-~~ 77 (182)
T 3can_A 6 GVTFCG------GEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD-VP 77 (182)
T ss_dssp CEEECS------STGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-SC
T ss_pred EEEEEc------ccccCCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhC-CC
Confidence 455655 578777666 59999999888875 567999999999999988 89999999999 899999875 45
Q ss_pred HHHHHHHHHHHHHcCCeeeEeEEe--ecCCCHHHHHHHHHHHhcC-CCCC-CeEeeeeeeecCCCC---------CCCCC
Q 016605 218 YDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATL-PTHP-ESVPINALLAVKGTP---------LQDQK 284 (386)
Q Consensus 218 ~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l-~~~~-~~v~~~~f~P~~gT~---------l~~~~ 284 (386)
++.++++++.+.+.|+.+.+.+++ |++++.+++.++++++.++ + + ..+.+.+|.|.+... +.+.+
T Consensus 78 ~~~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g--~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~ 155 (182)
T 3can_A 78 NELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR--HPEIINLLPYHDIGKGKHAKLGSIYNPKGYK 155 (182)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS--CCSEEEEEECCC------------------C
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcC--ccceEEEecCcccCHHHHHHhCCcCcccCCC
Confidence 799999999999999886665544 4468899999999999998 6 6 789999999977443 33345
Q ss_pred CCCHHH--HHHHHHHHHHh
Q 016605 285 PVEIWE--MIRMIATARIV 301 (386)
Q Consensus 285 ~~s~~e--~~~~~a~~R~~ 301 (386)
+++.++ +.+....++..
T Consensus 156 ~~~~e~~~l~~~~~~~~~~ 174 (182)
T 3can_A 156 MQTPSEEVQQQCIQILTDY 174 (182)
T ss_dssp CBCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHc
Confidence 566666 77777777654
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=9.7e-06 Score=75.58 Aligned_cols=222 Identities=13% Similarity=0.057 Sum_probs=148.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
++.++.++.++.+.+.|++.+-++++..+ ...|.. .+..+.++.+++. +..+..-. .+.+.++...++|++.+.+
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~-~~~p~~-~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~ag~~~v~i 99 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVSP-KWVPQM-GDHTEVLKGIQKFPGINYPVLT--PNLKGFEAAVAAGAKEVVI 99 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCCT-TTCGGG-TTHHHHHHHSCCCTTCBCCEEC--CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCc-cccccc-CCHHHHHHHHhhCCCCEEEEEc--CCHHhHHHHHHCCCCEEEE
Confidence 89999999999999999998877653222 111311 2334555555543 44432211 3578899999999999998
Q ss_pred ccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeec------CCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 201 NLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGL------GEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 201 ~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Gl------get~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
...+.+ ....+++.+. .++...+.++.+++.|+.+..++++.+ ..+.+.+.+.++.+.++| ++.+.+.
T Consensus 100 ~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~- 176 (298)
T 2cw6_A 100 FGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG--CYEISLG- 176 (298)
T ss_dssp EEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTT--CSEEEEE-
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEec-
Confidence 765553 3445555432 567788889999999999888877543 137899999999999997 6665543
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC--hhHHHhhhhcCcccc---ccC--C-ccc--cC
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS--MPEQALCFLAGANSI---FTG--E-KLL--TT 341 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~--~~~~~~~l~~Gan~~---~~g--~-~~~--t~ 341 (386)
+|- ...++.++.+++...+..+|+..+.+.+ ...++ -.....++.+||+.+ +.| + .|. .+
T Consensus 177 -----DT~----G~~~P~~~~~lv~~l~~~~~~~~i~~H~-Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~a 246 (298)
T 2cw6_A 177 -----DTI----GVGTPGIMKDMLSAVMQEVPLAALAVHC-HDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGAS 246 (298)
T ss_dssp -----ETT----SCCCHHHHHHHHHHHHHHSCGGGEEEEE-BCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSC
T ss_pred -----CCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEE-CCCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCc
Confidence 231 2357888899998888878754343321 11222 122467889999977 222 2 111 35
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++...++++.+++..|+.+
T Consensus 247 GN~~~E~lv~~l~~~g~~~ 265 (298)
T 2cw6_A 247 GNLATEDLVYMLEGLGIHT 265 (298)
T ss_dssp CBCBHHHHHHHHHHHTCBC
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 6688999999999988753
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-05 Score=70.89 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+.+++...+..- | .+....+.++.+++. +.++..-. .+.+.+++..++|++.|.
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~-p-~~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V~ 97 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYARIEATSFVSPKWV-P-QLADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEIA 97 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTC-G-GGTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEccCcCcccc-c-cccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEEE
Confidence 389999999999999999998877542211100 2 122456777777654 66653332 468889999999999998
Q ss_pred cccCchHHHHhh--hCCC--CCHHHHHHHHHHHHHcCCeeeEeEE--eec----CCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 200 HNLDTSREFYSK--IITT--RSYDERLETLKHVREAGINVCSGGI--IGL----GEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 200 i~le~~~~~~~~--i~~~--~s~~~~l~~i~~a~~~Gi~v~~~~i--~Gl----get~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.+.+.+ .+.+ ++.+ .+++...++++.+++.|+.+...+. +|. ..+.+++.+.++.+.+.| ++.+.+
T Consensus 98 i~~~~S~-~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l 174 (295)
T 1ydn_A 98 VFISASE-GFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLG--CHEVSL 174 (295)
T ss_dssp EEEESCH-HHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHT--CSEEEE
T ss_pred EEEecCH-HHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEe
Confidence 8664542 2332 3322 1455666778999999999875554 432 247899999999999997 776666
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcce--eecCcccccChhHHHhhhhcCcccc---ccC---Cccc--
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV--RLSAGRVRFSMPEQALCFLAGANSI---FTG---EKLL-- 339 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i--~i~~g~~~~~~~~~~~~l~~Gan~~---~~g---~~~~-- 339 (386)
.- .-| ..++.+..+++...+...|...+ +.-.. .++.......++.+||+.+ +.| -.|.
T Consensus 175 ~D---t~G-------~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~-~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g 243 (295)
T 1ydn_A 175 GD---TIG-------RGTPDTVAAMLDAVLAIAPAHSLAGHYHDT-GGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPG 243 (295)
T ss_dssp EE---TTS-------CCCHHHHHHHHHHHHTTSCGGGEEEEEBCT-TSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTT
T ss_pred cC---CCC-------CcCHHHHHHHHHHHHHhCCCCeEEEEECCC-cchHHHHHHHHHHhCCCEEEeccccCCCCCCCCC
Confidence 51 112 24688888888888877764223 22111 1222233467888999987 222 1122
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 016605 340 TTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~p 360 (386)
.+++...++++.+++..|+.+
T Consensus 244 ~~GN~~~e~lv~~l~~~g~~~ 264 (295)
T 1ydn_A 244 AKGNVDTVAVVEMLHEMGFET 264 (295)
T ss_dssp SCCBCBHHHHHHHHHHTTCBC
T ss_pred CcCChhHHHHHHHHHhcCCCC
Confidence 356678999999999988754
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=8e-07 Score=84.56 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=93.1
Q ss_pred eeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHH-HHHcCCc--EEEEecccCCCCCChhhHHH----HHHH
Q 016605 92 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQK-AKEAGST--RFCMGAAWRDTIGRKTNFNQ----ILEY 164 (386)
Q Consensus 92 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~-~~~~G~~--~v~l~~g~~~~~ge~~~~~~----l~~~ 164 (386)
++. ..+|.+.|.||+.....+....-.-..+.+|+++.++. +.+.+.. .|.+++ .. +|...+. ..++
T Consensus 111 ln~-y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~-~T----Dpyp~E~~~~ltr~~ 184 (368)
T 4fhd_A 111 IPL-ATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAAC-TS----DIVGIDHLTHSLKKA 184 (368)
T ss_dssp CCS-EEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCS-SB----CHHHHHTTTCHHHHH
T ss_pred eCC-ccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEc-CC----CcchhhHHHhHHHHH
Confidence 455 67999999999754332111100112678999988765 3333333 333332 22 2333333 3344
Q ss_pred HHHHhhc-CcEEE-EecCCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeEeEEe
Q 016605 165 VKDIRDM-GMEVC-CTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITT-RSYDERLETLKHVREAGINVCSGGII 241 (386)
Q Consensus 165 i~~ik~~-g~~i~-~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~-~s~~~~l~~i~~a~~~Gi~v~~~~i~ 241 (386)
++.+.+. +..+. .|=+.+. +.+..+...|...|.+++.+ +++.+.+-++ .+.++++++++.+.++|+++.+.+..
T Consensus 185 le~l~~~~~~~v~i~TKs~li-d~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~aGipv~v~iaP 262 (368)
T 4fhd_A 185 IEFIGATDYGRLRFVTKYEHV-DHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAP 262 (368)
T ss_dssp HHHHHHCSSEEEEEEESCCCC-GGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHhCCCceEEEEeCCcCH-HHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 4445544 33332 2322222 23444444455566667755 6667777664 48999999999999999998887765
Q ss_pred ec-CCCH-HHHHHHHHHHhc
Q 016605 242 GL-GEAE-EDRVGLLHTLAT 259 (386)
Q Consensus 242 Gl-get~-ed~~~~l~~l~~ 259 (386)
-+ ++++ ++..++++.+.+
T Consensus 263 IiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 263 IYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp ECCCTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 45 5555 677777776644
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00036 Score=64.96 Aligned_cols=224 Identities=13% Similarity=0.043 Sum_probs=143.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+-.++...+. .-| .+.+..+.++.+.+ .+..+.... .+.+.+++..++|++.|.
T Consensus 26 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~-~~~-~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~aG~~~v~ 101 (302)
T 2ftp_A 26 PIEVADKIRLVDDLSAAGLDYIEVGSFVSPK-WVP-QMAGSAEVFAGIRQRPGVTYAALA--PNLKGFEAALESGVKEVA 101 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEECSCTT-TCG-GGTTHHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHHTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCcc-ccc-cccCHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHhCCcCEEE
Confidence 4899999999999999999988765432221 112 11233345555543 255554333 378889999999999988
Q ss_pred cccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecC------CCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+..-+.+ ....+++.+. +.+...+.++.+++.|+.+...+.+-++ -+.+.+.+.++.+.+.| ++.+.+-
T Consensus 102 i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~ 179 (302)
T 2ftp_A 102 VFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG--CYEVSLG 179 (302)
T ss_dssp EEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT--CSEEEEE
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEEe
Confidence 7654432 2334454322 4566677788899999998776655332 36788899999898997 6665554
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccC--C-ccc--cC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTG--E-KLL--TT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g--~-~~~--t~ 341 (386)
+|- + ..++.+..+++...+..+|+..+.+.+ .-.++.......++.+||+.+ +.| + .|- .+
T Consensus 180 ------DT~-G---~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~ 249 (302)
T 2ftp_A 180 ------DTI-G---VGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGAT 249 (302)
T ss_dssp ------ESS-S---CCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCB
T ss_pred ------CCC-C---CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCC
Confidence 221 1 146788888888777767653332221 011222333467889999987 332 2 111 25
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++.+.++++.+++..|+.+
T Consensus 250 GN~~~E~lv~~l~~~g~~~ 268 (302)
T 2ftp_A 250 GNVASEDVLYLLNGLEIHT 268 (302)
T ss_dssp CBCBHHHHHHHHHHTTCBC
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 6788999999999988754
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00028 Score=65.78 Aligned_cols=224 Identities=9% Similarity=0.064 Sum_probs=144.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.++.++.++.++.+.+.|++.+-+++...+. .-| .+.+..+.++.+++. +..+..-. .+.+.++...++|++.+.
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~-~~p-~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~~g~~~v~ 99 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYIEITSFVHPK-WIP-ALRDAIDVAKGIDREKGVTYAALV--PNQRGLENALEGGINEAC 99 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEEEEEECSCTT-TCG-GGTTHHHHHHHSCCCTTCEEEEEC--CSHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcc-ccc-ccCCHHHHHHHhhhcCCCeEEEEe--CCHHhHHHHHhCCcCEEE
Confidence 4899999999999999999988776532221 112 112223445555432 44433222 257789999999999998
Q ss_pred cccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecC------CCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 200 HNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 200 i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+.+-+.+ -...+++.+. .++...+.++.+++.|+.+...+.+.++ -+.+.+.+.++.+.++| ++.+.+-
T Consensus 100 i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~ 177 (307)
T 1ydo_A 100 VFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG--ISELSLG 177 (307)
T ss_dssp EEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT--CSCEEEE
T ss_pred EEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEEc
Confidence 8765543 2233343221 3456677888999999998877766442 36789999999999997 6554432
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccC--C-cc--ccC
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTG--E-KL--LTT 341 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g--~-~~--~t~ 341 (386)
+|- ...++.++.+++...+..+|+..+.+-+ .-.++.-.....++.+||+.+ +.| + .| -.+
T Consensus 178 ------DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~gra 247 (307)
T 1ydo_A 178 ------DTI----GAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSS 247 (307)
T ss_dssp ------CSS----CCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEE
T ss_pred ------CCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCC
Confidence 332 2357888889888888777754343321 111222233467889999987 332 2 11 135
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 016605 342 PNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 342 ~~~~~~~~~~~i~~~G~~p 360 (386)
++.+.++++.+++..|+.+
T Consensus 248 GN~~~E~lv~~L~~~g~~t 266 (307)
T 1ydo_A 248 GNAATEDIVYMLEQMDIKT 266 (307)
T ss_dssp CBCBHHHHHHHHHHTTCBC
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 6788999999999988764
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00041 Score=65.63 Aligned_cols=221 Identities=11% Similarity=0.063 Sum_probs=141.1
Q ss_pred CCCHHHHHHHHH-HHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh---hc-CcEEEEecCCCCHHHHHHHHHhcc
Q 016605 121 LMTKDAVMQAAQ-KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR---DM-GMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 121 ~~s~eeI~~~~~-~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik---~~-g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.++.++.++.++ .+.+.|++.+-+++... .|..++.+..+.+... .. +..+..-.- ..+.++...++|+
T Consensus 37 ~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~--~~~~i~~a~~~g~ 110 (337)
T 3ble_A 37 SFSTSEKLNIAKFLLQKLNVDRVEIASARV----SKGELETVQKIMEWAATEQLTERIEILGFVD--GNKTVDWIKDSGA 110 (337)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEETTS----CTTHHHHHHHHHHHHHHTTCGGGEEEEEESS--TTHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCCC----ChhHHHHHHHHHhhhhhhccCCCCeEEEEcc--chhhHHHHHHCCC
Confidence 389999999999 99999999887765321 1333444444333211 11 223322111 1227888899999
Q ss_pred CeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEe---ecCCCHHHHHHHHHHHhcCCCCCCeEee
Q 016605 196 TAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGII---GLGEAEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 196 ~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~---Glget~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
+.+.+.+.+.+ ....+++.+. .++...+.++.+++.|+.+..++.. +...+.+.+.+.++.+.++| ++.+.+
T Consensus 111 ~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l 188 (337)
T 3ble_A 111 KVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEH--IERIFL 188 (337)
T ss_dssp CEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSC--CSEEEE
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 99998766653 3444554322 4566677888889999998877665 44446788899999999997 554433
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCC
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 345 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~ 345 (386)
++|- ...++.+..+++...+..+|+..+.+-+ .-.++.-.....++.+||+.+ +.|-. ..+++.+
T Consensus 189 ------~DT~----G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG-~~aGN~~ 257 (337)
T 3ble_A 189 ------PDTL----GVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGLG-ERAGNTP 257 (337)
T ss_dssp ------ECTT----CCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCS-STTCBCB
T ss_pred ------ecCC----CCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEEEeccccc-ccccchh
Confidence 2332 2357888899998888888764443321 111222233467889999987 23210 1366788
Q ss_pred hhHHHHHHHHc-CCCc
Q 016605 346 FDADQLMFKVL-GLTP 360 (386)
Q Consensus 346 ~~~~~~~i~~~-G~~p 360 (386)
.++++.+++.. |+.+
T Consensus 258 ~E~lv~~L~~~~g~~t 273 (337)
T 3ble_A 258 LEALVTTIHDKSNSKT 273 (337)
T ss_dssp HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 99999999887 8643
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0016 Score=60.24 Aligned_cols=221 Identities=12% Similarity=0.028 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE--EEecCC-CCHHHHHHHHHhccCe
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV--CCTLGM-LEKHQAIELKKAGLTA 197 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i--~~t~g~-l~~e~l~~Lk~aG~~~ 197 (386)
.++.++.++.++.+.+.|++.|-+++.. . .|..++.+..+.+..+ +..+ .+.+.. --+..++.++++|++.
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~---~-~~~d~e~v~~i~~~~~--~~~i~~l~~~~~~di~~a~~~~~~ag~~~ 96 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPI---S-SPGDFECVKAIAKAIK--HCSVTGLARCVEGDIDRAEEALKDAVSPQ 96 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGG---G-CHHHHHHHHHHHHHCC--SSEEEEEEESSHHHHHHHHHHHTTCSSEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---C-CccHHHHHHHHHHhcC--CCEEEEEecCCHHHHHHHHHHHhhcCCCE
Confidence 4899999999999999999988765321 1 2334444444433332 3333 332211 0122334444579998
Q ss_pred eecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 198 YNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 198 v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
|.+.+-+.+ ....+++.+. ..+...+.++.+++.|+.+..+...+..-+.+.+.+.++.+.++| ++.+.+
T Consensus 97 v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l----- 169 (293)
T 3ewb_X 97 IHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAG--ATVINI----- 169 (293)
T ss_dssp EEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT--CCEEEE-----
T ss_pred EEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcC--CCEEEe-----
Confidence 887665543 2223333221 344555667778889998887776655567888999999999997 554432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc---ceeec-CcccccChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKA---MVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~---~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
++|- ...++.++.+++...+..+|+. .+.+- ..-.++.-.....++.+||+.+ +.|-. ..+++...+
T Consensus 170 -~DT~----G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~GlG-eraGN~~~E 243 (293)
T 3ewb_X 170 -PDTV----GYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTINGIG-ERAGNTALE 243 (293)
T ss_dssp -ECSS----SCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCC-TTTCBCBHH
T ss_pred -cCCC----CCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeeccccc-cccccHhHH
Confidence 2332 2357888888998888888852 22221 1111222233467889999987 22211 135678889
Q ss_pred HHHHHHHH----cCCCc
Q 016605 348 ADQLMFKV----LGLTP 360 (386)
Q Consensus 348 ~~~~~i~~----~G~~p 360 (386)
+++.+++. +|+.+
T Consensus 244 ~vv~~L~~~~~~~g~~t 260 (293)
T 3ewb_X 244 EVAVALHIRKDFYQAET 260 (293)
T ss_dssp HHHHHHHHTHHHHCEEE
T ss_pred HHHHHHHhhhhhcCCCC
Confidence 99999985 67643
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0023 Score=60.60 Aligned_cols=214 Identities=12% Similarity=0.113 Sum_probs=139.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEe-----cccCCCCCChhhHHHHHHHHHHHhhc--CcEE--EEecCCCCHHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMG-----AAWRDTIGRKTNFNQILEYVKDIRDM--GMEV--CCTLGMLEKHQAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~-----~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i--~~t~g~l~~e~l~~Lk 191 (386)
.++.++.++.++.+.+.|++.+-++ ++..+..|.+ ...-.+.++.+++. +..+ ...++....+.+++..
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~--~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~ 103 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFG--RHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAY 103 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCC--SSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCC--CCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHH
Confidence 3899999999999999999998874 1111111211 12234455555432 4443 2244555788999999
Q ss_pred HhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 192 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 192 ~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
++|++.+.+.+ .. ...+...+.++.+++.|+.+...+.-...-+.+.+.+.++.+.+.| ++.+.+
T Consensus 104 ~aGvd~v~I~~-~~----------s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~G--a~~i~l-- 168 (345)
T 1nvm_A 104 QAGARVVRVAT-HC----------TEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYM-- 168 (345)
T ss_dssp HHTCCEEEEEE-ET----------TCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEE--
T ss_pred hCCcCEEEEEE-ec----------cHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCC--CCEEEE--
Confidence 99999988753 11 1124556788899999999887776556667889999999999886 554333
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCCh
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF 346 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~ 346 (386)
++|- ...++.++.+++...|..+| +..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+.+.+.
T Consensus 169 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG-~~aGN~~l 239 (345)
T 1nvm_A 169 ----ADSG----GAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMG-AGAGNAPL 239 (345)
T ss_dssp ----ECTT----CCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBH
T ss_pred ----CCCc----CccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhcc-CCccCcCH
Confidence 2442 12357888899998888886 44333321 111222233467888999877 32211 13677888
Q ss_pred hHHHHHHHHcCCCc
Q 016605 347 DADQLMFKVLGLTP 360 (386)
Q Consensus 347 ~~~~~~i~~~G~~p 360 (386)
++.+.+++..|+.+
T Consensus 240 e~lv~~L~~~g~~~ 253 (345)
T 1nvm_A 240 EVFIAVAERLGWNH 253 (345)
T ss_dssp HHHHHHHHHHTCBC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999888753
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0077 Score=58.32 Aligned_cols=209 Identities=15% Similarity=0.118 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCc--EEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~--~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++-++.++.+.+.|++.|-++. |. .-+...+.++.+.+.+. .++. ....+.+-++...++|++.|
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~-----asp~d~~~~~~i~~~~~~~~v~~-~~r~~~~di~~A~~aG~~~V 127 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELTS---PV-----ASEQSRQDCEAICKLGLKCKILT-HIRCHMDDARVAVETGVDGV 127 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TT-----SCHHHHHHHHHHHTSCCSSEEEE-EEESCHHHHHHHHHTTCSEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEee---cc-----cCHHHHHHHHHHHhcCCCCEEEE-eeccChhhHHHHHHcCCCEE
Confidence 48999999999999999999887643 21 12334445555554433 3322 12245667888899999999
Q ss_pred ecccCchHHHHh--hhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 199 NHNLDTSREFYS--KIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 199 ~i~le~~~~~~~--~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
.+.+-+.+ .+. +++.+. ..+...+.++.+++.|+.+.....-+...+.+.+.+.++.+.+.| ++.+.+
T Consensus 128 ~i~~s~Sd-~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~G--a~~i~l----- 199 (423)
T 3ivs_A 128 DVVIGTSQ-YLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIG--VNRVGI----- 199 (423)
T ss_dssp EEEEEC--------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHC--CSEEEE-----
T ss_pred EEEeeccH-HHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhC--CCcccc-----
Confidence 88765552 222 222221 356777889999999999888777666778899999999999987 554322
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHHH
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 350 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~~ 350 (386)
++|- ...++.++.+++...+...+ ..+.+.+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.+++.
T Consensus 200 -~DTv----G~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~ti~GlG-ERaGNa~Le~vv 272 (423)
T 3ivs_A 200 -ADTV----GCATPRQVYDLIRTLRGVVS-CDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIG-ERNGITPLGALL 272 (423)
T ss_dssp -EETT----SCCCHHHHHHHHHHHHHHCS-SEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBHHHHH
T ss_pred -CCcc----CcCCHHHHHHHHHHHHhhcC-CeEEEEECCCCchHHHHHHHHHHhCCCEEEEeccccc-CcccchhHHHHH
Confidence 2332 23467777788777666553 2232211 111222223467888999987 33210 124455666655
Q ss_pred HHH
Q 016605 351 LMF 353 (386)
Q Consensus 351 ~~i 353 (386)
..+
T Consensus 273 ~~L 275 (423)
T 3ivs_A 273 ARM 275 (423)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.015 Score=55.42 Aligned_cols=218 Identities=14% Similarity=0.117 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEE--EEecCCCCHHHHH----HHHHhc
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV--CCTLGMLEKHQAI----ELKKAG 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i--~~t~g~l~~e~l~----~Lk~aG 194 (386)
.++.++.++.++.+.+.|++.+-.+. +. ..|..++.+..+.+.++ +..+ .+.. ..+.++ .++.+|
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~-~~~~d~e~v~~i~~~~~--~~~i~~l~r~---~~~di~~a~~al~~ag 100 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGF---AA-ASPGDFEAVNAIAKTIT--KSTVCSLSRA---IERDIRQAGEAVAPAP 100 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEE---GG-GCHHHHHHHHHHHTTCS--SSEEEEEEES---SHHHHHHHHHHHTTSS
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeC---CC-CCHHHHHHHHHHHHhCC--CCeEEEEecC---CHHHHHHHHHHHhhCC
Confidence 48999999999999999999876643 11 12334444444433322 2332 2221 233334 444589
Q ss_pred cCeeecccCchH-HHHhhhCCCC--CHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 195 LTAYNHNLDTSR-EFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 195 ~~~v~i~le~~~-~~~~~i~~~~--s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
++.|.+.+-+.+ ....+++.+. ..+...+.++.+++.|..+..+...+...+.+.+.+.++.+.+.| ++.+.+
T Consensus 101 ~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~G--a~~i~l-- 176 (370)
T 3rmj_A 101 KKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAG--ATTINI-- 176 (370)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHT--CCEEEE--
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcC--CCEEEe--
Confidence 999988776653 3333443321 344455567788889998877777766678889999999999997 554332
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCC
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNN 344 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~ 344 (386)
++|- ...++.++.+++...+..+|+ ..+.+-+ .-.++.-.....++.+||+.+ +.|-. ..+++.
T Consensus 177 ----~DT~----G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlG-eraGN~ 247 (370)
T 3rmj_A 177 ----PDTV----GYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLG-ERAGNA 247 (370)
T ss_dssp ----ECSS----SCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBC
T ss_pred ----cCcc----CCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccccC-cccccc
Confidence 3442 235688888888888888875 3333221 111222223467889999987 33311 135667
Q ss_pred ChhHHHHHHHH----cCCCc
Q 016605 345 DFDADQLMFKV----LGLTP 360 (386)
Q Consensus 345 ~~~~~~~~i~~----~G~~p 360 (386)
+.++++.+++. +|+.+
T Consensus 248 ~lE~vv~~L~~~~~~~g~~t 267 (370)
T 3rmj_A 248 SVEEIVMALKVRHDLFGLET 267 (370)
T ss_dssp BHHHHHHHHHHTHHHHCCBC
T ss_pred cHHHHHHHHHhhhhccCCCC
Confidence 88888877763 46644
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.009 Score=56.02 Aligned_cols=220 Identities=12% Similarity=0.129 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh----ccC
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA----GLT 196 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a----G~~ 196 (386)
.++.++.++.++.+.+.|++.+-++. +.. .|..++.+..+.+.++ +..+..- .....+.++.-.++ |++
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~-~~~d~e~v~~i~~~~~--~~~i~~l-~r~~~~~i~~a~~al~~ag~~ 96 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGF---PVS-SPGDFNSVVEITKAVT--RPTICAL-TRAKEADINIAGEALRFAKRS 96 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEEC---TTS-CHHHHHHHHHHHHHCC--SSEEEEE-CCSCHHHHHHHHHHHTTCSSE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---CCC-CHhHHHHHHHHHHhCC--CCEEEEe-ecCCHHHHHHHHHhhcccCCC
Confidence 48899999999999999999886643 221 2334444443333322 3343221 11234445544444 999
Q ss_pred eeecccCchH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 197 AYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 197 ~v~i~le~~~-~~~~~i~~--~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
.|.+.+-+.+ ....+++. ...++...+.++.+++.|+.+..+...+..-+.+.+.+.++.+.+.| ++.+.
T Consensus 97 ~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~----- 169 (325)
T 3eeg_A 97 RIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAG--ADVVN----- 169 (325)
T ss_dssp EEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHT--CSEEE-----
T ss_pred EEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcC--CCEEE-----
Confidence 9887655553 22233433 33577788899999999999887777766667888899999999887 55432
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCCh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF 346 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~ 346 (386)
.++|- ...++.++.+++...+..+|+ ..+.+-+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.
T Consensus 170 -l~DT~----G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~tv~GlG-er~GN~~l 243 (325)
T 3eeg_A 170 -IPDTT----GYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGIG-ERAGNTAL 243 (325)
T ss_dssp -CCBSS----SCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGCC-STTCCCBH
T ss_pred -ecCcc----CCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccchhH
Confidence 23442 235778888999888888885 3333321 111222223466888999987 32211 13567888
Q ss_pred hHHHHHHHH----cCCCc
Q 016605 347 DADQLMFKV----LGLTP 360 (386)
Q Consensus 347 ~~~~~~i~~----~G~~p 360 (386)
++++.+++. +|+.+
T Consensus 244 E~vv~~L~~~~~~~g~~t 261 (325)
T 3eeg_A 244 EEVVMAMECHKETLGLET 261 (325)
T ss_dssp HHHHHHHHHTHHHHCEEC
T ss_pred HHHHHHHHhhhhccCCCC
Confidence 998888884 56643
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.02 Score=54.93 Aligned_cols=209 Identities=14% Similarity=0.154 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCc--EEEEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~--~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.+-+++ | ...+...+.++.+++.+. .++.-+ ....+.++...++|++.+
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~---p-----~~~~~~~~~~~~i~~~~~~~~v~~~~-r~~~~di~~a~~~g~~~v 91 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTT---P-----VASPQSRKDAEVLASLGLKAKVVTHI-QCRLDAAKVAVETGVQGI 91 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---T-----TSCHHHHHHHHHHHTSCCSSEEEEEE-ESCHHHHHHHHHTTCSEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcC---C-----cCCHHHHHHHHHHHhcCCCcEEEEEc-ccChhhHHHHHHcCCCEE
Confidence 48999999999999999999887743 1 122344566666665443 333221 124666889999999998
Q ss_pred ecccCchHHHHhhhCCCCC----HHHHHHHHHHHHHcC--CeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 199 NHNLDTSREFYSKIITTRS----YDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s----~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
.+.+-+.+ .+.. .-+.+ ++...++++.+++.| +.+...+.-+...+.+.+.+.++.+.+. ++.+.+
T Consensus 92 ~i~~~~s~-~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~---a~~i~l--- 163 (382)
T 2ztj_A 92 DLLFGTSK-YLRA-PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY---VDRVGL--- 163 (382)
T ss_dssp EEEECC----------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG---CSEEEE---
T ss_pred EEEeccCH-HHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh---cCEEEe---
Confidence 87664443 2222 22344 455677888999999 8887776665566788888888888766 233222
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~l-p~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
++|- ....+.++.+++...+..+ ++..+.+-+ .-.++.-.....++.+||+.+ +.|-. ..+++.+.+
T Consensus 164 ---~DT~----G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlG-eraGN~~lE 235 (382)
T 2ztj_A 164 ---ADTV----GVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIG-ERNGITPLG 235 (382)
T ss_dssp ---EETT----SCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBHH
T ss_pred ---cCCC----CCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEcccccc-ccccchhHH
Confidence 2332 2246788888887777654 443333321 111222233467889999987 33210 134556666
Q ss_pred HHHHHHH
Q 016605 348 ADQLMFK 354 (386)
Q Consensus 348 ~~~~~i~ 354 (386)
+++..++
T Consensus 236 ~vv~~L~ 242 (382)
T 2ztj_A 236 GFLARMY 242 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6664443
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0047 Score=61.62 Aligned_cols=215 Identities=13% Similarity=0.109 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC-----CCCChhhHHHHHHHHHHHhhcCcEEEEe--c--CC------CCHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT--L--GM------LEKH 185 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~-----~~ge~~~~~~l~~~i~~ik~~g~~i~~t--~--g~------l~~e 185 (386)
.++.++.++.++.+.+.|+..+-++++... ..+ +..++.+..+.+.++...+...+. | |. +.+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~-~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~ 121 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDR 121 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSC-CCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccC-CCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHH
Confidence 378999999999999999999988764320 001 223333333333333333333332 1 32 1366
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--EeecCCCHHHHHHHHHHHhcCCCC
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 263 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 263 (386)
.++...++|++.+.+..-. .+.+...++++.+++.|..+...+ ..|...+.+.+.+.++.+.+.|
T Consensus 122 ~ve~a~~aGvd~vrIf~s~-----------sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-- 188 (539)
T 1rqb_A 122 FVDKSAENGMDVFRVFDAM-----------NDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG-- 188 (539)
T ss_dssp HHHHHHHTTCCEEEECCTT-----------CCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCCEEEEEEeh-----------hHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcC--
Confidence 7888999999988874322 223566789999999999876555 4566678999999999999997
Q ss_pred CCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CcceeecC-cccccChhHHHhhhhcCcccc---ccCCcc
Q 016605 264 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKL 338 (386)
Q Consensus 264 ~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp-~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~ 338 (386)
++.+.+ ++|- ....+.++.+++...+..+| +..+.+-+ .-.++.-.....++.+||+.+ +.|-.
T Consensus 189 ad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~VD~ti~g~G- 257 (539)
T 1rqb_A 189 ADSIAL------KDMA----ALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMS- 257 (539)
T ss_dssp CSEEEE------EETT----CCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGC-
T ss_pred CCEEEe------CCCC----CCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccccC-
Confidence 554433 2332 22467888888888877776 44343321 111222223467889999987 22211
Q ss_pred ccCCCCChhHHHHHHHHcCCCc
Q 016605 339 LTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 339 ~t~~~~~~~~~~~~i~~~G~~p 360 (386)
..+++.+.++++.+++..|+.+
T Consensus 258 ertGN~~lE~lv~~L~~~g~~t 279 (539)
T 1rqb_A 258 LGPGHNPTESVAEMLEGTGYTT 279 (539)
T ss_dssp STTSBCBHHHHHHHTTTSSEEC
T ss_pred CCccChhHHHHHHHHHhcCCCc
Confidence 1266788888888888877654
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.025 Score=55.47 Aligned_cols=213 Identities=10% Similarity=0.087 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC-----CCCChhhHHHHHHHHHHHhhcCcEEEEe--c--CCC------CHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT--L--GML------EKHQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~-----~~ge~~~~~~l~~~i~~ik~~g~~i~~t--~--g~l------~~e~ 186 (386)
++.++.++.++.+.+.|+..+-.+++... ..+ +..++.+..+.+.++...+...+. | |.. .+..
T Consensus 27 ~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~-~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~ 105 (464)
T 2nx9_A 27 LRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG-EDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTF 105 (464)
T ss_dssp CCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC-CCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC-CCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHH
Confidence 78899999999999999999887654310 001 223333333332222223333332 1 322 2566
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--EeecCCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~ 264 (386)
++...++|++.+.+..-. .+.+...++++.+++.|..+...+ ..|...+.+.+.+.++.+.+.| +
T Consensus 106 v~~a~~~Gvd~i~if~~~-----------sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G--a 172 (464)
T 2nx9_A 106 VERAVKNGMDVFRVFDAM-----------NDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG--V 172 (464)
T ss_dssp HHHHHHTTCCEEEECCTT-----------CCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHhCCcCEEEEEEec-----------CHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC--C
Confidence 788889999988874322 223566788999999999876555 4455668999999999999997 6
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCcccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLT 340 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t 340 (386)
+.+.+- +|- ....+.+..+++...+..+ +..+.+-+ .-.++.-.....++.+||+.+ +.|-. ..
T Consensus 173 d~I~l~------DT~----G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~g-er 240 (464)
T 2nx9_A 173 DSIALK------DMA----GILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMS-GT 240 (464)
T ss_dssp SEEEEE------ETT----SCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGC-ST
T ss_pred CEEEEc------CCC----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccC-CC
Confidence 544332 222 2246788888888777666 33333221 111222223467889999987 22211 12
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 016605 341 TPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 341 ~~~~~~~~~~~~i~~~G~~p 360 (386)
+++.+.++++.+++..|+.+
T Consensus 241 tGN~~lE~lv~~L~~~g~~t 260 (464)
T 2nx9_A 241 YGHPATESLVATLQGTGYDT 260 (464)
T ss_dssp TSCCBHHHHHHHHTTSTTCC
T ss_pred CcCHHHHHHHHHHHhcCCCc
Confidence 67789999999999888764
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.042 Score=56.80 Aligned_cols=214 Identities=11% Similarity=0.017 Sum_probs=138.4
Q ss_pred CCHHHHHHHHHHHHHc--CCcEEEEecccCC-----CCCChhhHHHHHHHHHHHhhcCcEEEEe--c--CC------CCH
Q 016605 122 MTKDAVMQAAQKAKEA--GSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT--L--GM------LEK 184 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~-----~~ge~~~~~~l~~~i~~ik~~g~~i~~t--~--g~------l~~ 184 (386)
++.++.++.++.+.+. |+..+-++||... ..++ ..++.+.++.+.+++..+..... + |. +..
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e-~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~ 200 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYE-CPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVF 200 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCC-CHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCC-CHHHHHHHHHHHcccchHHHHhcccccccccccCCcchH
Confidence 7899999999999987 5666776644320 1121 34555555555555443333332 1 21 135
Q ss_pred HHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee---c-----CCCHHHHHHHHHH
Q 016605 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG---L-----GEAEEDRVGLLHT 256 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G---l-----get~ed~~~~l~~ 256 (386)
+.++...++|++.+.+.. +. ...+....+++.+++.|..+...+.+. . ..+.+.+.+.++.
T Consensus 201 ~~i~~a~~~Gvd~irIf~-s~----------n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~ 269 (718)
T 3bg3_A 201 KFCEVAKENGMDVFRVFD-SL----------NYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEE 269 (718)
T ss_dssp HHHHHHHHHTCCEEEEEC-SS----------CCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCcCEEEEEe-cH----------HHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHH
Confidence 778888999999987743 11 245677788999999998877766665 1 1267888999999
Q ss_pred HhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---
Q 016605 257 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 257 l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
+.+.| ++.+.+ ++|- ....+.++.+++...+..+|+..+.+.+ .-.++.-.....++.+||+.+
T Consensus 270 l~~~G--a~~I~l------~DT~----G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~t 337 (718)
T 3bg3_A 270 LVRAG--THILCI------KDMA----GLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVA 337 (718)
T ss_dssp HHHHT--CSEEEE------ECTT----SCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCEEEE------cCcC----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEec
Confidence 99887 554433 2332 2356888889999888888765454432 112222233467889999987
Q ss_pred ccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 333 FTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 333 ~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
+.|- =..+.+.+.++++.+++..|+.+
T Consensus 338 i~Gl-GertGN~~lE~vv~~L~~~g~~t 364 (718)
T 3bg3_A 338 ADSM-SGMTSQPSMGALVACTRGTPLDT 364 (718)
T ss_dssp CGGG-CSTTSCCBHHHHHHHHTTSTTCC
T ss_pred Cccc-ccccCchhHHHHHHHHHhcCCCc
Confidence 2221 01367788999999999887653
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.19 Score=45.59 Aligned_cols=196 Identities=18% Similarity=0.215 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
...+.++.+.+.|+..+.+.+ ++..|.--++.++.+++ .++++......+++..+...+.+|.|.|.+....
T Consensus 73 ~p~~~A~~y~~~GA~~isvlt-------d~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVT-------EQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEEC-------CGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG
T ss_pred CHHHHHHHHHHcCCCEEEEec-------ChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEeccc
Confidence 334556677778999887764 23455555566666663 5777766666788888999999999999986544
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 284 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~ 284 (386)
+ +.++..+.++.+++.|+.+-.. . .|.+++...+ ++| ++.++++.. ..+.+
T Consensus 146 l-----------~~~~l~~l~~~a~~lGl~~lve----v-~t~ee~~~A~----~~G--ad~IGv~~r---~l~~~---- 196 (272)
T 3qja_A 146 L-----------EQSVLVSMLDRTESLGMTALVE----V-HTEQEADRAL----KAG--AKVIGVNAR---DLMTL---- 196 (272)
T ss_dssp S-----------CHHHHHHHHHHHHHTTCEEEEE----E-SSHHHHHHHH----HHT--CSEEEEESB---CTTTC----
T ss_pred C-----------CHHHHHHHHHHHHHCCCcEEEE----c-CCHHHHHHHH----HCC--CCEEEECCC---ccccc----
Confidence 3 1334445567788889874321 1 3566654433 455 788888732 11111
Q ss_pred CCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCCCC
Q 016605 285 PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPS 364 (386)
Q Consensus 285 ~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~~~ 364 (386)
.++.+.+.++ +...|....-+..|-++ +++.-.....+||+.+..|+.+... .++.+..+.+.++|..|..|.
T Consensus 197 ~~dl~~~~~l----~~~v~~~~pvVaegGI~-t~edv~~l~~~GadgvlVGsal~~a--~dp~~~~~~l~~~~~~~~~~~ 269 (272)
T 3qja_A 197 DVDRDCFARI----APGLPSSVIRIAESGVR-GTADLLAYAGAGADAVLVGEGLVTS--GDPRAAVADLVTAGTHPSCPK 269 (272)
T ss_dssp CBCTTHHHHH----GGGSCTTSEEEEESCCC-SHHHHHHHHHTTCSEEEECHHHHTC--SCHHHHHHHHHTTTTCSCCCC
T ss_pred ccCHHHHHHH----HHhCcccCEEEEECCCC-CHHHHHHHHHcCCCEEEEcHHHhCC--CCHHHHHHHHHhhhcCCcCCc
Confidence 1233332222 22345322333322222 1333355677899999999866544 478888888889988776654
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.027 Score=50.46 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEE-ecccC----CCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhcc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCM-GAAWR----DTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l-~~g~~----~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
.+...+.++++.+.+.|++-+.+ +..+. .+.| ..+.+.++... +..+.+..... -....++.+.++|+
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-----~~~v~~lr~~~p~~~ldvHLmv~-~p~~~i~~~~~aGA 110 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-----PMVLKALRDYGITAGMDVHLMVK-PVDALIESFAKAGA 110 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-----HHHHHHHHHHTCCSCEEEEEECS-SCHHHHHHHHHHTC
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-----HHHHHHHHHhCCCCeEEEEEeeC-CHHHHHHHHHHcCC
Confidence 34455666677777788876655 22222 1223 23444444433 33333322211 23668999999999
Q ss_pred CeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 196 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
|.+.+..|+.+ .. .++++.++++|+++...+- .+...+.+...+ .. ++.+-+....
T Consensus 111 d~itvH~Ea~~----------~~---~~~i~~ir~~G~k~Gvaln--p~Tp~e~l~~~l---~~----vD~VlvMsV~-- 166 (246)
T 3inp_A 111 TSIVFHPEASE----------HI---DRSLQLIKSFGIQAGLALN--PATGIDCLKYVE---SN----IDRVLIMSVN-- 166 (246)
T ss_dssp SEEEECGGGCS----------CH---HHHHHHHHTTTSEEEEEEC--TTCCSGGGTTTG---GG----CSEEEEECSC--
T ss_pred CEEEEccccch----------hH---HHHHHHHHHcCCeEEEEec--CCCCHHHHHHHH---hc----CCEEEEeeec--
Confidence 99999877631 22 3666777889987655432 233333332222 21 4566555443
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
||..-+...+.+.+++.++.+.....-.+..+.+.+| ++++....+..+|||.++.|. ..... .++.+..+.+++
T Consensus 167 PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGG---I~~~ti~~~~~aGAD~~V~GS-aIf~a-~dp~~~i~~l~~ 241 (246)
T 3inp_A 167 PGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGG---VNPYNIAEIAVCGVNAFVAGS-AIFNS-DSYKQTIDKMRD 241 (246)
T ss_dssp TTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESS---CCTTTHHHHHTTTCCEEEESH-HHHTS-SCHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECC---cCHHHHHHHHHcCCCEEEEeh-HHhCC-CCHHHHHHHHHH
Confidence 3542222222233333332222222222334555553 333445678899999999886 33322 355555555543
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.11 Score=46.09 Aligned_cols=204 Identities=16% Similarity=0.118 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccC
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 203 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le 203 (386)
++..+.++.+.+.|++.+.+...... + .......+.++.+++ .++++..+.+..+.+.++.+.++|++.+.++-.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~--~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~ 108 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAA--P--EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA 108 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCC--T--TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCcc--c--cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChH
Confidence 35666777778889988877532111 1 123345667777764 477888888888899999999999999998743
Q ss_pred chHHHHhhhCCCCCHHHHHHHHHHHHHcCC---eeeEeE-------Eeec-CC---CHHHHHHHHHHHhcCCCCCCeEee
Q 016605 204 TSREFYSKIITTRSYDERLETLKHVREAGI---NVCSGG-------IIGL-GE---AEEDRVGLLHTLATLPTHPESVPI 269 (386)
Q Consensus 204 ~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi---~v~~~~-------i~Gl-ge---t~ed~~~~l~~l~~l~~~~~~v~~ 269 (386)
... +.+...+ .+++.|. .+..++ .+-. +. +..+..+.++.+.+++ ++.+.+
T Consensus 109 ~~~----------~~~~~~~---~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G--~d~i~~ 173 (253)
T 1h5y_A 109 AVR----------NPQLVAL---LAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILL 173 (253)
T ss_dssp HHH----------CTHHHHH---HHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEE
T ss_pred Hhh----------CcHHHHH---HHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCC--CCEEEE
Confidence 321 1111122 2233342 222221 2211 21 1123344456666665 677777
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHH
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~ 349 (386)
+...| .++. ..++.+.+.+ .+... +..+-..+| ++- .+.-...+.+||+.++.|..+ .....+.++.
T Consensus 174 ~~~~~-~g~~----~~~~~~~i~~----l~~~~-~~pvia~GG-i~~-~~~~~~~~~~Ga~~v~vgsal-~~~~~~~~~~ 240 (253)
T 1h5y_A 174 TSIDR-DGTG----LGYDVELIRR----VADSV-RIPVIASGG-AGR-VEHFYEAAAAGADAVLAASLF-HFRVLSIAQV 240 (253)
T ss_dssp EETTT-TTTC----SCCCHHHHHH----HHHHC-SSCEEEESC-CCS-HHHHHHHHHTTCSEEEESHHH-HTTSSCHHHH
T ss_pred ecccC-CCCc----CcCCHHHHHH----HHHhc-CCCEEEeCC-CCC-HHHHHHHHHcCCcHHHHHHHH-HcCCCCHHHH
Confidence 65433 1222 1123333222 22222 222223332 221 122244567899999988744 3444678999
Q ss_pred HHHHHHcCCCc
Q 016605 350 QLMFKVLGLTP 360 (386)
Q Consensus 350 ~~~i~~~G~~p 360 (386)
.+++++.||.+
T Consensus 241 ~~~l~~~g~~~ 251 (253)
T 1h5y_A 241 KRYLKERGVEV 251 (253)
T ss_dssp HHHHHHTTCBC
T ss_pred HHHHHHcCCCC
Confidence 99999999864
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.18 Score=45.98 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=59.9
Q ss_pred eeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CChhhHHH
Q 016605 85 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQ 160 (386)
Q Consensus 85 ~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~----ge~~~~~~ 160 (386)
+..+.+++|+ |+- +|+. + .+..+++++++.+++..+.|.+-+-+.+..+-++ .+...+++
T Consensus 5 ~~~imgilN~-TpD--------SFsd----g---g~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~R 68 (280)
T 1eye_A 5 PVQVMGVLNV-TDD--------SFSD----G---GCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSR 68 (280)
T ss_dssp CCEEEEEEEC-SCC--------TTCS----S---CCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHH
T ss_pred CcEEEEEEeC-CCC--------CcCC----C---cccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHH
Confidence 3456677887 543 3332 1 1236899999999999999998887765222121 22345677
Q ss_pred HHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 161 ILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 161 l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
+...++.+++.++.+++ .....+.++.-.++|.+.|+
T Consensus 69 v~pvi~~l~~~~~piSI--DT~~~~va~aAl~aGa~iIN 105 (280)
T 1eye_A 69 VIPVVKELAAQGITVSI--DTMRADVARAALQNGAQMVN 105 (280)
T ss_dssp HHHHHHHHHHTTCCEEE--ECSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhhcCCCEEEE--eCCCHHHHHHHHHcCCCEEE
Confidence 88888888754555443 34567777777777777665
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.15 Score=45.13 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccC----CCCCChhhHHHHHHHHHHH--hhcCcEEEEecCCCCHHHHHHHHHhcc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWR----DTIGRKTNFNQILEYVKDI--RDMGMEVCCTLGMLEKHQAIELKKAGL 195 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~----~~~ge~~~~~~l~~~i~~i--k~~g~~i~~t~g~l~~e~l~~Lk~aG~ 195 (386)
+...+.++++.+.+.|++-+++ ++.+. .+.| ..+.+.++.. .+..+.+..-.. -....++.+.++|+
T Consensus 15 D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-----~~~v~~ir~~~~~~~~~dvhLmv~-~p~~~i~~~~~aGa 88 (228)
T 3ovp_A 15 DLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-----HPVVESLRKQLGQDPFFDMHMMVS-KPEQWVKPMAVAGA 88 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-----HHHHHHHHHHHCSSSCEEEEEECS-CGGGGHHHHHHHTC
T ss_pred CchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-----HHHHHHHHHhhCCCCcEEEEEEeC-CHHHHHHHHHHcCC
Confidence 3444556666677788876655 33222 1222 2344444444 222233322211 12457889999999
Q ss_pred CeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 196 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 196 ~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
|.+.+..|+.+ . ..+.++.+++.|+.+...+- .+...+.+...+ .. ++.+-+....
T Consensus 89 d~itvH~Ea~~----------~---~~~~i~~i~~~G~k~gval~--p~t~~e~l~~~l----~~---~D~Vl~msv~-- 144 (228)
T 3ovp_A 89 NQYTFHLEATE----------N---PGALIKDIRENGMKVGLAIK--PGTSVEYLAPWA----NQ---IDMALVMTVE-- 144 (228)
T ss_dssp SEEEEEGGGCS----------C---HHHHHHHHHHTTCEEEEEEC--TTSCGGGTGGGG----GG---CSEEEEESSC--
T ss_pred CEEEEccCCch----------h---HHHHHHHHHHcCCCEEEEEc--CCCCHHHHHHHh----cc---CCeEEEeeec--
Confidence 99999776631 2 23667778889987655432 233333322222 22 4555554443
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
||.. .+.. .+. .+..+...|.+.++..+.+.+|- +++.-..+..+|||.++.|. .... ..++.+..+.++
T Consensus 145 pGf~--Gq~f-~~~-~l~ki~~lr~~~~~~~I~VdGGI---~~~t~~~~~~aGAd~~VvGs-aIf~-a~dp~~~~~~l~ 214 (228)
T 3ovp_A 145 PGFG--GQKF-MED-MMPKVHWLRTQFPSLDIEVDGGV---GPDTVHKCAEAGANMIVSGS-AIMR-SEDPRSVINLLR 214 (228)
T ss_dssp TTTC--SCCC-CGG-GHHHHHHHHHHCTTCEEEEESSC---STTTHHHHHHHTCCEEEESH-HHHT-CSCHHHHHHHHH
T ss_pred CCCC--Cccc-CHH-HHHHHHHHHHhcCCCCEEEeCCc---CHHHHHHHHHcCCCEEEEeH-HHhC-CCCHHHHHHHHH
Confidence 3442 2221 111 12334455556665556666542 33444667889999999886 3332 234555555444
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.45 Score=42.04 Aligned_cols=193 Identities=11% Similarity=0.105 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhc-Cc--EEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 125 DAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM-GM--EVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~--~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
-.+.++++.+ +.|++.+++ +..++.. | ++..-...++.+++. .. .+..-.- -....++.+.++|.|.+.+
T Consensus 13 ~~l~~~i~~~-~~gad~lHvDvmDG~fv---p-n~t~G~~~v~~lr~~~~~~~dvhLmv~-dp~~~i~~~~~aGAd~itv 86 (231)
T 3ctl_A 13 LKFKEQIEFI-DSHADYFHIDIMDGHFV---P-NLTLSPFFVSQVKKLATKPLDCHLMVT-RPQDYIAQLARAGADFITL 86 (231)
T ss_dssp GGHHHHHHHH-HTTCSCEEEEEECSSSS---S-CCCBCHHHHHHHHTTCCSCEEEEEESS-CGGGTHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHH-HcCCCEEEEEEEeCccC---c-cchhcHHHHHHHHhccCCcEEEEEEec-CHHHHHHHHHHcCCCEEEE
Confidence 3445556666 778776543 1122210 1 111122355555543 23 3322111 1244689999999999998
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
..|+. ..+. .+.++.+++.|+++...+ ..+...+.+...+ . .++.+-+....| |..-
T Consensus 87 h~Ea~---------~~~~---~~~i~~i~~~G~k~gv~l--np~tp~~~~~~~l----~---~~D~VlvmsV~p--Gfgg 143 (231)
T 3ctl_A 87 HPETI---------NGQA---FRLIDEIRRHDMKVGLIL--NPETPVEAMKYYI----H---KADKITVMTVDP--GFAG 143 (231)
T ss_dssp CGGGC---------TTTH---HHHHHHHHHTTCEEEEEE--CTTCCGGGGTTTG----G---GCSEEEEESSCT--TCSS
T ss_pred CcccC---------CccH---HHHHHHHHHcCCeEEEEE--ECCCcHHHHHHHH----h---cCCEEEEeeecc--CcCC
Confidence 77662 0122 366788889998866644 2333322222222 2 156666666555 4332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----CcceeecCcccccChhHHHhhhhcCccccccC-CccccCCCCC-hhHHHHHHH
Q 016605 281 QDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTG-EKLLTTPNND-FDADQLMFK 354 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp----~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g-~~~~t~~~~~-~~~~~~~i~ 354 (386)
+...+ +..+ .+...|.+.+ +..+.+.+| +..+.......+|||.++.| ..+... .+ +.+.++.++
T Consensus 144 Q~f~~-~~l~---kI~~lr~~~~~~~~~~~I~VdGG---I~~~~~~~~~~aGAd~~V~G~saif~~--~d~~~~~~~~l~ 214 (231)
T 3ctl_A 144 QPFIP-EMLD---KLAELKAWREREGLEYEIEVDGS---CNQATYEKLMAAGADVFIVGTSGLFNH--AENIDEAWRIMT 214 (231)
T ss_dssp CCCCT-THHH---HHHHHHHHHHHHTCCCEEEEESC---CSTTTHHHHHHHTCCEEEECTTTTGGG--CSSHHHHHHHHH
T ss_pred ccccH-HHHH---HHHHHHHHHhccCCCceEEEECC---cCHHHHHHHHHcCCCEEEEccHHHhCC--CCcHHHHHHHHH
Confidence 12222 2222 2233333322 333445543 33344466788999999999 643322 23 555555554
Q ss_pred H
Q 016605 355 V 355 (386)
Q Consensus 355 ~ 355 (386)
+
T Consensus 215 ~ 215 (231)
T 3ctl_A 215 A 215 (231)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.34 Score=46.00 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC-hhhHHHHHHHHHHHhhcCcEEEE--ecCCC-----CHHHHHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVCC--TLGML-----EKHQAIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge-~~~~~~l~~~i~~ik~~g~~i~~--t~g~l-----~~e~l~~Lk~a 193 (386)
-+.++..+.++.+.+.|+++|+.+- ..+.+. ....+.+.++++.+++.|+++.+ ++..+ +.+.++.|++.
T Consensus 38 ~~~~~~~~Yi~~a~~~Gf~~IFTSL--~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~l 115 (385)
T 1x7f_A 38 STKEKDMAYISAAARHGFSRIFTCL--LSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAEL 115 (385)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEE--CCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEccC--CccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc
Confidence 3677888999999999999885432 111122 24567888888989999999643 44443 33678899999
Q ss_pred ccCeeecc--cCchHHHHhhhCCCCCHHHHHHHHHHHH-HcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCC-eEee
Q 016605 194 GLTAYNHN--LDTSREFYSKIITTRSYDERLETLKHVR-EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPE-SVPI 269 (386)
Q Consensus 194 G~~~v~i~--le~~~~~~~~i~~~~s~~~~l~~i~~a~-~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~-~v~~ 269 (386)
|++.+-+. +..- + ..+..+ ..|+++..+.-. +.+++..+ .+.+.+.+ ....
T Consensus 116 Gi~gLRLD~Gf~~~-e----------------ia~ls~n~~glkIeLNASt----~~~~l~~l----~~~~~n~~~l~ac 170 (385)
T 1x7f_A 116 GADGIRLDVGFDGL-T----------------EAKMTNNPYGLKIELNVSN----DIAYLENI----LSHQANKSALIGC 170 (385)
T ss_dssp TCSEEEESSCCSSH-H----------------HHHHTTCTTCCEEEEETTS----CSSHHHHH----TTSSCCGGGEEEE
T ss_pred CCCEEEEcCCCCHH-H----------------HHHHhcCCCCCEEEEeCcC----CHHHHHHH----HHcCCChHHeEEe
Confidence 99988763 3221 1 111111 235655444322 22333333 33332222 3467
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIV 301 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~ 301 (386)
+.|.|.|.|-+ +.+.+.+.-+..+.+
T Consensus 171 HNFYPr~~TGL------s~~~f~~~n~~~k~~ 196 (385)
T 1x7f_A 171 HNFYPQKFTGL------PYDYFIRCSERFKKH 196 (385)
T ss_dssp CCCBCSTTCSB------CHHHHHHHHHHHHHT
T ss_pred eccCCCCCCCC------CHHHHHHHHHHHHHC
Confidence 77878776654 556666655555543
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.28 E-value=1.6 Score=40.13 Aligned_cols=195 Identities=12% Similarity=0.108 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHH--hccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK--AGLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~--aG~~~v 198 (386)
.+.+++++.+++..+.|.+-+-+.+|. ....+...+.++...++.+++ .++++++. ....+.++.-.+ +|.+-|
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~-~~v~~~eem~rvv~~i~~~~~~~~vpisID--T~~~~V~eaaL~~~~Ga~iI 110 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDD-GLLDARTEMTTFLNLIMSEPEIARVPVMID--SSKWEVIEAGLKCLQGKSIV 110 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCC-TTSCHHHHHHHHHHHHHTCHHHHTSCEEEE--CSCHHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhhhcCCCeEEEe--CCCHHHHHHHHHhcCCCCEE
Confidence 578999999999999999877776643 222333455667776665543 35565543 356788887777 687766
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHHHHHHHHHH-----hcCCCCCCeEeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLHTL-----ATLPTHPESVPIN 270 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~l~~l-----~~l~~~~~~v~~~ 270 (386)
+ ++.+.. -++..+.+..+.++|..+..-.+ -|...|.++..++.+.+ .+.|..++.+.+-
T Consensus 111 NdIs~~~~------------d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilD 178 (300)
T 3k13_A 111 NSISLKEG------------EEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFD 178 (300)
T ss_dssp EEECSTTC------------HHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred EeCCcccC------------ChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 5 333221 11223556778889987555334 46666777765555333 4455333445554
Q ss_pred eeeecCCCCCCCCCC---CCHHHHHHHHHHHHHhCCCcceeecCcccccChh------------HHHhhhhcCccccccC
Q 016605 271 ALLAVKGTPLQDQKP---VEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP------------EQALCFLAGANSIFTG 335 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~---~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~------------~~~~~l~~Gan~~~~g 335 (386)
+.+- ++..... -...++++.+...+..+|...+-+..++.+++-+ .-.++..+|.+..+.+
T Consensus 179 Pgig----~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~R~~~n~~fl~~ai~~Gld~~Ivn 254 (300)
T 3k13_A 179 PNVL----AVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIVN 254 (300)
T ss_dssp CCCC----CCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCC----ccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCCcchhHHHHHHHHHHHHHcCCCEEecC
Confidence 4331 2322111 1145566666666756766433333333333321 3355677888877544
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.94 Score=40.14 Aligned_cols=205 Identities=12% Similarity=0.062 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
..+.++.+.+.|++.+.+..... .+ .......+.++.+++ .++++.+..|..+.+.++.+.++|+|.+.++-...
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~--~~--~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l 107 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITA--SV--EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAV 107 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSC--SS--SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCch--hh--cCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHH
Confidence 34455666778998887764211 11 133456777788874 47888888888889999999999999998865443
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeEe------EEeecCCCH---HHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 206 REFYSKIITTRSYDERLETLKHVRE--AGINVCSG------GIIGLGEAE---EDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~--~Gi~v~~~------~i~Glget~---ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+ +++...+.++.+.. ..+.+.+. .+.-.|... .+..+.++.+.+++ ++.+.++...+
T Consensus 108 ~----------~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~ 175 (253)
T 1thf_D 108 E----------NPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLTSIDR 175 (253)
T ss_dssp H----------CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEETTT
T ss_pred h----------ChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCC--CCEEEEEeccC
Confidence 1 11222233333221 11222321 111123211 12445555556665 55555543222
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHH
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 354 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~ 354 (386)
. ++. ..++.+.+.++ +... +..+-..+| ++- ++.-...+.+||+.++.|..+. ....++++.++.++
T Consensus 176 ~-g~~----~g~~~~~~~~l----~~~~-~ipvia~GG-I~~-~~d~~~~~~~Gadgv~vGsal~-~~~~~~~~~~~~l~ 242 (253)
T 1thf_D 176 D-GTK----SGYDTEMIRFV----RPLT-TLPIIASGG-AGK-MEHFLEAFLAGADAALAASVFH-FREIDVRELKEYLK 242 (253)
T ss_dssp T-TSC----SCCCHHHHHHH----GGGC-CSCEEEESC-CCS-HHHHHHHHHTTCSEEEESHHHH-TTCSCHHHHHHHHH
T ss_pred C-CCC----CCCCHHHHHHH----HHhc-CCCEEEECC-CCC-HHHHHHHHHcCChHHHHHHHHH-cCCCCHHHHHHHHH
Confidence 1 221 22333332222 2222 211222222 221 1223445578999999887444 33337999999999
Q ss_pred HcCCCc
Q 016605 355 VLGLTP 360 (386)
Q Consensus 355 ~~G~~p 360 (386)
+.|+..
T Consensus 243 ~~g~~~ 248 (253)
T 1thf_D 243 KHGVNV 248 (253)
T ss_dssp HTTCCC
T ss_pred HcCCcc
Confidence 999643
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.34 Score=45.01 Aligned_cols=210 Identities=12% Similarity=0.075 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC--C-CCChhhH-HHHHHHHHHHhhcCcEEEEecCCCCHHHHHHH---HHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD--T-IGRKTNF-NQILEYVKDIRDMGMEVCCTLGMLEKHQAIEL---KKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~--~-~ge~~~~-~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~L---k~a 193 (386)
.++.++.++.++.+.+.|++.+-++....+ + .+.+... .+.++.++..+...+...+.+....++.++.+ ..+
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~~e~l~~i~~~~~~~~~~L~r~~~~~~~dv~~~~~a~~~ 99 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTPVSVLKHLRNISTKKIAIMLNEKNTTPEDLNHLLLPIIG 99 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCCHHHHHHHHHHCCSEEEEEEEGGGCCGGGHHHHHGGGTT
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccChHHHHHHHhhccCCeEEEEecCCCCChhhHHHHHHhhhc
Confidence 389999999999999999998877632110 0 0001110 12223333322222223333322222334444 346
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
|++.+.+..+ .+..++..+.++.+++.|+.+...+.+.-+.+..+ ..+..+.++..+++.+.
T Consensus 100 Gvd~~ri~~~-----------~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~--~~l~~~~~~~~G~~~i~----- 161 (320)
T 3dxi_A 100 LVDMIRIAID-----------PQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMN--GFLSKLKAIDKIADLFC----- 161 (320)
T ss_dssp TCSEEEEEEC-----------GGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGST--TSGGGGGGGTTTCSEEE-----
T ss_pred CCCEEEEEec-----------HHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHH--HHHHHHHHhhCCCCEEE-----
Confidence 8887776431 12478888999999999999877776532222111 22223332211133332
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---ccCCccccCCCCChhHH
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDAD 349 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~~ 349 (386)
.++|- ...++.+..+++...+..++- .+.+-+ .-.++.-.....++.+||+.+ +.|-. ..+.+.+.+++
T Consensus 162 -l~Dt~----G~~~P~~~~~lv~~l~~~~~~-~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG-~~~GN~~~E~l 234 (320)
T 3dxi_A 162 -MVDSF----GGITPKEVKNLLKEVRKYTHV-PVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMG-RGAGNLKMELL 234 (320)
T ss_dssp -EECTT----SCCCHHHHHHHHHHHHHHCCS-CEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCS-STTCBCBHHHH
T ss_pred -ECccc----CCCCHHHHHHHHHHHHHhCCC-eEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccC-CcccchhHHHH
Confidence 22332 224678888888888877752 232221 111222233466888999987 22210 12566889999
Q ss_pred HHHHHH
Q 016605 350 QLMFKV 355 (386)
Q Consensus 350 ~~~i~~ 355 (386)
+.+++.
T Consensus 235 v~~L~~ 240 (320)
T 3dxi_A 235 LTYLNK 240 (320)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999987
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.95 Score=49.54 Aligned_cols=213 Identities=8% Similarity=-0.011 Sum_probs=130.5
Q ss_pred CCHHHHHHHHHHHHHcC--CcEEEEecccCCC-----CCChhhHHHHHHHHHHHhhcCcEEEEe----cCC------CCH
Q 016605 122 MTKDAVMQAAQKAKEAG--STRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEK 184 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G--~~~v~l~~g~~~~-----~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~------l~~ 184 (386)
++.++.++.++.+.+.| +..+-+.||...+ .+ ...++.+.++.+.+++.-+..... .|. ...
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~-~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~ 648 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLT-EDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVK 648 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHC-CCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcC-CCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHH
Confidence 89999999999999985 5456554432211 01 123445555555554432333332 132 234
Q ss_pred HHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--------CCCHHHHHHHHHH
Q 016605 185 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--------GEAEEDRVGLLHT 256 (386)
Q Consensus 185 e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--------get~ed~~~~l~~ 256 (386)
+.++...++|++.+.+. .+. .+.+....+++.+++.|..+...+.+.. ..+.+.+.++++.
T Consensus 649 ~~i~~a~~~g~d~irif-~sl----------~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~ 717 (1165)
T 2qf7_A 649 YFVRQAAKGGIDLFRVF-DCL----------NWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVE 717 (1165)
T ss_dssp HHHHHHHHHTCCEEEEE-CTT----------CCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHH
T ss_pred HHHHHHHhcCcCEEEEE-eeH----------HHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHH
Confidence 67888899999998773 221 2345666888999999988777665541 1467888999999
Q ss_pred HhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---
Q 016605 257 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 257 l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
+.+.| ++.+.+ ++|- ....+.++.+++...+..+ +..+.+.+ .-.++.-.....++.+||+.+
T Consensus 718 ~~~~G--a~~i~l------~DT~----G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~t 784 (1165)
T 2qf7_A 718 LEKAG--AHIIAV------KDMA----GLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAA 784 (1165)
T ss_dssp HHHTT--CSEEEE------EETT----CCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCEEEE------eCcc----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEec
Confidence 99997 554433 2332 2346788888888777666 33333321 111222233467889999987
Q ss_pred ccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 333 FTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 333 ~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
+.|-. ..+.+.+.++++.+++..|+.+
T Consensus 785 i~GlG-e~~Gn~~le~vv~~L~~~g~~t 811 (1165)
T 2qf7_A 785 MDALS-GNTSQPCLGSIVEALSGSERDP 811 (1165)
T ss_dssp CGGGC-SBTSCCBHHHHHHHHTTSTTCC
T ss_pred ccccC-CCccchhHHHHHHHHHhcCCCc
Confidence 22210 1256778899999998887653
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.55 Score=47.60 Aligned_cols=226 Identities=14% Similarity=0.050 Sum_probs=125.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEE--EEecCC-CCHHHHHHHHHhcc
Q 016605 120 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEV--CCTLGM-LEKHQAIELKKAGL 195 (386)
Q Consensus 120 ~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i--~~t~g~-l~~e~l~~Lk~aG~ 195 (386)
..++.++-++.++.+.+.|++.|-.+. |.. .|..++.+..+++... ..+..+ ++.+-. .-+..++.++.+|.
T Consensus 88 ~~~s~eeKl~Ia~~L~~lGVd~IEaGf---P~a-sp~D~e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~a~~ 163 (644)
T 3hq1_A 88 DPMSPARKRRMFDLLVRMGYKEIEVGF---PSA-SQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAPR 163 (644)
T ss_dssp SCCCHHHHHHHHHHHHHHTCSEEEEEC---TTT-CHHHHHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTCSE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCC-ChhHHHHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhcCCC
Confidence 348999999999999999999886543 222 2444444433333211 013343 222211 11344556677888
Q ss_pred CeeecccCchH-HHHhhhCCCCCHHHHHH----HHHHHHHcCC---eeeEeEEeec----CCCHHHHHHHHHHHhcCCC-
Q 016605 196 TAYNHNLDTSR-EFYSKIITTRSYDERLE----TLKHVREAGI---NVCSGGIIGL----GEAEEDRVGLLHTLATLPT- 262 (386)
Q Consensus 196 ~~v~i~le~~~-~~~~~i~~~~s~~~~l~----~i~~a~~~Gi---~v~~~~i~Gl----get~ed~~~~l~~l~~l~~- 262 (386)
+.|.+.+-+.+ -...++ +.+.++.++ .++.+++.+- .+...+.|+. .-+.+-+.+.++.+.+.+.
T Consensus 164 ~~Vhif~stSd~h~~~~l--~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~eaG~~ 241 (644)
T 3hq1_A 164 AIVHFYNSTSILQRRVVF--RANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAP 241 (644)
T ss_dssp EEEEEEEECCHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHhcCC
Confidence 88888777763 233333 456666655 4445555542 2233444543 2366777788888876531
Q ss_pred CCCe-EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---cceeecC-cccccChhHHHhhhhcCcccc---cc
Q 016605 263 HPES-VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FT 334 (386)
Q Consensus 263 ~~~~-v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~---~~i~i~~-g~~~~~~~~~~~~l~~Gan~~---~~ 334 (386)
.++. +.++ .|.|- ...++.++.+++...+..+|+ ..+.+.+ .-.++.-.....++.+||+.+ +.
T Consensus 242 Gad~~~~I~----LpDTv----G~~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAvANslaAv~AGA~~Vdgti~ 313 (644)
T 3hq1_A 242 TPERPIIFN----LPATV----EMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLF 313 (644)
T ss_dssp CSSSCEEEE----EEESS----CCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGG
T ss_pred CCCceeEEE----ecCCC----cccCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHHHHHHHHHHhCCCEEEecCC
Confidence 1332 1121 23442 235678888888877777764 2222211 111222223467889999987 22
Q ss_pred CCccccCCCCChhHHHHHHHHcCCCc
Q 016605 335 GEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 335 g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
|- =..+++.+.++++.+++..|+.+
T Consensus 314 G~-GERaGNa~LE~lv~~L~~~Gi~t 338 (644)
T 3hq1_A 314 GN-GERTGNVCLVTLGLNLFSRGVDP 338 (644)
T ss_dssp GC-SSTTCBCBHHHHHHHHHTTTCCC
T ss_pred CC-CccccCccHHHHHHHHHhcccCC
Confidence 21 01256678888888888888764
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.82 E-value=2.1 Score=38.34 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CCh-------------hhHHHHHHHHHHHhhc--CcEEEEecCCCC---
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRDM--GMEVCCTLGMLE--- 183 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~-------------~~~~~l~~~i~~ik~~--g~~i~~t~g~l~--- 183 (386)
+.++.++.++.+.+.|++.+.++.-..++. ..| ...+.++++++++++. .+++..- +..+
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m-~y~n~v~ 107 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM-TYYNPIF 107 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-CCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-ecCcHHH
Confidence 457788888899999999887753221111 011 1224677888988854 5665331 2221
Q ss_pred ----HHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 184 ----KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 184 ----~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
+..++.++++|++.+.+. .-.+++..+.++.+++.|+.+- .++....+.+.+........
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii~-------------dl~~ee~~~~~~~~~~~gl~~i--~l~~p~t~~~rl~~ia~~a~- 171 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIVP-------------DLPPEEAEELKAVMKKYVLSFV--PLGAPTSTRKRIKLICEAAD- 171 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEECT-------------TCCHHHHHHHHHHHHHTTCEEC--CEECTTCCHHHHHHHHHHCS-
T ss_pred HhhHHHHHHHHHHcCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCcEE--EEeCCCCCHHHHHHHHHhCC-
Confidence 577888999999987762 1234677778888999998641 22222334444444443321
Q ss_pred CCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcc
Q 016605 260 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 260 l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ 338 (386)
..+........-|.. .+.+..+..++++..|... +..+-+. .++....+...+.+||+.++.|..+
T Consensus 172 -----gfiy~vs~~g~TG~~----~~~~~~~~~~~v~~vr~~~-~~pv~vG---~GI~t~e~~~~~~~gADgvIVGSai 237 (262)
T 2ekc_A 172 -----EMTYFVSVTGTTGAR----EKLPYERIKKKVEEYRELC-DKPVVVG---FGVSKKEHAREIGSFADGVVVGSAL 237 (262)
T ss_dssp -----SCEEEESSCC-------------CHHHHHHHHHHHHHC-CSCEEEE---SSCCSHHHHHHHHTTSSEEEECHHH
T ss_pred -----CCEEEEecCCccCCC----CCcCcccHHHHHHHHHhhc-CCCEEEe---CCCCCHHHHHHHHcCCCEEEECHHH
Confidence 122121211122222 1122134456666666655 2222222 2334233455688999999988643
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.82 Score=42.17 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC--------hhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR--------KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge--------~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~ 192 (386)
.+++++++.+++..+.|.+-+-+++-.+-++.+ ....+++...|+.+++. ++.+++ .....+.++.-.+
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISI--DT~~~~Va~aAl~ 123 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISV--DTSRPRVMREAVN 123 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEE--ECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEE--eCCCHHHHHHHHH
Confidence 689999999999999999877776533333222 23445677788887753 555544 4467888888888
Q ss_pred hccCeee
Q 016605 193 AGLTAYN 199 (386)
Q Consensus 193 aG~~~v~ 199 (386)
+|.+.|+
T Consensus 124 aGa~iIN 130 (314)
T 3tr9_A 124 TGADMIN 130 (314)
T ss_dssp HTCCEEE
T ss_pred cCCCEEE
Confidence 8888776
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.52 E-value=1.9 Score=38.96 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|...+.+.+......|. .+++ +.++ ..++++....+..++.++.+.+.+|.|.|.+....+
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~Gs---~~~L----~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L- 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQGA---PEFL----TAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASV- 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTCCC---HHHH----HHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS-
T ss_pred HHHHHHHHHCCCCEEEEeccccccCCC---HHHH----HHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEccccc-
Confidence 444566677899888776532222232 2322 3444 346777766677888899999999999999865433
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCC
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 286 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~ 286 (386)
+.++..+.++.+++.|+.+-+.+ .|.+|+ +.+.+++ ++.++++.-.. +.+ .+
T Consensus 154 ----------~~~~l~~l~~~a~~lGl~~lvev-----h~~eEl----~~A~~~g--a~iIGinnr~l---~t~----~~ 205 (272)
T 3tsm_A 154 ----------DDDLAKELEDTAFALGMDALIEV-----HDEAEM----ERALKLS--SRLLGVNNRNL---RSF----EV 205 (272)
T ss_dssp ----------CHHHHHHHHHHHHHTTCEEEEEE-----CSHHHH----HHHTTSC--CSEEEEECBCT---TTC----CB
T ss_pred ----------CHHHHHHHHHHHHHcCCeEEEEe-----CCHHHH----HHHHhcC--CCEEEECCCCC---ccC----CC
Confidence 23445566778888998633222 366664 3444675 78888875321 111 23
Q ss_pred CHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCcccc
Q 016605 287 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT 340 (386)
Q Consensus 287 s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t 340 (386)
+.+...++. ..+|...+-++.+-+. .++.......+||+.++.|+.+..
T Consensus 206 dl~~~~~L~----~~ip~~~~vIaesGI~-t~edv~~l~~~Ga~gvLVG~almr 254 (272)
T 3tsm_A 206 NLAVSERLA----KMAPSDRLLVGESGIF-THEDCLRLEKSGIGTFLIGESLMR 254 (272)
T ss_dssp CTHHHHHHH----HHSCTTSEEEEESSCC-SHHHHHHHHTTTCCEEEECHHHHT
T ss_pred ChHHHHHHH----HhCCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcHHHcC
Confidence 334333333 2345433444432232 234345667889999999985543
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.57 Score=42.91 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~----ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
.+.+.+++.+++..+.|.+-+-+++-.+-++ .+....+++...|+.+++.++.+++ .....+.++.-.++|.+.
T Consensus 49 ~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSI--DT~~~~Va~aAl~aGa~i 126 (294)
T 2dqw_A 49 LDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSV--DTRKPEVAEEALKLGAHL 126 (294)
T ss_dssp ----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEE--ECSCHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--ECCCHHHHHHHHHhCCCE
Confidence 6788999999999999998877766222221 2235667888888888754555443 334566666666667665
Q ss_pred ee
Q 016605 198 YN 199 (386)
Q Consensus 198 v~ 199 (386)
|+
T Consensus 127 IN 128 (294)
T 2dqw_A 127 LN 128 (294)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.72 Score=42.25 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=61.4
Q ss_pred eeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCC----CChhhHHH
Q 016605 85 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQ 160 (386)
Q Consensus 85 ~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~----ge~~~~~~ 160 (386)
+..+.+++|+ |+- +|+. + .+..+.+.+++.+++..+.|.+-+-+++-.+-++ .+...+++
T Consensus 22 ~~~iMgilNv-TPD--------SFsd----g---g~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~R 85 (294)
T 2y5s_A 22 RPLVMGILNA-TPD--------SFSD----G---GRFLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELAR 85 (294)
T ss_dssp SCEEEEEEEC-CC-------------------------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHH
T ss_pred CceEEEEEeC-CCC--------CCCC----C---CCcCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHH
Confidence 3456778887 543 3331 1 1236789999999999999998887766222222 22355677
Q ss_pred HHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 161 ILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 161 l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
+...|+.+++.++.+++ .....+.++.-.++|.+-|+
T Consensus 86 v~pvi~~l~~~~vpiSI--DT~~~~Va~aAl~aGa~iIN 122 (294)
T 2y5s_A 86 VIPLVEALRPLNVPLSI--DTYKPAVMRAALAAGADLIN 122 (294)
T ss_dssp HHHHHHHHGGGCSCEEE--ECCCHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhhCCCeEEE--ECCCHHHHHHHHHcCCCEEE
Confidence 88888888755555544 34668888888888887776
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=1.5 Score=39.41 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
.+.+.+++.++++.+.|++-+-++|-.+-|+.+ ...++++...|+.+++.++.++ ..+...+.++.-.++|++.
T Consensus 27 ~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iS--IDT~~~~Va~~al~aGa~i 104 (270)
T 4hb7_A 27 NNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKIS--VDTFRSEVAEACLKLGVDM 104 (270)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEE--EECSCHHHHHHHHHHTCCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEE--EECCCHHHHHHHHHhccce
Confidence 688999999999999999877776543333322 2445678888888876555543 3456788888888888887
Q ss_pred ee
Q 016605 198 YN 199 (386)
Q Consensus 198 v~ 199 (386)
|+
T Consensus 105 IN 106 (270)
T 4hb7_A 105 IN 106 (270)
T ss_dssp EE
T ss_pred ec
Confidence 77
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.16 E-value=1.6 Score=41.25 Aligned_cols=77 Identities=9% Similarity=0.025 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhcCcEEEEe--cCC-----CCHHHHHHHHHhc
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGMEVCCT--LGM-----LEKHQAIELKKAG 194 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~g~~i~~t--~g~-----l~~e~l~~Lk~aG 194 (386)
+.++..+.++.+.+.|+++|+..- ..+.+++ ...+.+.++++.+++.|+++.+. +.. .+.+.++.|++.|
T Consensus 15 ~~~~~~~yi~~a~~~Gf~~IFTSL--~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lG 92 (372)
T 2p0o_A 15 ITNDTIIYIKKMKALGFDGIFTSL--HIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIELG 92 (372)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEE--CCC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEccC--CccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 456777889999999999886432 2222222 45678888999999999996543 211 2456677888999
Q ss_pred cCeeecc
Q 016605 195 LTAYNHN 201 (386)
Q Consensus 195 ~~~v~i~ 201 (386)
++.+-+.
T Consensus 93 i~glRLD 99 (372)
T 2p0o_A 93 VTGLRMD 99 (372)
T ss_dssp CCEEEEC
T ss_pred CCEEEEc
Confidence 9887763
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.77 Score=41.81 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+++++++.+++..+.|.+-+-+.+..+-++.+ ....+.+...++.+++. ++.+++ .....+.++.-.++|.+
T Consensus 35 ~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSI--DT~~~~va~aAl~aGa~ 112 (282)
T 1aj0_A 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISV--DTSKPEVIRESAKVGAH 112 (282)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE--ECCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEE--eCCCHHHHHHHHHcCCC
Confidence 688999999999999999888787633322211 24556778888888743 666544 33557777777777777
Q ss_pred eee-cccCchHHHHhh---hC--------C--CCC--------------HHHHHHHHHHHHHcCCe---eeEeEEeecCC
Q 016605 197 AYN-HNLDTSREFYSK---II--------T--TRS--------------YDERLETLKHVREAGIN---VCSGGIIGLGE 245 (386)
Q Consensus 197 ~v~-i~le~~~~~~~~---i~--------~--~~s--------------~~~~l~~i~~a~~~Gi~---v~~~~i~Glge 245 (386)
.|+ ++-...++.++. .. + +.+ .+...+.++.+.++|+. +-.+--+|++.
T Consensus 113 iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~k 192 (282)
T 1aj0_A 113 IINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGK 192 (282)
T ss_dssp EEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCccc
Confidence 665 222111111111 00 0 011 34445566667777775 56665556666
Q ss_pred CHHHHHHHHHHHhcC
Q 016605 246 AEEDRVGLLHTLATL 260 (386)
Q Consensus 246 t~ed~~~~l~~l~~l 260 (386)
+.++-.++++.+..+
T Consensus 193 ~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 193 NLSHNYSLLARLAEF 207 (282)
T ss_dssp CHHHHHHHHHTGGGG
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666555544
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=93.91 E-value=2.4 Score=38.17 Aligned_cols=185 Identities=13% Similarity=0.092 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChh-------------hHHHHHHHHHHHhhc--CcEEEEe---cCC--
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-------------NFNQILEYVKDIRDM--GMEVCCT---LGM-- 181 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~-------------~~~~l~~~i~~ik~~--g~~i~~t---~g~-- 181 (386)
+++...+.++.+.+.|++-+.++--..+|. ..|. ..+.++++++++++. .+++..- |-.
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~ 109 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFA 109 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 567788888888889998877753221111 1121 123678899998853 4554221 111
Q ss_pred -CCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 182 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 182 -l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
-.+..++.++++|+|.+.+.- -.+++..+.++.+++.|+.. .+++...-+.+.+....+..
T Consensus 110 ~g~e~f~~~~~~aGvdgvii~D-------------lp~ee~~~~~~~~~~~gl~~--i~liaP~t~~eri~~i~~~~--- 171 (267)
T 3vnd_A 110 NGIDEFYTKAQAAGVDSVLIAD-------------VPVEESAPFSKAAKAHGIAP--IFIAPPNADADTLKMVSEQG--- 171 (267)
T ss_dssp HCHHHHHHHHHHHTCCEEEETT-------------SCGGGCHHHHHHHHHTTCEE--ECEECTTCCHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHcCCCEEEeCC-------------CCHhhHHHHHHHHHHcCCeE--EEEECCCCCHHHHHHHHHhC---
Confidence 137789999999999987731 12234456677889999874 22332333444333333222
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHh-hhhcCccccccCCc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL-CFLAGANSIFTGEK 337 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~-~l~~Gan~~~~g~~ 337 (386)
..++......+.-|.. .....+ ....+...|...+ +++..| .++....+.. .+.+||+.++.|..
T Consensus 172 ---~gfvY~vS~~GvTG~~--~~~~~~---~~~~v~~vr~~~~---~pv~vG-fGI~~~e~~~~~~~~gADgvVVGSa 237 (267)
T 3vnd_A 172 ---EGYTYLLSRAGVTGTE--SKAGEP---IENILTQLAEFNA---PPPLLG-FGIAEPEQVRAAIKAGAAGAISGSA 237 (267)
T ss_dssp ---CSCEEESCCCCCC----------C---HHHHHHHHHTTTC---CCEEEC-SSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred ---CCcEEEEecCCCCCCc--cCCcHH---HHHHHHHHHHhcC---CCEEEE-CCcCCHHHHHHHHHcCCCEEEECHH
Confidence 2244444444433433 111122 3444555555432 122211 2343333444 78899999999863
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=93.48 E-value=1.4 Score=38.96 Aligned_cols=206 Identities=13% Similarity=0.067 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+.+..... .+ ......++.++.+++ .++++....|..+.+.++.+.++|++.+.++-..
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~--~~--~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~ 107 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISA--TH--EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA 107 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCS--ST--TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCc--cc--cCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 345555666677988887763211 11 123445677777774 4788888888889999999999999999886543
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeE--------EeecCCCH---HHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 205 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG--------IIGLGEAE---EDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~--------i~Glget~---ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
+++ .+...+..+.+....+.+.+.+ +.-.|... .+..+.++.+.+++ +..+.++...
T Consensus 108 l~~----------p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~ 175 (252)
T 1ka9_F 108 VRR----------PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTSMD 175 (252)
T ss_dssp HHC----------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEETT
T ss_pred HhC----------cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcC--CCEEEEeccc
Confidence 310 1112222222211112222222 11123211 12344445555555 5444443211
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHH
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i 353 (386)
..|+. ..++.+.+ ...+...+- .+ +..|-++-..+. ...+..||+.++.|..+. ....++++..+.+
T Consensus 176 -~~g~~----~g~~~~~i----~~l~~~~~i-pv-ia~GGI~~~~d~-~~~~~~Gadgv~vgsal~-~~~~~~~~~~~~l 242 (252)
T 1ka9_F 176 -RDGTK----EGYDLRLT----RMVAEAVGV-PV-IASGGAGRMEHF-LEAFQAGAEAALAASVFH-FGEIPIPKLKRYL 242 (252)
T ss_dssp -TTTTC----SCCCHHHH----HHHHHHCSS-CE-EEESCCCSHHHH-HHHHHTTCSEEEESHHHH-TTSSCHHHHHHHH
T ss_pred -CCCCc----CCCCHHHH----HHHHHHcCC-CE-EEeCCCCCHHHH-HHHHHCCCHHHHHHHHHH-cCCCCHHHHHHHH
Confidence 11221 22333332 222222221 11 222212211232 345567999998887433 3445899999999
Q ss_pred HHcCCCc
Q 016605 354 KVLGLTP 360 (386)
Q Consensus 354 ~~~G~~p 360 (386)
++.|...
T Consensus 243 ~~~~~~~ 249 (252)
T 1ka9_F 243 AEKGVHV 249 (252)
T ss_dssp HHTTCCB
T ss_pred HHCCCCc
Confidence 9999643
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=93.18 E-value=4.7 Score=36.39 Aligned_cols=186 Identities=15% Similarity=0.212 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhc--CcEEEE-----ecCCCCHHHHHHHHHhccCeeeccc------Cch-HHHHhhhCCCCCHHHHHHH
Q 016605 159 NQILEYVKDIRDM--GMEVCC-----TLGMLEKHQAIELKKAGLTAYNHNL------DTS-REFYSKIITTRSYDERLET 224 (386)
Q Consensus 159 ~~l~~~i~~ik~~--g~~i~~-----t~g~l~~e~l~~Lk~aG~~~v~i~l------e~~-~~~~~~i~~~~s~~~~l~~ 224 (386)
+..+++.+++-.. ++++.. .++......++.||++|+..+ ++. |+. ++.++. .+-++++-.+.
T Consensus 79 ~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE--~gm~~~~eve~ 155 (286)
T 2p10_A 79 QIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEE--TGMSYAQEVEM 155 (286)
T ss_dssp HHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHH--TTCCHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhh--cCCCHHHHHHH
Confidence 4566666665422 445422 245567888999999998887 443 332 333332 35689999999
Q ss_pred HHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHH----HHHHHHHHHH
Q 016605 225 LKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE----MIRMIATARI 300 (386)
Q Consensus 225 i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e----~~~~~a~~R~ 300 (386)
|+.+++.|+.+.. + -.|.++...+. +++ +|.+-+++=.-.. -.+......+.++ ..+++..++.
T Consensus 156 I~~A~~~gL~Ti~-~----v~~~eeA~amA----~ag--pDiI~~h~glT~g-glIG~~~avs~~~~~e~i~~i~~a~~~ 223 (286)
T 2p10_A 156 IAEAHKLDLLTTP-Y----VFSPEDAVAMA----KAG--ADILVCHMGLTTG-GAIGARSGKSMDDCVSLINECIEAART 223 (286)
T ss_dssp HHHHHHTTCEECC-E----ECSHHHHHHHH----HHT--CSEEEEECSCC----------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEE-e----cCCHHHHHHHH----HcC--CCEEEECCCCCCC-CcccCCCcccHHHhHHHHHHHHHHHHH
Confidence 9999999995322 2 24777776654 443 6666554311011 1122223345544 4445667788
Q ss_pred hCCCcceeecCcccccChhHHHhhhhc--CccccccCCccccCC-CCChhHHHHHHHHcCCCc
Q 016605 301 VMPKAMVRLSAGRVRFSMPEQALCFLA--GANSIFTGEKLLTTP-NNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 301 ~lp~~~i~i~~g~~~~~~~~~~~~l~~--Gan~~~~g~~~~t~~-~~~~~~~~~~i~~~G~~p 360 (386)
..|+.++-..+|=+.- ++..+..+.. |++.++..+.+.... .....+..+-++...+.|
T Consensus 224 vnpdvivLc~gGpIst-peDv~~~l~~t~G~~G~~gASsier~p~e~ai~~~~~~fk~~~~~~ 285 (286)
T 2p10_A 224 IRDDIIILSHGGPIAN-PEDARFILDSCQGCHGFYGASSMERLPAEEAIRSQTLAFKAIRRQP 285 (286)
T ss_dssp HCSCCEEEEESTTCCS-HHHHHHHHHHCTTCCEEEESHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hCCCcEEEecCCCCCC-HHHHHHHHhcCCCccEEEeehhhhcCCHHHHHHHHHHHHHhcccCC
Confidence 8888644333333332 3334566666 899987775443322 234455566666666665
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.55 Score=41.37 Aligned_cols=199 Identities=15% Similarity=0.105 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec-ccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecC-CCCHHHHHHHHHhccCeeec
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGA-AWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLG-MLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~-g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g-~l~~e~l~~Lk~aG~~~v~i 200 (386)
...+.+.++.+.+.|++-+.+.- .++.. | ....-.+.++.+++. ..++.+..= .-.++.++.+.++|+|.+.+
T Consensus 16 ~~~l~~~i~~~~~~Gad~ihldi~DG~fv---p-~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 16 FSRLGEEIKAVDEAGADWIHVDVMDGRFV---P-NITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp GGGHHHHHHHHHHTTCSEEEEEEEBSSSS---S-CBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEE
T ss_pred HhHHHHHHHHHHHcCCCEEEEEEEecCCC---c-chhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEE
Confidence 34455566666778888765521 11110 0 111123666666653 333211110 11245789999999999999
Q ss_pred ccC--chHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 201 NLD--TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 201 ~le--~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
..+ .. +...+.++.+++.|+.+...+ ... |..+.. +.+.. .++.+.+....|..+.
T Consensus 92 h~e~~~~-------------~~~~~~~~~i~~~g~~~gv~~--~p~-t~~e~~---~~~~~---~~D~v~~msv~pg~gg 149 (230)
T 1tqj_A 92 HVEHNAS-------------PHLHRTLCQIRELGKKAGAVL--NPS-TPLDFL---EYVLP---VCDLILIMSVNPGFGG 149 (230)
T ss_dssp ECSTTTC-------------TTHHHHHHHHHHTTCEEEEEE--CTT-CCGGGG---TTTGG---GCSEEEEESSCC----
T ss_pred Ccccccc-------------hhHHHHHHHHHHcCCcEEEEE--eCC-CcHHHH---HHHHh---cCCEEEEEEeccccCC
Confidence 876 42 122356677788898765543 222 333322 22222 2567777776664332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
....+...+.+.++.+.....-.+..+.+.+| ++ .+.......+|||.++.|..+... .++++..+.+++
T Consensus 150 --q~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GG-I~--~~~~~~~~~aGad~vvvGSai~~a--~d~~~~~~~l~~ 219 (230)
T 1tqj_A 150 --QSFIPEVLPKIRALRQMCDERGLDPWIEVDGG-LK--PNNTWQVLEAGANAIVAGSAVFNA--PNYAEAIAGVRN 219 (230)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESS-CC--TTTTHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHT
T ss_pred --ccCcHHHHHHHHHHHHHHHhcCCCCcEEEECC-cC--HHHHHHHHHcCCCEEEECHHHHCC--CCHHHHHHHHHH
Confidence 22222233333222222221111222333333 22 233345677899999888744322 356666666654
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=93.07 E-value=2.8 Score=37.87 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
.+.+.+++.+++..+.|.+-+-+.+.. ......+.+..+++.+++. ++.+++ .....+.++.-.++ |.+-|
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s----~~~eE~~rv~~vi~~l~~~~~~pisI--DT~~~~v~~aal~a~~Ga~iI 104 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGP----TADDPVRVMEWLVKTIQEVVDLPCCL--DSTNPDAIEAGLKVHRGHAMI 104 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCS----CSSCHHHHHHHHHHHHHHHCCCCEEE--ECSCHHHHHHHHHHCCSCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCc----CchhHHHHHHHHHHHHHHhCCCeEEE--eCCCHHHHHHHHHhCCCCCEE
Confidence 567999999999999999888776643 1234678888888888754 666554 34578999888888 98877
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHH----HHHHHHHHhcCCCCCCeEeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEED----RVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed----~~~~l~~l~~l~~~~~~v~~~ 270 (386)
+ ++.+ -+++-+.+..+.++|..+..--+ -|...|.++ +.+.++.+.+.|...+.+.+-
T Consensus 105 Ndvs~~--------------~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilD 169 (271)
T 2yci_X 105 NSTSAD--------------QWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYID 169 (271)
T ss_dssp EEECSC--------------HHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred EECCCC--------------ccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEe
Confidence 6 4332 12223455667788886544333 344456444 445556666665322334443
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=5.9 Score=43.27 Aligned_cols=214 Identities=13% Similarity=0.018 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHc--CCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcE--EEEe--c--CC------CCHH
Q 016605 122 MTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--GM------LEKH 185 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~--G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~--i~~t--~--g~------l~~e 185 (386)
++.++.++.++.+.+. |+..+-..|+.....+-+...+.=.+.++.+++. +.. ..+. | |. +.++
T Consensus 552 ~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~ 631 (1150)
T 3hbl_A 552 VRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHK 631 (1150)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHH
Confidence 8899999999998887 8888876554321101000001223344444432 222 3332 1 21 1355
Q ss_pred HHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEee---c------CCCHHHHHHHHHH
Q 016605 186 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG---L------GEAEEDRVGLLHT 256 (386)
Q Consensus 186 ~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~G---l------get~ed~~~~l~~ 256 (386)
.++...++|++.+.+..-. .........++.+++.|..+...+.+- + ..+.+.+.+.++.
T Consensus 632 ~v~~a~~~Gvd~irif~~~-----------sd~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~ 700 (1150)
T 3hbl_A 632 FVQESAKAGIDVFRIFDSL-----------NWVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKE 700 (1150)
T ss_dssp HHHHHHHTTCCEEEEECTT-----------CCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEEeeC-----------CHHHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHH
Confidence 6788888999998874322 122233456777888897766666654 2 1457888999999
Q ss_pred HhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecC-cccccChhHHHhhhhcCcccc---
Q 016605 257 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI--- 332 (386)
Q Consensus 257 l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~-g~~~~~~~~~~~~l~~Gan~~--- 332 (386)
+.+.| ++.+.+ ++|- ...++.+..+++...+..+ +..+.+.+ .-.++.-.....++.+||+.+
T Consensus 701 ~~~~G--a~~i~l------~Dt~----G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~a 767 (1150)
T 3hbl_A 701 LEREG--FHILAI------KDMA----GLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTA 767 (1150)
T ss_dssp HHHTT--CSEEEE------EETT----CCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCeeeE------cCcc----CCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 99997 554433 2232 2346778888888777665 33333321 111222233467888999987
Q ss_pred ccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 333 FTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 333 ~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
+.|-. ..+..++.++++.+++..|+.+
T Consensus 768 i~GlG-~~~gn~~lE~lv~~L~~~g~~t 794 (1150)
T 3hbl_A 768 VASMS-GLTSQPSANSLYYALNGFPRHL 794 (1150)
T ss_dssp CGGGC-SBTSCCBHHHHHHHTTTSSCCB
T ss_pred ccccC-CCCCCccHHHHHHHHHhcCCCc
Confidence 22210 1245568888888888877653
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=92.67 E-value=1.7 Score=39.81 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.+++++.+++..+.|.+-+-+.+-.+-++.. ....+++...|+.+++ .++.+++. ....+.++.-.++|.+
T Consensus 60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSID--T~~~~V~~aAl~aGa~ 137 (297)
T 1tx2_A 60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISID--TYKAEVAKQAIEAGAH 137 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEE--CSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEe--CCCHHHHHHHHHcCCC
Confidence 578999999999999999888787533222211 2445667777788774 36665443 3567777777777877
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 138 iIN 140 (297)
T 1tx2_A 138 IIN 140 (297)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.55 E-value=3.1 Score=35.61 Aligned_cols=190 Identities=15% Similarity=0.076 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCC-CHHH-HHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGML-EKHQ-AIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l-~~e~-l~~Lk~aG~~~ 197 (386)
.+.++.++.++.+. .|++-+-+ | -|.....-.+.++.+++. ++++..+.-.. ..+. ++.++++|++.
T Consensus 10 ~~~~~~~~~~~~~~-~~~diie~-G-------~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~ 80 (211)
T 3f4w_A 10 LTLPEAMVFMDKVV-DDVDIIEV-G-------TPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADY 80 (211)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEE-C-------HHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHhh-cCccEEEe-C-------cHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCE
Confidence 46788888888774 46553322 2 132244445677777754 56654443221 2344 89999999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCC
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 277 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~g 277 (386)
+.+..... .+...+.++.+++.|+.+...+ .+ .++. .+.++.+.+.+ .+.+.+++- ..|
T Consensus 81 v~v~~~~~------------~~~~~~~~~~~~~~g~~~~v~~-~~-~~t~---~~~~~~~~~~g--~d~i~v~~g--~~g 139 (211)
T 3f4w_A 81 VTVLGVTD------------VLTIQSCIRAAKEAGKQVVVDM-IC-VDDL---PARVRLLEEAG--ADMLAVHTG--TDQ 139 (211)
T ss_dssp EEEETTSC------------HHHHHHHHHHHHHHTCEEEEEC-TT-CSSH---HHHHHHHHHHT--CCEEEEECC--HHH
T ss_pred EEEeCCCC------------hhHHHHHHHHHHHcCCeEEEEe-cC-CCCH---HHHHHHHHHcC--CCEEEEcCC--Ccc
Confidence 98854332 2233466677888898754321 11 2333 33445555555 566654311 112
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHH
Q 016605 278 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 278 T~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i 353 (386)
..+ .....+ .+...+...++..+-+.+| ++ ++.-...+.+||+.++.|..+... .++.+..+.+
T Consensus 140 ~~~---~~~~~~----~i~~l~~~~~~~~i~~~gG-I~--~~~~~~~~~~Gad~vvvGsai~~~--~d~~~~~~~l 203 (211)
T 3f4w_A 140 QAA---GRKPID----DLITMLKVRRKARIAVAGG-IS--SQTVKDYALLGPDVVIVGSAITHA--ADPAGEARKI 203 (211)
T ss_dssp HHT---TCCSHH----HHHHHHHHCSSCEEEEESS-CC--TTTHHHHHTTCCSEEEECHHHHTC--SSHHHHHHHH
T ss_pred ccc---CCCCHH----HHHHHHHHcCCCcEEEECC-CC--HHHHHHHHHcCCCEEEECHHHcCC--CCHHHHHHHH
Confidence 221 111222 2334445555533434443 23 333356678899999888744332 3444443333
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.48 E-value=5.9 Score=35.74 Aligned_cols=225 Identities=13% Similarity=0.070 Sum_probs=120.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhc--CcEEEEecCC---CCHHHHHHHHHhc
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM---LEKHQAIELKKAG 194 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~--g~~i~~t~g~---l~~e~l~~Lk~aG 194 (386)
..+++||.+.+.++.+.|..-+++-- +++.|.| ...+.+.+++..+++. ++-+.+|.|- ..++. ..+.+..
T Consensus 26 PvTpeEia~~A~~~~~AGAaivHlHv--Rd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R-~~~~~~~ 102 (275)
T 3no5_A 26 PITVSEQVESTQAAFEAGATLVHLHV--RNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNER-GAMLSLR 102 (275)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECE--ECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGG-GTTGGGC
T ss_pred CCCHHHHHHHHHHHHHccCcEEEEee--cCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHH-hhHhhcC
Confidence 38999999999999999998887733 3333444 4557788888888753 5556555542 12222 2222334
Q ss_pred cCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
.+..+++.-+.. ..+.+. ..+++...+.++.+.+.|+.....+ | +..++.....++++ |.-...+.+ .|+-
T Consensus 103 Pe~aSl~~gs~N-f~~~v~-~N~~~~~~~~~~~~~e~Gi~pE~e~-f----d~g~l~~~~~l~~~-Gl~~~p~~~-~~vl 173 (275)
T 3no5_A 103 PDMASLATGSVN-FPTRVY-DNPPELVDWLAAEMKTYGIKPEVEA-F----DLSMIFQAAAMQAA-GAIVGPLHI-QFVM 173 (275)
T ss_dssp CSEEEEECSCEE-CSSSEE-CCCHHHHHHHHHHHHHTTCEEEEEE-S----STHHHHHHHHHHHH-TSSCSSCEE-EEEE
T ss_pred CCEEEecCcccc-cccccc-cCCHHHHHHHHHHHHHcCCeeEEEE-E----cHHHHHHHHHHHHC-CCCCCCeeE-EEEe
Confidence 555554443321 001111 2467888888999999999876632 2 34455555455533 210112222 2322
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCccccc-cCCccccCCCC-------C
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIF-TGEKLLTTPNN-------D 345 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~~-~g~~~~t~~~~-------~ 345 (386)
|-+. . .+.+++.+..++...+.+-++....+. -|+.. -.....++..|.+.=+ .++++...++. -
T Consensus 174 --Gv~~-g-~~~~~~~l~~~~~~l~~~~~~~~w~v~g~Gr~~--~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~l 247 (275)
T 3no5_A 174 --GIKN-A-MPVDREVLEFYVQTLKRLSPDATWTGAGIGRHQ--LTMARWSLELGGHCRTGLEDNVRLDKNTLAPSNAAL 247 (275)
T ss_dssp --CCTT-S-CCCCHHHHHHHHHHHHHHCTTCEEEEEECGGGH--HHHHHHHHHHTCEEEESTTTCCBSSSSCBCSCHHHH
T ss_pred --CCCC-C-CCCCHHHHHHHHHHHHhCCCCCeEEEEecCHhh--HHHHHHHHHhCCCeEEcCCcceeCCCCCCCCCHHHH
Confidence 3221 1 235677766666555443333221221 12211 1334556667776322 12333222331 3
Q ss_pred hhHHHHHHHHcCCCcCCC
Q 016605 346 FDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 346 ~~~~~~~i~~~G~~p~~~ 363 (386)
++..+++++++|+.+...
T Consensus 248 V~~~~~i~~~~gr~vAtp 265 (275)
T 3no5_A 248 VRQVAELCEEYGRPVATA 265 (275)
T ss_dssp HHHHHHHHHHTTCCBCCH
T ss_pred HHHHHHHHHHcCCCCCCH
Confidence 566788999999988754
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.83 Score=39.90 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC------CCCHHHHHHHHHhccC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG------MLEKHQAIELKKAGLT 196 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g------~l~~e~l~~Lk~aG~~ 196 (386)
..+.+.+.++.+++.|++.|+|+.= ++ .| ....+.+.++++..+. +++..+-. .-..+.++.|.+.|++
T Consensus 74 E~~~M~~Di~~~~~~GadGvV~G~L-t~-dg-~iD~~~~~~Li~~a~~--~~vTFHRAFD~~~~~d~~~ale~L~~lGv~ 148 (224)
T 2bdq_A 74 ELRIMEEDILRAVELESDALVLGIL-TS-NN-HIDTEAIEQLLPATQG--LPLVFHMAFDVIPKSDQKKSIDQLVALGFT 148 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCB-CT-TS-SBCHHHHHHHHHHHTT--CCEEECGGGGGSCTTTHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE-CC-CC-CcCHHHHHHHHHHhCC--CeEEEECchhccCCcCHHHHHHHHHHcCCC
Confidence 3566677778889999999988542 11 12 3567788888877664 44433311 1226679999999999
Q ss_pred eeecccCchHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeec
Q 016605 197 AYNHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 275 (386)
Q Consensus 197 ~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~ 275 (386)
+|.-+=.. ++.+..+-++.++.+.+ ++- .+.+|.|-|-+.+.+.++++.. + +..+....+.-.
T Consensus 149 rILTSG~~---------~~~~a~~g~~~L~~Lv~~a~~--ri~Im~GgGV~~~Ni~~l~~~t---G--v~e~H~s~i~~~ 212 (224)
T 2bdq_A 149 RILLHGSS---------NGEPIIENIKHIKALVEYANN--RIEIMVGGGVTAENYQYICQET---G--VKQAHGTRITQM 212 (224)
T ss_dssp EEEECSCS---------SCCCGGGGHHHHHHHHHHHTT--SSEEEECSSCCTTTHHHHHHHH---T--CCEEEETTCC--
T ss_pred EEECCCCC---------CCCcHHHHHHHHHHHHHhhCC--CeEEEeCCCCCHHHHHHHHHhh---C--CCEEccccccCC
Confidence 99753111 01112233344444433 232 3567888777777777665443 3 667777777777
Q ss_pred CCCCCCC
Q 016605 276 KGTPLQD 282 (386)
Q Consensus 276 ~gT~l~~ 282 (386)
+|.|++.
T Consensus 213 ~~~~~~~ 219 (224)
T 2bdq_A 213 AGDPLEH 219 (224)
T ss_dssp -------
T ss_pred CCCcchh
Confidence 7888764
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=92.44 E-value=2.1 Score=38.52 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC-CCChhh-------------HHHHHHHHHHHhhc--CcEEEE-e--cCC--
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTN-------------FNQILEYVKDIRDM--GMEVCC-T--LGM-- 181 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-~ge~~~-------------~~~l~~~i~~ik~~--g~~i~~-t--~g~-- 181 (386)
+.++..+.++.+.+.|++-+.++.-..++ ...|.. .+..++.++++++. .+++.. . +..
T Consensus 29 ~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~ 108 (268)
T 1qop_A 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (268)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHH
Confidence 45778888888889999988775321111 111111 34567888888854 455432 1 211
Q ss_pred -CCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 182 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 182 -l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
-.++.++.++++|++.+.+.-.. .++..+.++.+++.|+... .++....+.+.+........
T Consensus 109 ~g~~~~~~~~~~aGadgii~~d~~-------------~e~~~~~~~~~~~~g~~~i--~l~~p~t~~~~i~~i~~~~~-- 171 (268)
T 1qop_A 109 NGIDAFYARCEQVGVDSVLVADVP-------------VEESAPFRQAALRHNIAPI--FICPPNADDDLLRQVASYGR-- 171 (268)
T ss_dssp TCHHHHHHHHHHHTCCEEEETTCC-------------GGGCHHHHHHHHHTTCEEE--CEECTTCCHHHHHHHHHHCC--
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCC-------------HHHHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHHHhhCC--
Confidence 12688999999999987763211 2334466678889998652 23323444454444443322
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCccccccCCcc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 338 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~~~g~~~ 338 (386)
..+.+....-..|.. .. ......+.++..|... +..+-+. .++. ++....++.+||+.++.|..+
T Consensus 172 ----g~v~~~s~~G~tG~~----~~-~~~~~~~~i~~lr~~~-~~pi~vg---gGI~t~e~~~~~~~agAD~vVVGSai 237 (268)
T 1qop_A 172 ----GYTYLLSRSGVTGAE----NR-GALPLHHLIEKLKEYH-AAPALQG---FGISSPEQVSAAVRAGAAGAISGSAI 237 (268)
T ss_dssp ----SCEEEESSSSCCCSS----SC-C--CCHHHHHHHHHTT-CCCEEEE---SSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred ----CcEEEEecCCcCCCc----cC-CCchHHHHHHHHHhcc-CCcEEEE---CCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 122222211111221 01 1112223344444443 2222222 2333 443344588999999988743
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=92.16 E-value=1.5 Score=38.70 Aligned_cols=198 Identities=11% Similarity=0.062 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+.+..-.....+.. .. +.++.+++ .++++.+..+..+++.++.+.++|++.|.++.+.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~----~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGD----NR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCC----CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCC----hH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchH
Confidence 445556777788999988753111001111 12 56666663 5788888888889999999999999999987655
Q ss_pred hHHHHhhhCCCCCHHHHHHHHHHHH-HcCCeeeEe--EEeecCCC--HHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 205 SREFYSKIITTRSYDERLETLKHVR-EAGINVCSG--GIIGLGEA--EEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 205 ~~~~~~~i~~~~s~~~~l~~i~~a~-~~Gi~v~~~--~i~Glget--~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
.+ +++...+.++.+. +..+.+.+. .+.-.|.. ..+..+.++.+.++| ++.+.++...+. ++.
T Consensus 108 l~----------~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~~-~~~ 174 (244)
T 1vzw_A 108 LE----------TPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEG--CARYVVTDIAKD-GTL 174 (244)
T ss_dssp HH----------CHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTT--CCCEEEEEC-------
T ss_pred hh----------CHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCC--CCEEEEeccCcc-ccc
Confidence 41 1222333333322 111122221 12212221 013455556666675 666766654432 211
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhc---CccccccCCccccCCCCChhHHHHHH
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA---GANSIFTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~---Gan~~~~g~~~~t~~~~~~~~~~~~i 353 (386)
..++.+.+.++. ... +..+ +..|-++- ++.....+.+ ||+.++.|..+.. ...++.+.+..+
T Consensus 175 ----~g~~~~~~~~i~----~~~-~ipv-ia~GGI~~-~~d~~~~~~~~~~Gadgv~vG~al~~-~~~~~~~~~~~~ 239 (244)
T 1vzw_A 175 ----QGPNLELLKNVC----AAT-DRPV-VASGGVSS-LDDLRAIAGLVPAGVEGAIVGKALYA-KAFTLEEALEAT 239 (244)
T ss_dssp -----CCCHHHHHHHH----HTC-SSCE-EEESCCCS-HHHHHHHHTTGGGTEEEEEECHHHHT-TSSCHHHHHHHH
T ss_pred ----CCCCHHHHHHHH----Hhc-CCCE-EEECCCCC-HHHHHHHHhhccCCCceeeeeHHHHc-CCCCHHHHHHHh
Confidence 123333332222 222 2112 22222221 2333556667 9999988874442 233566655544
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=4 Score=35.73 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCc
Q 016605 126 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 204 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~ 204 (386)
+..+.++.+.+.|++.+.+..-.....+.+ .. +.++.+++ .++++.+..|..+++.++.+.++|++.+.++.+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~----~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~ 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGS----NH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAA 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCC----CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCC----hH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchH
Confidence 445556677778999988753211111211 12 66666663 5788888888889999999999999999987655
Q ss_pred h
Q 016605 205 S 205 (386)
Q Consensus 205 ~ 205 (386)
.
T Consensus 107 l 107 (244)
T 2y88_A 107 L 107 (244)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=3.9 Score=37.70 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=60.9
Q ss_pred CeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHH
Q 016605 84 REVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFN 159 (386)
Q Consensus 84 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~ 159 (386)
.+..+.+++|+ |+- +|+. + .+..+++.+++.+++..+.|.+-+-+++-.+-++.+ ....+
T Consensus 8 ~~~~iMGIlNv-TPD--------SFsd----g---g~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~ 71 (314)
T 2vef_A 8 AKTVICGIINV-TPD--------SFSD----G---GQFFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQ 71 (314)
T ss_dssp CCCEEEEEEEC-CC------------------------CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHH
T ss_pred CCceEEEEEeC-CCC--------CCCC----C---CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHH
Confidence 44567788888 543 3432 1 223689999999999999999877776632222211 14567
Q ss_pred HHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 160 QILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 160 ~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
++...|+.+++. ++.+++ .....+.++.-.++|.+.|+
T Consensus 72 Rv~pvI~~l~~~~~vpiSI--DT~~~~Va~aAl~aGa~iIN 110 (314)
T 2vef_A 72 RVVPVIKAIRKESDVLISI--DTWKSQVAEAALAAGADLVN 110 (314)
T ss_dssp HHHHHHHHHHHHCCCEEEE--ECSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhhCCceEEE--eCCCHHHHHHHHHcCCCEEE
Confidence 788888888753 555543 44567777777777877776
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.46 Score=42.15 Aligned_cols=189 Identities=9% Similarity=0.077 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCcEEEEe-cccCCCCCChhhHHHHHHHHHHHhhc---CcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 126 AVMQAAQKAKEAGSTRFCMG-AAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 126 eI~~~~~~~~~~G~~~v~l~-~g~~~~~ge~~~~~~l~~~i~~ik~~---g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.+.+.++.+.+.|++-+++- ..++.. | ++..=.+.++.+++. .+.+.+++ .+..++.+.++|.|.+.+.
T Consensus 27 ~l~~~i~~~~~~gad~lhvDvmDG~fv---p-n~t~G~~~v~~lr~~~~~DvhLMv~~---p~~~i~~~~~aGAd~itvH 99 (237)
T 3cu2_A 27 QLNEEVTTLLENQINVLHFDIADGQFS---S-LFTVGAIGIKYFPTHCFKDVHLMVRN---QLEVAKAVVANGANLVTLQ 99 (237)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEBSSSS---S-CBCBCTHHHHTSCTTSEEEEEEECSC---HHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHHcCCCEEEEEEecCccc---c-chhhhHHHHHHHhhhCCCCeEEEEEC---HHHHHHHHHHcCCCEEEEe
Confidence 44555666667888766542 111110 1 111112455555542 22233232 2678999999999999887
Q ss_pred cCchHHHHhhhCCCCCHHHHHHHHHHHHHc---------CCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 202 LDTSREFYSKIITTRSYDERLETLKHVREA---------GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 202 le~~~~~~~~i~~~~s~~~~l~~i~~a~~~---------Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
.++. ... .+.++.+++. |..+...+ .. .|..+. ++.+.+ .++.+.+...
T Consensus 100 ~ea~----------~~~---~~~i~~i~~~~~~~~~~~~g~~~gv~l--~p-~Tp~~~---l~~~l~---~~D~vlvMsv 157 (237)
T 3cu2_A 100 LEQY----------HDF---ALTIEWLAKQKTTYANQVYPVLIGACL--CP-ETPISE---LEPYLD---QIDVIQLLTL 157 (237)
T ss_dssp TTCT----------TSH---HHHHHHHTTCEEEETTEEEECEEEEEE--CT-TSCGGG---GTTTTT---TCSEEEEESE
T ss_pred cCCc----------ccH---HHHHHHHHhcccccccccCCceEEEEE--eC-CChHHH---HHHHhh---cCceeeeeee
Confidence 7663 112 3566777877 66554433 22 233221 111112 2677777776
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC----cceeecCcccccChhHHHhhhh--cCccccccCCccccCCCCCh
Q 016605 273 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFL--AGANSIFTGEKLLTTPNNDF 346 (386)
Q Consensus 273 ~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~----~~i~i~~g~~~~~~~~~~~~l~--~Gan~~~~g~~~~t~~~~~~ 346 (386)
.|.-|+. .. ....++.+...|.+.++ ..+.+.+ ++..+....... +|||.++.|..+. .. ++
T Consensus 158 ~pgfggq----~f--~~~~l~ki~~lr~~~~~~~~~~~I~vdG---GI~~~~~~~~~~~~aGad~~VvGSaIf-~~--d~ 225 (237)
T 3cu2_A 158 DPRNGTK----YP--SELILDRVIQVEKRLGNRRVEKLINIDG---SMTLELAKYFKQGTHQIDWLVSGSALF-SG--EL 225 (237)
T ss_dssp ETTTTEE----CC--HHHHHHHHHHHHHHHGGGGGGCEEEEES---SCCHHHHHHHHHSSSCCCCEEECGGGG-SS--CH
T ss_pred ccCcCCe----ec--ChhHHHHHHHHHHHHHhcCCCceEEEEC---CcCHHHHHHHHHhCCCCcEEEEeeHHh-CC--CH
Confidence 6633322 11 33445555555555542 2233443 344455566788 9999999997433 32 56
Q ss_pred hHHHHHHHH
Q 016605 347 DADQLMFKV 355 (386)
Q Consensus 347 ~~~~~~i~~ 355 (386)
.+..+.+++
T Consensus 226 ~~~~~~l~~ 234 (237)
T 3cu2_A 226 KTNLKVWKS 234 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.83 Score=40.14 Aligned_cols=117 Identities=11% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG 194 (386)
+|+++.+...+ ...++++ ||+.. ....+.+.+.++.+++.|+.++.-.. -+.+.++.-++.|
T Consensus 77 ~emi~ia~~~k---P~~vtLVPE~r~e~TTegGldv----~~~~~~l~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~G 148 (243)
T 1m5w_A 77 EEMLAIAVETK---PHFCCLVPEKRQEVTTEGGLDV----AGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVG 148 (243)
T ss_dssp HHHHHHHHHHC---CSEEEECCCCSSCSSCCSCCCS----GGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCEEEECCCCCCCcCCCcchhH----HhhHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhC
Confidence 46676655543 4677776 22211 23678999999999999999755443 4689999999999
Q ss_pred cCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
.++|-+.-..+.+.+........++...++.+.+++.|+.|+. |+|-|.+.+..+
T Consensus 149 A~~IELhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgL~y~Nv~~i 203 (243)
T 1m5w_A 149 APFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNA----GHGLTYHNVKAI 203 (243)
T ss_dssp CSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE----ESSCCTTTHHHH
T ss_pred cCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHHHHHH
Confidence 9999875544411111000112467777888889999999887 677776665544
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=91.37 E-value=8.6 Score=35.31 Aligned_cols=227 Identities=18% Similarity=0.164 Sum_probs=125.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC-CCCCh-hhHHHHHHHHHHHhhc-CcEEEEecC-C---CCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-TIGRK-TNFNQILEYVKDIRDM-GMEVCCTLG-M---LEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~-~~ge~-~~~~~l~~~i~~ik~~-g~~i~~t~g-~---l~~e~l~~Lk~a 193 (386)
..+++||.+.+.++.+.|..-+++-. ++ ..|.| ...+.+.+++..|++. .+-+..|.| . -.++.+..+.+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~ 105 (311)
T 3e49_A 28 PVTPDEVAQASIGAAEAGAAVIHLHA--RDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGSPHMTVEERLRPATHY 105 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHTTHHHHHHHHCCCEEEECSCSCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhc
Confidence 38999999999999999998888733 22 12433 4556777777777743 444444433 2 235566666665
Q ss_pred ccCeeecccCch------------------HH-HH----hhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHH
Q 016605 194 GLTAYNHNLDTS------------------RE-FY----SKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDR 250 (386)
Q Consensus 194 G~~~v~i~le~~------------------~~-~~----~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~ 250 (386)
..+..+++.-+. +. .+ +.+- ..+++...+.++.+.+.|+.....+ | +..++
T Consensus 106 ~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~n~~~~i~~~~~~~~e~Gi~pE~e~-f----d~g~l 179 (311)
T 3e49_A 106 MPELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVF-KNTFADIEFILKTCGGNGTRFEFEC-Y----DTSHL 179 (311)
T ss_dssp CCSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEE-CCCHHHHHHHHHHHHTTTCEEEEEE-C----SHHHH
T ss_pred CCCeeeecCCCcccccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCeeEEEE-E----CHHHH
Confidence 566555443321 10 11 1111 2367788888999999999876633 2 45566
Q ss_pred HHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcce-ee-cCcccccChhHHHhhhhcC
Q 016605 251 VGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV-RL-SAGRVRFSMPEQALCFLAG 328 (386)
Q Consensus 251 ~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i-~i-~~g~~~~~~~~~~~~l~~G 328 (386)
.....++++ |.-...+.+ .|+- |-+. . .+.+++.+..++..+..++|.... .+ ..|+.. -.....++..|
T Consensus 180 ~~~~~l~~~-Gl~~~p~~~-~~vl--Gv~~-g-~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~--~p~~~~A~~~G 251 (311)
T 3e49_A 180 YNLAHFVDR-KLATPPFFV-QTVF--GLLG-G-IGPHPEDLAHMRRTADRLFGADYVWSILGAGRHQ--IPLASIGAAQG 251 (311)
T ss_dssp HHHHHHHHT-TCSCSSEEE-EEEE--SCTT-S-CCCCHHHHHHHHHHHHHHHGGGEEEEEEECGGGH--HHHHHHHHTTT
T ss_pred HHHHHHHHc-CCCCCCeEE-EEEe--cCCC-C-CCCCHHHHHHHHHHHHhhCCCCCeEEEEeeChhh--HHHHHHHHHcC
Confidence 665555544 311112222 3332 3221 2 245777777776665444553221 11 122222 23345666777
Q ss_pred ccccc-cCCccccCCC-------CChhHHHHHHHHcCCCcCCC
Q 016605 329 ANSIF-TGEKLLTTPN-------NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 329 an~~~-~g~~~~t~~~-------~~~~~~~~~i~~~G~~p~~~ 363 (386)
.|.=+ .++++...++ .-++..+++++++|+.+...
T Consensus 252 GhvRVGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vATp 294 (311)
T 3e49_A 252 ANVRVGLEDSLWIAPGELAETNAAQVRKIRQVIEGLSLEVASP 294 (311)
T ss_dssp CEEEECTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCCH
T ss_pred CCeEEcCCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCH
Confidence 76322 1232222222 24566788999999988654
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=2.5 Score=40.87 Aligned_cols=97 Identities=9% Similarity=0.126 Sum_probs=62.1
Q ss_pred CCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC----ChhhH
Q 016605 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNF 158 (386)
Q Consensus 83 g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g----e~~~~ 158 (386)
+.+..+.+++|+ |+- +|+. .+ .+.+++++.+++..+.|++-+-++|-.+-++. +....
T Consensus 188 ~~~~~vMGIlNv-TPD--------SFsD---gg------~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~ 249 (442)
T 3mcm_A 188 LANTIRMGIVNL-SNQ--------SFSD---GN------FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEF 249 (442)
T ss_dssp CCSSEEEEEEEC-SSC--------C-CC---CS------SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHH
T ss_pred CCCceEEEEEeC-CCC--------CCCC---CC------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
Confidence 345666777887 543 3431 11 46788999999999999987777653332221 12345
Q ss_pred HHHHHHHHHHhh------cCcEEEEecCCCCHHHHHHHHH--hccCe-ee
Q 016605 159 NQILEYVKDIRD------MGMEVCCTLGMLEKHQAIELKK--AGLTA-YN 199 (386)
Q Consensus 159 ~~l~~~i~~ik~------~g~~i~~t~g~l~~e~l~~Lk~--aG~~~-v~ 199 (386)
+++...|+.+++ .++.++ ..+...+.++.-.+ +|.+. |+
T Consensus 250 ~Rv~pvI~~l~~~~~~~~~~vpIS--IDT~~~~VaeaAL~~~aGa~i~IN 297 (442)
T 3mcm_A 250 NKLNEFLEYFKSQLANLIYKPLVS--IDTRKLEVMQKILAKHHDIIWMIN 297 (442)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCEEE--EECCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHHHHHHHhhccccCCCCeEE--EeCCCHHHHHHHHhhCCCCCEEEE
Confidence 677777888875 144444 44567888888887 89887 65
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=90.48 E-value=12 Score=35.41 Aligned_cols=203 Identities=16% Similarity=0.099 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC--------------CC---------hhhHHHHHHHHHHHhhcCcEEEEec
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI--------------GR---------KTNFNQILEYVKDIRDMGMEVCCTL 179 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~--------------ge---------~~~~~~l~~~i~~ik~~g~~i~~t~ 179 (386)
+.|...+.++.+++.|++-+-++.-...+. +. .+..+++..+.+..++.|+.+.+++
T Consensus 42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~stp 121 (385)
T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTV 121 (385)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBC
T ss_pred cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEcc
Confidence 788999999999999999887764321110 00 0223555666666667888876654
Q ss_pred CCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 180 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 180 g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
.+.+.++.|.+.|++.+.|+---. .+ +.-++.+.+.|.+|-. =-|+. |.+|+...++.+..
T Consensus 122 --fD~~svd~l~~~~vd~~KIgS~~~----------~N----~pLL~~va~~gKPViL--StGma-Tl~Ei~~Ave~i~~ 182 (385)
T 1vli_A 122 --CDEGSADLLQSTSPSAFKIASYEI----------NH----LPLLKYVARLNRPMIF--STAGA-EISDVHEAWRTIRA 182 (385)
T ss_dssp --CSHHHHHHHHTTCCSCEEECGGGT----------TC----HHHHHHHHTTCSCEEE--ECTTC-CHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHhcCCCEEEECcccc----------cC----HHHHHHHHhcCCeEEE--ECCCC-CHHHHHHHHHHHHH
Confidence 678999999998998888742111 11 2345555666766211 12333 89999999999998
Q ss_pred CCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccC-hhHHHhhhhcCcccc---ccC
Q 016605 260 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSI---FTG 335 (386)
Q Consensus 260 l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~-~~~~~~~l~~Gan~~---~~g 335 (386)
.| +.+.+-++...-+|. +. .+--++.+...+..+|...+-.+ +. +.+ ......++..||+-+ ++-
T Consensus 183 ~G-n~~iiLlhc~s~YPt-p~-------~~~nL~aI~~Lk~~f~~lpVG~S-dH-t~G~~~~~~AAvAlGA~iIEkHftl 251 (385)
T 1vli_A 183 EG-NNQIAIMHCVAKYPA-PP-------EYSNLSVIPMLAAAFPEAVIGFS-DH-SEHPTEAPCAAVRLGAKLIEKHFTI 251 (385)
T ss_dssp TT-CCCEEEEEECSSSSC-CG-------GGCCTTHHHHHHHHSTTSEEEEE-EC-CSSSSHHHHHHHHTTCSEEEEEBCS
T ss_pred CC-CCcEEEEeccCCCCC-Ch-------hhcCHHHHHHHHHHcCCCCEEeC-CC-CCCchHHHHHHHHcCCCEEEeCCCc
Confidence 86 223333332222221 11 11113445566666643223222 11 223 556677888899954 222
Q ss_pred Cc-c---ccCCCCChhHHHHHHHH
Q 016605 336 EK-L---LTTPNNDFDADQLMFKV 355 (386)
Q Consensus 336 ~~-~---~t~~~~~~~~~~~~i~~ 355 (386)
++ . ......++++..+|+++
T Consensus 252 dra~~G~D~~~SL~P~ef~~lv~~ 275 (385)
T 1vli_A 252 DKNLPGADHSFALNPDELKEMVDG 275 (385)
T ss_dssp CTTSSCSSCTTSBCHHHHHHHHHH
T ss_pred cccCCCCchhhhCCHHHHHHHHHH
Confidence 21 1 12234566666666543
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=90.39 E-value=10 Score=34.36 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhc--CcEEEEecCCC---C-HHHHHHHHHhc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGML---E-KHQAIELKKAG 194 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~--g~~i~~t~g~l---~-~e~l~~Lk~aG 194 (386)
.+++||.+.+.++.+.|..-+++=. ++..|.| ...+.+.+++..+++. ++-+.+|.|.. + ++.+.-+ +..
T Consensus 31 vTpeEia~~A~~a~~AGAaivHlHv--Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~ 107 (282)
T 2y7e_A 31 ITPEEQAKEAKACFEAGARVIHLHI--REDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALK 107 (282)
T ss_dssp CSHHHHHHHHHHHHHHTEEEEEECE--ECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcC
Confidence 8999999999999999998887733 2222333 4567778888888754 55565555432 2 3344444 455
Q ss_pred cCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCC-CeEeeeeee
Q 016605 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP-ESVPINALL 273 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~-~~v~~~~f~ 273 (386)
.+..++++-+.. .-+.+ -..+++...+.++.+++.|+.....+ | +..++.....++++ |. . +.-.+..|+
T Consensus 108 Pe~asl~~gs~N-f~~~v-~~n~~~~~~~~~~~~~e~Gv~pE~e~-f----d~g~l~~~~~l~~~-Gl-~p~~p~~~~~V 178 (282)
T 2y7e_A 108 PEMATLNAGTLN-FGDDI-FINHPADIIRLAEAFKQYNVVPEVEV-Y----ESGMVDAVARLIKK-GI-ITQNPLHIQFV 178 (282)
T ss_dssp CSEEEEECCCEE-ETTEE-ECCCHHHHHHHHHHHHHTTCEEEEEE-C----SHHHHHHHHHHHHT-TS-CCCSSCEEEEE
T ss_pred CCEEEecccccc-ccccc-ccCCHHHHHHHHHHHHHcCCeEEEEE-E----CHHHHHHHHHHHHc-CC-CCCCCeEEEEE
Confidence 666665554431 00011 13578888889999999999876633 2 35566655555543 31 2 111122222
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCccccc-cCCccccCCC-------C
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIF-TGEKLLTTPN-------N 344 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~~-~g~~~~t~~~-------~ 344 (386)
- |-+. . -+.+++.+..++.....-.|+....+. -|+..+ .....++..|.+.=+ .++++...++ .
T Consensus 179 l--Gv~~-g-~~~~~~~L~~~~~~lp~~~~~~~wsv~g~Gr~q~--p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~ 252 (282)
T 2y7e_A 179 L--GVPG-G-MSGKPKNLMYMMEHLKEEIPTATWAVAGIGRWHI--PTSLIAMVTGGHIRCGFEDNIFYHKGVIAESNAQ 252 (282)
T ss_dssp E--CCTT-S-CCCCHHHHHHHHHHHHHHSTTCEEEEEECGGGHH--HHHHHHHTTTCEEEESTTTCCEEETTEECSCHHH
T ss_pred E--ecCC-C-CCCCHHHHHHHHHhcccccCCCeEEEEecCcchH--HHHHHHHHcCCCeEEccccccCCCCCCCCCCHHH
Confidence 1 2211 1 235777777666542211113221111 121111 234556667776322 1222222222 2
Q ss_pred ChhHHHHHHHHcCCCcCCC
Q 016605 345 DFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 345 ~~~~~~~~i~~~G~~p~~~ 363 (386)
-++...++++++|+.+...
T Consensus 253 lV~~~~~i~~~lgr~vAtp 271 (282)
T 2y7e_A 253 LVARLARIAKEIGRPLATP 271 (282)
T ss_dssp HHHHHHHHHHHHTCCBCCH
T ss_pred HHHHHHHHHHHcCCCCCCH
Confidence 4566788899999988653
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.35 E-value=7.4 Score=38.64 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHcC-----CcEEEEecccCCCC----CChhhHHHHHHHHHHHhhc----CcEEEEecCCCCHHHHHH
Q 016605 123 TKDAVMQAAQKAKEAG-----STRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIE 189 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G-----~~~v~l~~g~~~~~----ge~~~~~~l~~~i~~ik~~----g~~i~~t~g~l~~e~l~~ 189 (386)
+.+++++.++++.+.| +.-+-++|-.+-++ .+...++++..+|+.+++. ...+.++..+...+.++.
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a~Vaea 326 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKE 326 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcHHHHHH
Confidence 8999999999999999 87776765332222 2234567778888888651 012333444566777777
Q ss_pred HHHhccCeee
Q 016605 190 LKKAGLTAYN 199 (386)
Q Consensus 190 Lk~aG~~~v~ 199 (386)
-.++|.+-|+
T Consensus 327 Al~aGadIIN 336 (545)
T 2bmb_A 327 AIKVGVDIIN 336 (545)
T ss_dssp HHHTTCCEEE
T ss_pred HHHcCCCEEE
Confidence 7777777776
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.32 E-value=5.4 Score=35.38 Aligned_cols=204 Identities=14% Similarity=0.061 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
.+.++.+.+.|++.+.+..-.....+.. ..++.++.+++ .++++.+..|..+.+.++.+.++|++.+.++-...+
T Consensus 33 ~~~a~~~~~~Ga~~i~v~d~~~~~~~~g----~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~ 108 (266)
T 2w6r_A 33 RDWVVEVEKRGAGEILLTSIDRDGTKSG----YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHF 108 (266)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTSSCSSC----CCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC--
T ss_pred HHHHHHHHHCCCCEEEEEecCcccCCCc----ccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHh
Confidence 4455566678999888854221111111 13456666664 478888887877888899999999999988643321
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcC--C---eeeEeE--------EeecCCCH---HHHHHHHHHHhcCCCCCCeEeee
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAG--I---NVCSGG--------IIGLGEAE---EDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~G--i---~v~~~~--------i~Glget~---ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
. ..+++...+. +...| . -+.+.+ +.-.|... .+..+.++.+.+++ +..+.++
T Consensus 109 ~-------~~~~~~~~~~---~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~t 176 (266)
T 2w6r_A 109 R-------EIDMRELKEY---LKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRG--AGEILLT 176 (266)
T ss_dssp -----------CHHHHHH---CC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEE
T ss_pred C-------CCCHHHHHHH---HHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcC--CCEEEEE
Confidence 0 0012222222 22333 1 122222 22123210 12344445556675 5555543
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHH
Q 016605 271 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQ 350 (386)
Q Consensus 271 ~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~ 350 (386)
.... .|+. ..++.+. +...+... +..+-..+| ++- ++.....+.+||+.++.|..+. ....+.++..
T Consensus 177 ~~~~-~g~~----~g~~~~~----i~~l~~~~-~ipvia~GG-I~~-~ed~~~~~~~Gadgv~vgsal~-~~~~~~~~~~ 243 (266)
T 2w6r_A 177 SIDR-DGTK----SGYDTEM----IRFVRPLT-TLPIIASGG-AGK-MEHFLEAFLAGADAALAASVFH-FREIDMRELK 243 (266)
T ss_dssp ETTT-TTTC----SCCCHHH----HHHHGGGC-CSCEEEESC-CCS-HHHHHHHHHHTCSEEEESTTTC-----------
T ss_pred eecC-CCCc----CCCCHHH----HHHHHHHc-CCCEEEeCC-CCC-HHHHHHHHHcCCHHHHccHHHH-cCCCCHHHHH
Confidence 2211 1222 1233222 22222222 211112222 221 2222345568999999887443 3334678888
Q ss_pred HHHHHcCCCc
Q 016605 351 LMFKVLGLTP 360 (386)
Q Consensus 351 ~~i~~~G~~p 360 (386)
+.+++.|+..
T Consensus 244 ~~l~~~g~~~ 253 (266)
T 2w6r_A 244 EYLKKHGVNV 253 (266)
T ss_dssp ----------
T ss_pred HHHHHCCCcc
Confidence 8899999844
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.30 E-value=2.1 Score=39.60 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC---CChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI---GRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~---ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.+.+++++.+++..+.|.+-+-++|..+-++ .+....+++...|+.+++. ++.+++ .....+.++.-.++|.+
T Consensus 62 ~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI--DT~~~~VaeaAl~aGa~ 139 (318)
T 2vp8_A 62 FSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV--DTWRAQVAKAACAAGAD 139 (318)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE--ECSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE--eCCCHHHHHHHHHhCCC
Confidence 6789999999999999998777765322222 1234456677778888743 555543 34567777777777777
Q ss_pred eee
Q 016605 197 AYN 199 (386)
Q Consensus 197 ~v~ 199 (386)
.|+
T Consensus 140 iIN 142 (318)
T 2vp8_A 140 LIN 142 (318)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=90.21 E-value=9 Score=33.91 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe---------cCCCCHHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGMLEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t---------~g~l~~e~l~~Lk~ 192 (386)
+++..+.+.++.+.+. ++.+-+.+|.... ...+.+.+.|+..++.|+.++.- .| .-++.++..++
T Consensus 23 lg~~~~~d~Le~~g~y-ID~lKfg~Gt~~l----~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg-~~~~yl~~~k~ 96 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGDY-IDFVKFGWGTSAV----IDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG-KFDEFLNECEK 96 (251)
T ss_dssp CCHHHHHHHHHHHGGG-CSEEEECTTGGGG----SCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhh-cceEEecCceeee----cCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcC-cHHHHHHHHHH
Confidence 7888877777665544 6777776653221 12355888888888888886532 23 45889999999
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-------CCCHHHHHHHHHHHhcCCCCCC
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-------GEAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-------get~ed~~~~l~~l~~l~~~~~ 265 (386)
.|++.|-+|--+. .-+.+++.+.|+.+++.|+.+-+.+ |. -.+.+++++.++.-.+.| .+
T Consensus 97 lGf~~iEiS~G~i---------~l~~~~~~~~I~~~~~~G~~v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeAG--A~ 163 (251)
T 1qwg_A 97 LGFEAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAG--AD 163 (251)
T ss_dssp HTCCEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHT--CS
T ss_pred cCCCEEEECCCcc---------cCCHHHHHHHHHHHHHCCCEEeeec--cccCCcccCCCCHHHHHHHHHHHHHCC--Cc
Confidence 9999999875442 3468889999999999999864433 32 236688888887777776 55
Q ss_pred eEeee
Q 016605 266 SVPIN 270 (386)
Q Consensus 266 ~v~~~ 270 (386)
.|.+-
T Consensus 164 ~ViiE 168 (251)
T 1qwg_A 164 YVIIE 168 (251)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55443
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=90.09 E-value=11 Score=34.52 Aligned_cols=228 Identities=14% Similarity=0.173 Sum_probs=125.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCC-CCCCh-hhHHHHHHHHHHHhhc-CcEEEEecC-C---CCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-TIGRK-TNFNQILEYVKDIRDM-GMEVCCTLG-M---LEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~-~~ge~-~~~~~l~~~i~~ik~~-g~~i~~t~g-~---l~~e~l~~Lk~a 193 (386)
..+++||.+.+.++.+.|..-+++-. ++ ..|.| ...+.+.+++..|++. .+-+..|.| . -.++.+..+.+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~ 105 (311)
T 3e02_A 28 PITPEEIVKEGVAAAEAGAAMLHLHA--RDPLNGRPSQDPDLFMRFLPQLKERTDAILNITTGGGLGMSLDERLAPARAA 105 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHTTTHHHHHHHCCCEEEECSSCSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhc
Confidence 38999999999999999998888733 22 22433 4556777777777743 444444433 2 235566666665
Q ss_pred ccCeeecccCch------------------H-HHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHH
Q 016605 194 GLTAYNHNLDTS------------------R-EFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 251 (386)
Q Consensus 194 G~~~v~i~le~~------------------~-~~~~~i~~---~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~ 251 (386)
..+..+++.-+. + ..+..-.. ..+++...+.++.+.+.|+.....+ | +..++.
T Consensus 106 ~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~~~i~~~~~~~~e~Gi~pE~e~-f----d~g~l~ 180 (311)
T 3e02_A 106 RPEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGMTELGASGTRFEFEC-Y----DVGHLY 180 (311)
T ss_dssp CCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHHHHHTTTCEEEEEE-C----SHHHHH
T ss_pred CCCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeEEEEE-E----cHHHHH
Confidence 566555443222 1 11111011 3467788888999999999876633 2 455666
Q ss_pred HHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcce-ee-cCcccccChhHHHhhhhcCc
Q 016605 252 GLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV-RL-SAGRVRFSMPEQALCFLAGA 329 (386)
Q Consensus 252 ~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i-~i-~~g~~~~~~~~~~~~l~~Ga 329 (386)
....++++ |.-...+.+ .|+- |-+. . .+.+++.+..++..+..++|.... .+ ..|+.. -.....++..|.
T Consensus 181 ~~~~l~~~-Gl~~~p~~~-~~vl--Gv~~-g-~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~--~p~~~~A~~~GG 252 (311)
T 3e02_A 181 NLAHFVDR-KLVEPPFFL-QCVF--GILG-G-IGADPENLLHMRTIADRLFGQDYYLSVLAAGRHQ--MPFVTMSAILGG 252 (311)
T ss_dssp HHHHHHHT-TSSCSCEEE-EEEE--CCBT-S-CCSCHHHHHHHHHHHHHHHTTSEEEEEEECGGGH--HHHHHHHHHTTC
T ss_pred HHHHHHHc-CCCCCCeEE-EEEe--cCCC-C-CCCCHHHHHHHHHHHHhhCCCCCceEEEeeChhh--HHHHHHHHHcCC
Confidence 65555544 311112222 2332 3221 2 245777777777666455554221 11 122222 233456667777
Q ss_pred cccc-cCCccccCCC-------CChhHHHHHHHHcCCCcCCC
Q 016605 330 NSIF-TGEKLLTTPN-------NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 330 n~~~-~g~~~~t~~~-------~~~~~~~~~i~~~G~~p~~~ 363 (386)
|.=+ .++++...++ .-++..+++++++|+.+...
T Consensus 253 hvRVGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vATp 294 (311)
T 3e02_A 253 NVRVGLEDSLYSGKGQLATSNAEQVRKIRRIIEELSLDIATP 294 (311)
T ss_dssp EEEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCCH
T ss_pred CeEEccCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCH
Confidence 6322 1232222222 24566788999999988764
|
| >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.93 E-value=12 Score=34.47 Aligned_cols=222 Identities=17% Similarity=0.168 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCh-hhHHHHHHHHHHHhhc--CcEEEEecC------C----------
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRDM--GMEVCCTLG------M---------- 181 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-~ge~-~~~~~l~~~i~~ik~~--g~~i~~t~g------~---------- 181 (386)
.+++||.+.+.++.+.|..-+++=. +++ .|.| ...+.+.+++..|++. ++-+.+|.| -
T Consensus 45 vTpeEIa~~A~~a~~AGAaivHlHv--Rd~~~G~ps~d~~~y~e~~~~IR~~~~d~ii~~TTg~gg~~~g~~~~p~~~~~ 122 (316)
T 3c6c_A 45 ITPAQIADACVEAAKAGASVAHIHV--RDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTCGLGAFLLPDPEDESKALP 122 (316)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEECCCSEEECEETTEEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCccccccCcccCcccccc
Confidence 8999999999999999998888733 222 2334 4567788888888864 455555554 1
Q ss_pred -----CCHHHHHHHHHhccCeeecccCchH---HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 182 -----LEKHQAIELKKAGLTAYNHNLDTSR---EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 182 -----l~~e~l~~Lk~aG~~~v~i~le~~~---~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
-.++.+.-+.+...+..++++-+.. ..-+.+. ..+++...+.++.+++.|+.....+ | +..++...
T Consensus 123 ~~~l~~~eeR~~~~~~~~Pe~aSl~~Gs~Nf~~~~~~~v~-~n~~~~i~~~~~~~~e~Gv~pE~e~-f----d~g~l~~~ 196 (316)
T 3c6c_A 123 ESDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFVY-LNTTRTLRAMARRFQELGIKPELEV-F----SPGDILFG 196 (316)
T ss_dssp TCEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEEE-CCCHHHHHHHHHHHHHHTCEEEEEE-S----SHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCCCeEEeccccccccCCCCceee-cCCHHHHHHHHHHHHHcCCeEEEEE-E----CHHHHHHH
Confidence 1344555555556677665544431 0001111 3578888888999999999876632 2 35555554
Q ss_pred HHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcce-eec-CcccccChhHHHhhhhcCccc
Q 016605 254 LHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV-RLS-AGRVRFSMPEQALCFLAGANS 331 (386)
Q Consensus 254 l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i-~i~-~g~~~~~~~~~~~~l~~Gan~ 331 (386)
..++++ |. ++.-.+..|+- |-+. . -+.+++.+..++. .+|.... .+. -|+..+ .....++..|.+.
T Consensus 197 ~~l~~~-Gl-l~~p~~~~~vl--Gv~~-g-~p~~p~~L~~~~~----~lp~~~~wsv~g~Gr~q~--p~~~~A~~~GGhv 264 (316)
T 3c6c_A 197 KQLIEE-GL-IDGVPLFQMVL--GVLW-G-APASTETMIYQRN----LIPANAQWAAFGIGRDQM--PMMAQAALLGGNV 264 (316)
T ss_dssp HHHHHT-TC-SCSSCEEEEEC--SCTT-S-CCSCHHHHHHHHT----TSCTTSEEEEECCGGGHH--HHHHHHHHHTCBE
T ss_pred HHHHHc-CC-CCCCceEEEEE--ecCC-C-CCCCHHHHHHHHH----hcCCCCeEEEEecCcchH--HHHHHHHHcCCCe
Confidence 444433 31 22111222221 3222 1 2356777665543 2444221 111 121111 2345566677663
Q ss_pred cc-cCCccccCCC------CChhHHHHHHHHcCCCcCCC
Q 016605 332 IF-TGEKLLTTPN------NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 332 ~~-~g~~~~t~~~------~~~~~~~~~i~~~G~~p~~~ 363 (386)
=+ .++++...++ .-++..+++++++|+.+...
T Consensus 265 RVGlEDnl~~~~G~~AsNa~lV~~a~~i~~~lGr~vATp 303 (316)
T 3c6c_A 265 RVGLEDNLYLSRGVFATNGQLVERARTVIEHLGMSVATP 303 (316)
T ss_dssp EESTTTCCEEETTEECCHHHHHHHHHHHHHHTTCEECCH
T ss_pred EEccccccCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCH
Confidence 21 1222211111 24566688889999887653
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=89.67 E-value=8.3 Score=33.82 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC-CCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g-~l~~e~l~~Lk~aG~~~v~i 200 (386)
.++++..+.++.+.+.|++-+-+.- + .|. -.+.|+.+++.--.+++-.| .++.+.++...++|.+.+..
T Consensus 43 ~~~~~a~~~a~al~~gGi~~iEvt~--~----t~~----a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvs 112 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLPAAEITF--R----SDA----AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVS 112 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEET--T----STT----HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--C----CCC----HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEe
Confidence 4678899999999999999886643 1 122 23445555432111222222 47899999999999998753
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
. ..+ .+.++.+++.|+.+-.++. |..|+..- .++| .+.+.++ | ...+
T Consensus 113 P-------------~~~----~~vi~~~~~~gi~~ipGv~-----TptEi~~A----~~~G--ad~vK~F---P--a~~~ 159 (232)
T 4e38_A 113 P-------------GFN----PNTVRACQEIGIDIVPGVN-----NPSTVEAA----LEMG--LTTLKFF---P--AEAS 159 (232)
T ss_dssp S-------------SCC----HHHHHHHHHHTCEEECEEC-----SHHHHHHH----HHTT--CCEEEEC---S--TTTT
T ss_pred C-------------CCC----HHHHHHHHHcCCCEEcCCC-----CHHHHHHH----HHcC--CCEEEEC---c--Cccc
Confidence 1 112 2556678888887544322 77776655 3565 6777662 2 2211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
..- ..+...+--+|+.-+ +..|-++ ++.....|.+|+..+..|.
T Consensus 160 ------gG~---~~lkal~~p~p~ip~-~ptGGI~--~~n~~~~l~aGa~~~vgGs 203 (232)
T 4e38_A 160 ------GGI---SMVKSLVGPYGDIRL-MPTGGIT--PSNIDNYLAIPQVLACGGT 203 (232)
T ss_dssp ------THH---HHHHHHHTTCTTCEE-EEBSSCC--TTTHHHHHTSTTBCCEEEC
T ss_pred ------cCH---HHHHHHHHHhcCCCe-eeEcCCC--HHHHHHHHHCCCeEEEECc
Confidence 111 333444445565322 2333344 3334667788988776665
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=89.55 E-value=11 Score=33.77 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChh-------------hHHHHHHHHHHHhhc--CcEEE-Ee--cC---
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-------------NFNQILEYVKDIRDM--GMEVC-CT--LG--- 180 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~-------------~~~~l~~~i~~ik~~--g~~i~-~t--~g--- 180 (386)
+++...+.++.+.+.|++-+-++--..+|. ..|. ..+.++++++++++. .+++. .+ |-
T Consensus 32 ~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~ 111 (271)
T 3nav_A 32 NPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA 111 (271)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 567788888888888988777653221111 1111 124778899999853 45542 22 11
Q ss_pred CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 181 ~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.-.+..++.++++|+|.+.+. .-.+++..+..+.+++.|+.. -+++...-+.+.+....+.
T Consensus 112 ~g~~~f~~~~~~aGvdGvIip-------------Dlp~ee~~~~~~~~~~~gl~~--I~lvap~t~~eri~~i~~~---- 172 (271)
T 3nav_A 112 RGIDDFYQRCQKAGVDSVLIA-------------DVPTNESQPFVAAAEKFGIQP--IFIAPPTASDETLRAVAQL---- 172 (271)
T ss_dssp TCHHHHHHHHHHHTCCEEEET-------------TSCGGGCHHHHHHHHHTTCEE--EEEECTTCCHHHHHHHHHH----
T ss_pred HhHHHHHHHHHHCCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCeE--EEEECCCCCHHHHHHHHHH----
Confidence 123778999999999997762 112344556677889999873 2233223333333333322
Q ss_pred CCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHh-hhhcCccccccCCcc
Q 016605 261 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL-CFLAGANSIFTGEKL 338 (386)
Q Consensus 261 ~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~-~l~~Gan~~~~g~~~ 338 (386)
. ..++......-.-|.. ...+ .+...++...|...+. ++..| +++....+.. .+..||+.++.|..+
T Consensus 173 ~--~gfiY~vs~~GvTG~~----~~~~-~~~~~~v~~vr~~~~~---Pv~vG-fGIst~e~~~~~~~~gADgvIVGSAi 240 (271)
T 3nav_A 173 G--KGYTYLLSRAGVTGAE----TKAN-MPVHALLERLQQFDAP---PALLG-FGISEPAQVKQAIEAGAAGAISGSAV 240 (271)
T ss_dssp C--CSCEEECCCC------------CC-HHHHHHHHHHHHTTCC---CEEEC-SSCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred C--CCeEEEEeccCCCCcc----cCCc-hhHHHHHHHHHHhcCC---CEEEE-CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 2 2233332222222332 1112 3445666666665521 22221 2343333455 788999999999743
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.43 E-value=1.2 Score=39.73 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHh
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.+|+++.+...+ ...++++ ||+. . ....+.+.+.++.+++.|+.+++-.. -+.+.++.-++.
T Consensus 104 t~emi~ial~~k---P~~vtLVPEkreE~TTegGlD-v---~~~~~~L~~~i~~L~~~GIrVSLFID-pd~~qI~aA~~~ 175 (278)
T 3gk0_A 104 TPEMLDIACEIR---PHDACLVPEKRSELTTEGGLD-V---VGHFDAVRAACKQLADAGVRVSLFID-PDEAQIRAAHET 175 (278)
T ss_dssp SHHHHHHHHHHC---CSEEEECCCSGGGBCSSSSBC-T---TTTHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCcCCCcchh-h---hccHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh
Confidence 457776665543 4677776 2221 1 23568899999999999998654332 468899999999
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHH
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 253 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 253 (386)
|.++|-+.-..+.+.+..-.....+++..++.+.+++.|+.|++ |+|-+.+.+..+
T Consensus 176 GAd~IELhTG~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~VnA----GHGL~y~Nv~~i 231 (278)
T 3gk0_A 176 GAPVIELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVNA----GHGLHYTNVQAI 231 (278)
T ss_dssp TCSEEEECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE----CTTCCTTTHHHH
T ss_pred CcCEEEEecchhhccCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHHHHHH
Confidence 99999875433311010000112466777788888999998887 566666665533
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.41 E-value=13 Score=34.19 Aligned_cols=227 Identities=18% Similarity=0.200 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCC-CCCh-hhHHHHHHHHHHHhhc-CcEEEEecC-C--C---CHHHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRDM-GMEVCCTLG-M--L---EKHQAIELK 191 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~-~ge~-~~~~~l~~~i~~ik~~-g~~i~~t~g-~--l---~~e~l~~Lk 191 (386)
..+++||.+.+.++.+.|..-+++-. +++ .|.| ...+.+.+++..|++. ++-+.+|.| . . .++.+..+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~y~e~i~~IR~~~d~iI~~TTgg~~~~~~~~eeR~~~~~ 105 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEAGAGMVHIHA--RDPKDGRPTTDVEVFRYICREIKKQSDVVINVTTGGGGTLGIPVEERAKVVP 105 (314)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHHHHHHHHHHHCCCEEEECSSTTGGGTCCHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEee--cCCCCCCcCCCHHHHHHHHHHHHhcCCeEEEeCCCCcCCCCCCHHHHHHHHH
Confidence 38999999999999999998887733 222 2433 4556777777777743 444555543 2 2 344555555
Q ss_pred HhccCeeecccCch------------------HHHH-----hhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHH
Q 016605 192 KAGLTAYNHNLDTS------------------REFY-----SKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEE 248 (386)
Q Consensus 192 ~aG~~~v~i~le~~------------------~~~~-----~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e 248 (386)
+...+..+++.-+. +..| +.+- ..+++...+.++.+.+.|++...-+ | +..
T Consensus 106 ~~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~N~~~~i~~~~~~~~e~Gi~pE~e~-f----d~g 179 (314)
T 3lot_A 106 ALKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVF-RNTFKDLEALSRIFKENDTKPELEC-Y----DIG 179 (314)
T ss_dssp HHCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEE-CCCHHHHHHHHHHHHHHTCEEEEEE-C----SHH
T ss_pred hcCCceeeecCCCcccccccccccccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCEEEEEE-E----CHH
Confidence 55555555444221 1111 1121 2378888888999999999866532 3 455
Q ss_pred HHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC--Ccceeec-CcccccChhHHHhhh
Q 016605 249 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP--KAMVRLS-AGRVRFSMPEQALCF 325 (386)
Q Consensus 249 d~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp--~~~i~i~-~g~~~~~~~~~~~~l 325 (386)
++.....++++ |.-.....+ .|+- |-+. . -+.+++.+..++..+..+++ +....+. .|+.. -.....++
T Consensus 180 ~l~~~~~l~~~-Gll~~p~~~-~~Vl--Gv~~-G-~~~~p~~L~~~~~~~~~l~~~~~~~Wsv~g~Gr~q--~p~~~~A~ 251 (314)
T 3lot_A 180 QIYNTAFMFHE-GYLEPPLRL-QFIH--GILG-G-IGTAVEDVLFMKQTADRLIGRENYTWSLVGAGRFQ--MPLGTLAV 251 (314)
T ss_dssp HHHHHHHHHHT-TCSCSSEEE-EEEE--CCBT-S-CCCCHHHHHHHHHHHHHHTCGGGEEEEEEECGGGH--HHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCCCceE-EEEe--cCCC-C-CCCCHHHHHHHHHHhhhccCCCCCeEEEEecChhh--HHHHHHHH
Confidence 66555555543 311112222 2221 3221 1 24577877777776655555 3211111 12221 23445667
Q ss_pred hcCccccc-cCCccccCCC-------CChhHHHHHHHHcCCCcCCC
Q 016605 326 LAGANSIF-TGEKLLTTPN-------NDFDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 326 ~~Gan~~~-~g~~~~t~~~-------~~~~~~~~~i~~~G~~p~~~ 363 (386)
..|.|.=+ .++++...++ .-++..+++++++|+.+...
T Consensus 252 ~~GGhvRVGlEDnl~~~~G~lA~sNa~lV~~~~~i~~~lGr~vATp 297 (314)
T 3lot_A 252 IMGGDVRVGLEDSLYIERGKLAKSNAEQVEKMVRIVKELGKRPATP 297 (314)
T ss_dssp HTTCEEEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCEECCH
T ss_pred HcCCceEEccCcccccCCCCCCCCHHHHHHHHHHHHHHcCCCCCCH
Confidence 77777322 1232222222 24567788999999988654
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=89.16 E-value=4.7 Score=37.69 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC--------C-----CC---------hhhHHHHHHHHHHHhhcCcEEEEecC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT--------I-----GR---------KTNFNQILEYVKDIRDMGMEVCCTLG 180 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~--------~-----ge---------~~~~~~l~~~i~~ik~~g~~i~~t~g 180 (386)
+.|...+.++.+++.|++-+-++.-...+ + +. .+..+++..+.+..++.|+.+.+++
T Consensus 33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~- 111 (349)
T 2wqp_A 33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTL- 111 (349)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEee-
Confidence 68899999999999999988776211000 0 00 0234666666677778899987765
Q ss_pred CCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 181 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 181 ~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.+.+.++.|.+.|++.+.|+---. .+ +.-++.+.+.|.++-. =-|+. |.+|+...++.+..-
T Consensus 112 -~d~~svd~l~~~~v~~~KI~S~~~----------~n----~~LL~~va~~gkPviL--stGma-t~~Ei~~Ave~i~~~ 173 (349)
T 2wqp_A 112 -FSRAAALRLQRMDIPAYKIGSGEC----------NN----YPLIKLVASFGKPIIL--STGMN-SIESIKKSVEIIREA 173 (349)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGGT----------TC----HHHHHHHHTTCSCEEE--ECTTC-CHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhcCCCEEEECcccc----------cC----HHHHHHHHhcCCeEEE--ECCCC-CHHHHHHHHHHHHHc
Confidence 679999999999999998843111 01 1233444444544211 11222 666776666666655
Q ss_pred C
Q 016605 261 P 261 (386)
Q Consensus 261 ~ 261 (386)
|
T Consensus 174 G 174 (349)
T 2wqp_A 174 G 174 (349)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=89.02 E-value=2.1 Score=36.87 Aligned_cols=196 Identities=16% Similarity=0.190 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc-cCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCC-HHHHHHHHHhccCeee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAA-WRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLE-KHQAIELKKAGLTAYN 199 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g-~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~-~e~l~~Lk~aG~~~v~ 199 (386)
++..+.+.++.+.+.|++.+.+.-- +.. +.....-.+.++++++. +..+.+.....+ ++.++.+.++|++.+.
T Consensus 14 D~~~~~~~~~~~~~~G~~~i~~~~~dg~~----~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~ 89 (220)
T 2fli_A 14 DYANFASELARIEETDAEYVHIDIMDGQF----VPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 89 (220)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSS----SSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCCC----CCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEE
Confidence 3345566666777788887655321 110 11111124556666643 445433333223 3357999999999998
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+..+.. .... +.++.+++.|..+...+ ... |..+. ++.+.. ..+.+-+....| |..
T Consensus 90 vh~~~~----------~~~~---~~~~~~~~~g~~i~~~~--~~~-t~~e~---~~~~~~---~~d~vl~~~~~~--g~~ 145 (220)
T 2fli_A 90 IHTEST----------RHIH---GALQKIKAAGMKAGVVI--NPG-TPATA---LEPLLD---LVDQVLIMTVNP--GFG 145 (220)
T ss_dssp EEGGGC----------SCHH---HHHHHHHHTTSEEEEEE--CTT-SCGGG---GGGGTT---TCSEEEEESSCT--TCS
T ss_pred EccCcc----------ccHH---HHHHHHHHcCCcEEEEE--cCC-CCHHH---HHHHHh---hCCEEEEEEECC--CCc
Confidence 754331 2222 44555666786644333 112 22222 111122 245554433333 222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp----~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
-....+...++ +...|.+.+ +..+-+.+| ++ ++.-.....+||+.+..|..+... .++.+..+.+++
T Consensus 146 g~~~~~~~~~~----i~~~~~~~~~~~~~~~i~v~GG-I~--~~~~~~~~~~Gad~vvvGsai~~~--~d~~~a~~~~~~ 216 (220)
T 2fli_A 146 GQAFIPECLEK----VATVAKWRDEKGLSFDIEVDGG-VD--NKTIRACYEAGANVFVAGSYLFKA--SDLVSQVQTLRT 216 (220)
T ss_dssp SCCCCGGGHHH----HHHHHHHHHHTTCCCEEEEESS-CC--TTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHH
T ss_pred ccccCHHHHHH----HHHHHHHHHhcCCCceEEEECc-CC--HHHHHHHHHcCCCEEEEChHHhCC--CCHHHHHHHHHH
Confidence 11111111222 222222221 222233333 22 222234667799999888744332 456666555543
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=88.80 E-value=10 Score=32.14 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCC-H-HHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE-K-HQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~-~-e~l~~Lk~aG~~~ 197 (386)
.+.++.++.++.+.. |+.-+.+.- +.....=.+.++.+++. +..+.+.....+ . ..++.+.++|+|.
T Consensus 10 ~~~~~~~~~~~~~~~-~v~~iev~~--------~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~ 80 (207)
T 3ajx_A 10 LSTEAALELAGKVAE-YVDIIELGT--------PLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADL 80 (207)
T ss_dssp SCHHHHHHHHHHHGG-GCSEEEECH--------HHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHhhc-cCCEEEECc--------HHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCE
Confidence 478888888888876 777666632 22233334566666644 556543332233 3 4488999999999
Q ss_pred eecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeE-eeeeeeec-
Q 016605 198 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESV-PINALLAV- 275 (386)
Q Consensus 198 v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v-~~~~f~P~- 275 (386)
+.+.....+ +..-++++.+++.|+.+.+.+ .. -.|.++..+. +.+++ ++.+ .+..+.|.
T Consensus 81 v~vh~~~~~------------~~~~~~~~~~~~~g~~~gv~~-~s-~~~p~~~~~~---~~~~g--~d~v~~~~~~~~~~ 141 (207)
T 3ajx_A 81 VTVLGSADD------------STIAGAVKAAQAHNKGVVVDL-IG-IEDKATRAQE---VRALG--AKFVEMHAGLDEQA 141 (207)
T ss_dssp EEEETTSCH------------HHHHHHHHHHHHHTCEEEEEC-TT-CSSHHHHHHH---HHHTT--CSEEEEECCHHHHT
T ss_pred EEEeccCCh------------HHHHHHHHHHHHcCCceEEEE-ec-CCChHHHHHH---HHHhC--CCEEEEEecccccc
Confidence 986544321 122345566777788753222 11 2255553333 23444 6666 33333332
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 276 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 276 ~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
+|. .+.. +.++ ..... +..+-+.+| .+++.....+.+||+.+..|..+... .++.+..+.+++
T Consensus 142 ~g~-----~~~~--~~i~--~~~~~---~~pi~v~GG---I~~~~~~~~~~aGad~vvvGsaI~~~--~dp~~~~~~~~~ 204 (207)
T 3ajx_A 142 KPG-----FDLN--GLLA--AGEKA---RVPFSVAGG---VKVATIPAVQKAGAEVAVAGGAIYGA--ADPAAAAKELRA 204 (207)
T ss_dssp STT-----CCTH--HHHH--HHHHH---TSCEEEESS---CCGGGHHHHHHTTCSEEEESHHHHTS--SSHHHHHHHHHH
T ss_pred cCC-----CchH--HHHH--HhhCC---CCCEEEECC---cCHHHHHHHHHcCCCEEEEeeeccCC--CCHHHHHHHHHH
Confidence 122 1211 2222 11111 222333332 22333455688999999888644322 245555555543
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.57 E-value=4.5 Score=35.39 Aligned_cols=200 Identities=11% Similarity=0.093 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCC-HHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE-KHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~-~e~l~~Lk~aG~~~v 198 (386)
+.-.+.++++.+.+.|++.+++ +..++.. | ++..=...++.+++. ...+-+..-..+ ...++.+.+ .|.+
T Consensus 16 D~~~l~~~i~~~~~~g~d~iHvDvmDg~fv---p-n~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~i 89 (227)
T 1tqx_A 16 NISKLAEETQRMESLGAEWIHLDVMDMHFV---P-NLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQL 89 (227)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSS---S-CBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSEE
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEEeCCcC---c-chhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCEE
Confidence 3344555666666778876544 1111210 1 111112455666643 233322221122 234455555 7888
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..++.+ .+..+.++..+.+++.|+++...+ ..+...+. ++.+..++ .++.+-+....| |.
T Consensus 90 tvH~ea~~---------~~~~~~i~~~~~i~~~G~k~gval--np~tp~~~----~~~~l~~g-~~D~VlvmsV~p--Gf 151 (227)
T 1tqx_A 90 TFHFEALN---------EDTERCIQLAKEIRDNNLWCGISI--KPKTDVQK----LVPILDTN-LINTVLVMTVEP--GF 151 (227)
T ss_dssp EEEGGGGT---------TCHHHHHHHHHHHHTTTCEEEEEE--CTTSCGGG----GHHHHTTT-CCSEEEEESSCT--TC
T ss_pred EEeecCCc---------cCHHHHHHHHHHHHHcCCeEEEEe--CCCCcHHH----HHHHhhcC-CcCEEEEeeecc--CC
Confidence 87776631 123333332228889998876654 23333222 23333432 267777777665 33
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
.-....+ ..+..+...|.+.++..+.+.+| ++.+.......+|||.++.|.. ... ..++.+..+.+++
T Consensus 152 ~gq~f~~----~~l~ki~~lr~~~~~~~I~VdGG---I~~~ti~~~~~aGAd~~V~Gsa-If~-~~d~~~~i~~l~~ 219 (227)
T 1tqx_A 152 GGQSFMH----DMMGKVSFLRKKYKNLNIQVDGG---LNIETTEISASHGANIIVAGTS-IFN-AEDPKYVIDTMRV 219 (227)
T ss_dssp SSCCCCG----GGHHHHHHHHHHCTTCEEEEESS---CCHHHHHHHHHHTCCEEEESHH-HHT-CSSHHHHHHHHHH
T ss_pred CCcccch----HHHHHHHHHHHhccCCeEEEECC---CCHHHHHHHHHcCCCEEEEeHH-HhC-CCCHHHHHHHHHH
Confidence 2111112 22333444555555444555543 4455556788899999998863 332 2346665555543
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.00 E-value=15 Score=33.23 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec----CCCC-HH---HHHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL----GMLE-KH---QAIELKK 192 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~----g~l~-~e---~l~~Lk~ 192 (386)
..+.++|.+.++++.+.|+..||+. |.+.+...+ .++..++.+++-. |..+ .. ..+...+
T Consensus 70 ~~T~~dI~~lc~eA~~~g~aaVCV~---------P~~V~~a~~---~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~ 137 (288)
T 3oa3_A 70 SATGSQIDVLCAEAKEYGFATVCVR---------PDYVSRAVQ---YLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQ 137 (288)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEC---------GGGHHHHHH---HTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEC---------HHHHHHHHH---HcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHH
Confidence 3789999999999999999999884 333333333 3455567765433 3222 22 2334456
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeee
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPIN 270 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~ 270 (386)
.|.|.|.+-++.. .+ ..++++.+.+-|+.++++ +-. ..-+|+=. --+.+++....+...+.| .++|.-.
T Consensus 138 ~GAdEIDmVINig-----~l-k~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaG--ADfVKTS 208 (288)
T 3oa3_A 138 NGASELDMVMNYP-----WL-SEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAG--ADYVKTS 208 (288)
T ss_dssp TTCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTT--CSEEECC
T ss_pred cCCCEEEEEeehh-----hh-cCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcC--CCEEEcC
Confidence 6999988644332 01 245788888888877775 322 24455433 247888988889999997 7777664
Q ss_pred e-eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 271 A-LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 271 ~-f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
. |.+ ...+.++..-|....+..-++.-+..++|--++ +.....+.+||+++
T Consensus 209 TGf~~---------~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~--edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 209 TGFNG---------PGASIENVSLMSAVCDSLQSETRVKASGGIRTI--EDCVKMVRAGAERL 260 (288)
T ss_dssp CSSSS---------CCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred CCCCC---------CCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCH--HHHHHHHHcCCcee
Confidence 2 221 234556543333333322344445555543222 34566778999977
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=15 Score=32.70 Aligned_cols=157 Identities=11% Similarity=0.125 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHh--ccCee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKA--GLTAY 198 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~a--G~~~v 198 (386)
.+.+.+++.+++..+.|.+-+-+.+|.. .. ..-+.+..++..+++. ++.+++ .....+.++.-.++ |.+-|
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~~-~v---~~~ee~~rvv~~i~~~~~~pisI--DT~~~~v~~aAl~a~~Ga~iI 95 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNVGPA-VQ---DKVSAMEWLVEVTQEVSNLTLCL--DSTNIKAIEAGLKKCKNRAMI 95 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC--------CHHHHHHHHHHHHHTTCCSEEEE--ECSCHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCC-CC---ChHHHHHHHHHHHHHhCCCeEEE--eCCCHHHHHHHHhhCCCCCEE
Confidence 6899999999999999998887766422 11 2345555556656543 555544 44678888888887 87776
Q ss_pred e-cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE--eecCCCHHHH----HHHHHHHhcCCCCCCeEeeee
Q 016605 199 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDR----VGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 199 ~-i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~----~~~l~~l~~l~~~~~~v~~~~ 271 (386)
+ ++.. .+..-+.+..+.+.|..+..--+ -|..+|.++. .+.++.+.+.|...+.+.+-
T Consensus 96 Ndvs~~--------------~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilD- 160 (262)
T 1f6y_A 96 NSTNAE--------------REKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYID- 160 (262)
T ss_dssp EEECSC--------------HHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEE-
T ss_pred EECCCC--------------cccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEe-
Confidence 6 3321 22223556677888987444333 3444555555 44455555665322344443
Q ss_pred eeecCCCC-CCCCCCCCHHHHHHHHHHHHHhC-CC
Q 016605 272 LLAVKGTP-LQDQKPVEIWEMIRMIATARIVM-PK 304 (386)
Q Consensus 272 f~P~~gT~-l~~~~~~s~~e~~~~~a~~R~~l-p~ 304 (386)
||.- +.. ..-...+.++.+...+..+ |.
T Consensus 161 ----Pg~g~~g~-~~~~~~~~l~~l~~l~~~~~pg 190 (262)
T 1f6y_A 161 ----PLILPANV-AQDHAPEVLKTLQQIKMLADPA 190 (262)
T ss_dssp ----CCCCCTTT-CTTHHHHHHHHHHHHHTCCSSC
T ss_pred ----CCCCcCCC-ChHHHHHHHHHHHHHHHHhCCC
Confidence 3331 221 1113345566666666544 44
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=87.12 E-value=17 Score=32.86 Aligned_cols=223 Identities=11% Similarity=0.029 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh-hhHHHHHHHHHHHhhc--CcEEEEecCCC---CHHHHHHHHHhcc
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGML---EKHQAIELKKAGL 195 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~-~~~~~l~~~i~~ik~~--g~~i~~t~g~l---~~e~l~~Lk~aG~ 195 (386)
.+++||.+.+.++.+.|..-+++-. +++.|.| ...+.+.+++..+++. ++-+.+|.|-. .++.+..+ +...
T Consensus 31 vTpeEia~~A~~~~~AGAaivHlH~--Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~P 107 (284)
T 3chv_A 31 ITVSEQVESTQEAFEAGAAIAHCHV--RNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKP 107 (284)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEEECE--ECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeee--cCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCC
Confidence 8999999999999999998888743 2322444 4567778888888754 45565554322 23334444 4455
Q ss_pred CeeecccCchH-HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeee
Q 016605 196 TAYNHNLDTSR-EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 274 (386)
Q Consensus 196 ~~v~i~le~~~-~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P 274 (386)
+..++++-+.. . +.+- ..+++...+.++.+++.|+.....+ | +..++.....++++ |. ++.-.+..|+-
T Consensus 108 e~aSl~~Gs~Nf~--~~v~-~n~~~~~~~~~~~~~e~Gv~pE~e~-f----d~g~l~~~~~l~~~-Gl-l~~p~~~~~vl 177 (284)
T 3chv_A 108 DMASLSVGSNNFP--SRVY-ENPPDLVDWLAAQMRSYRVTPEIEA-F----DLSHILRAIDMHGR-GL-LYGKLYVQFVM 177 (284)
T ss_dssp SEEEECCSCEECS--SSEE-CCCHHHHHHHHHHHHHHTCEEEEEE-S----SHHHHHHHHHHHHT-TC-SCSSCEEEEEE
T ss_pred CEEEecCcccccC--Cccc-cCCHHHHHHHHHHHHHcCCEEEEEE-E----CHHHHHHHHHHHHc-CC-CCCCceEEEEE
Confidence 66665554431 0 1111 2468888888999999999876632 2 34555555444433 31 11111122221
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec-CcccccChhHHHhhhhcCccccc-cCCccccCCC-------CC
Q 016605 275 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIF-TGEKLLTTPN-------ND 345 (386)
Q Consensus 275 ~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~~-~g~~~~t~~~-------~~ 345 (386)
|-+. . -+.+++.+..++.....-.|.....+. -|+..+ .....++..|.+.=+ .++++...++ .-
T Consensus 178 --Gv~~-g-~~~~~~~L~~~~~~~p~~~~~~~ws~~g~Gr~q~--p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~l 251 (284)
T 3chv_A 178 --GVKN-A-MPADREVFDFYVRMMRTRAPQAEWCAAGIGANQL--TVNEWAIAAGGHTRTGLEDNIRLDRQTLAPSNAAL 251 (284)
T ss_dssp --CCTT-S-CCCCHHHHHHHHHHHHHHCTTSEEEEEECTTHHH--HHHHHHHHTTCEEEESTTTCCBSSSSCBCCCHHHH
T ss_pred --ecCC-C-CCCCHHHHHHHHHhccCCCCCceEEEEecCcchh--HHHHHHHHcCCCeEEecccccCCCCCCCCCCHHHH
Confidence 2211 1 245777777666543221111211111 111111 234556677777322 1232222222 13
Q ss_pred hhHHHHHHHHcCCCcCCC
Q 016605 346 FDADQLMFKVLGLTPKAP 363 (386)
Q Consensus 346 ~~~~~~~i~~~G~~p~~~ 363 (386)
++...++++++|+.+...
T Consensus 252 V~~~~~i~~~lgr~vAtp 269 (284)
T 3chv_A 252 VRRSVELCDKYQRPVASW 269 (284)
T ss_dssp HHHHHHHHHHTTCCBCCH
T ss_pred HHHHHHHHHHcCCCCCCH
Confidence 566678888999988653
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=86.49 E-value=12 Score=34.41 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEE-ecCC--CCHHHHHHHHHhccC
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCC-TLGM--LEKHQAIELKKAGLT 196 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~-t~g~--l~~e~l~~Lk~aG~~ 196 (386)
+.+.+.++...+.|.+-+.+.+....+...+...++..+.++.+.+ .++++++ ..|. .+.+.++.-.++|.+
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI~DT~~~~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSG 149 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEEECCCCCCCCHHHHHHHHHhCCC
Confidence 7888888888899999888877544444444566777778888874 3666654 3222 678888888888876
|
| >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* | Back alignment and structure |
|---|
Probab=85.80 E-value=3.7 Score=36.34 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccc----CCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeee
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~----~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~ 199 (386)
.+|+++.+...+ ...++++=-. +..+|=+...+.+.+.++.+++.|+.++.-.. -+.+.++.-++.|.++|-
T Consensus 75 t~emi~ial~~k---P~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GAd~IE 150 (260)
T 3o6c_A 75 NDEILNLALKLK---PHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN-PSLEDIEKSKILKAQFIE 150 (260)
T ss_dssp CHHHHHHHHHHC---CSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCCCEEE
Confidence 357776655543 4577776110 00111112557899999999999998654332 468899999999999998
Q ss_pred cccCchHHHHh----hhCC-------------------CCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHH
Q 016605 200 HNLDTSREFYS----KIIT-------------------TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 252 (386)
Q Consensus 200 i~le~~~~~~~----~i~~-------------------~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 252 (386)
+.-..+.+.+. .+.+ ...++...++.+.+++.|+.|++ |+|-+.+.+..
T Consensus 151 LhTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A~~lGL~VnA----GHGL~y~Nv~~ 222 (260)
T 3o6c_A 151 LHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAA----GHGLNYKNVKP 222 (260)
T ss_dssp ECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE----CTTCCTTTTHH
T ss_pred EechHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHHHHHH
Confidence 86655522222 1111 11344555667777888988876 57766666553
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=85.57 E-value=9.3 Score=35.29 Aligned_cols=135 Identities=14% Similarity=0.167 Sum_probs=75.4
Q ss_pred HHHHHHHHHHH-HcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEe-cC--CCCHHHHHHHHHhccCe--
Q 016605 125 DAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCT-LG--MLEKHQAIELKKAGLTA-- 197 (386)
Q Consensus 125 eeI~~~~~~~~-~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t-~g--~l~~e~l~~Lk~aG~~~-- 197 (386)
+++.+.++... +.|.+-+.+.+..+.+.+.+...+...+.++.+.+ .++++++. .| ..+.+.++.-.++|.+.
T Consensus 80 ~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~ 159 (323)
T 4djd_D 80 NEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENL 159 (323)
T ss_dssp TCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCC
Confidence 45777777777 88999888865444454445556677777888764 46666554 22 35678888888888552
Q ss_pred -ee-cccCchHHHHhhhC---------CCCCHHHHHHHHHHHHHcCCe---eeEeEEee-cCCCHHHHHHHHHHHhc
Q 016605 198 -YN-HNLDTSREFYSKII---------TTRSYDERLETLKHVREAGIN---VCSGGIIG-LGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 198 -v~-i~le~~~~~~~~i~---------~~~s~~~~l~~i~~a~~~Gi~---v~~~~i~G-lget~ed~~~~l~~l~~ 259 (386)
|+ ++.+..++..+.+. ...+.+...+.++.+.++|+. +-.+-.+| +|-+.++-.++++.++.
T Consensus 160 lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 160 LLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp EEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred eEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence 22 22221122222111 111333344444556666662 44454555 35566665555555543
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=85.45 E-value=13 Score=32.24 Aligned_cols=195 Identities=16% Similarity=0.229 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcE----EEEecCCCCHHHHHHHHHhccCee
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GME----VCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~----i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
...+.+.++.+.+.|++-+.+.--+.+.. | ....-.+.++.+++. ... +.+ +. ..+.++.+.++|+|.+
T Consensus 18 ~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv--~-~~~~~~~~~~~lr~~~~~~~~v~lmv-~d--~~~~i~~~~~agad~v 91 (228)
T 1h1y_A 18 FANLAAEADRMVRLGADWLHMDIMDGHFV--P-NLTIGAPVIQSLRKHTKAYLDCHLMV-TN--PSDYVEPLAKAGASGF 91 (228)
T ss_dssp GGGHHHHHHHHHHTTCSEEEEEEEBSSSS--S-CBCBCHHHHHHHHTTCCSEEEEEEES-SC--GGGGHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCcC--c-chhhCHHHHHHHHhhcCCcEEEEEEe-cC--HHHHHHHHHHcCCCEE
Confidence 34455566677778988765531110100 1 001122555556543 222 222 21 2456888889999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcC--CCCCCeEeeeeeeecC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL--PTHPESVPINALLAVK 276 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l--~~~~~~v~~~~f~P~~ 276 (386)
.+..+..+ ..+ .+.++.+++.|+.+.. .+... |..+. ++.+... + ++.+.+....|
T Consensus 92 ~vH~~~~~---------~~~---~~~~~~i~~~g~~igv--~~~p~-t~~e~---~~~~~~~~~~--~d~vl~~sv~p-- 149 (228)
T 1h1y_A 92 TFHIEVSR---------DNW---QELIQSIKAKGMRPGV--SLRPG-TPVEE---VFPLVEAENP--VELVLVMTVEP-- 149 (228)
T ss_dssp EEEGGGCT---------TTH---HHHHHHHHHTTCEEEE--EECTT-SCGGG---GHHHHHSSSC--CSEEEEESSCT--
T ss_pred EECCCCcc---------cHH---HHHHHHHHHcCCCEEE--EEeCC-CCHHH---HHHHHhcCCC--CCEEEEEeecC--
Confidence 87654421 111 2555667778877652 22222 32222 2222231 2 56777766655
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 277 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 277 gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
|+--....+ ..++.+...|.+.++..+-+.+| ++++.......+|||.++.|..+... .++++..+.+++
T Consensus 150 g~~g~~~~~----~~l~~i~~~~~~~~~~pi~v~GG---I~~~ni~~~~~aGaD~vvvGsai~~~--~d~~~~~~~l~~ 219 (228)
T 1h1y_A 150 GFGGQKFMP----EMMEKVRALRKKYPSLDIEVDGG---LGPSTIDVAASAGANCIVAGSSIFGA--AEPGEVISALRK 219 (228)
T ss_dssp TCSSCCCCG----GGHHHHHHHHHHCTTSEEEEESS---CSTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHH
T ss_pred CCCcccCCH----HHHHHHHHHHHhcCCCCEEEECC---cCHHHHHHHHHcCCCEEEECHHHHCC--CCHHHHHHHHHH
Confidence 322111111 22333444555554433333443 22333345667799999888644322 345555555543
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=85.43 E-value=7.7 Score=34.47 Aligned_cols=125 Identities=12% Similarity=0.066 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecC----CCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g----~l~~e~l~~Lk~aG~~~v 198 (386)
..+.+.+.++.+++.|++.|+|+.= ++ .| ....+.+.++++..+ ++++..+-. .-..+.++.|.+.|+++|
T Consensus 71 E~~~M~~Di~~~~~~GadGvV~G~L-t~-dg-~iD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~ale~L~~lG~~rI 145 (256)
T 1twd_A 71 EFAAILEDVRTVRELGFPGLVTGVL-DV-DG-NVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARV 145 (256)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCB-CT-TS-SBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeE-CC-CC-CcCHHHHHHHHHHhC--CCcEEEECchhccCCHHHHHHHHHHcCCCEE
Confidence 3566677778888999999988542 11 23 356777888887665 445433311 123667999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
.-+=.. .+..+-++.++.+.+ ++ .+.+|.|-|-+.+.+.+++ ..| +..+.+..-
T Consensus 146 LTSG~~-----------~~a~~g~~~L~~Lv~~a~---~i~Im~GgGv~~~Ni~~l~----~tG--v~e~H~Sa~ 200 (256)
T 1twd_A 146 LTSGQK-----------SDALQGLSKIMELIAHRD---APIIMAGAGVRAENLHHFL----DAG--VLEVHSSAG 200 (256)
T ss_dssp EECTTS-----------SSTTTTHHHHHHHHTSSS---CCEEEEESSCCTTTHHHHH----HHT--CSEEEECCE
T ss_pred ECCCCC-----------CCHHHHHHHHHHHHHhhC---CcEEEecCCcCHHHHHHHH----HcC--CCeEeECCc
Confidence 753111 112222344455444 34 6778888887777777664 233 455555433
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=83.49 E-value=4 Score=38.00 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhc-cCeee
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYN 199 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG-~~~v~ 199 (386)
.+.++..+.++.+.+.|+..+.+.++.......+.......+.++.+++ .++++..+.|..+.+.++++.+.| +|.|.
T Consensus 226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~ 305 (338)
T 1z41_A 226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEe
Confidence 4678888888888888998888866532100000000112445555653 467777766766888888888888 88888
Q ss_pred cc
Q 016605 200 HN 201 (386)
Q Consensus 200 i~ 201 (386)
++
T Consensus 306 iG 307 (338)
T 1z41_A 306 IG 307 (338)
T ss_dssp EC
T ss_pred ec
Confidence 75
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=83.20 E-value=6 Score=34.79 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
..+.++.+.+.|++.+.+........+... -.++++.+++ .++++....|..+.+.++.+.++|++.+.++-..+
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~----~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l 112 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGTKSGY----DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAV 112 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTCSSCC----CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccCCCcc----cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHh
Confidence 345566667789999987643211111111 2456677764 57888888899999999999999999999875443
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=83.00 E-value=12 Score=37.11 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCCCCHHHHHHHHHhccCeeeccc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 202 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~l 202 (386)
++-.+.++.+.+.|++-+++-+.. | .-+..++.++.+|+. .+.+..- +..+.+..+.|.++|+|.+-+++
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ah----G---hs~~v~~~i~~ik~~~p~~~viaG-NVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQ----G---NSVYQIEFIKWIKQTYPKIDVIAG-NVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSC----C---CSHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHHTCSEEEECS
T ss_pred ccHHHHHHHHHhcCCcEEEEeccc----c---ccHHHHHHHHHHHhhCCcceEEec-cccCHHHHHHHHHcCCCEEeecC
Confidence 345667788889999988885432 2 225678888888865 3444332 23689999999999999998877
Q ss_pred CchHHHHhhhCCC--------CCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 203 DTSREFYSKIITT--------RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 203 e~~~~~~~~i~~~--------~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
-.. .+|.+ .....++++.+.+++.|+++.++-=+ .+.-|+.+-+. .| .+.|-+..
T Consensus 352 GpG-----SiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI---~~sGDi~KAla----aG--Ad~VMlGs 414 (556)
T 4af0_A 352 GSG-----SICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGI---GNIGHIAKALA----LG--ASAVMMGG 414 (556)
T ss_dssp SCS-----TTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCC---CSHHHHHHHHH----TT--CSEEEEST
T ss_pred CCC-----cccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCc---CcchHHHHHhh----cC--CCEEEEch
Confidence 443 12221 13567778888889999885553211 24556555442 32 45555543
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=82.76 E-value=12 Score=34.90 Aligned_cols=203 Identities=11% Similarity=0.055 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHcCCc-----EEEEecccCCC---------CCCh---------hhHHHHHHHHHHHhhcCcEEEEec
Q 016605 123 TKDAVMQAAQKAKEAGST-----RFCMGAAWRDT---------IGRK---------TNFNQILEYVKDIRDMGMEVCCTL 179 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~-----~v~l~~g~~~~---------~ge~---------~~~~~l~~~i~~ik~~g~~i~~t~ 179 (386)
+.+-..+.++.+++.|.. .|-||.-...+ .... +..+++..+.+..++.|+.+.+++
T Consensus 19 dle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~st~ 98 (350)
T 3g8r_A 19 NVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKANGFKAICTP 98 (350)
T ss_dssp CSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcEEecc
Confidence 456666667777777766 77777421100 0000 233556666666678899987765
Q ss_pred CCCCHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhc
Q 016605 180 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 259 (386)
Q Consensus 180 g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 259 (386)
.+.+.++.|.+.|++.+.|+---. .++ .-++.+.+.|.++- +=-|+. |.+|+...++++..
T Consensus 99 --fD~~svd~l~~~~v~~~KI~S~~~----------~N~----pLL~~va~~gKPvi--LstGms-tl~Ei~~Ave~i~~ 159 (350)
T 3g8r_A 99 --FDEESVDLIEAHGIEIIKIASCSF----------TDW----PLLERIARSDKPVV--ASTAGA-RREDIDKVVSFMLH 159 (350)
T ss_dssp --CSHHHHHHHHHTTCCEEEECSSST----------TCH----HHHHHHHTSCSCEE--EECTTC-CHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHcCCCEEEECcccc----------cCH----HHHHHHHhhCCcEE--EECCCC-CHHHHHHHHHHHHH
Confidence 678999999999999998842111 112 33455555666521 112333 89999999999987
Q ss_pred CCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc-ccChhHHHhhhhcCcccc---ccC
Q 016605 260 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV-RFSMPEQALCFLAGANSI---FTG 335 (386)
Q Consensus 260 l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~-~~~~~~~~~~l~~Gan~~---~~g 335 (386)
-+ .+.+-++...-+| .+...--++.+...+..+|...+-.+. .. .-.......++..||.-| ++-
T Consensus 160 ~g--~~viLlhC~s~YP--------t~~~~~nL~aI~~Lk~~fp~lpVG~Sd-Ht~g~~~~~~~AAvAlGA~vIEkH~tl 228 (350)
T 3g8r_A 160 RG--KDLTIMHCVAEYP--------TPDDHLHLARIKTLRQQYAGVRIGYST-HEDPDLMEPIMLAVAQGATVFEKHVGL 228 (350)
T ss_dssp TT--CCEEEEECCCCSS--------CCGGGCCTTHHHHHHHHCTTSEEEEEE-CCCSSCCHHHHHHHHTTCCEEEEEBCC
T ss_pred cC--CCEEEEecCCCCC--------CCcccCCHHHHHHHHHHCCCCCEEcCC-CCCCCccHHHHHHHHcCCCEEEEecCc
Confidence 75 2322222211111 111111234456667777654333320 00 000122346777888744 222
Q ss_pred Ccccc---CCCCChhHHHHHHHH
Q 016605 336 EKLLT---TPNNDFDADQLMFKV 355 (386)
Q Consensus 336 ~~~~t---~~~~~~~~~~~~i~~ 355 (386)
++-.. ....++++..+|+++
T Consensus 229 dr~~g~D~~~Sl~P~ef~~lv~~ 251 (350)
T 3g8r_A 229 PTDQYGINNYSANPEQVRRWLAA 251 (350)
T ss_dssp CBTTBCCCTTCBCHHHHHHHHHH
T ss_pred ccCCCCcccccCCHHHHHHHHHH
Confidence 22111 233577777666654
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=82.44 E-value=26 Score=31.04 Aligned_cols=202 Identities=14% Similarity=0.149 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCC-CChh-------------hHHHHHHHHHHHhhcCcEEE-Ee--cC---CC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-------------NFNQILEYVKDIRDMGMEVC-CT--LG---ML 182 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-ge~~-------------~~~~l~~~i~~ik~~g~~i~-~t--~g---~l 182 (386)
+++.-.+.++.+.+.|++-+-++--..++. ..|. ..+.++++++++++. +++. .+ |- .-
T Consensus 26 ~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~Pivlm~Y~N~i~~~G 104 (252)
T 3tha_A 26 NLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK-KALVFMVYYNLIFSYG 104 (252)
T ss_dssp CHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS-SEEEEECCHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC-CCEEEEeccCHHHHhh
Confidence 678888888888889998777753222221 1121 236788888888743 5532 22 10 12
Q ss_pred CHHHHHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCC
Q 016605 183 EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT 262 (386)
Q Consensus 183 ~~e~l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~ 262 (386)
.+..++.++++|++.+-+. .-.+++..+..+.++++|+.. -+++...-+. ++. +.+.+..
T Consensus 105 ~e~F~~~~~~aGvdG~Iip-------------DLP~eE~~~~~~~~~~~Gl~~--I~lvaP~t~~-eRi---~~ia~~a- 164 (252)
T 3tha_A 105 LEKFVKKAKSLGICALIVP-------------ELSFEESDDLIKECERYNIAL--ITLVSVTTPK-ERV---KKLVKHA- 164 (252)
T ss_dssp HHHHHHHHHHTTEEEEECT-------------TCCGGGCHHHHHHHHHTTCEE--CEEEETTSCH-HHH---HHHHTTC-
T ss_pred HHHHHHHHHHcCCCEEEeC-------------CCCHHHHHHHHHHHHHcCCeE--EEEeCCCCcH-HHH---HHHHHhC-
Confidence 4778999999999998762 223444456667788999874 2333333333 333 2333332
Q ss_pred CCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccC-
Q 016605 263 HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT- 341 (386)
Q Consensus 263 ~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~- 341 (386)
..++.. +...|+-=. ......+...++...|...+ +++..| ++++...+...+..+|+.++.|..+...
T Consensus 165 -~gFiY~---Vs~~GvTG~--~~~~~~~~~~~v~~vr~~~~---~Pv~vG-fGIst~e~a~~~~~~ADGVIVGSAiVk~i 234 (252)
T 3tha_A 165 -KGFIYL---LASIGITGT--KSVEEAILQDKVKEIRSFTN---LPIFVG-FGIQNNQDVKRMRKVADGVIVGTSIVKCF 234 (252)
T ss_dssp -CSCEEE---ECCSCSSSC--SHHHHHHHHHHHHHHHTTCC---SCEEEE-SSCCSHHHHHHHTTTSSEEEECHHHHHHT
T ss_pred -CCeEEE---EecCCCCCc--ccCCCHHHHHHHHHHHHhcC---CcEEEE-cCcCCHHHHHHHHhcCCEEEECHHHHHHH
Confidence 223322 333332211 11112344556666665542 122221 2343444556666789999999754322
Q ss_pred CCCChhHHHHHHHH
Q 016605 342 PNNDFDADQLMFKV 355 (386)
Q Consensus 342 ~~~~~~~~~~~i~~ 355 (386)
...+.++....+++
T Consensus 235 ~~~~~~~~~~~~~~ 248 (252)
T 3tha_A 235 KQGNLDIIMKDIEE 248 (252)
T ss_dssp TSSCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHH
Confidence 12245555555544
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=82.32 E-value=3.3 Score=38.65 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCC----CCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhc-cC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT----IGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LT 196 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~----~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG-~~ 196 (386)
+.++..+.++.+.+.|++.+.+..|.... .++. ...++++.+++ .++++..+.|..+.+.++++.+.| +|
T Consensus 227 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~----~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD 302 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPG----YQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRAD 302 (340)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTT----TTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCcc----ccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCee
Confidence 45667777777777777777665432111 0111 12344455553 356666666666777777777776 77
Q ss_pred eeecc
Q 016605 197 AYNHN 201 (386)
Q Consensus 197 ~v~i~ 201 (386)
.|.++
T Consensus 303 ~V~iG 307 (340)
T 3gr7_A 303 LVFLG 307 (340)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77764
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=82.28 E-value=8.4 Score=35.61 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC------------C---CCChhhHHHHHHHHHHHhh-c--CcEEEEecCCCC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD------------T---IGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 183 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~------------~---~ge~~~~~~l~~~i~~ik~-~--g~~i~~t~g~l~ 183 (386)
++.+++.+.++.+.+.|++.|.+.+++.. . .| +......++.++.+++ . ++++..+.|..+
T Consensus 222 ~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g-~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~ 300 (336)
T 1f76_A 222 LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG-RPLQLKSTEIIRRLSLELNGRLPIIGVGGIDS 300 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE-GGGHHHHHHHHHHHHHHHTTSSCEEEESSCCS
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCC-chhHHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 56778888899999999999887654210 0 12 1123455677777764 3 688888889889
Q ss_pred HHHHHHHHHhccCeeecc
Q 016605 184 KHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~ 201 (386)
.+.+.++.++|+|.|.++
T Consensus 301 ~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 301 VIAAREKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHCCCCEEEee
Confidence 888888888999999875
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=81.92 E-value=9.1 Score=35.13 Aligned_cols=108 Identities=18% Similarity=0.122 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCC-C----ChhhHHHHHHHHHHHhhc-C--cEE--EEec----CCCCH-HH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-G----RKTNFNQILEYVKDIRDM-G--MEV--CCTL----GMLEK-HQ 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~-g----e~~~~~~l~~~i~~ik~~-g--~~i--~~t~----g~l~~-e~ 186 (386)
.+.+++...+..+...|++.|....|+.+.. | .|..+++-.++++.+++. | +.+ ...+ ..-+. ..
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHH
Confidence 4778999999999999999998777665543 3 122255667777777654 3 333 2322 11222 23
Q ss_pred HHHH---HHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec
Q 016605 187 AIEL---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 243 (386)
Q Consensus 187 l~~L---k~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl 243 (386)
++.| .++|.+.+--- .-.+.+...+-++.++++|+. +-++.|+
T Consensus 163 ~~~Lk~Kv~aGAdf~iTQ------------~ffD~~~~~~f~~~~r~~Gi~--vPIi~GI 208 (310)
T 3apt_A 163 LRHFKAKVEAGLDFAITQ------------LFFNNAHYFGFLERARRAGIG--IPILPGI 208 (310)
T ss_dssp HHHHHHHHHHHCSEEEEC------------CCSCHHHHHHHHHHHHHTTCC--SCEECEE
T ss_pred HHHHHHHHHcCCCEEEec------------ccCCHHHHHHHHHHHHHcCCC--CeEEEEe
Confidence 4444 35787754320 012455555666677777864 3344444
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=81.90 E-value=26 Score=30.63 Aligned_cols=176 Identities=16% Similarity=0.125 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe----cCCCC-HHH---HHHHHH
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE-KHQ---AIELKK 192 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t----~g~l~-~e~---l~~Lk~ 192 (386)
..+.++|.+.++++.+.|+..||+. |.+.+... .++..++.+++- .|..+ +.. .+...+
T Consensus 25 ~~t~~~i~~lc~eA~~~~~~aVcV~---------p~~v~~a~----~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Ai~ 91 (231)
T 3ndo_A 25 EATPSDVTALVDEAADLGVFAVCVS---------PPLVSVAA----GVAPSGLAIAAVAGFPSGKHVPGIKATEAELAVA 91 (231)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEC---------GGGHHHHH----HHCCTTCEEEEEESTTTCCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEC---------HHHHHHHH----HhcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 3689999999999999999999883 33333332 344456665443 23322 222 333345
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeEeEEe--ecC---CCHHHHHHHHHHHhcCCCCCC
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGII--GLG---EAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~--Gi~v~~~~i~--Glg---et~ed~~~~l~~l~~l~~~~~ 265 (386)
.|.|.|.+-+.-. .+ ..++|+.+.+-|..++++ |..+ -+|+ |.- .|++++....+...+.| .+
T Consensus 92 ~GAdEIDmVinig-----~l-k~g~~~~v~~ei~~v~~a~~~~~l--KvIiEt~~L~~~~t~eei~~a~~ia~~aG--AD 161 (231)
T 3ndo_A 92 AGATEIDMVIDVG-----AA-LAGDLDAVSADITAVRKAVRAATL--KVIVESAALLEFSGEPLLADVCRVARDAG--AD 161 (231)
T ss_dssp TTCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHTTTSEE--EEECCHHHHHHHTCHHHHHHHHHHHHHTT--CS
T ss_pred cCCCEEEEEeehH-----hh-hcccHHHHHHHHHHHHHHccCCce--EEEEECcccCCCCCHHHHHHHHHHHHHHC--cC
Confidence 6999887644332 11 135788888877777765 4433 3444 222 27889999999999997 77
Q ss_pred eEeeee-eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 266 SVPINA-LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 266 ~v~~~~-f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
+|.... |.|. ...+.++..-+... .-++.-+..++|--++ +.....+.+||+++
T Consensus 162 fVKTSTGf~~~--------~gAt~edv~lm~~~---v~~~v~VKaaGGIrt~--~~a~~~i~aGa~Ri 216 (231)
T 3ndo_A 162 FVKTSTGFHPS--------GGASVQAVEIMART---VGERLGVKASGGIRTA--EQAAAMLDAGATRL 216 (231)
T ss_dssp EEECCCSCCTT--------CSCCHHHHHHHHHH---HTTTSEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred EEEcCCCCCCC--------CCCCHHHHHHHHHH---hCCCceEEEeCCCCCH--HHHHHHHHhcchhc
Confidence 776643 3321 22344443322222 2244455556553322 33456678999977
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=81.76 E-value=26 Score=30.52 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEec----CCCCH----HHHHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL----GMLEK----HQAIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~----g~l~~----e~l~~Lk~a 193 (386)
.+.++|.+.++++.+.|+..||+. |...+...+.++ . +.+++.. |..+. ...+. .+.
T Consensus 14 ~t~~~i~~l~~~A~~~~~~aVcv~---------p~~v~~a~~~l~---g--v~v~tvigFP~G~~~~~~k~~E~~~-i~~ 78 (226)
T 1vcv_A 14 LTVDEAVAGARKAEELGVAAYCVN---------PIYAPVVRPLLR---K--VKLCVVADFPFGALPTASRIALVSR-LAE 78 (226)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEC---------GGGHHHHGGGCS---S--SEEEEEESTTTCCSCHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEC---------HHHHHHHHHHhC---C--CeEEEEeCCCCCCCchHHHHHHHHH-HHC
Confidence 689999999999999999999874 333333333322 2 5554332 32222 23455 678
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHhcCCCCCCeEeeee-
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINA- 271 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~- 271 (386)
|.+.|.+-+.-. .+ ..+.|+.+.+-|+.++++--....-+|+-. --+++++....+...+.| .++|..+.
T Consensus 79 GAdEID~Vinig-----~~-~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaG--ADfVKTSTG 150 (226)
T 1vcv_A 79 VADEIDVVAPIG-----LV-KSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAG--AHFIKSSTG 150 (226)
T ss_dssp TCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHT--CSEEECCCS
T ss_pred CCCEEEEecchh-----hh-cCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcC--CCEEEeCCC
Confidence 999887655332 11 245788888888777775211234444434 237889999999999997 77776642
Q ss_pred eeec-CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhc---Ccc
Q 016605 272 LLAV-KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA---GAN 330 (386)
Q Consensus 272 f~P~-~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~---Gan 330 (386)
|.|. ..++.++....+.++..-|....+..-++.-+..++|--+ .+.....+.+ ||+
T Consensus 151 f~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt--~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 151 FAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRT--REQAKAIVDAIGWGED 211 (226)
T ss_dssp CCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCS--HHHHHHHHHHHCSCSC
T ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHHHHCCCC
Confidence 3211 0112222344566665444444444444555555554322 1222334455 776
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=81.58 E-value=27 Score=30.62 Aligned_cols=194 Identities=11% Similarity=0.153 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchH
Q 016605 128 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 206 (386)
Q Consensus 128 ~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~ 206 (386)
++.++.+.+.|++++++.--.....+.+. ..++++.+. +..+++.+--|..+.+.++.+.++|++++.++-..+
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~a~~~~~~----~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~- 108 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTGAKDPSKR----QFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI- 108 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHHHHCGGGC----CHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT-
T ss_pred HHHHHHHHHCCCCEEEEEecCcccccchh----HHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccc-
Confidence 34456677789999887531111112222 335555554 457888888999999999999999999999876554
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcC---CeeeEeEE------eec-C---CCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 207 EFYSKIITTRSYDERLETLKHVREAG---INVCSGGI------IGL-G---EAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 207 ~~~~~i~~~~s~~~~l~~i~~a~~~G---i~v~~~~i------~Gl-g---et~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
.+++-..+. +.+.| +-+..+.. +.. | .+.-++.+.++.+.+++ +..+-++..
T Consensus 109 ---------~~p~li~e~---~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~eil~t~I- 173 (243)
T 4gj1_A 109 ---------KDATLCLEI---LKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKG--LKHILCTDI- 173 (243)
T ss_dssp ---------TCHHHHHHH---HHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTT--CCEEEEEET-
T ss_pred ---------cCCchHHHH---HhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcC--CcEEEeeee-
Confidence 122222222 23344 22333332 111 2 12234566777777775 555544432
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHH
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 353 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i 353 (386)
-..||. ..++.+. + ...+...++..+-.++|--++ .+...+..+++.++.|..+ -....+.+|.++.+
T Consensus 174 d~DGt~----~G~d~~l-~---~~l~~~~~~ipviasGGv~~~---~Dl~~l~~~~~gvivg~Al-~~g~i~l~ea~~~l 241 (243)
T 4gj1_A 174 SKDGTM----QGVNVRL-Y---KLIHEIFPNICIQASGGVASL---KDLENLKGICSGVIVGKAL-LDGVFSVEEGIRCL 241 (243)
T ss_dssp TC---------CCCHHH-H---HHHHHHCTTSEEEEESCCCSH---HHHHHTTTTCSEEEECHHH-HTTSSCHHHHHHHH
T ss_pred cccccc----cCCCHHH-H---HHHHHhcCCCCEEEEcCCCCH---HHHHHHHccCchhehHHHH-HCCCCCHHHHHHHh
Confidence 233553 2234443 2 223334555334445443332 2344456677777667533 34456777776654
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.39 E-value=27 Score=32.09 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=42.3
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCChhhH-----HHHHHHHHHHhhc-CcEE-EEecCCCCHHHHHHHHHhccCeeecc
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDM-GMEV-CCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~ge~~~~-----~~l~~~i~~ik~~-g~~i-~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
.++...+.|+..+.+...+.... .|..+ +++.++++.+++. |+.+ ....|. ...+..|++.|++.+++.
T Consensus 184 ~~~~~~~aGad~i~i~d~~~~~l-sp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~--~~~l~~l~~~g~d~~~~d 259 (338)
T 2eja_A 184 YLKEQIKAGADVVQIFDSWVNNL-SLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGS--SSFIDLAVDYRADALSVD 259 (338)
T ss_dssp HHHHHHHTTCSEEEEEETTGGGS-CHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSH--HHHHHHHTTSCCSEEECC
T ss_pred HHHHHHHhCCCEEEEecCccccC-CHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCc--HHHHHHHHHcCCCEEEeC
Confidence 34445577988776643332222 23222 5566666777765 6664 334554 778999999999988764
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=81.18 E-value=9.9 Score=33.30 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHH
Q 016605 130 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 208 (386)
Q Consensus 130 ~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~ 208 (386)
.++.+.+.|+..|.+.+....-...... ++.++.+++ .++++...-|..+.+.+..+.++|++.+.++ ..+
T Consensus 156 ~~~~~~~~G~~~i~~~~~~~~g~~~g~~----~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vG----sal 227 (253)
T 1thf_D 156 WVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA----SVF 227 (253)
T ss_dssp HHHHHHHTTCSEEEEEETTTTTSCSCCC----HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEES----HHH
T ss_pred HHHHHHHCCCCEEEEEeccCCCCCCCCC----HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHH----HHH
Confidence 3445556898888775422111011112 445555653 4678888888888899999999999998875 112
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCeeeE
Q 016605 209 YSKIITTRSYDERLETLKHVREAGINVCS 237 (386)
Q Consensus 209 ~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~ 237 (386)
+ ....+++ ++++.+++.|+.+..
T Consensus 228 ~---~~~~~~~---~~~~~l~~~g~~~~~ 250 (253)
T 1thf_D 228 H---FREIDVR---ELKEYLKKHGVNVRL 250 (253)
T ss_dssp H---TTCSCHH---HHHHHHHHTTCCCCC
T ss_pred H---cCCCCHH---HHHHHHHHcCCcccc
Confidence 2 1222555 445566788887653
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=80.91 E-value=42 Score=33.31 Aligned_cols=219 Identities=13% Similarity=0.043 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCH-----------HHHHHHHH
Q 016605 125 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK-----------HQAIELKK 192 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~-----------e~l~~Lk~ 192 (386)
.+.++.++.+.+.|++.+++.--.....+ +.......+.++++++ ..+++.+--|..+. +.++.+.+
T Consensus 280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~-~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~ 358 (555)
T 1jvn_A 280 GKPVQLAQKYYQQGADEVTFLNITSFRDC-PLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 358 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CC-CGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccc-cCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHH
Confidence 47788888888899998876421111111 2223345677777764 56777777776554 77999999
Q ss_pred hccCeeecccCchHH---HHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEE-----------------------------
Q 016605 193 AGLTAYNHNLDTSRE---FYSKIITTRSYDERLETLKHVREAGINVCSGGI----------------------------- 240 (386)
Q Consensus 193 aG~~~v~i~le~~~~---~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i----------------------------- 240 (386)
+|++.|.++-....+ .++.=....+.+-+.+..+..-+.-+-+.++.-
T Consensus 359 aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (555)
T 1jvn_A 359 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCW 438 (555)
T ss_dssp HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEE
T ss_pred cCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCccee
Confidence 999999987665522 222111111232222222222111132333321
Q ss_pred ---eecCC---CHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCccc
Q 016605 241 ---IGLGE---AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV 314 (386)
Q Consensus 241 ---~Glge---t~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~ 314 (386)
+-.|- +.-+..+.++.+.++| ++.+-++... ..|+. ..++.+. ++.+. ... +.-+-.++|-.
T Consensus 439 ~~v~~~Gw~~~~~~~~~e~a~~~~~~G--a~~il~t~~~-~dG~~----~G~d~~l-i~~l~---~~~-~iPVIasGGi~ 506 (555)
T 1jvn_A 439 YQCTIKGGRESRDLGVWELTRACEALG--AGEILLNCID-KDGSN----SGYDLEL-IEHVK---DAV-KIPVIASSGAG 506 (555)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTT--CCEEEECCGG-GTTTC----SCCCHHH-HHHHH---HHC-SSCEEECSCCC
T ss_pred EEEEEecCccCCCCCHHHHHHHHHHcC--CCEEEEeCCC-CCCCC----CCCCHHH-HHHHH---HhC-CccEEEECCCC
Confidence 11121 1123567778888886 6666433221 12332 2234333 22222 222 11122233222
Q ss_pred ccChhHHHhhhh-cCccccccCCccccCCCCChhHHHHHHHHcCCC
Q 016605 315 RFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLT 359 (386)
Q Consensus 315 ~~~~~~~~~~l~-~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~ 359 (386)
+ .+.-...+. .||+.++.|. .......++.+.++.+++.|..
T Consensus 507 s--~~d~~~~~~~~G~~gvivg~-a~~~~~~~~~e~~~~l~~~gi~ 549 (555)
T 1jvn_A 507 V--PEHFEEAFLKTRADACLGAG-MFHRGEFTVNDVKEYLLEHGLK 549 (555)
T ss_dssp S--HHHHHHHHHHSCCSEEEESH-HHHTTSCCHHHHHHHHHHTTCC
T ss_pred C--HHHHHHHHHhcCChHHHHHH-HHHcCCCCHHHHHHHHHHCCCc
Confidence 2 222234444 6999998887 3445567899999999999953
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=80.84 E-value=18 Score=31.53 Aligned_cols=92 Identities=22% Similarity=0.262 Sum_probs=55.6
Q ss_pred HHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHH
Q 016605 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFY 209 (386)
Q Consensus 131 ~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~ 209 (386)
++.+.+.|+..|++.+-... |.....+ ++.++++++ .++++...-|..+.+.++.++++|++.+.++= .+
T Consensus 158 ~~~~~~~G~~~i~~~~~~~~--g~~~g~~--~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgs----al- 228 (252)
T 1ka9_F 158 AVKGVELGAGEILLTSMDRD--GTKEGYD--LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAAS----VF- 228 (252)
T ss_dssp HHHHHHHTCCEEEEEETTTT--TTCSCCC--HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESH----HH-
T ss_pred HHHHHHcCCCEEEEecccCC--CCcCCCC--HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHH----HH-
Confidence 34455578888877532211 1111111 455555553 47788888888888999999999999988741 11
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcCCeee
Q 016605 210 SKIITTRSYDERLETLKHVREAGINVC 236 (386)
Q Consensus 210 ~~i~~~~s~~~~l~~i~~a~~~Gi~v~ 236 (386)
+....++.+. .+.+.+.|+.+.
T Consensus 229 --~~~~~~~~~~---~~~l~~~~~~~~ 250 (252)
T 1ka9_F 229 --HFGEIPIPKL---KRYLAEKGVHVR 250 (252)
T ss_dssp --HTTSSCHHHH---HHHHHHTTCCBC
T ss_pred --HcCCCCHHHH---HHHHHHCCCCcC
Confidence 1223366644 455677888764
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=80.36 E-value=25 Score=32.67 Aligned_cols=86 Identities=19% Similarity=0.080 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCeeecccCch-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeeeEeEEeecC--CCHHHHHHHHHH
Q 016605 184 KHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVCSGGIIGLG--EAEEDRVGLLHT 256 (386)
Q Consensus 184 ~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~---~~s~~~~l~~i~~a~~~-Gi~v~~~~i~Glg--et~ed~~~~l~~ 256 (386)
.+.++.+.++|+|.|.++.-.. ......-.+ ..+.+...+.++.+++. ++++.+-+=.|.. .+.++..+.++.
T Consensus 73 ~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~ 152 (350)
T 3b0p_A 73 AEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEA 152 (350)
T ss_dssp HHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHH
Confidence 3445666778999998877554 433322111 13566777777777763 7777665555652 355678888899
Q ss_pred HhcCCCCCCeEeeee
Q 016605 257 LATLPTHPESVPINA 271 (386)
Q Consensus 257 l~~l~~~~~~v~~~~ 271 (386)
+.+.| ++.+.++.
T Consensus 153 l~~aG--~d~I~V~~ 165 (350)
T 3b0p_A 153 MAEAG--VKVFVVHA 165 (350)
T ss_dssp HHHTT--CCEEEEEC
T ss_pred HHHcC--CCEEEEec
Confidence 99887 77777754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 386 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 1e-84 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 258 bits (659), Expect = 1e-84
Identities = 176/312 (56%), Positives = 224/312 (71%), Gaps = 2/312 (0%)
Query: 50 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQS 109
R W+ + +++ P+LDLLF QVHR + R+VQ TLLSIKTG C EDC YCPQS
Sbjct: 1 RPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQS 60
Query: 110 SRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 169
SRY TG++ ++LM + V+++A+KAK AGSTRFCMGAAW++ + + + + V+ ++
Sbjct: 61 SRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP--HERDMPYLEQMVQGVK 118
Query: 170 DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 229
MG+E C TLG L + QA L AGL YNHNLDTS EFY IITTR+Y ERL+TL+ VR
Sbjct: 119 AMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVR 178
Query: 230 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 289
+AGI VCSGGI+GLGE +DR GLL LA LPT PESVPIN L+ VKGTPL D V+ +
Sbjct: 179 DAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAF 238
Query: 290 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 349
+ IR IA ARI+MP + VRLSAGR + + QA+CF+AGANSIF G KLLTTPN + D D
Sbjct: 239 DFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKD 298
Query: 350 QLMFKVLGLTPK 361
+F+ LGL P+
Sbjct: 299 LQLFRKLGLNPQ 310
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.81 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.71 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 97.41 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.13 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.53 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 95.37 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 95.23 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 95.03 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 94.6 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 94.1 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.07 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 92.12 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 91.0 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 90.59 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 90.21 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 90.18 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 89.2 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 84.52 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 84.45 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 82.94 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 82.36 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 82.12 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 81.85 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 81.01 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 80.93 | |
| d1sr9a2 | 310 | 2-isopropylmalate synthase LeuA, catalytic domain | 80.87 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 80.83 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 80.43 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-51 Score=385.25 Aligned_cols=310 Identities=56% Similarity=0.964 Sum_probs=281.9
Q ss_pred CCCCHHHHHHhcCCChHHHHHHHHHHHHhhcCCCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHH
Q 016605 51 HDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQA 130 (386)
Q Consensus 51 ~~ls~ee~~~l~~~~~~~~l~~aa~~~r~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~ 130 (386)
++||+||++.||+.|+.+++..|++++|+++.++.++....+++.|++|+++|.||+++..++.....++.+++|++++.
T Consensus 2 ~r~s~ee~~~L~~~~~~dL~~~A~~v~r~~~~~~~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~ 81 (312)
T d1r30a_ 2 PRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 81 (312)
T ss_dssp CCCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHcCCHHHHHHHHHHHHHHHcCCCEEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHH
Confidence 68999999999999999999999998888876677777766655599999999999998655444444566899999999
Q ss_pred HHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeecccCchHHHHh
Q 016605 131 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYS 210 (386)
Q Consensus 131 ~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~~~~~~ 210 (386)
++.+.+.|.+.+++++|..+.. +...+.+.++++.+++..+.++++.+.++++.++.|+++|++.+.+++|+.++.+.
T Consensus 82 ~~~~~~~G~~~~~~~~g~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i~~~iEs~~~~~~ 159 (312)
T d1r30a_ 82 ARKAKAAGSTRFCMGAAWKNPH--ERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYG 159 (312)
T ss_dssp HHHHHHTTCSEEEEEECCSSCC--TTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHH
T ss_pred HHHHHHcCCEEEEEccCCCCCc--hhhHHHHHHHHHhcccccceeeeccccchHHHHHHhhcccceeEecccchhhhhhc
Confidence 9999999999999988765432 35678899999999988888889999999999999999999999999999977888
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHH
Q 016605 211 KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE 290 (386)
Q Consensus 211 ~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e 290 (386)
.+++++++++++++++.++++|+.+++++|+|+||+.+|+.+++..+++++.++..++++.|.|.|||++++.++++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e 239 (312)
T d1r30a_ 160 NIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFD 239 (312)
T ss_dssp HHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHH
Confidence 88889999999999999999999999999999999999999999999999866788999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcCCCcCC
Q 016605 291 MIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 362 (386)
Q Consensus 291 ~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p~~ 362 (386)
+++++|++|+++|+..++++++|.+++.+.+..+|.+|||+++.|+.++|+.+++++++++||+++||+|.+
T Consensus 240 ~l~~iA~~Rl~lp~~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~~~~~~t~~~~~~~~~~~~i~~~G~~P~~ 311 (312)
T d1r30a_ 240 FIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQ 311 (312)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHHHHhCCCcceEEEechhhcCHHHHHHHHhcCCcEEEecCccccCCCCCHHHHHHHHHHcCCCcCC
Confidence 999999999999999999999999999999999999999999999889999999999999999999999976
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=7.8e-20 Score=178.44 Aligned_cols=208 Identities=14% Similarity=0.173 Sum_probs=154.3
Q ss_pred eeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHH----cCCcEEEEecccCCCCCChhhHHHHHHHHH
Q 016605 91 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 166 (386)
Q Consensus 91 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~----~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~ 166 (386)
.+++ ++|+..|.||.+............ .=.+.+.++++...+ ..+..++++|| +|+...+..+..+++.++
T Consensus 53 YiHi--PFC~~~C~yC~~~~~~~~~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGG-TPt~L~~~~l~~ll~~l~ 128 (441)
T d1olta_ 53 YVHI--PFCHKLCYFCGCNKIVTRQQHKAD-QYLDALEQEIVHRAPLFAGRHVSQLHWGGG-TPTYLNKAQISRLMKLLR 128 (441)
T ss_dssp EEEE--CEESSCCTTCCSSCEECSCTHHHH-HHHHHHHHHHHHHGGGGTTCCEEEEEEEES-CGGGSCHHHHHHHHHHHH
T ss_pred EEEe--CCCCCCCCCCcCeeecCCCcchHH-HHHHHHHHHHHHhhHhcCCCccceeEecCC-CcCCCCHHHHHHHHHHHh
Confidence 3454 799999999998643211111100 002444444443332 23556667654 555544555555555555
Q ss_pred HHhhc--CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeEeEE
Q 016605 167 DIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGI 240 (386)
Q Consensus 167 ~ik~~--g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~-v~~~~i 240 (386)
..... ..+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.+++.++++.++++|+. +++++|
T Consensus 129 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI 208 (441)
T d1olta_ 129 ENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLI 208 (441)
T ss_dssp HHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred hhccccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhcccceeecccc
Confidence 44322 222 4567888999999999999999999999999 99999999999999999999999999997 999999
Q ss_pred eec-CCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCC-----CCCCCCHHHHHHHHHHHHHhCCC
Q 016605 241 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-----DQKPVEIWEMIRMIATARIVMPK 304 (386)
Q Consensus 241 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~-----~~~~~s~~e~~~~~a~~R~~lp~ 304 (386)
+|+ |||.+++.++++.+.+++ |+++.++.|...|++... ....++.++..+++..+...|..
T Consensus 209 ~GlPgqT~~~~~~tl~~~~~l~--pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~~ 276 (441)
T d1olta_ 209 YGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQ 276 (441)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHhhC--CCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 999 999999999999999996 999999999988877543 23457888888888877766643
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.71 E-value=4.8e-16 Score=145.13 Aligned_cols=203 Identities=22% Similarity=0.301 Sum_probs=148.7
Q ss_pred CCeeEEEEeeeecCCCCCcCCCCCCCCCCCC---CCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHH
Q 016605 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYD---TGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 159 (386)
Q Consensus 83 g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~---~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~ 159 (386)
++.+.. ..|++ |+.||++|.||....... ........|+.|++.+.++++.+.|+..+.+.| |||..++
T Consensus 8 ~r~~~~-l~iei-T~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~G------GEp~l~~ 79 (327)
T d1tv8a_ 8 GRPIRD-LRLSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG------GEPLMRR 79 (327)
T ss_dssp SCBCCE-EEEEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES------SCGGGST
T ss_pred CCccCc-EEEEe-ccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCC------Ccccccc
Confidence 444432 23677 999999999997543211 111223458999999999999999999887776 4677778
Q ss_pred HHHHHHHHHhhc-CcE--EEEecCCCCHHHHHHHHHhccCeeecccCch-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCe
Q 016605 160 QILEYVKDIRDM-GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGIN 234 (386)
Q Consensus 160 ~l~~~i~~ik~~-g~~--i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~-~~~~~~i~~-~~s~~~~l~~i~~a~~~Gi~ 234 (386)
++.+++..+.+. +.. +.+|++.++++.++.|+++|++.+.+++++. ++.++.+++ +..++..+++++.+.++|+.
T Consensus 80 ~~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~~ 159 (327)
T d1tv8a_ 80 DLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLN 159 (327)
T ss_dssp THHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhhhccccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCCC
Confidence 888888877644 332 3455667899999999999999999999999 899999876 45899999999999999999
Q ss_pred eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecC-CCCCCCCCCCCHHHHHHHHH
Q 016605 235 VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK-GTPLQDQKPVEIWEMIRMIA 296 (386)
Q Consensus 235 v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~-gT~l~~~~~~s~~e~~~~~a 296 (386)
+.+.+++..+.+.+++.+.++++..++ .+ +.+..+.+.. +.........+.++......
T Consensus 160 ~~~~~~v~~~~n~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (327)
T d1tv8a_ 160 VKVNVVIQKGINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE 219 (327)
T ss_dssp EEEEEEECTTTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHH
T ss_pred cceeEEEecCccccccHHHHHHHHhhc--cc-cceeeeecccCcccccccccccHHHHHHHHH
Confidence 888887755888899999999999885 33 3343443333 23222333455566544443
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=97.41 E-value=0.0063 Score=53.64 Aligned_cols=215 Identities=11% Similarity=0.096 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCC---ChhhHHHHHHHHHHHh----hcCcEEEEecCCCCHHHHHHHHHh
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG---RKTNFNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKA 193 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g---e~~~~~~l~~~i~~ik----~~g~~i~~t~g~l~~e~l~~Lk~a 193 (386)
.++.++.++.++.+.+.|++.+-++.+..+..- .........+.++.+. ...+......+....+.+....+.
T Consensus 25 ~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 104 (289)
T d1nvma2 25 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQA 104 (289)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHh
Confidence 489999999999999999998877532211100 0001112223333333 223334455677778888888888
Q ss_pred ccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeee
Q 016605 194 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 273 (386)
Q Consensus 194 G~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~ 273 (386)
|++.+.+.... ...+...+.++.+++.|+.+...++....-+.+.+.+.++.+.+++ ++.+.+
T Consensus 105 ~~~~~r~~~~~-----------~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~I~l---- 167 (289)
T d1nvma2 105 GARVVRVATHC-----------TEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYM---- 167 (289)
T ss_dssp TCCEEEEEEET-----------TCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEE----
T ss_pred cccceEEEeeh-----------hhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhcccc--ceeeee----
Confidence 98877653211 1233445677889999999887777655677888999999999986 555433
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCccee--ecCcccccChhHHHhhhhcCcccc---ccCCccccCCCCChh
Q 016605 274 AVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVR--LSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFD 347 (386)
Q Consensus 274 P~~gT~l~~~~~~s~~e~~~~~a~~R~~l-p~~~i~--i~~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~ 347 (386)
..|- ...++.++.+++...+..+ |+..+. ... -.++.-.....++.+||+.+ +.|=. ..+++...+
T Consensus 168 --~DT~----G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn-~~g~a~an~l~A~~~G~~~id~si~GlG-~~~GN~~tE 239 (289)
T d1nvma2 168 --ADSG----GAMSMNDIRDRMRAFKAVLKPETQVGMHAHH-NLSLGVANSIVAVEEGCDRVDASLAGMG-AGAGNAPLE 239 (289)
T ss_dssp --ECTT----CCCCHHHHHHHHHHHHHHSCTTSEEEEECBC-TTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBHH
T ss_pred --cchh----hcccchhHHHHHHHHHHHhcccccceeeech-HHHHHHHHHHHHHHhCCcEeeccccccC-CCCCCccHH
Confidence 2332 2246888889998888877 443333 221 11222233467889999987 22210 124667889
Q ss_pred HHHHHHHHcCCCc
Q 016605 348 ADQLMFKVLGLTP 360 (386)
Q Consensus 348 ~~~~~i~~~G~~p 360 (386)
+.+.++++.|+..
T Consensus 240 ~lv~~l~~~g~~~ 252 (289)
T d1nvma2 240 VFIAVAERLGWNH 252 (289)
T ss_dssp HHHHHHHHHTCBC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999853
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.13 E-value=0.036 Score=47.01 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhh---cCcEEEEecCCCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRD---MGMEVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~---~g~~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
+...+.+.++.+.+.|++.+++ ...+...-. -..-. +.++.+++ ..++++.-. .-..+.++.+.++|++.+
T Consensus 21 d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn-~t~~~---~~v~~i~~~t~~~~dvHLMv-~~P~~~i~~~~~~g~~~i 95 (230)
T d1rpxa_ 21 NFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN-ITIGP---LVVDSLRPITDLPLDVHLMI-VEPDQRVPDFIKAGADIV 95 (230)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC-BCCCH---HHHHHHGGGCCSCEEEEEES-SSHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCccCCcCCc-cccCh---HHHhhhhhccCceeeeeeee-cchhhhHHHHhhccccee
Confidence 4456677777777889888776 232222100 01112 33444443 233433221 124688999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..|+. ...++ .+.++.++++|..++. .+......+.+...+ .. ++.|-+..-. ||.
T Consensus 96 ~~H~E~~--------~~~~~---~~~i~~ik~~g~k~Gi--alnp~T~~~~l~~~l---~~----vD~VllM~V~--PGf 153 (230)
T d1rpxa_ 96 SVHCEQS--------STIHL---HRTINQIKSLGAKAGV--VLNPGTPLTAIEYVL---DA----VDLVLIMSVN--PGF 153 (230)
T ss_dssp EEECSTT--------TCSCH---HHHHHHHHHTTSEEEE--EECTTCCGGGGTTTT---TT----CSEEEEESSC--TTC
T ss_pred EEecccc--------ccccH---HHHHHHHHHcCCeEEE--EeCCCCCHHHHHHHH---hh----CCEEEEEEec--CCc
Confidence 9988763 11123 3567788889987644 443444444443332 22 5677776654 455
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcC
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G 357 (386)
.-+...+...+.+.++........++..|.+.+| +..+.-.....+|||.++.|..+. . ..++.+.+..++.+.
T Consensus 154 ~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGG---In~~~i~~l~~~Gad~~V~GS~if-~-~~d~~~~i~~lk~~~ 227 (230)
T d1rpxa_ 154 GGQSFIESQVKKISDLRKICAERGLNPWIEVDGG---VGPKNAYKVIEAGANALVAGSAVF-G-APDYAEAIKGIKTSK 227 (230)
T ss_dssp SSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESS---CCTTTHHHHHHHTCCEEEESHHHH-T-SSCHHHHHHHHHTCC
T ss_pred ccchhhhhhHHHHHHHHHHHHhcCCceEEEEECC---cCHHHHHHHHHcCCCEEEEChHHH-C-CCCHHHHHHHHHHhc
Confidence 4333333333443333333333344555666654 233334667789999999886333 2 246778788887765
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.53 E-value=0.047 Score=45.96 Aligned_cols=203 Identities=14% Similarity=0.067 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhc-Cc--EEEEecCCCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM-GM--EVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~--~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
+.-.+.++++.+.+.|++.+++ ...++..-. -..-.. .++.+++. .+ ++..-. .-....++.+.++|.+.+
T Consensus 13 d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn-~t~~~~---~~~~i~~~t~~~~dvHLMv-~~P~~~i~~~~~~g~~~i 87 (221)
T d1tqja_ 13 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN-ITIGPL---IVDAIRPLTKKTLDVHLMI-VEPEKYVEDFAKAGADII 87 (221)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-BCBCHH---HHHHHGGGCCSEEEEEEES-SSGGGTHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccCCccCc-cccCcH---hHHhhhhccCcceeeeEEE-eCHHHHHHHHhhccceEE
Confidence 3445667777777889998876 332222111 111123 44444432 33 332221 123567999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+.+|+. .... ..+.+..+++.|+.++..+- +....+++...+ .. ++.+-+....| |.
T Consensus 88 ~~H~E~~--------~~~~---~~~~~~~i~~~g~~~Gial~--p~T~~~~l~~~l---~~----~d~vlvM~V~p--G~ 145 (221)
T d1tqja_ 88 SVHVEHN--------ASPH---LHRTLCQIRELGKKAGAVLN--PSTPLDFLEYVL---PV----CDLILIMSVNP--GF 145 (221)
T ss_dssp EEECSTT--------TCTT---HHHHHHHHHHTTCEEEEEEC--TTCCGGGGTTTG---GG----CSEEEEESSCC----
T ss_pred EEeeccc--------cChh---hHHHHHHHHHCCCCEEEEec--CCCcHHHHHHHH---hh----hcEEEEEEecC--CC
Confidence 9988763 0112 34666778899987665543 344444444433 33 45666655544 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHHcC
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 357 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G 357 (386)
.-+...+...+.+.++....+...++..|.+.+|- ..+.-.....+|||.++.|..+.. ..++.+.+.-++++.
T Consensus 146 ~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGI---n~~~i~~l~~~Gad~~V~GS~if~--~~d~~~~i~~lr~~~ 219 (221)
T d1tqja_ 146 GGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGL---KPNNTWQVLEAGANAIVAGSAVFN--APNYAEAIAGVRNSK 219 (221)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSC---CTTTTHHHHHHTCCEEEESHHHHT--SSCHHHHHHHHHTCC
T ss_pred CCcccchhhHHHHHHHHhhhhccccceEEEEECCc---CHHHHHHHHHcCCCEEEEChHHhC--CCCHHHHHHHHHhcc
Confidence 32222233345544444445554556556666542 222335667899999998863332 346777777777654
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.37 E-value=0.15 Score=42.61 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhc-CcEEEEec-CCCCHHHHHHHHHhccCeee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTL-GMLEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i~~t~-g~l~~e~l~~Lk~aG~~~v~ 199 (386)
+.-.+.++++.+.+.|++.+++ ...+...-. -.. -.+.++.+++. ...+.++. -.-..+.++.+.++|.+.+.
T Consensus 12 d~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn-~t~---~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~ 87 (220)
T d1h1ya_ 12 DFANLAAEADRMVRLGADWLHMDIMDGHFVPN-LTI---GAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFT 87 (220)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC-BCB---CHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCccccc-ccc---CchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceee
Confidence 3446667777777889998876 332222111 111 22444445532 33322221 12346779999999999999
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
+..|+. ...+ .+.++.+++.|+.++.. +..+...+++...+..+.. ++.+-+....| |..
T Consensus 88 ~H~E~~---------~~~~---~~~i~~i~~~g~~~Gla--l~p~t~~~~~~~~l~~~~~----~d~vlim~v~P--G~~ 147 (220)
T d1h1ya_ 88 FHIEVS---------RDNW---QELIQSIKAKGMRPGVS--LRPGTPVEEVFPLVEAENP----VELVLVMTVEP--GFG 147 (220)
T ss_dssp EEGGGC---------TTTH---HHHHHHHHHTTCEEEEE--ECTTSCGGGGHHHHHSSSC----CSEEEEESSCT--TCS
T ss_pred eccccc---------chhH---HHHHHHHHHcCCCccee--eccccchhHHHHHHhcccc----cceEEEEecCC--CCc
Confidence 988763 1122 35567788999876644 3334455555554433322 45565555443 543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
-+...+ ..+..+..+|...|+..|.+.+| +..+.-.....+|||.++.|..+... .++.+....+++
T Consensus 148 GQ~f~~----~~l~kI~~l~~~~~~~~I~VDGG---In~~~i~~l~~aGad~~V~GS~if~~--~d~~~~i~~lr~ 214 (220)
T d1h1ya_ 148 GQKFMP----EMMEKVRALRKKYPSLDIEVDGG---LGPSTIDVAASAGANCIVAGSSIFGA--AEPGEVISALRK 214 (220)
T ss_dssp SCCCCG----GGHHHHHHHHHHCTTSEEEEESS---CSTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHH
T ss_pred ccccch----hhhHHHHHHHhcCCCceEEEEec---CCHHHHHHHHHCCCCEEEECHHHHCC--CCHHHHHHHHHH
Confidence 222222 22333455677788876777664 22333456778999999988643322 345555554443
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.23 E-value=0.059 Score=45.21 Aligned_cols=199 Identities=13% Similarity=0.098 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhc-Cc--EEEEecCCCCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM-GM--EVCCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~--~i~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
+...+.++++.+.+.|++.+++ ...++..-.-.... +.++.+++. .+ ++..-. .-..+.++.+.++|++.+
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~----~~i~~i~~~t~~~~dvHLMv-~~P~~~i~~~~~~ga~~i 86 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHIDIMDGQFVPNISFGA----DVVASMRKHSKLVFDCHLMV-VDPERYVEAFAQAGADIM 86 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCH----HHHHHHHTTCCSEEEEEEES-SSGGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCH----HHHHHHHhcCCCceEeEEEe-cCHHHHHHHHHHcCCcEE
Confidence 3445566677777889998877 44333211111122 234444432 33 332221 123558999999999999
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..|+.+ +. .+.++.+++.|+.++..+- .....+++... +.. ++.+-+.... ||.
T Consensus 87 ~~H~E~~~----------~~---~~~i~~i~~~g~~~Gial~--p~T~~~~~~~~---l~~----id~vliM~V~--pG~ 142 (217)
T d2flia1 87 TIHTESTR----------HI---HGALQKIKAAGMKAGVVIN--PGTPATALEPL---LDL----VDQVLIMTVN--PGF 142 (217)
T ss_dssp EEEGGGCS----------CH---HHHHHHHHHTTSEEEEEEC--TTSCGGGGGGG---TTT----CSEEEEESSC--TTC
T ss_pred Eecccccc----------CH---HHHHHHHHhcCCeEEEEec--CCcchhHHHhH---Hhh----cCEEEEEEEc--Ccc
Confidence 99887741 22 3567888999987654333 34444444332 222 4566666654 454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
.-+...+...+...++........++..+.+.+|- ..+.-.....+|||.++.|..+. . ..++.+.++.+++
T Consensus 143 ~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGI---n~~~i~~l~~aGad~~V~Gsaif-~-~~d~~~~i~~lr~ 214 (217)
T d2flia1 143 GGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV---DNKTIRACYEAGANVFVAGSYLF-K-ASDLVSQVQTLRT 214 (217)
T ss_dssp SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSC---CTTTHHHHHHHTCCEEEESHHHH-T-SSCHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCC---CHHHHHHHHHCCCCEEEEchHHh-C-CCCHHHHHHHHHH
Confidence 32222233333433333333333344445556542 22334667789999999886333 2 2356666655554
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=95.03 E-value=0.18 Score=42.65 Aligned_cols=148 Identities=14% Similarity=0.060 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCC-ChhhHHHHHHHHHHHhhcCcEEEE--ecCCC-----CHHHHHHHHHh
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKDIRDMGMEVCC--TLGML-----EKHQAIELKKA 193 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~g-e~~~~~~l~~~i~~ik~~g~~i~~--t~g~l-----~~e~l~~Lk~a 193 (386)
.+.++..+.++.+.+.|.++|+..- ..+.+ .....+.+.++++.+++.|+++.+ ++..+ +.+.+..+++.
T Consensus 14 ~~~e~~~~yi~~a~~~Gf~~iFTSL--~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~l 91 (244)
T d1x7fa2 14 STKEKDMAYISAAARHGFSRIFTCL--LSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAEL 91 (244)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEE--CCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecC--ccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHHHHHHHHC
Confidence 4678899999999999998876421 11112 224457788889999999999644 44443 23457888999
Q ss_pred ccCeeecc--cCchHHHHhhhCCCCCHHHHHHHHHHHH-HcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCC-CCeEee
Q 016605 194 GLTAYNHN--LDTSREFYSKIITTRSYDERLETLKHVR-EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH-PESVPI 269 (386)
Q Consensus 194 G~~~v~i~--le~~~~~~~~i~~~~s~~~~l~~i~~a~-~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~-~~~v~~ 269 (386)
|++.+-+. ++.. + ..+..+ ..|+++..+.-. .+ +++.++ ...+.+ ...+..
T Consensus 92 Gi~glRlD~Gf~~~--------------e---~a~ms~n~~~l~I~LNaSt---~t-~~l~~l----~~~~~n~~~l~ac 146 (244)
T d1x7fa2 92 GADGIRLDVGFDGL--------------T---EAKMTNNPYGLKIELNVSN---DI-AYLENI----LSHQANKSALIGC 146 (244)
T ss_dssp TCSEEEESSCCSSH--------------H---HHHHTTCTTCCEEEEETTS---CS-SHHHHH----TTSSCCGGGEEEE
T ss_pred CCCEEEEcCCCChH--------------H---HHHHhcCCcCCEEEEECCc---CH-HHHHHH----HHcCCChhheEEe
Confidence 99887763 2221 1 111111 236665554321 22 233333 233222 234667
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 016605 270 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVM 302 (386)
Q Consensus 270 ~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~l 302 (386)
+.|.|.|.|-+ +.+-+.+.-+..+.+-
T Consensus 147 HNFYPr~~TGL------s~~~f~~~n~~~k~~g 173 (244)
T d1x7fa2 147 HNFYPQKFTGL------PYDYFIRCSERFKKHG 173 (244)
T ss_dssp CCCBCSTTCSB------CHHHHHHHHHHHHHTT
T ss_pred eccCCCCCCCC------CHHHHHHHHHHHHHcC
Confidence 88888887764 5666666666666543
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=94.60 E-value=0.49 Score=41.07 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCC-----CCCChhhHHHHHHHHHHHhhcCcEEEEec----CC--CCHH----H
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCTL----GM--LEKH----Q 186 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~-----~~ge~~~~~~l~~~i~~ik~~g~~i~~t~----g~--l~~e----~ 186 (386)
++.++.++.++.+.+.|++.+-++++..+ ..++ ..++.+.......+...+...... +. .... .
T Consensus 30 ~~~~~ki~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (303)
T d1rqba2 30 MAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE-DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRF 108 (303)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCC-CHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcChHHHHHHhcC-chHHHHHHHHhhhhhHHHHHHhcccccccccccchhhhHHH
Confidence 68888888999999999999987543211 0000 111222222222222222222211 00 1112 2
Q ss_pred HHHHHHhccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec--CCCHHHHHHHHHHHhcCCCCC
Q 016605 187 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 264 (386)
Q Consensus 187 l~~Lk~aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 264 (386)
+......+.+.+... ......+....+++.+++.|..+...+.... ..+.+.+.+.+..+.+.| +
T Consensus 109 ~~~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~ 175 (303)
T d1rqba2 109 VDKSAENGMDVFRVF-----------DAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG--A 175 (303)
T ss_dssp HHHHHHTTCCEEEEC-----------CTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHhhhhHHhhh-----------hhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHhcC--C
Confidence 222233343333221 1123567777888999999988766555433 357888999999999987 6
Q ss_pred CeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCcceeec-CcccccChhHHHhhhhcCcccc---ccCCccc
Q 016605 265 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLS-AGRVRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 265 ~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~l-p~~~i~i~-~g~~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
+.+.+- .|- ...++.++.+++...+..+ |+..+.+- ..-.++.-.....++.+||..+ +.|-. .
T Consensus 176 ~~i~l~------DT~----G~~~P~~v~~li~~l~~~~~~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~id~ti~GlG-~ 244 (303)
T d1rqba2 176 DSIALK------DMA----ALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMS-L 244 (303)
T ss_dssp SEEEEE------ETT----CCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGC-S
T ss_pred cEEeec------Ccc----chhhhHHHHHHHHHHHhhcCCcccceeccCchHHHHHHHHHHHHHcCCCEEEECCccCC-C
Confidence 655432 232 2346888888888887766 55434332 1112222233467889999987 22210 1
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 016605 340 TTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~p 360 (386)
.+++.+.++++.+++++|+.+
T Consensus 245 ~~GN~~te~lv~~L~~~g~~t 265 (303)
T d1rqba2 245 GPGHNPTESVAEMLEGTGYTT 265 (303)
T ss_dssp TTSBCBHHHHHHHTTTSSEEC
T ss_pred CCCCccHHHHHHHHHhcCCCC
Confidence 246689999999999999754
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=94.10 E-value=1.3 Score=37.61 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh----hhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~----~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
.++++.++.++++.+.|++-+-+++-.+-++..+ ..++++...++.+++.++.+ +..+...+.++...++|++.
T Consensus 23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~i--SIDT~~~eVa~~al~~Ga~i 100 (264)
T d1ad1a_ 23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKI--SVDTFRSEVAEACLKLGVDI 100 (264)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEE--EEECSCHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCccc--chhhhhHHHHHHHHhcCCcE
Confidence 6899999999999999998888876444343332 44567778888777665544 45567899999999999999
Q ss_pred ee
Q 016605 198 YN 199 (386)
Q Consensus 198 v~ 199 (386)
|+
T Consensus 101 IN 102 (264)
T d1ad1a_ 101 IN 102 (264)
T ss_dssp EE
T ss_pred ee
Confidence 88
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=94.07 E-value=1.5 Score=38.39 Aligned_cols=218 Identities=12% Similarity=0.037 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCC-----------HHHHHHHH
Q 016605 124 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLE-----------KHQAIELK 191 (386)
Q Consensus 124 ~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~-----------~e~l~~Lk 191 (386)
.-+.++.++...+.|+++++++--.....+. .....++++|+.+. +..+++.+--|..+ .|.+++|.
T Consensus 47 iGdP~~~a~~~~~~gaDeL~ivDidas~~~~-~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll 125 (323)
T d1jvna1 47 LGKPVQLAQKYYQQGADEVTFLNITSFRDCP-LKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF 125 (323)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEEC---CCC-GGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEEECcCCCCCc-CCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence 3466788888889999999875321111121 22345778888875 56788877777654 57899999
Q ss_pred HhccCeeecccCch--HHHHhhhCCC-CCHHHHHHHHHHHHHcC---CeeeEeEEeec----------------------
Q 016605 192 KAGLTAYNHNLDTS--REFYSKIITT-RSYDERLETLKHVREAG---INVCSGGIIGL---------------------- 243 (386)
Q Consensus 192 ~aG~~~v~i~le~~--~~~~~~i~~~-~s~~~~l~~i~~a~~~G---i~v~~~~i~Gl---------------------- 243 (386)
++|+++|.++-.++ ++.+..+... .++.-+-+. +...| +-+..++.-+.
T Consensus 126 ~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i---~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (323)
T d1jvna1 126 RSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETI---SKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGE 202 (323)
T ss_dssp HHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHH---HHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCC
T ss_pred HcCCCeEEechHHhhChHHHHHHHhhcccchhHHHH---HHHhCCceEEEEEEEEeccccccccccccccccccccCCCc
Confidence 99999999987666 5666655432 233333333 33445 43444443221
Q ss_pred ----------C---CCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeec
Q 016605 244 ----------G---EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 310 (386)
Q Consensus 244 ----------g---et~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~ 310 (386)
| .+.-++.+.+..+.++| +-.+-++.. -..||. ..++.+-+. ..+...+- .+-++
T Consensus 203 ~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G--~GEIlltdI-drDGt~----~G~D~el~~----~i~~~~~i-PiIas 270 (323)
T d1jvna1 203 KYCWYQCTIKGGRESRDLGVWELTRACEALG--AGEILLNCI-DKDGSN----SGYDLELIE----HVKDAVKI-PVIAS 270 (323)
T ss_dssp CEEEEEEEETTTTEEEEEEHHHHHHHHHHTT--CCEEEECCG-GGTTTC----SCCCHHHHH----HHHHHCSS-CEEEC
T ss_pred cceeEEEEEcCCeEecCchHHHHhhhhhccC--cceeEEEee-cccccc----cccchhHHH----HHHHhCCC-CEEEE
Confidence 1 12235788888888886 556555443 234553 223444322 22333321 23345
Q ss_pred CcccccChhHHHhhh-hcCccccccCCccccCCCCChhHHHHHHHHcCCCc
Q 016605 311 AGRVRFSMPEQALCF-LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 311 ~g~~~~~~~~~~~~l-~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~G~~p 360 (386)
+|--++. +. ..++ ..|++.+..|. ...-...++.+....+.+.|+..
T Consensus 271 GGi~s~~-di-~~ll~~~~v~gv~~gs-~~~~~~~si~elK~~L~~~~i~v 318 (323)
T d1jvna1 271 SGAGVPE-HF-EEAFLKTRADACLGAG-MFHRGEFTVNDVKEYLLEHGLKV 318 (323)
T ss_dssp SCCCSHH-HH-HHHHHHSCCSEEEESH-HHHTTSCCHHHHHHHHHHTTCCC
T ss_pred CCCCCHH-HH-HHHHHhCCCeEEEEhh-HHHcCCCCHHHHHHHHHHCCCcc
Confidence 5433332 22 2234 35788887776 44455678999999999999765
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.12 E-value=0.42 Score=39.81 Aligned_cols=200 Identities=12% Similarity=0.112 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE-ecccCCCCCChhhHHHHHHHHHHHhhc--CcEEEEecCC-CCHHHHHHHHHhccCee
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGM-LEKHQAIELKKAGLTAY 198 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l-~~g~~~~~ge~~~~~~l~~~i~~ik~~--g~~i~~t~g~-l~~e~l~~Lk~aG~~~v 198 (386)
+.-.+.++++.+.+.|++.+++ ...++..-. ..+ =.+.++.+++. .+++.++.=. -....++.+.++|.+.+
T Consensus 13 d~~~l~~~i~~l~~~~~d~iHiDimDG~Fvpn--~t~--g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i 88 (221)
T d1tqxa_ 13 NISKLAEETQRMESLGAEWIHLDVMDMHFVPN--LSF--GPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTF 88 (221)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC--BCC--CHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccCcCcCc--ccc--ChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeE
Confidence 3345566677777788988776 222222100 111 11234444432 2332222111 12345667778888776
Q ss_pred ecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCC
Q 016605 199 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 278 (386)
Q Consensus 199 ~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT 278 (386)
.+..+. .+..+..+.++.+++.|+.++..+-. ....+.+... +... .++.+-+....| |.
T Consensus 89 ~~~~~~-----------~~~~~~~~~i~~i~~~g~~~Gial~p--~t~~~~~~~~---l~~~--~~d~vlim~V~p--G~ 148 (221)
T d1tqxa_ 89 HFEALN-----------EDTERCIQLAKEIRDNNLWCGISIKP--KTDVQKLVPI---LDTN--LINTVLVMTVEP--GF 148 (221)
T ss_dssp EGGGGT-----------TCHHHHHHHHHHHHTTTCEEEEEECT--TSCGGGGHHH---HTTT--CCSEEEEESSCT--TC
T ss_pred Eeehhc-----------cccchhhHHHHHHHhcCCeEEEeecc--ccccccchhh---cccc--cccEEEEEeecc--cc
Confidence 653322 24556677888999999876655443 4444444443 3211 145666655544 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHHHHHH
Q 016605 279 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 355 (386)
Q Consensus 279 ~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 355 (386)
.-+...+ ..++.+..+|...|+..|.+.+| +..+.-.....+|||.++.|..+.. ..++.+.++.+++
T Consensus 149 ~GQ~f~~----~~l~KI~~lr~~~~~~~I~VDGG---In~~~i~~l~~aGad~iV~GS~if~--~~d~~~~i~~Lr~ 216 (221)
T d1tqxa_ 149 GGQSFMH----DMMGKVSFLRKKYKNLNIQVDGG---LNIETTEISASHGANIIVAGTSIFN--AEDPKYVIDTMRV 216 (221)
T ss_dssp SSCCCCG----GGHHHHHHHHHHCTTCEEEEESS---CCHHHHHHHHHHTCCEEEESHHHHT--CSSHHHHHHHHHH
T ss_pred cccccCc----chhHHHHHHHHhcCCcceEEEcc---cCHHhHHHHHHcCCCEEEEChHHHC--CCCHHHHHHHHHH
Confidence 3222111 23444555677888866666654 3344456677899999998863332 2355555555543
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.43 Score=40.12 Aligned_cols=131 Identities=11% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEe----------cccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhc
Q 016605 125 DAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 194 (386)
Q Consensus 125 eeI~~~~~~~~~~G~~~v~l~----------~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG 194 (386)
+++++.+... -...++++ |||.. ....+.+.++++.+++.|+.++.=.. -+.+.++..++.|
T Consensus 76 ~e~i~ia~~~---kP~qvtLVPe~r~elTTegGld~----~~~~~~L~~~i~~l~~~girvSLFiD-pd~~~i~~a~~lG 147 (242)
T d1m5wa_ 76 EEMLAIAVET---KPHFCCLVPEKRQEVTTEGGLDV----AGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVG 147 (242)
T ss_dssp HHHHHHHHHH---CCSEEEECCCCSSCSSCCSCCCS----GGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTT
T ss_pred hhHHHHHHHh---ccceEEEeecCccccCcCCceee----hhhHHHHHHHHHHHHhcCCeEEEEec-cchhhHHHHhhcC
Confidence 4566665543 35678876 33321 23568899999999999988643222 3689999999999
Q ss_pred cCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeee
Q 016605 195 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 272 (386)
Q Consensus 195 ~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f 272 (386)
+|+|-+--..+.+.+..-.....+++..++.+.+++.|+.|++ |+|-|.+.+.. +..++ .++.+++.-+
T Consensus 148 ad~IElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLn~~Nl~~----i~~ip-~i~EvsIGHa 216 (242)
T d1m5wa_ 148 APFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNA----GHGLTYHNVKA----IAAIP-EMHELNIGHA 216 (242)
T ss_dssp CSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE----ESSCCTTTHHH----HHTCT-TEEEEEECHH
T ss_pred cceeeeecccccccccchhhHHHHHHHHHHHHHHHhcCCcccC----CCCcCccchHH----HhcCC-CCeEEeccHH
Confidence 9998864433211110000011356667788889999999887 67777666543 23454 3455565433
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=4.1 Score=34.70 Aligned_cols=136 Identities=16% Similarity=0.166 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHHHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccC
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 196 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~ 196 (386)
.++++.++.++.+.+.|++-+-++|-.+-++.. ...++++...++.+++ .++. ++..+...+.++..-++|++
T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~~--iSIDT~~~eVa~~al~~Ga~ 112 (282)
T d1ajza_ 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVW--ISVDTSKPEVIRESAKVGAH 112 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCE--EEEECCCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccce--EEEEecChHHHHHHHhcCce
Confidence 688999999999999999888776644444322 2456778888888863 3443 44456678888888889988
Q ss_pred eeec--ccCchHHHHhhh----------C-CC--C---------C-----HHHHHHHHHHHHHcCCe---eeEeEEeecC
Q 016605 197 AYNH--NLDTSREFYSKI----------I-TT--R---------S-----YDERLETLKHVREAGIN---VCSGGIIGLG 244 (386)
Q Consensus 197 ~v~i--~le~~~~~~~~i----------~-~~--~---------s-----~~~~l~~i~~a~~~Gi~---v~~~~i~Glg 244 (386)
.|+- ++.. ++.++.+ + ++ . + .+...+.++.+.++|+. +-.+-=+|+|
T Consensus 113 iINDvsg~~~-~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFg 191 (282)
T d1ajza_ 113 IINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191 (282)
T ss_dssp EECCTTTTCS-TTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred EEechhhccc-chhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcC
Confidence 8872 2211 1122110 0 00 0 1 23334556777788883 4555455567
Q ss_pred CCHHHHHHHHHHHhcC
Q 016605 245 EAEEDRVGLLHTLATL 260 (386)
Q Consensus 245 et~ed~~~~l~~l~~l 260 (386)
-|.++=.++++.+..+
T Consensus 192 K~~~~n~~ll~~l~~~ 207 (282)
T d1ajza_ 192 KNLSHNYSLLARLAEF 207 (282)
T ss_dssp CCHHHHHHHHHTGGGG
T ss_pred CChhhhHHHHhhcchh
Confidence 7777666666555544
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.21 E-value=4 Score=34.56 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCC----hhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCe
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 197 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge----~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~ 197 (386)
.+.+++++.++.+.+.|++-+-++|-.+-++.. ...++++...++.+++.++.+ +..+...+.++..-++|++.
T Consensus 22 ~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~~~~i--SIDT~~~~Va~~al~~Ga~i 99 (270)
T d1eyea_ 22 LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITV--SIDTMRADVARAALQNGAQM 99 (270)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCE--EEECSCHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeecccceee--chHhhhHHHHHHHHhcCCeE
Confidence 689999999999999999888776543333322 244567778888777766654 44567799999999999999
Q ss_pred ee
Q 016605 198 YN 199 (386)
Q Consensus 198 v~ 199 (386)
|+
T Consensus 100 IN 101 (270)
T d1eyea_ 100 VN 101 (270)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=90.18 E-value=3.1 Score=35.39 Aligned_cols=160 Identities=14% Similarity=0.233 Sum_probs=92.4
Q ss_pred CCeeEEEEeeeecCCCCCcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCCh----hhH
Q 016605 83 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNF 158 (386)
Q Consensus 83 g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~----~~~ 158 (386)
..+..+.+++|+ |+- +|+. + ....+++.+++.++.+.+.|++-+-+++-.+-++.++ ...
T Consensus 16 ~~~~~iMGIlNi-TpD--------SFsd----g---g~~~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~ 79 (273)
T d1tx2a_ 16 NEKTLIMGILNV-TPD--------SFSD----G---GSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEI 79 (273)
T ss_dssp SSSCEEEEECCC-CCC--------TTCS----S---CBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHH
T ss_pred CCCceEEEEEeC-CCC--------CCCC----C---CcCCCHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHH
Confidence 344566788887 543 3331 1 1225789999999999999998887765433333222 344
Q ss_pred HHHHHHHHHHhh-cCcEEEEecCCCCHHHHHHHHHhccCeee-c-ccCc--h-HHHHhhhC-------C-CC-C------
Q 016605 159 NQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN-H-NLDT--S-REFYSKII-------T-TR-S------ 217 (386)
Q Consensus 159 ~~l~~~i~~ik~-~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~-i-~le~--~-~~~~~~i~-------~-~~-s------ 217 (386)
+.+...++.+++ .++.+ +..+...+.+++..++|++.|+ + +... . .++..... . +. .
T Consensus 80 ~rl~p~i~~~~~~~~~~i--SIDT~~~~Va~~al~~G~~iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~ 157 (273)
T d1tx2a_ 80 KRVVPMIQAVSKEVKLPI--SIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMA 157 (273)
T ss_dssp HHHHHHHHHHHHHSCSCE--EEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHH
T ss_pred HhhchhHHhhhccceEEE--ehHHhhHHHHHHHHHcCCeEEeccccccchhHHHHHHHhhcccccccccccccccccccc
Confidence 566767766654 34443 4556789999999999999888 3 2322 1 22222211 0 10 0
Q ss_pred --HHHHHHHHHHHHHcCCe---eeEeEEeecCCCHHHHHHHHHHHhcC
Q 016605 218 --YDERLETLKHVREAGIN---VCSGGIIGLGEAEEDRVGLLHTLATL 260 (386)
Q Consensus 218 --~~~~l~~i~~a~~~Gi~---v~~~~i~Glget~ed~~~~l~~l~~l 260 (386)
.....+.++.+.++|+. +-.+-=+|+|-+.++-.++++.+..+
T Consensus 158 ~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~~ll~~i~~l 205 (273)
T d1tx2a_ 158 DMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQL 205 (273)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGG
T ss_pred hhhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHHHHHhhhccc
Confidence 22334566777778884 33333234466777777666666554
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.20 E-value=4.2 Score=33.98 Aligned_cols=202 Identities=17% Similarity=0.121 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeecccCch
Q 016605 127 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 205 (386)
Q Consensus 127 I~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~le~~ 205 (386)
.++.++.+.+.|++++++..-.... ...+...++++.+. ...+++.+-.|..+.+.++.+.++|++++.++-..+
T Consensus 34 P~~~a~~~~~~gadei~ivDl~~~~----~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~ 109 (252)
T d1h5ya_ 34 PVEMAVRYEEEGADEIAILDITAAP----EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV 109 (252)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT----TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEeccccc----cccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEeccccc
Confidence 4556677778999999876422111 22344556666665 457788888999999999999999999999864333
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCC---eeeEeEE--------eecCC---CHHHHHHHHHHHhcCCCCCCeEeeee
Q 016605 206 REFYSKIITTRSYDERLETLKHVREAGI---NVCSGGI--------IGLGE---AEEDRVGLLHTLATLPTHPESVPINA 271 (386)
Q Consensus 206 ~~~~~~i~~~~s~~~~l~~i~~a~~~Gi---~v~~~~i--------~Glge---t~ed~~~~l~~l~~l~~~~~~v~~~~ 271 (386)
. +++...+. +...|- -+..++- +-.|. +.-+..+.++.+.+++ +..+-++.
T Consensus 110 ~----------~~~~~~~~---~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~td 174 (252)
T d1h5ya_ 110 R----------NPQLVALL---AREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILLTS 174 (252)
T ss_dssp H----------CTHHHHHH---HHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEEEE
T ss_pred C----------CcchHHHH---HHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcC--CCEEEEEe
Confidence 1 12222222 233342 2333432 21121 1113456666777775 55554443
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccCCCCChhHHHH
Q 016605 272 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQL 351 (386)
Q Consensus 272 f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~ 351 (386)
. ...||- ..++.+- ++.+ +...+. .+-+++|--++ .+. ......|++.+..|. .......+.++..+
T Consensus 175 I-~~dG~~----~G~d~~~-~~~i---~~~~~~-pii~~GGv~~~-~di-~~l~~~g~~gv~~gs-~l~~~~~~~~~lk~ 241 (252)
T d1h5ya_ 175 I-DRDGTG----LGYDVEL-IRRV---ADSVRI-PVIASGGAGRV-EHF-YEAAAAGADAVLAAS-LFHFRVLSIAQVKR 241 (252)
T ss_dssp T-TTTTTC----SCCCHHH-HHHH---HHHCSS-CEEEESCCCSH-HHH-HHHHHTTCSEEEESH-HHHTTSSCHHHHHH
T ss_pred e-cccCcc----CCcCHHH-HHHH---HHhcCC-CEEEecCCCCH-HHH-HHHHHCCCCEEEEhh-HHHcCCCCHHHHHH
Confidence 2 233553 2344443 3222 223332 23344443333 233 334567899887776 33456679999999
Q ss_pred HHHHcCCCc
Q 016605 352 MFKVLGLTP 360 (386)
Q Consensus 352 ~i~~~G~~p 360 (386)
.+++.|+..
T Consensus 242 ~l~~~~i~v 250 (252)
T d1h5ya_ 242 YLKERGVEV 250 (252)
T ss_dssp HHHHTTCBC
T ss_pred HHHHcCCcc
Confidence 999999654
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=84.52 E-value=10 Score=31.62 Aligned_cols=177 Identities=16% Similarity=0.074 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHh-hcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik-~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
.++.+ .++.+.+.|+..+.+.+......| .++++ +.++ ...+++......+++.++.+-+.+|.|.|.+
T Consensus 65 ~dp~~---~A~~y~~~GA~aiSVLTe~~~F~G---s~~dl----~~v~~~~~iPvLrKDFIid~~QI~ea~~~GADaVLL 134 (254)
T d1vc4a_ 65 VDPVE---AALAYARGGARAVSVLTEPHRFGG---SLLDL----KRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALL 134 (254)
T ss_dssp CCHHH---HHHHHHHTTCSEEEEECCCSSSCC---CHHHH----HHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHH---HHHHHHhcCCceEEEEcCcccccc---cHHHH----HHHHHHcCCCcccCCccccHHHHHHHHhccchHHHH
Confidence 45544 456777889998877664333334 23333 3344 3467887777889999999999999999986
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
-....++ +..+-++.++..|+.+-+- -.+.+|+...+ +++ +..++++.-... | +
T Consensus 135 Iaall~~------------~l~~l~~~A~~lgl~~LVE-----vh~~~El~~a~----~~~--a~iIGINnRdL~--t-~ 188 (254)
T d1vc4a_ 135 IVALLGE------------LTGAYLEEARRLGLEALVE-----VHTERELEIAL----EAG--AEVLGINNRDLA--T-L 188 (254)
T ss_dssp EHHHHGG------------GHHHHHHHHHHHTCEEEEE-----ECSHHHHHHHH----HHT--CSEEEEESBCTT--T-C
T ss_pred HHHHHHH------------HHHHHHHHHHHhCCceEEE-----eccHHHHhhhh----cCC--CCEEEEeccchh--h-h
Confidence 4422211 1124457788889873221 23667765443 443 678888874331 1 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCCccccC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 341 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 341 (386)
..+.....++.........+ .+.++-+ ++....+...+.+|++.+..|+.++.+
T Consensus 189 ----~vd~~~~~~l~~~i~~~~~~-~i~IsES--GI~~~~dv~~l~~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 189 ----HINLETAPRLGRLARKRGFG-GVLVAES--GYSRKEELKALEGLFDAVLIGTSLMRA 242 (254)
T ss_dssp ----CBCTTHHHHHHHHHHHTTCC-SEEEEES--CCCSHHHHHTTTTTCSEEEECHHHHTS
T ss_pred ----hcchHHHHHhhhcccccCCC-CEEEEcc--CCCCHHHHHHHHcCCCEEEEChhhcCC
Confidence 12233334444444443333 3334321 122223455678899999999866644
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.45 E-value=0.12 Score=27.33 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=8.9
Q ss_pred CcCCCCCCCC
Q 016605 100 SEDCSYCPQS 109 (386)
Q Consensus 100 ~~~C~fC~~~ 109 (386)
|+.|.||+|.
T Consensus 2 PFkC~~CsFD 11 (29)
T d1x5wa2 2 PFKCNYCSFD 11 (29)
T ss_dssp SEECSSSSCE
T ss_pred Ccccceeccc
Confidence 6899999986
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=82.94 E-value=4.3 Score=33.56 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCCCCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i 200 (386)
++.+++....+.+.+.|.+-|--.+|....++.+ .....+.+.++..++.+-.+-|..+.+.+..|.++|.+++--
T Consensus 145 L~~~~i~~a~~~a~~aGadFVKTSTG~~~~gat~---~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGt 220 (234)
T d1n7ka_ 145 WDDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDP---VTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGT 220 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEESCCSSSCCCCSH---HHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cchHHHHHHHHHHHHhhhhheeecccccCCCCCH---HHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceeec
Confidence 6789999998988899987665555533333322 344455555555456666778888989999999999998654
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.36 E-value=3 Score=32.96 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcE-EEEe-------cC--CCCHHHHHHHHH
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCT-------LG--MLEKHQAIELKK 192 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~-i~~t-------~g--~l~~e~l~~Lk~ 192 (386)
+.+-+...++.+.+.|++.+++-+. .|+ .-..+++. ++ |++ ++++ +| .+++|..+.|++
T Consensus 17 T~~~l~~a~~rA~Elgi~~iVvASt----sG~--TA~~~~e~---~~--g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~ 85 (190)
T d1vp8a_ 17 TEETLRLAVERAKELGIKHLVVASS----YGD--TAMKALEM---AE--GLEVVVVTYHTGFVREGENTMPPEVEEELRK 85 (190)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECS----SSH--HHHHHHHH---CT--TCEEEEEECCTTSSSTTCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeC----CcH--HHHHHHHH---hc--CCeEEEEecccCCCCCCcccCCHHHHHHHHH
Confidence 3344444456677889999988542 242 12233333 33 445 3343 22 368999999999
Q ss_pred hccCeee--cccCch-HHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 016605 193 AGLTAYN--HNLDTS-REFYSKIITTRSYDERLETLKHVREAGINV 235 (386)
Q Consensus 193 aG~~~v~--i~le~~-~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v 235 (386)
.|++.+. +.+-+. +.+.+++.+-...+-+.++++.+--.|++|
T Consensus 86 ~G~~V~t~tH~lSg~eR~is~kfgG~~p~EiiA~tLR~lfgqG~KV 131 (190)
T d1vp8a_ 86 RGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKV 131 (190)
T ss_dssp TTCEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred cCCEEEEecccccchhhhhhhhcCCcCHHHHHHHHHHHHhCCCcEE
Confidence 9998776 455566 456666654445555556666444444443
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=82.12 E-value=4.3 Score=34.21 Aligned_cols=45 Identities=7% Similarity=0.177 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhhc-CcEEEEecCCCCHHHHHHHHHhccCeeecc
Q 016605 157 NFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 201 (386)
Q Consensus 157 ~~~~l~~~i~~ik~~-g~~i~~t~g~l~~e~l~~Lk~aG~~~v~i~ 201 (386)
..+.+.+.++.+|+. ..++++-.|..+++.++.++++|.|.+-+|
T Consensus 184 ~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVG 229 (261)
T d1rd5a_ 184 VNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 229 (261)
T ss_dssp BCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred chhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEEC
Confidence 345677777777754 667888889999999999999999998876
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=81.85 E-value=4.2 Score=33.13 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeeec
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.+++.+.++.+.+.|++.+-++- ..| .-++.|+.+++..-++.+-.|. ++.+.++...++|.+.+--
T Consensus 23 ~~~~~~~~~~~al~~~Gi~~iEitl------~~~----~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivS 92 (212)
T d1vhca_ 23 DNADDILPLADTLAKNGLSVAEITF------RSE----AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVT 92 (212)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEET------TST----THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC------CCh----hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEEC
Confidence 4678889999999999999887753 112 3356666666432234454554 7999999999999986542
Q ss_pred ccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCCC
Q 016605 201 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 280 (386)
Q Consensus 201 ~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~l 280 (386)
|+-+. +.++.+++.++.+-.+++ |..|+...+ ++| .+.+.++ |...+
T Consensus 93 -------------P~~~~----~v~~~a~~~~i~~iPGv~-----TpsEi~~A~----~~G--~~~vK~F-----PA~~~ 139 (212)
T d1vhca_ 93 -------------PGLNP----KIVKLCQDLNFPITPGVN-----NPMAIEIAL----EMG--ISAVKFF-----PAEAS 139 (212)
T ss_dssp -------------SSCCH----HHHHHHHHTTCCEECEEC-----SHHHHHHHH----HTT--CCEEEET-----TTTTT
T ss_pred -------------CCCCH----HHHHHHHhcCCCccCCcC-----CHHHHHHHH----HCC--CCEEEEc-----ccccc
Confidence 22222 567888999987544333 677766553 454 4444442 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 281 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 281 ~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
.... .+...+-.+|+..+ +.+|-++.. .-...|.+|+..+..|.
T Consensus 140 ------gG~~---~lkal~~p~p~~~~-~ptGGV~~~--N~~~yl~~g~v~~~~Gs 183 (212)
T d1vhca_ 140 ------GGVK---MIKALLGPYAQLQI-MPTGGIGLH--NIRDYLAIPNIVACGGS 183 (212)
T ss_dssp ------THHH---HHHHHHTTTTTCEE-EEBSSCCTT--THHHHHTSTTBCCEEEC
T ss_pred ------chHH---HHHHHhccccCCeE-EecCCCCHH--HHHHHHhCCCEEEEECh
Confidence 1222 23344456776322 233334432 22455666766554554
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.01 E-value=2.5 Score=35.40 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhc-CcEE-EEe--cCC---CCHHHHHHHHHhccCeeec
Q 016605 158 FNQILEYVKDIRDM-GMEV-CCT--LGM---LEKHQAIELKKAGLTAYNH 200 (386)
Q Consensus 158 ~~~l~~~i~~ik~~-g~~i-~~t--~g~---l~~e~l~~Lk~aG~~~v~i 200 (386)
.+.++++++++++. ..++ ..+ |.. -.++.++.++++|++.+-+
T Consensus 65 ~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Glii 114 (248)
T d1geqa_ 65 LREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILV 114 (248)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEec
Confidence 35666666666642 2332 111 111 1356677777777776655
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=80.93 E-value=4.1 Score=33.21 Aligned_cols=161 Identities=11% Similarity=0.021 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEecCC-CCHHHHHHHHHhccCeee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 199 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t~g~-l~~e~l~~Lk~aG~~~v~ 199 (386)
..+.++++..++.+.+.|++-+-++- ..| ..++.|+.+++..-++.+-.|. ++.+.++...++|.+.+-
T Consensus 23 ~~~~~~a~~~~~al~~~Gi~~iEitl------~tp----~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fiv 92 (213)
T d1wbha1 23 VKKLEHAVPMAKALVAGGVRVLNVTL------RTE----CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAI 92 (213)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEES------CST----THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeC------CCh----hHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEE
Confidence 35788999999999999999887753 112 3455566665432234444454 789999999999998654
Q ss_pred cccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeecCCCHHHHHHHHHHHhcCCCCCCeEeeeeeeecCCCC
Q 016605 200 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 279 (386)
Q Consensus 200 i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~f~P~~gT~ 279 (386)
- |+-+. +.++.+++.|+.+-.++ .|..|+... .++| .+.+.++ |...
T Consensus 93 S-------------P~~~~----~v~~~a~~~~i~~iPGv-----~TpsEi~~A----~~~G--~~~vKlF-----PA~~ 139 (213)
T d1wbha1 93 S-------------PGLTE----PLLKAATEGTIPLIPGI-----STVSELMLG----MDYG--LKEFKFF-----PAEA 139 (213)
T ss_dssp E-------------SSCCH----HHHHHHHHSSSCEEEEE-----SSHHHHHHH----HHTT--CCEEEET-----TTTT
T ss_pred C-------------CCCCH----HHHHHHHhcCCCccCCc-----CCHHHHHHH----HHCC--CCEEEec-----cchh
Confidence 2 22222 56788899998744433 367776654 3444 4444432 2322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCccccccCC
Q 016605 280 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 336 (386)
Q Consensus 280 l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~ 336 (386)
+ ....+ +...+-.+|+..+ +.+|-++.. .-..-|.+|+..+..|.
T Consensus 140 ~------Gg~~~---lkal~~p~p~~~~-~ptGGV~~~--n~~~yl~~g~v~~~~Gs 184 (213)
T d1wbha1 140 N------GGVKA---LQAIAGPFSQVRF-CPTGGISPA--NYRDYLALKSVLCIGGS 184 (213)
T ss_dssp T------THHHH---HHHHHTTCTTCEE-EEBSSCCTT--THHHHHTSTTBSCEEEG
T ss_pred c------ChHHH---HHHhcCcccCCce-eeeCCCCHH--HHHHHHhCCCEEEEECh
Confidence 2 22233 3344556776422 233334432 23456677766665554
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.87 E-value=14 Score=30.86 Aligned_cols=229 Identities=14% Similarity=0.041 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhc-CcEE-EEecCCCCHHHHHHHHHhccCee
Q 016605 121 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEV-CCTLGMLEKHQAIELKKAGLTAY 198 (386)
Q Consensus 121 ~~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~-g~~i-~~t~g~l~~e~l~~Lk~aG~~~v 198 (386)
.++.++.++.++.+.+.|++.|-++. +. -.+..++.+.......... .... ..................|....
T Consensus 29 ~~~~~~k~~i~~~L~~aGv~~IEvG~---p~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (310)
T d1sr9a2 29 PMSPARKRRMFDLLVRMGYKEIEVGF---PS-ASQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRA 104 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEC---TT-TCHHHHHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTCSEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC---Cc-CCHHHHHHHHHHHHhccccccceeeeeeeechhhhHHHHHhhcCccee
Confidence 38999999999999999999887642 11 1233444444443332211 2221 11122111112222233344333
Q ss_pred ecccCch-HHHHhhhCCCCCHHHHHHH--------HHHHHHc-CCe--eeEeEEeecCCCHHHHHHHHHHHhcCCCCCCe
Q 016605 199 NHNLDTS-REFYSKIITTRSYDERLET--------LKHVREA-GIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 266 (386)
Q Consensus 199 ~i~le~~-~~~~~~i~~~~s~~~~l~~--------i~~a~~~-Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 266 (386)
.+..... ...+.......+..+.... ...+.++ +.. +............+.....+..+.+.. ....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (310)
T d1sr9a2 105 IVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVI-APTP 183 (310)
T ss_dssp EEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHH-CCBT
T ss_pred eEEeecchhHHHHHHHhhccHHhhhhhhhhhhhHHHHHHHHhhcceeEEEEecccCCCCcHHHHHHHHHHHHHHh-hhhh
Confidence 3322222 2222222333333332222 1222222 222 333333333455566555555544321 0111
Q ss_pred EeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-ceeec-Ccc--cccChhHHHhhhhcCcccc---ccCCccc
Q 016605 267 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS-AGR--VRFSMPEQALCFLAGANSI---FTGEKLL 339 (386)
Q Consensus 267 v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~-~i~i~-~g~--~~~~~~~~~~~l~~Gan~~---~~g~~~~ 339 (386)
.++..+. .++|- ....+.+..+++...+..+|+. .+.+. ... .++.......++.+||+.+ +.|=. .
T Consensus 184 ~g~~~i~-l~Dt~----G~~~P~~v~~~v~~~~~~~~~~~~i~i~~H~Hn~~Gla~AN~laA~~aG~~~iD~si~GmG-~ 257 (310)
T d1sr9a2 184 ERPIIFN-LPATV----EMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNG-E 257 (310)
T ss_dssp TBCEEEE-EEESS----CCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-S
T ss_pred cCceEEe-ecccc----cccchhHHHHHHHHHHHhccCccceeeeeccccchhhhhHHHHHHHhccCCEEecCCcccc-c
Confidence 1222221 22332 2347888889999888888763 12221 111 2222334467889999987 22210 1
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 016605 340 TTPNNDFDADQLMFKVLGLTP 360 (386)
Q Consensus 340 t~~~~~~~~~~~~i~~~G~~p 360 (386)
.+++...++++.++++.|+.+
T Consensus 258 ~aGN~~tE~lv~~l~~~g~~~ 278 (310)
T d1sr9a2 258 RTGNVCLVTLGLNLFSRGVDP 278 (310)
T ss_dssp TTCBCBHHHHHHHHHTTTCCC
T ss_pred ccCChhHHHHHHHHHhcCCCC
Confidence 256678999999999999864
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.83 E-value=5.7 Score=33.16 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEecccCCCCCChhhHHHHHHHHHHHhhcCcEEEEe---------cCCCCHHHHHHHHH
Q 016605 122 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGMLEKHQAIELKK 192 (386)
Q Consensus 122 ~s~eeI~~~~~~~~~~G~~~v~l~~g~~~~~ge~~~~~~l~~~i~~ik~~g~~i~~t---------~g~l~~e~l~~Lk~ 192 (386)
+++.++.+.++.+.+. ++-+-+++|.... ..-+.+.+.|+..++.++.++.- .|. -++.++..++
T Consensus 23 lgl~~leD~Le~ag~y-ID~~K~g~Gt~~l----~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~qg~-~~~y~~~~~~ 96 (251)
T d1qwga_ 23 LPPKFVEDYLKVCGDY-IDFVKFGWGTSAV----IDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK-FDEFLNECEK 96 (251)
T ss_dssp CCHHHHHHHHHHHGGG-CSEEEECTTGGGG----SCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhh-eeEEEecCceeee----cCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHcCC-HHHHHHHHHH
Confidence 6777777777766554 6667776543211 12245777888888888876532 232 5788889999
Q ss_pred hccCeeecccCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-------CCCHHHHHHHHHHHhcCCCCCC
Q 016605 193 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-------GEAEEDRVGLLHTLATLPTHPE 265 (386)
Q Consensus 193 aG~~~v~i~le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-------get~ed~~~~l~~l~~l~~~~~ 265 (386)
.|++.|-++--+. .-+.+++.+.|+.+.+.|+.|-.-+ |. --+.+++.+.++..-+.| ..
T Consensus 97 lGf~~iEiSdg~~---------~i~~~~~~~~I~~~~~~G~~V~~Ev--G~K~~~~~~~~~~~~~i~~~~~~LeaG--A~ 163 (251)
T d1qwga_ 97 LGFEAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAG--AD 163 (251)
T ss_dssp HTCCEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHT--CS
T ss_pred cCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCEEeecc--cCCCCCCccccCHHHHHHHHHHHHHCC--Cc
Confidence 9999988864332 2356778888899999998754322 22 125677777777666665 44
Q ss_pred eEee
Q 016605 266 SVPI 269 (386)
Q Consensus 266 ~v~~ 269 (386)
.|-+
T Consensus 164 ~Vii 167 (251)
T d1qwga_ 164 YVII 167 (251)
T ss_dssp EEEE
T ss_pred eeEe
Confidence 4443
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=80.43 E-value=15 Score=30.80 Aligned_cols=177 Identities=13% Similarity=0.090 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccCC-------------CCCC---------hhhHHHHHHHHHHHhhcCcEEEEecC
Q 016605 123 TKDAVMQAAQKAKEAGSTRFCMGAAWRD-------------TIGR---------KTNFNQILEYVKDIRDMGMEVCCTLG 180 (386)
Q Consensus 123 s~eeI~~~~~~~~~~G~~~v~l~~g~~~-------------~~ge---------~~~~~~l~~~i~~ik~~g~~i~~t~g 180 (386)
+.+...+.++.+.+.|++.|-+|.-... .... ....+++.++.+..++.++...+++
T Consensus 32 d~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~- 110 (280)
T d2zdra2 32 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTP- 110 (280)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCcccccc-
Confidence 6788888899999999999888742100 0000 0123566677777778888876665
Q ss_pred CCCHHHHHHHHHhccCeeecc-cCchHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeEeEEeec-CCCHHHHHHHHHHHh
Q 016605 181 MLEKHQAIELKKAGLTAYNHN-LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLA 258 (386)
Q Consensus 181 ~l~~e~l~~Lk~aG~~~v~i~-le~~~~~~~~i~~~~s~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~ 258 (386)
.+.+.+..+.+.|++.+-++ -+.. + +.-|+.+.+.+.+ +++.. +-+.+|+.+.+.++.
T Consensus 111 -fd~~s~~~~~~~~~~~~KIaS~d~~-----------n----~~Li~~i~k~~kp----iiiStG~s~~~EI~~av~~~~ 170 (280)
T d2zdra2 111 -FSRAAALRLQRMDIPAYKIGSGECN-----------N----YPLIKLVASFGKP----IILSTGMNSIESIKKSVEIIR 170 (280)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGGTT-----------C----HHHHHHHHTTCSC----EEEECTTCCHHHHHHHHHHHH
T ss_pred -chhhcccccccccccceeccchhcc-----------c----cHhhhhhhhccCc----eeecccccchhHhhhhhhhhh
Confidence 46888999999999988763 2221 1 2345555666664 45555 568999999999987
Q ss_pred cCCCCCCeEeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcceeecCcccccChhHHHhhhhcCcccc
Q 016605 259 TLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 332 (386)
Q Consensus 259 ~l~~~~~~v~~~~f~P~~gT~l~~~~~~s~~e~~~~~a~~R~~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~ 332 (386)
..+ .+.+-++...-+| |+. .+--+..+...+..+++..+.++.= +.+......++..||..+
T Consensus 171 ~~~--~~~~llhc~s~YP-t~~-------~~~nL~~i~~lk~~f~~~~iG~SdH--~~g~~~~~~Ava~GA~~I 232 (280)
T d2zdra2 171 EAG--VPYALLHCTNIYP-TPY-------EDVRLGGMNDLSEAFPDAIIGLSDH--TLDNYACLGAVALGGSIL 232 (280)
T ss_dssp HHT--CCEEEEECCCCSS-CCG-------GGCCTTHHHHHHHHCTTSEEEEECC--SSSSHHHHHHHHTTCCEE
T ss_pred hcc--ccceEEEeeccCc-ccc-------ccccccccceeeccccccceeecCc--ccchhhHHHHHHCCCeEE
Confidence 764 3333333322222 222 1222344566666677654544421 123445677888899977
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