Citrus Sinensis ID: 016616

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------

MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL

ccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccEEEcccccHHccccccccccccEEEEccccccccEEEEEEccccccccccccccccccHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEccccccccccEEEEEccccccccHHHHHHHHHHHHcccEEccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccc

cccccHHHHccccccccccccccccccccHHHHHHHHHHccccccHHHHcccHHHHHHHHcccccEEEEEccccEEEcccccccccccccccccHHHHHHHHHccccccccccEEEEccccccccEEEEEEcccccccccHccHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccEEEccccHcccccccccccEEEEEEEcccccEEEEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHccEEcEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccEEEEcccccccccc

mstnlqtqafagnpirsktpkstdpfsptsalESLKTRlldntlhcqpqkhhsslssssssspdfkvlpfrkgrpltysgpgetapvwhlgwislgdCKIFLANSGIELKEEALVYLGSRSADDVVYWAIdvsdgdslasefgskqlCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNvsrfcghcgektipkeagklkqcsnasckkriyprvdPVVIMLVIDRENDRVLLSrqsrfvprmwsciagfiepgesLEEAVRRETWEETGIEVGEVVyhtsqpwpdarwhsREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLaadfnvesgelapifipgpFAIAHHLISswvykdapdgvqvqtapsstsmsnl

mstnlqtqafagnpirsktpkstdpfSPTSALESLKTRLLDNTLHCQPQKhhsslssssssspdFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEktipkeagklkqcsnasckkriyprvdPVVIMLVIDRENDRVLlsrqsrfvprMWSCIAgfiepgeslEEAVRRETWEETGIEVGEVVYHtsqpwpdarwhSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVqtapsstsmsnl

MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHsslsssssssPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL

***************************************************************************LTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDA******************

******T*A************************SLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVY*********************

MSTNLQTQAFAGNPIRSK************ALESLKTRLLDNTLHC******************FKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPDARWHSREDVKKALTFAEYIKAQ**********CKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQ*************

****L**Q*FA*NPIR*KTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTA*********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		386	2.2.26 [Sep-21-2011]
Q94A82		438	Nudix hydrolase 19, chlor	yes	no	0.958	0.844	0.649	1e-157
Q9Y7J0		376	Probable NADH pyrophospha	yes	no	0.624	0.640	0.327	4e-32
Q29RH3		444	Peroxisomal NADH pyrophos	yes	no	0.582	0.506	0.324	1e-31
Q4R7L8		462	Peroxisomal NADH pyrophos	N/A	no	0.577	0.482	0.327	2e-31
Q9DCN1		462	Peroxisomal NADH pyrophos	yes	no	0.704	0.588	0.300	3e-31
Q9BQG2		462	Peroxisomal NADH pyrophos	yes	no	0.582	0.487	0.327	5e-31
Q5RD76		462	Peroxisomal NADH pyrophos	yes	no	0.650	0.543	0.347	2e-29
Q8JZU0		352	Nucleoside diphosphate-li	no	no	0.523	0.573	0.355	1e-24
Q86X67		352	Nucleoside diphosphate-li	no	no	0.531	0.582	0.328	9e-22
Q9RV62		280	NADH pyrophosphatase OS=D	yes	no	0.308	0.425	0.406	1e-20

>sp\|Q94A82\|NUD19_ARATH Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1	Back alignment and function desciption

 Score =  555 bits (1429), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/419 (64%), Positives = 322/419 (76%), Gaps = 49/419 (11%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +               + + S+
Sbjct: 36  MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLI-------------PVIPNHST 82

Query: 61  SSPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SPDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct: 83  PSPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
            +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct: 143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct: 202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-------- 290
           SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWP        
Sbjct: 262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPC 321

Query: 291 -----------------------DARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 327
                                  DA+WHSRE+VKKAL  AEY KAQRTAAAKVEQ+CKGV
Sbjct: 322 QLMLGFFAFAKTLDINVDKEELEDAQWHSREEVKKALAVAEYRKAQRTAAAKVEQICKGV 381

Query: 328 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL 386
           ER QSL+ DFN+ESGELAP+FIPGPFAIAHHLIS+WV   APD V  +   +  S+S+L
Sbjct: 382 ERSQSLSTDFNLESGELAPMFIPGPFAIAHHLISAWV-NQAPDDVHSKQQ-AGVSLSSL 438

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Has a high affinity for NADPH compared with that for NADH.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp\|Q9Y7J0\|NPY1_SCHPO Probable NADH pyrophosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.03c PE=3 SV=1	Back alignment and function description

>sp\|Q29RH3\|NUD12_BOVIN Peroxisomal NADH pyrophosphatase NUDT12 OS=Bos taurus GN=NUDT12 PE=2 SV=1	Back alignment and function description

>sp\|Q4R7L8\|NUD12_MACFA Peroxisomal NADH pyrophosphatase NUDT12 OS=Macaca fascicularis GN=NUDT12 PE=2 SV=1	Back alignment and function description

>sp\|Q9DCN1\|NUD12_MOUSE Peroxisomal NADH pyrophosphatase NUDT12 OS=Mus musculus GN=Nudt12 PE=2 SV=1	Back alignment and function description

>sp\|Q9BQG2\|NUD12_HUMAN Peroxisomal NADH pyrophosphatase NUDT12 OS=Homo sapiens GN=NUDT12 PE=1 SV=1	Back alignment and function description

>sp\|Q5RD76\|NUD12_PONAB Peroxisomal NADH pyrophosphatase NUDT12 OS=Pongo abelii GN=NUDT12 PE=2 SV=1	Back alignment and function description

>sp\|Q8JZU0\|NUD13_MOUSE Nucleoside diphosphate-linked moiety X motif 13 OS=Mus musculus GN=Nudt13 PE=2 SV=2	Back alignment and function description

>sp\|Q86X67\|NUD13_HUMAN Nucleoside diphosphate-linked moiety X motif 13 OS=Homo sapiens GN=NUDT13 PE=2 SV=3	Back alignment and function description

>sp\|Q9RV62\|NUDC_DEIRA NADH pyrophosphatase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=nudC PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		386
225445438		441	PREDICTED: nudix hydrolase 19, chloropla	0.963	0.843	0.682	1e-161
255566955		400	mutt/nudix hydrolase, putative [Ricinus	0.909	0.877	0.695	1e-157
15241252		438	nudix hydrolase 19 [Arabidopsis thaliana	0.958	0.844	0.649	1e-155
297808073		438	hypothetical protein ARALYDRAFT_488907 [	0.958	0.844	0.649	1e-155
224122522		414	predicted protein [Populus trichocarpa]	0.904	0.842	0.671	1e-151
449443109		441	PREDICTED: nudix hydrolase 19, chloropla	0.917	0.802	0.665	1e-151
224088057		395	predicted protein [Populus trichocarpa]	0.906	0.886	0.649	1e-148
356514398		426	PREDICTED: nudix hydrolase 19, chloropla	0.945	0.856	0.634	1e-144
255636719		526	unknown [Glycine max]	0.955	0.701	0.569	1e-132
356513933		524	PREDICTED: LOW QUALITY PROTEIN: nudix hy	0.955	0.704	0.565	1e-130

>gi\|225445438\|ref\|XP_002285069.1\| PREDICTED: nudix hydrolase 19, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/419 (68%), Positives = 319/419 (76%), Gaps = 47/419 (11%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MSTNL+T AFAGNP+RS TPK    FSP SA E+LK+RLL+N L                
Sbjct: 37  MSTNLKTHAFAGNPLRSTTPKPESLFSPISAFETLKSRLLENAL--------------LP 82

Query: 61  SSPDFKVLPFRKGRPLTYSG--PGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SSP FKVLPFRKGRPL  S    G++ P+WHLGW +LGD K FLANS  +  E + VYLG
Sbjct: 83  SSPIFKVLPFRKGRPLAISTRPTGDSPPIWHLGWFNLGDFKGFLANSEFQPTENSFVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
           SRS DDVVYW IDVS+  SL  +FG+K   FVELRT+MVATDW D+RAM+DLAIAGHARA
Sbjct: 143 SRSEDDVVYWGIDVSEDSSLVPQFGAKHFGFVELRTLMVATDWTDERAMSDLAIAGHARA 202

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHN+S FCGHCGEKT+P EAG+ KQCSNA CKKRIYPRVDPVVIMLVIDRENDR LL
Sbjct: 203 LLEWHNISHFCGHCGEKTVPMEAGRRKQCSNALCKKRIYPRVDPVVIMLVIDRENDRALL 262

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-------- 290
           SRQSRFVPRMWSC+AGFIEPGESLEEAVRRETWEETG+EVGEV+YH+SQPWP        
Sbjct: 263 SRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGVEVGEVIYHSSQPWPVGPNSMPC 322

Query: 291 -----------------------DARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGV 327
                                  DA+WHSREDVKKALTFAEY KAQRTAAAKVEQMCKGV
Sbjct: 323 QLMMGFFAYAKSVEINVDKEELEDAQWHSREDVKKALTFAEYKKAQRTAAAKVEQMCKGV 382

Query: 328 ERGQSLAADFNVESGELAPIFIPGPFAIAHHLISSWVYKDAPDGVQVQTAPSSTSMSNL 386
           E+GQ+L+ADFNVESGELA +FIPGPFAIAHHLISSWV +   +GV+ Q    S S+SNL
Sbjct: 383 EKGQNLSADFNVESGELATMFIPGPFAIAHHLISSWVNQVPLNGVEAQLKQPSGSLSNL 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255566955\|ref\|XP_002524460.1\| mutt/nudix hydrolase, putative [Ricinus communis] gi\|223536248\|gb\|EEF37900.1\| mutt/nudix hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi|15241252|ref|NP_197507.1| nudix hydrolase 19 [Arabidopsis thaliana] gi|68565923|sp|Q94A82.1|NUD19_ARATH RecName: Full=Nudix hydrolase 19, chloroplastic; Short=AtNUDT19; AltName: Full=NADH pyrophosphatase NUDT19; Flags: Precursor gi|15146278|gb|AAK83622.1| AT5g20070/F28I16_220 [Arabidopsis thaliana] gi|19699164|gb|AAL90948.1| AT5g20070/F28I16_220 [Arabidopsis thaliana] gi|110742131|dbj|BAE98994.1| hypothetical protein [Arabidopsis thaliana] gi|332005407|gb|AED92790.1| nudix hydrolase 19 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297808073\|ref\|XP_002871920.1\| hypothetical protein ARALYDRAFT_488907 [Arabidopsis lyrata subsp. lyrata] gi\|297317757\|gb\|EFH48179.1\| hypothetical protein ARALYDRAFT_488907 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224122522\|ref\|XP_002330502.1\| predicted protein [Populus trichocarpa] gi\|222872436\|gb\|EEF09567.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449443109\|ref\|XP_004139323.1\| PREDICTED: nudix hydrolase 19, chloroplastic-like [Cucumis sativus] gi\|449520651\|ref\|XP_004167347.1\| PREDICTED: nudix hydrolase 19, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224088057\|ref\|XP_002308309.1\| predicted protein [Populus trichocarpa] gi\|222854285\|gb\|EEE91832.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356514398\|ref\|XP_003525893.1\| PREDICTED: nudix hydrolase 19, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|255636719\|gb\|ACU18695.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|356513933\|ref\|XP_003525662.1\| PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 19, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		386
TAIR\|locus:2147665		438	NUDX19 "nudix hydrolase homolo	0.715	0.630	0.695	5.4e-145
UNIPROTKB\|J9NRY3		460	NUDT12 "Uncharacterized protei	0.647	0.543	0.365	1.8e-32
UNIPROTKB\|E7EM93		444	NUDT12 "Peroxisomal NADH pyrop	0.647	0.563	0.364	7.7e-32
UNIPROTKB\|Q9BQG2		462	NUDT12 "Peroxisomal NADH pyrop	0.647	0.541	0.364	7.7e-32
UNIPROTKB\|Q29RH3		444	NUDT12 "Peroxisomal NADH pyrop	0.647	0.563	0.360	2e-31
UNIPROTKB\|E2RGZ2		426	NUDT12 "Uncharacterized protei	0.647	0.586	0.362	2.6e-31
ZFIN\|ZDB-GENE-050417-164		433	zgc:112020 "zgc:112020" [Danio	0.435	0.387	0.408	3.8e-31
POMBASE\|SPBC1778.03c		376	SPBC1778.03c "NADH pyrophospha	0.634	0.651	0.338	8.8e-31
MGI\|MGI:1915243		462	Nudt12 "nudix (nucleoside diph	0.650	0.543	0.351	1.4e-30
UNIPROTKB\|E1C2E5		465	NUDT12 "Uncharacterized protei	0.494	0.410	0.383	1e-29

TAIR\|locus:2147665 NUDX19 "nudix hydrolase homolog 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1092 (389.5 bits), Expect = 5.4e-145, Sum P(2) = 5.4e-145
 Identities = 203/292 (69%), Positives = 239/292 (81%)

Query:     1 MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHXXXXXXXX 60
             MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +     H  P            
Sbjct:    36 MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLIPVIPNHSTPS----------- 84

Query:    61 XXPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
               PDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct:    85 --PDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query:   119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
              +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct:   143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query:   179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
             LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct:   202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query:   239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290
             SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWP
Sbjct:   262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWP 313

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB\|J9NRY3 NUDT12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EM93 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BQG2 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29RH3 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RGZ2 NUDT12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050417-164 zgc:112020 "zgc:112020" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

POMBASE\|SPBC1778.03c SPBC1778.03c "NADH pyrophosphatase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

MGI\|MGI:1915243 Nudt12 "nudix (nucleoside diphosphate linked moiety X)-type motif 12" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C2E5 NUDT12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94A82	NUD19_ARATH	3, ., 6, ., 1, ., 2, 2	0.6491	0.9585	0.8447	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.976
3rd Layer	3.6.1.13	LOW CONFIDENCE prediction!
3rd Layer	3.6.1.22	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		386
COG2816		279	COG2816, NPY1, NTP pyrophosphohydrolases containin	4e-58
cd03429		131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	7e-46
PRK00241		256	PRK00241, nudC, NADH pyrophosphatase; Reviewed	8e-43
pfam00293		133	pfam00293, NUDIX, NUDIX domain	3e-17
cd02883		123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-15
cd04677		132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	2e-12
cd03424		137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	3e-12
COG1051		145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	1e-11
cd04664		129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	3e-11
cd04699		129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	4e-11
cd03427		137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	6e-11
cd04681		130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	8e-11
cd04676		129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	1e-09
COG0494		161	COG0494, MutT, NTP pyrophosphohydrolases including	2e-09
cd04511		130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	3e-09
cd04665		118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	3e-09
cd03675		134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	1e-08
cd03425		124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	2e-08
cd04670		127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	3e-08
cd04673		122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	8e-08
PRK10729		202	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; P	9e-08
PRK08999		312	PRK08999, PRK08999, hypothetical protein; Provisio	1e-07
TIGR00052		185	TIGR00052, TIGR00052, nudix-type nucleoside diphos	1e-07
cd04685		133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	2e-07
cd04680		120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	2e-07
cd04667		112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	4e-07
cd03671		147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	6e-07
cd04684		128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	1e-06
cd03673		131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	1e-06
cd04678		129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	1e-06
cd04695		131	cd04695, Nudix_Hydrolase_36, Members of the Nudix	2e-06
pfam09296		91	pfam09296, NUDIX-like, NADH pyrophosphatase-like r	2e-06
cd03674		138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	3e-06
PRK09438		148	PRK09438, nudB, dihydroneopterin triphosphate pyro	3e-06
cd04669		121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	4e-06
cd04671		123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	4e-06
cd04682		122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	5e-06
TIGR02705		156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	6e-06
cd04666		122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	1e-05
cd04691		117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	2e-05
pfam09297		32	pfam09297, zf-NADH-PPase, NADH pyrophosphatase zin	3e-05
cd04694		143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	3e-05
cd04696		125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	7e-05
cd03428		130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	7e-05
cd03426		157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	1e-04
cd04672		123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	1e-04
cd04687		128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	1e-04
cd04683		120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	1e-04
PRK00714		156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	2e-04
PRK15009		191	PRK15009, PRK15009, GDP-mannose pyrophosphatase Nu	2e-04
cd04689		125	cd04689, Nudix_Hydrolase_30, Members of the Nudix	3e-04
cd04679		125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	5e-04
PRK15472		141	PRK15472, PRK15472, nucleoside triphosphatase NudI	5e-04
PRK05379		340	PRK05379, PRK05379, bifunctional nicotinamide mono	0.001
cd04700		142	cd04700, DR1025_like, DR1025 from Deinococcus radi	0.002
PRK10776		129	PRK10776, PRK10776, nucleoside triphosphate pyroph	0.003
PLN02325		144	PLN02325, PLN02325, nudix hydrolase	0.003

>gnl\|CDD\|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  190 bits (484), Expect = 4e-58
 Identities = 91/312 (29%), Positives = 128/312 (41%), Gaps = 84/312 (26%)

Query: 88  WHLGWISLGDCKIFLAN--------SGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLA 139
               W+   + K+ L +          ++L  EAL+ +G         +A+ + +   L 
Sbjct: 18  DSTLWLVFSEGKLLLKDGELPFGAAENLDLVGEALLGIGEWG--GEPVFAVWLVEEIELP 75

Query: 140 SEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPK 199
             F       V+LR+++      +        +A  A  LLEW+   RFCG CG KT P+
Sbjct: 76  EPFE-----LVDLRSLL-----TELDE-GLFGLAARAVQLLEWYRSHRFCGRCGTKTYPR 124

Query: 200 EAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPG 259
           E G  + C    C    +PR+DP VI+ VI    D +LL+R  R  P M+S +AGF+EPG
Sbjct: 125 EGGWARVCPK--CGHEHFPRIDPCVIVAVIRG--DEILLARHPRHFPGMYSLLAGFVEPG 180

Query: 260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWP--------------------------DAR 293
           E+LE+AV RE +EE GI+V  V Y  SQPWP                          DAR
Sbjct: 181 ETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHSLMLGFMAEYDSGEITPDEGELEDAR 240

Query: 294 WHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPF 353
           W SR++V  AL         R                                +  P   
Sbjct: 241 WFSRDEVLPAL--PPDGTIAR-------------------------------RLIEPTLA 267

Query: 354 AIAHHLISSWVY 365
           AIA  LI +W  
Sbjct: 268 AIARELIKAWAE 279

Length = 279

>gnl\|CDD\|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP	Back alignment and domain information

>gnl\|CDD\|234699 PRK00241, nudC, NADH pyrophosphatase; Reviewed	Back alignment and domain information

>gnl\|CDD\|215841 pfam00293, NUDIX, NUDIX domain	Back alignment and domain information

>gnl\|CDD\|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	Back alignment and domain information

>gnl\|CDD\|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>gnl\|CDD\|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	Back alignment and domain information

>gnl\|CDD\|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	Back alignment and domain information

>gnl\|CDD\|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional	Back alignment and domain information

>gnl\|CDD\|236361 PRK08999, PRK08999, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase, YffH/AdpP family	Back alignment and domain information

>gnl\|CDD\|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>gnl\|CDD\|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	Back alignment and domain information

>gnl\|CDD\|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>gnl\|CDD\|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|220167 pfam09296, NUDIX-like, NADH pyrophosphatase-like rudimentary NUDIX domain	Back alignment and domain information

>gnl\|CDD\|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	Back alignment and domain information

>gnl\|CDD\|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD	Back alignment and domain information

>gnl\|CDD\|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|204192 pfam09297, zf-NADH-PPase, NADH pyrophosphatase zinc ribbon domain	Back alignment and domain information

>gnl\|CDD\|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>gnl\|CDD\|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	Back alignment and domain information

>gnl\|CDD\|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed	Back alignment and domain information

>gnl\|CDD\|184971 PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional	Back alignment and domain information

>gnl\|CDD\|240045 cd04689, Nudix_Hydrolase_30, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional	Back alignment and domain information

>gnl\|CDD\|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional	Back alignment and domain information

>gnl\|CDD\|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities	Back alignment and domain information

>gnl\|CDD\|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>gnl\|CDD\|215184 PLN02325, PLN02325, nudix hydrolase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		386
COG2816		279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	100.0
KOG3084		345	consensus NADH pyrophosphatase I of the Nudix fami	100.0
PRK00241		256	nudC NADH pyrophosphatase; Reviewed	100.0
cd03429		131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.71
cd04511		130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.7
cd04700		142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.62
COG1051		145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.58
PLN02325		144	nudix hydrolase	99.58
cd04679		125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.56
cd04691		117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.56
cd04680		120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.54
cd04683		120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.54
cd04677		132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.53
cd03672		145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.52
cd04681		130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.52
cd04684		128	Nudix_Hydrolase_25 Contains a crystal structure of	99.52
cd03673		131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.52
cd04670		127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.51
cd03430		144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.51
cd04697		126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.5
cd04696		125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.5
cd03424		137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.5
cd03675		134	Nudix_Hydrolase_2 Contains a crystal structure of	99.49
cd04669		121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.49
cd04673		122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.49
cd04671		123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.48
cd03427		137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.47
cd04678		129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.47
cd04664		129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.46
cd04666		122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.46
cd03671		147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.45
cd03426		157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.45
PRK15434		159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.44
PF00293		134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.44
PRK09438		148	nudB dihydroneopterin triphosphate pyrophosphatase	99.44
cd04693		127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.44
cd03428		130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.44
cd04687		128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.43
cd04682		122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.43
cd04690		118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.43
PRK11762		185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.42
cd04667		112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.42
cd03674		138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.41
PRK15472		141	nucleoside triphosphatase NudI; Provisional	99.41
cd04672		123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.41
cd04695		131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.41
cd04676		129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.4
PRK00714		156	RNA pyrophosphohydrolase; Reviewed	99.39
PRK10729		202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.39
cd04699		129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.38
PRK05379		340	bifunctional nicotinamide mononucleotide adenylylt	99.38
TIGR00052		185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.38
cd04689		125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.36
cd04692		144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.36
cd04661		132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.35
PRK15393		180	NUDIX hydrolase YfcD; Provisional	99.34
cd04686		131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.33
cd04688		126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.33
PRK10546		135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.32
cd02885		165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.31
cd04694		143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.31
PRK10776		129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.3
cd03425		124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.29
PRK10707		190	putative NUDIX hydrolase; Provisional	99.25
cd04674		118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.23
PRK03759		184	isopentenyl-diphosphate delta-isomerase; Provision	99.23
PRK15009		191	GDP-mannose pyrophosphatase NudK; Provisional	99.22
TIGR02150		158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.21
cd04685		133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.19
TIGR00586		128	mutt mutator mutT protein. All proteins in this fa	99.19
cd04665		118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.18
cd02883		123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.15
TIGR02705		156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.15
cd03676		180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.11
cd03670		186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.1
cd04662		126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.08
PRK08999		312	hypothetical protein; Provisional	98.96
PF09296		98	NUDIX-like: NADH pyrophosphatase-like rudimentary	98.91
COG0494		161	MutT NTP pyrophosphohydrolases including oxidative	98.87
cd04663		126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.86
PLN03143		291	nudix hydrolase; Provisional	98.85
PLN02709		222	nudix hydrolase	98.77
KOG2839		145	consensus Diadenosine and diphosphoinositol polyph	98.71
PLN02552		247	isopentenyl-diphosphate delta-isomerase	98.65
PLN02791		770	Nudix hydrolase homolog	98.61
KOG3041		225	consensus Nucleoside diphosphate-sugar hydrolase o	98.55
PF09297		32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	98.52
KOG3069		246	consensus Peroxisomal NUDIX hydrolase [Replication	98.29
COG4119		161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.2
cd03431		118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	97.92
COG1443		185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	97.9
KOG0648		295	consensus Predicted NUDIX hydrolase FGF-2 and rela	97.58
PLN02839		372	nudix hydrolase	97.43
PF14803		34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	97.19
KOG4195		275	consensus Transient receptor potential-related cha	96.4
PF14815		114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	96.39
PRK00432		50	30S ribosomal protein S27ae; Validated	95.09
COG1998		51	RPS31 Ribosomal protein S27AE [Translation, riboso	95.02
smart00661		52	RPOL9 RNA polymerase subunit 9.	94.04
PF03119		28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	93.57
KOG2937		348	consensus Decapping enzyme complex, predicted pyro	92.92
PF02150		35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	92.45
KOG4432		405	consensus Uncharacterized NUDIX family hydrolase [	91.55
COG4112		203	Predicted phosphoesterase (MutT family) [General f	89.58
KOG0142		225	consensus Isopentenyl pyrophosphate:dimethylallyl	88.45
PF13869		188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	87.8
PF13248		26	zf-ribbon_3: zinc-ribbon domain	82.86
COG4111		322	Uncharacterized conserved protein [General functio	80.08
PF13240		23	zinc_ribbon_2: zinc-ribbon domain	80.01

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	Back alignment and domain information

Probab=100.00  E-value=4.2e-46  Score=356.48  Aligned_cols=234  Identities=40%  Similarity=0.703  Sum_probs=190.0

Q ss_pred             CcEEEEEeCCceeeecCCCCCCCcceeccccchhhHHHhhhcCcCcccccEEEeeeecCCCceEEEEecCCCCCcccccc
Q 016616           64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG  143 (386)
Q Consensus        64 ~t~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vfLG~~~~~~~~~fa~~~~~~~~~~~~~~  143 (386)
                      .+++++|+++++++..++.   |      ++.  ....      .+......++|..  ++.++|++.+......     
T Consensus        19 ~~~~~~~~~~~l~l~~~~~---p------~~~--~~~~------~l~~~~~~~~~~~--~~~~v~~~~l~~~~~~-----   74 (279)
T COG2816          19 STLWLVFSEGKLLLKDGEL---P------FGA--AENL------DLVGEALLGIGEW--GGEPVFAVWLVEEIEL-----   74 (279)
T ss_pred             cceEEEEcCCcEEEecCCC---c------cch--hhcC------CchHHHhhhcccc--CCccceeeeccccccc-----
Confidence            7999999999999965332   1      111  1110      1123445677764  5678887765443321     


Q ss_pred             ccccchhhhHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhhhcCccccCCCCceeccCCccccccCCCCCceecCCCCcE
Q 016616          144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV  223 (386)
Q Consensus       144 ~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~p~  223 (386)
                      ..+..+++||+++..+      +...+.++++|++|++|+++||||++||++|.+.++|++++|+  .|+..+|||++|+
T Consensus        75 ~~~~~~~~lR~l~~~~------~~~~~~~~~~a~~l~~w~~~~RFCg~CG~~~~~~~~g~~~~C~--~cg~~~fPR~dP~  146 (279)
T COG2816          75 PEPFELVDLRSLLTEL------DEGLFGLAARAVQLLEWYRSHRFCGRCGTKTYPREGGWARVCP--KCGHEHFPRIDPC  146 (279)
T ss_pred             CCccceeeHHHHhccC------CHHHHHHHHHHHHHHHHHhhCcCCCCCCCcCccccCceeeeCC--CCCCccCCCCCCe
Confidence            2467889999998643      3467899999999999999999999999999999999999998  6999999999999


Q ss_pred             EEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC-------------
Q 016616          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-------------  290 (386)
Q Consensus       224 Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p-------------  290 (386)
                      |||+|++  ++++||.++.++++|+|++.+||||+|||+|+||+|||+||+||+|++++|++|||||             
T Consensus       147 vIv~v~~--~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~SLMigf~aey  224 (279)
T COG2816         147 VIVAVIR--GDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHSLMLGFMAEY  224 (279)
T ss_pred             EEEEEec--CCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchhhhhhheeee
Confidence            9999998  5568888888888999999999999999999999999999999999999999999999             


Q ss_pred             -------------CeeEeeHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC-CCccCCchhhHH
Q 016616          291 -------------DARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGEL-APIFIPGPFAIA  356 (386)
Q Consensus       291 -------------~a~W~~~eel~~~L~~d~~~~~~~~~~~~~~~i~~~~er~~~~~~~~~~~~~~~-~~~~lP~~~aIA  356 (386)
                                   |++||+++|+..+|..+                                  +.+ ..+..|+..+||
T Consensus       225 ~sgeI~~d~~Eleda~WFs~~evl~~L~~~----------------------------------~~~~~~li~~~~~~ia  270 (279)
T COG2816         225 DSGEITPDEGELEDARWFSRDEVLPALPPD----------------------------------GTIARRLIEPTLAAIA  270 (279)
T ss_pred             ccccccCCcchhhhccccCHhHHhhhcCCC----------------------------------CCcccccccchHHHHH
Confidence                         89999999977766521                                  111 245689999999


Q ss_pred             HHHHHHHHc
Q 016616          357 HHLISSWVY  365 (386)
Q Consensus       357 ~~Li~~w~~  365 (386)
                      ++++++|.+
T Consensus       271 ~~~~~~~~~  279 (279)
T COG2816         271 RELIKAWAE  279 (279)
T ss_pred             HHHHhhhcC
Confidence            999999963

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]	Back alignment and domain information

>PRK00241 nudC NADH pyrophosphatase; Reviewed	Back alignment and domain information

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP	Back alignment and domain information

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities	Back alignment and domain information

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	Back alignment and domain information

>PLN02325 nudix hydrolase	Back alignment and domain information

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex	Back alignment and domain information

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	Back alignment and domain information

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	Back alignment and domain information

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	Back alignment and domain information

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	Back alignment and domain information

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional	Back alignment and domain information

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []	Back alignment and domain information

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional	Back alignment and domain information

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional	Back alignment and domain information

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK15472 nucleoside triphosphatase NudI; Provisional	Back alignment and domain information

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK00714 RNA pyrophosphohydrolase; Reviewed	Back alignment and domain information

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional	Back alignment and domain information

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional	Back alignment and domain information

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family	Back alignment and domain information

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily	Back alignment and domain information

>PRK15393 NUDIX hydrolase YfcD; Provisional	Back alignment and domain information

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway	Back alignment and domain information

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	Back alignment and domain information

>PRK10707 putative NUDIX hydrolase; Provisional	Back alignment and domain information

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional	Back alignment and domain information

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional	Back alignment and domain information

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1	Back alignment and domain information

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>TIGR00586 mutt mutator mutT protein	Back alignment and domain information

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD	Back alignment and domain information

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P	Back alignment and domain information

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK08999 hypothetical protein; Provisional	Back alignment and domain information

>PF09296 NUDIX-like: NADH pyrophosphatase-like rudimentary NUDIX domain; InterPro: IPR015375 This entry represents the N-terminal domain found in NADH pyrophosphatase	Back alignment and domain information

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PLN03143 nudix hydrolase; Provisional	Back alignment and domain information

>PLN02709 nudix hydrolase	Back alignment and domain information

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]	Back alignment and domain information

>PLN02552 isopentenyl-diphosphate delta-isomerase	Back alignment and domain information

>PLN02791 Nudix hydrolase homolog	Back alignment and domain information

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]	Back alignment and domain information

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains	Back alignment and domain information

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]	Back alignment and domain information

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread AoxoG residues to CG by removing the inappropriately paired adenine base from the DNA backbone	Back alignment and domain information

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]	Back alignment and domain information

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PLN02839 nudix hydrolase	Back alignment and domain information

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C	Back alignment and domain information

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A	Back alignment and domain information

>PRK00432 30S ribosomal protein S27ae; Validated	Back alignment and domain information

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00661 RPOL9 RNA polymerase subunit 9	Back alignment and domain information

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]	Back alignment and domain information

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2	Back alignment and domain information

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]	Back alignment and domain information

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]	Back alignment and domain information

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A	Back alignment and domain information

>PF13248 zf-ribbon_3: zinc-ribbon domain	Back alignment and domain information

>COG4111 Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>PF13240 zinc_ribbon_2: zinc-ribbon domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		386
2gb5_A		269	Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1		7e-20
1vk6_A		269	Crystal Structure Of Nadh Pyrophosphatase (1790429)		7e-20
3smd_A		153	Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM		6e-05
2o1c_A		150	Structure Of The E. Coli Dihydroneopterin Triphosph		2e-04

>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 At 2.30 A Resolution Length = 269

Back alignment and structure

Iteration: 1

Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 76/121 (62%), Gaps = 4/121 (3%) Query: 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI 229 +AG L E++ ++CG+CG + P + CS+ C++R YP++ P +I+ + Sbjct: 91 FQLAGRGVQLAEFYRSHKYCGYCGHEXYPSKTEWAXLCSH--CRERYYPQIAPCIIVAI- 147 Query: 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289 R +D +LL++ +R + + +AGF+E GE+LE+AV RE EE+GI+V + Y TSQPW Sbjct: 148 -RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGIKVKNLRYVTSQPW 206 Query: 290 P 290 P Sbjct: 207 P 207

PyMOL of 2gb5

>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From Escherichia Coli K12 At 2.20 A Resolution Length = 269

Back alignment and structure

>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM BACILLUS Thuringiensis Length = 153

Back alignment and structure

>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate Pyrophosphohydrolase Length = 150

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		386
1vk6_A		269	NADH pyrophosphatase; 1790429, structural genomics	6e-67
3cng_A		189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-36
3id9_A		171	MUTT/nudix family protein; hydrolase, protein stru	5e-28
1sjy_A		159	MUTT/nudix family protein; nudix fold, alpha-beta-	1e-25
2b0v_A		153	Nudix hydrolase; structural genomics, PSI, protein	2e-21
3shd_A		153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	1e-18
3o8s_A		206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	3e-18
3h95_A		199	Nucleoside diphosphate-linked moiety X motif 6; NU	9e-18
2b06_A		155	MUTT/nudix family protein; structural genomics, P	2e-16
3gg6_A		156	Nudix motif 18, nucleoside diphosphate-linked moie	2e-16
3eds_A		153	MUTT/nudix family protein; MUT/nudix protein, prot	4e-16
3f13_A		163	Putative nudix hydrolase family member; structural	4e-16
2yyh_A		139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	5e-16
3exq_A		161	Nudix family hydrolase; protein structure initiati	1e-15
3q93_A		176	7,8-dihydro-8-oxoguanine triphosphatase; structura	4e-15
3q1p_A		205	Phosphohydrolase (MUTT/nudix family protein); asym	4e-15
4dyw_A		157	MUTT/nudix family protein; structural genomics, ni	5e-15
3grn_A		153	MUTT related protein; structural genomics, hydrola	1e-13
3fk9_A		188	Mutator MUTT protein; structural genomics, hydrola	3e-13
2pqv_A		154	MUTT/nudix family protein; structu genomics, PSI-2	1e-12
3oga_A		165	Nucleoside triphosphatase NUDI; salmonella enteric	3e-12
1g0s_A		209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	6e-12
1rya_A		160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	7e-12
3i9x_A		187	MUTT/nudix family protein; structural genomics, hy	7e-12
1vcd_A		126	NDX1; nudix protein, diadenosine polyphosphate, AP	3e-11
2fml_A		273	MUTT/nudix family protein; structural genomics, PS	7e-11
2azw_A		148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	1e-10
3o6z_A		191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	2e-10
1k2e_A		156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	2e-10
2qjt_B		352	Nicotinamide-nucleotide adenylyltransferase; two i	3e-10
2pbt_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	3e-10
3son_A		149	Hypothetical nudix hydrolase; structural genomics,	3e-10
2jvb_A		146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	7e-10
2qjo_A		341	Bifunctional NMN adenylyltransferase/nudix hydrol;	8e-10
2fvv_A		194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-09
1xsa_A		153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	2e-09
1ktg_A		138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	4e-09
2a6t_A		271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-08
2o1c_A		150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-08
3f6a_A		159	Hydrolase, nudix family; protein structure initiat	2e-08
3fcm_A		197	Hydrolase, nudix family; protein structure initiat	4e-08
3gz5_A		240	MUTT/nudix family protein; DNA binding protein, nu	8e-08
2w4e_A		145	MUTT/nudix family protein; ADP-ribose pyrophosphat	8e-08
1mut_A		129	MUTT, nucleoside triphosphate pyrophosphohydrolase	8e-08
2yvp_A		182	NDX2, MUTT/nudix family protein; nudix protein, AD	1e-07
2dsc_A		212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	2e-07
1vhz_A		198	ADP compounds hydrolase NUDE; structural genomics;	2e-07
1v8y_A		170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	2e-07
2fb1_A		226	Conserved hypothetical protein; structural genomic	2e-07
3ees_A		153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	4e-07
2rrk_A		140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	5e-07
3hhj_A		158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	1e-06
1mk1_A		207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	1e-06
3gwy_A		140	Putative CTP pyrophosphohydrolase; structural geno	1e-06
3r03_A		144	Nudix hydrolase; structural genomics, PSI2, protei	1e-06
1q27_A		171	Putative nudix hydrolase DR0079; radiation resista	2e-06
3fjy_A		364	Probable MUTT1 protein; dimer, protein structure i	2e-06
2fkb_A		180	Putative nudix hydrolase YFCD; putative protein, M	2e-06
3dup_A		300	MUTT/nudix family protein; nudix superfamily hydro	1e-05
1nqz_A		194	COA pyrophosphatase (MUTT/nudix family protein); D	4e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1hzt_A		190	Isopentenyl diphosphate delta-isomerase; dimethyla	7e-05
2kdv_A		164	RNA pyrophosphohydrolase; nudix family, magnesium,	1e-04
1f3y_A		165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	2e-04
2xsq_A		217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	6e-04
3q91_A		218	Uridine diphosphate glucose pyrophosphatase; struc	7e-04

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269	Back alignment and structure

 Score =  212 bits (541), Expect = 6e-67
 Identities = 62/307 (20%), Positives = 110/307 (35%), Gaps = 104/307 (33%)

Query: 92  WISLGDCKIFLAN--------SGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG 143
           W+   + K++L          +  +L  +  + +G         W +             
Sbjct: 25  WVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEW--QGEPVWLVQQQRRHD------ 76

Query: 144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGK 203
                   +R V+               +AG    L E++   ++CG+CG +  P +   
Sbjct: 77  -----MGSVRQVIDLDV-------GLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEW 124

Query: 204 LKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
              CS+  C++R YP++ P +I+ +    +D +LL++ +R    + + +AGF+E GE+LE
Sbjct: 125 AMLCSH--CRERYYPQIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLE 180

Query: 264 EAVRRETWEETGIEVGEVVYHTSQPWP--------------------------DARWHSR 297
           +AV RE  EE+GI+V  + Y TSQPWP                          +A W+  
Sbjct: 181 QAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRY 240

Query: 298 EDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFNVESGELAPIFIPGPFAIAH 357
           +D+                                                +P P  +A 
Sbjct: 241 DDLP----------------------------------------------LLPPPGTVAR 254

Query: 358 HLISSWV 364
            LI   V
Sbjct: 255 RLIEDTV 261

PyMOL of 1vk6

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189	Back alignment and structure

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171	Back alignment and structure

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159	Back alignment and structure

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153	Back alignment and structure

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153	Back alignment and structure

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206	Back alignment and structure

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199	Back alignment and structure

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155	Back alignment and structure

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156	Back alignment and structure

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163	Back alignment and structure

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139	Back alignment and structure

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161	Back alignment and structure

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176	Back alignment and structure

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205	Back alignment and structure

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157	Back alignment and structure

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153	Back alignment and structure

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188	Back alignment and structure

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154	Back alignment and structure

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165	Back alignment and structure

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209	Back alignment and structure

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160	Back alignment and structure

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187	Back alignment and structure

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126	Back alignment and structure

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273	Back alignment and structure

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148	Back alignment and structure

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191	Back alignment and structure

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156	Back alignment and structure

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352	Back alignment and structure

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149	Back alignment and structure

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146	Back alignment and structure

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341	Back alignment and structure

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194	Back alignment and structure

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153	Back alignment and structure

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138	Back alignment and structure

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271	Back alignment and structure

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150	Back alignment and structure

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159	Back alignment and structure

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197	Back alignment and structure

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240	Back alignment and structure

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145	Back alignment and structure

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129	Back alignment and structure

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182	Back alignment and structure

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212	Back alignment and structure

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198	Back alignment and structure

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170	Back alignment and structure

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226	Back alignment and structure

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153	Back alignment and structure

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140	Back alignment and structure

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158	Back alignment and structure

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207	Back alignment and structure

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140	Back alignment and structure

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144	Back alignment and structure

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171	Back alignment and structure

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364	Back alignment and structure

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180	Back alignment and structure

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300	Back alignment and structure

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190	Back alignment and structure

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164	Back alignment and structure

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165	Back alignment and structure

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Length = 217	Back alignment and structure

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} Length = 218	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		386
1vk6_A		269	NADH pyrophosphatase; 1790429, structural genomics	100.0
3cng_A		189	Nudix hydrolase; structural genomics, APC7497, PSI	99.86
3gz5_A		240	MUTT/nudix family protein; DNA binding protein, nu	99.77
2fb1_A		226	Conserved hypothetical protein; structural genomic	99.77
2qjt_B		352	Nicotinamide-nucleotide adenylyltransferase; two i	99.76
2fml_A		273	MUTT/nudix family protein; structural genomics, PS	99.7
2qjo_A		341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.69
3i7u_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.67
3u53_A		155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.61
2fvv_A		194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.59
2yyh_A		139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.59
2w4e_A		145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.58
3i9x_A		187	MUTT/nudix family protein; structural genomics, hy	99.58
2pbt_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.57
3gg6_A		156	Nudix motif 18, nucleoside diphosphate-linked moie	99.55
3id9_A		171	MUTT/nudix family protein; hydrolase, protein stru	99.54
3h95_A		199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.54
1vcd_A		126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.54
2b0v_A		153	Nudix hydrolase; structural genomics, PSI, protein	99.53
3gwy_A		140	Putative CTP pyrophosphohydrolase; structural geno	99.52
3shd_A		153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.52
1g0s_A		209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.52
2yvp_A		182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.52
3q1p_A		205	Phosphohydrolase (MUTT/nudix family protein); asym	99.52
4dyw_A		157	MUTT/nudix family protein; structural genomics, ni	99.51
1v8y_A		170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.51
2azw_A		148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.5
3o6z_A		191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.5
1ktg_A		138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.49
3fcm_A		197	Hydrolase, nudix family; protein structure initiat	99.49
3o8s_A		206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.49
1vhz_A		198	ADP compounds hydrolase NUDE; structural genomics;	99.48
3q93_A		176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.47
3grn_A		153	MUTT related protein; structural genomics, hydrola	99.47
2o1c_A		150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.47
3son_A		149	Hypothetical nudix hydrolase; structural genomics,	99.47
3exq_A		161	Nudix family hydrolase; protein structure initiati	99.47
3eds_A		153	MUTT/nudix family protein; MUT/nudix protein, prot	99.46
3f13_A		163	Putative nudix hydrolase family member; structural	99.45
1sjy_A		159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.45
2jvb_A		146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.44
1k2e_A		156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.43
1f3y_A		165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.43
3q91_A		218	Uridine diphosphate glucose pyrophosphatase; struc	99.43
3oga_A		165	Nucleoside triphosphatase NUDI; salmonella enteric	99.42
2rrk_A		140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.41
3f6a_A		159	Hydrolase, nudix family; protein structure initiat	99.41
2fkb_A		180	Putative nudix hydrolase YFCD; putative protein, M	99.41
3ees_A		153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.41
3fk9_A		188	Mutator MUTT protein; structural genomics, hydrola	99.41
1mk1_A		207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.41
3r03_A		144	Nudix hydrolase; structural genomics, PSI2, protei	99.4
1q27_A		171	Putative nudix hydrolase DR0079; radiation resista	99.4
1hzt_A		190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.38
2pqv_A		154	MUTT/nudix family protein; structu genomics, PSI-2	99.37
3hhj_A		158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.36
1nqz_A		194	COA pyrophosphatase (MUTT/nudix family protein); D	99.36
2a6t_A		271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.36
2b06_A		155	MUTT/nudix family protein; structural genomics, P	99.35
1rya_A		160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.35
2dsc_A		212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.34
3e57_A		211	Uncharacterized protein TM1382; structural genomic	99.33
1mut_A		129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.32
2kdv_A		164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.29
1x51_A		155	A/G-specific adenine DNA glycosylase; nudix domain	99.23
3fjy_A		364	Probable MUTT1 protein; dimer, protein structure i	99.2
2dho_A		235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.11
2pny_A		246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.09
1q33_A		292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.01
1u20_A		212	U8 snoRNA-binding protein X29; modified nudix hydr	99.01
2xsq_A		217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	98.93
3fsp_A		369	A/G-specific adenine glycosylase; protein-DNA comp	98.93
3dup_A		300	MUTT/nudix family protein; nudix superfamily hydro	98.86
3qsj_A		232	Nudix hydrolase; structural genomics, PSI-biology,	98.7
3rh7_A		321	Hypothetical oxidoreductase; FMN-binding split bar	98.54
3kvh_A		214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.51
3bho_A		208	Cleavage and polyadenylation specificity factor su	98.33
3j20_Y		50	30S ribosomal protein S27AE; archaea, archaeal, KI	96.7
2k4x_A		55	30S ribosomal protein S27AE; metal-binding, ribonu	93.18
3h0g_I		113	DNA-directed RNA polymerases I, II, and III subuni	85.43

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A	Back alignment and structure

Probab=100.00  E-value=2.6e-37  Score=297.61  Aligned_cols=191  Identities=26%  Similarity=0.490  Sum_probs=159.1

Q ss_pred             CCCCCCcEEEEEeCCceeeecCCCCCCCcceeccccchhhHHHhhhcCcCcccccEEEeeeecCCCceEEEEecCCCCCc
Q 016616           59 SSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSL  138 (386)
Q Consensus        59 ~~~~p~t~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vfLG~~~~~~~~~fa~~~~~~~~~  138 (386)
                      .++...+++++|.++++|+.. ++       +.+....++..         .....+|||..  ++.+||+++++  .  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~---------~~~~~~~lg~~--~~~~~~~~~~~--~--   73 (269)
T 1vk6_A           17 IEKLDHGWWVVSHEQKLWLPK-GE-------LPYGEAANFDL---------VGQRALQIGEW--QGEPVWLVQQQ--R--   73 (269)
T ss_dssp             CCTTCEEEEEEEETTEEECGG-GS-------CCEEEGGGGTC---------TTCEEEEEEES--SSSEEEEEECC--C--
T ss_pred             cCCCCCeEEEEEECCEEEEeC-CC-------cCCCChhhcCc---------ccCceEEEecc--CCEEEEEEecC--C--
Confidence            456777999999999999954 21       12222222211         22467899985  67899999875  1  


Q ss_pred             cccccccccchhhhHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhhhcCccccCCCCceeccCCccccccCCCCCceecC
Q 016616          139 ASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (386)
Q Consensus       139 ~~~~~~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (386)
                             +..+.++|.++..       +..+++++++|++|++|+++++||+.||+++....+++++.|+  +|+..+||
T Consensus        74 -------~~~~~~lr~~~~~-------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~C~~~~yp  137 (269)
T 1vk6_A           74 -------RHDMGSVRQVIDL-------DVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCS--HCRERYYP  137 (269)
T ss_dssp             -------SSCEECTTHHHHH-------CHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred             -------CccchhHHHHhcC-------CHHHhHHHHHHHHHHhhhhcCCccccCCCcCccCCCceeeeCC--CCCCEecC
Confidence                   3456789988743       2357789999999999999999999999999999999999997  69999999


Q ss_pred             CCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC
Q 016616          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP  290 (386)
Q Consensus       219 r~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p  290 (386)
                      ++.|+|+++|.+  +++|||+|+.+++.|+|++|||+||+|||+++||+||++||||+++..++|+++++|+
T Consensus       138 ~~~~~viv~v~~--~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~  207 (269)
T 1vk6_A          138 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWP  207 (269)
T ss_dssp             CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEe--CCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecC
Confidence            999999988876  6899999998777899999999999999999999999999999999999999999876

PyMOL of 1vk6

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}	Back alignment and structure

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*	Back alignment and structure

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B	Back alignment and structure

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}	Back alignment and structure

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*	Back alignment and structure

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*	Back alignment and structure

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*	Back alignment and structure

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}	Back alignment and structure

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}	Back alignment and structure

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}	Back alignment and structure

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}	Back alignment and structure

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}	Back alignment and structure

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}	Back alignment and structure

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*	Back alignment and structure

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1	Back alignment and structure

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0	Back alignment and structure

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A	Back alignment and structure

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A	Back alignment and structure

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*	Back alignment and structure

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A	Back alignment and structure

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}	Back alignment and structure

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A	Back alignment and structure

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1	Back alignment and structure

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A	Back alignment and structure

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*	Back alignment and structure

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}	Back alignment and structure

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}	Back alignment and structure

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*	Back alignment and structure

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A	Back alignment and structure

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}	Back alignment and structure

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A	Back alignment and structure

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}	Back alignment and structure

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}	Back alignment and structure

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}	Back alignment and structure

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*	Back alignment and structure

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A	Back alignment and structure

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*	Back alignment and structure

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}	Back alignment and structure

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A	Back alignment and structure

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}	Back alignment and structure

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}	Back alignment and structure

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2	Back alignment and structure

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*	Back alignment and structure

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}	Back alignment and structure

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*	Back alignment and structure

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0	Back alignment and structure

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A	Back alignment and structure

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*	Back alignment and structure

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}	Back alignment and structure

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}	Back alignment and structure

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A	Back alignment and structure

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*	Back alignment and structure

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1	Back alignment and structure

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*	Back alignment and structure

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*	Back alignment and structure

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}	Back alignment and structure

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*	Back alignment and structure

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A	Back alignment and structure

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3	Back alignment and structure

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}	Back alignment and structure

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*	Back alignment and structure

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}	Back alignment and structure

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*	Back alignment and structure

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*	Back alignment and structure

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A	Back alignment and structure

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*	Back alignment and structure

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}	Back alignment and structure

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}	Back alignment and structure

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}	Back alignment and structure

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A	Back alignment and structure

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}	Back alignment and structure

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8	Back alignment and structure

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		386
d1vk6a2		131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	2e-18
d1irya_		156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-15
d2a6ta2		151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-13
d1sjya_		158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	5e-13
d2fmla2		202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	3e-11
d2fvva1		135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	3e-11
d2b0va1		146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	7e-11
d2b06a1		155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	1e-10
d1ryaa_		160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	2e-10
d2azwa1		147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-10
d1vcda1		126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	4e-10
d1v8ya_		158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	1e-09
d1vhza_		186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	3e-09
d1k2ea_		152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	4e-09
d2fb1a2		147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	4e-09
d1u20a1		196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	5e-09
d1xsba_		153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	8e-09
d1hzta_		153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	7e-07
d1g0sa_		209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	2e-06
d1puna_		129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	1e-05
d1nqza_		187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	2e-05
d1q33a_		292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-05
d1ktga_		137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	3e-05
d1jkna_		165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	4e-05
d2o5fa1		162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-04
d2fkba1		161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	3e-04

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 78.6 bits (193), Expect = 2e-18
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++ P +I+ +    +D +LL++ +R    + + +AGF+E GE+LE+AV RE  EE+GI+V
Sbjct: 1   QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKV 58

Query: 279 GEVVYHTSQPWPDARWHSREDVKKALTFAEYIKAQRTAAAKVEQMCKGVERGQSLAADFN 338
             + Y TSQPWP     S      A   +  I        +                 + 
Sbjct: 59  KNLRYVTSQPWP--FPQSLMTAFMAEYDSGDIVIDPKELLEANW--------------YR 102

Query: 339 VESGELAPIFIPGPFAIAHHLISSWV 364
            +  +L  +  P P  +A  LI   V
Sbjct: 103 YD--DLPLL--PPPGTVARRLIEDTV 124

PyMOL of d1vk6a2

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156	Back information, alignment and structure

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151	Back information, alignment and structure

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158	Back information, alignment and structure

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202	Back information, alignment and structure

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135	Back information, alignment and structure

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146	Back information, alignment and structure

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155	Back information, alignment and structure

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160	Back information, alignment and structure

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147	Back information, alignment and structure

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126	Back information, alignment and structure

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158	Back information, alignment and structure

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186	Back information, alignment and structure

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152	Back information, alignment and structure

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147	Back information, alignment and structure

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196	Back information, alignment and structure

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153	Back information, alignment and structure

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153	Back information, alignment and structure

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209	Back information, alignment and structure

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129	Back information, alignment and structure

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187	Back information, alignment and structure

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137	Back information, alignment and structure

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165	Back information, alignment and structure

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162	Back information, alignment and structure

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		386
d1vk6a2		131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.84
d2fb1a2		147	Hypothetical protein BT0354, N-terminal domain {Ba	99.71
d1sjya_		158	Hypothetical protein DR1025 {Deinococcus radiodura	99.67
d2fmla2		202	Hypothetical protein EF2700, N-terminal domain {En	99.65
d1vcda1		126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.64
d2b0va1		146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.6
d1ktga_		137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.58
d2b06a1		155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.57
d2azwa1		147	Hypothetical protein EF1141 {Enterococcus faecalis	99.56
d1jkna_		165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.55
d1k2ea_		152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.55
d1v8ya_		158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.54
d1irya_		156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.54
d2fvva1		135	Diphosphoinositol polyphosphate phosphohydrolase {	99.54
d2a6ta2		151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.53
d1vhza_		186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.49
d1mqea_		202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.48
d2fkba1		161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.48
d1ryaa_		160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.47
d2o5fa1		162	Hypothetical protein DR0079 {Deinococcus radiodura	99.47
d1puna_		129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.45
d1hzta_		153	Isopentenyl diphosphate isomerase {Escherichia col	99.44
d1g0sa_		209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.43
d1xsba_		153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.43
d1nqza_		187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.34
d1viua_		189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.24
d1q33a_		292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.09
d1rrqa2		127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.08
d1u20a1		196	U8 snorna-binding protein x29 {African clawed frog	98.89
d1x51a1		142	A/G-specific adenine DNA glycosylase {Human (Homo	98.41
d1vk6a3		97	NADH pyrophosphatase {Escherichia coli [TaxId: 562	97.52
d1vk6a4		29	NADH pyrophosphatase intervening domain {Escherich	97.32
d2k4xa1		55	Ribosomal protein S27ae {Thermoplasma acidophilum	91.8

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.3e-21  Score=165.97  Aligned_cols=70  Identities=43%  Similarity=0.806  Sum_probs=61.5

Q ss_pred             CCCcEEEEEEEeCCCCEEEEEEeccCCCCceEeeeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEeeeeCC
Q 016616          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP  290 (386)
Q Consensus       219 r~~p~Vivlv~~~~~~~vLL~rr~~~~~g~wslPgG~Ve~GEtleeAa~REv~EEtGl~v~~v~~~~s~p~p  290 (386)
                      ++.|+|+++|.+  ++++||+|+.+.+.|.|++|||+||+|||+++||+||++||||+++....+++..+++
T Consensus         1 ~i~paViv~i~~--~~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~   70 (131)
T d1vk6a2           1 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWP   70 (131)
T ss_dssp             CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEE
T ss_pred             CcccEEEEEEEe--CCEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccC
Confidence            467999998887  6899999998877899999999999999999999999999999999887777665544

PyMOL of d1vk6a2

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}	Back information, alignment and structure

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}	Back information, alignment and structure

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vk6a3 d.113.1.4 (A:0-96) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure