Citrus Sinensis ID: 016623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHcccEEEccccccccEEEEccccccccHHHHEEcccccEEEEEEEcccccccccccHccccccccccHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mvprqfiglgpsaetdhevsncssdeertlsgtppniveAASKehvnsngkneivsFDDQAAAAAAAENsngkrigreespesetqgwgpnnkvqklssakgidqsneATMRKARVSVrarseapmitdgcqwrkygqkmakgnpcprayyrctmavgcpvrkqvqrCAEDRTILITtyegnhnhplppaamAMASTTTAAASMLLSgsmssadgimnpnlLARAilpcsssmatisasapfptvtldlthspnplqLQRQAAQFQvqfpgqpqnlasvtntqlpqvFGQALynqskfsglqlsqnigsnsqsgshqtlppplqqpqqLADTVSAATAAITADPNFTAALAAAITSIIggaqnpfsnnsnnnnrsciiftnfffqy
Flexible Loop (DISEMBL)
mvprqfiglgpsaetdhevsnCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAensngkrigreespesetqgwgpnnkvqklssakgidqsneatmrkarvsvrarseapmitdgcqwrkygqKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNpfsnnsnnnnrsCIIFTNFFFQY
Low Complexity Region (SEG)
MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQaaaaaaaENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHplppaamamastttaaasmllsgsmssaDGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPlqlqrqaaqfqvqfPGQPQNLASVTNTQLPQVFGQALYNQSKFSGlqlsqnigsnsqsgsHQTlppplqqpqqlADTVSAATAAITADPNFtaalaaaitsiiggaQNPFsnnsnnnnRSCIIFTNFFFQY
Disordered region (IsUnstruct)
*****************************************************************************************************************************MITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGN************************************PNLLARAILPCSSSMATI*****FPTVTL***********************************QLPQVFGQALYN*****************************************ATAAITADPNFTAALAAAITSIIGGAQN*********NRSCIIFTNFFF**
Disordered Region (DISOPRED)
MVPRQFIG*************************************************************************************************************VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP**************************************************************************************************************************************************VSAATAAITADPNFTAALAAAITS***********************TNFFFQY
Disordered Region (DISEMBL)
MVPRQFIGLGPS*******************GTPPNIVEAASKEHVNSNGKNEIVSFDDQ*****************************PNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQN****************************AATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
Disordered Region (DISPRO)
**************************************************************************************************************MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH*L*******************************************S******ASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGS********************ADTVSAATAAITADPNFTAALAAAITSIIGG***************CIIFTNFFFQY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
Q9XEC3	528	Probable WRKY transcripti	yes	no	0.784	0.573	0.584	1e-101
Q9C519	553	WRKY transcription factor	no	no	0.834	0.582	0.591	1e-100
Q93WT0	538	Probable WRKY transcripti	no	no	0.810	0.581	0.587	1e-81
Q9ZSI7	489	Probable WRKY transcripti	no	no	0.518	0.408	0.494	2e-49
Q9LXG8	548	Probable WRKY transcripti	no	no	0.712	0.501	0.408	2e-45
Q9C9F0	374	Probable WRKY transcripti	no	no	0.269	0.278	0.694	5e-40
Q8VWV6	480	Probable WRKY transcripti	no	no	0.629	0.506	0.430	6e-40
Q9CAR4	387	Probable WRKY transcripti	no	no	0.391	0.390	0.522	8e-34
Q8S8P5	519	Probable WRKY transcripti	no	no	0.233	0.173	0.505	5e-23
Q93WV0	557	Probable WRKY transcripti	no	no	0.199	0.138	0.551	2e-21

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/380 (58%), Positives = 251/380 (66%), Gaps = 77/380 (20%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERTL--SGTPPNIVEAASKEHVNSNGKNEIVSFD 58
           MVPRQFI LGP ++   EVS+    EERT   SG+PP+++E +S                
Sbjct: 179 MVPRQFIDLGPHSD---EVSS----EERTTVRSGSPPSLLEKSSSRQ------------- 218

Query: 59  DQAAAAAAAENSNGKRI-GREESPESETQGWGPNNKVQKL--------------SSAKGI 103
                       NGKR+  REESPE+E+ GW   NKV K               +S+K I
Sbjct: 219 ------------NGKRVLVREESPETESNGWRNPNKVPKHHASSSICGGNGSENASSKVI 266

Query: 104 DQ-SNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR 162
           +Q + EATMRKARVSVRARSEAPM++DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR
Sbjct: 267 EQAAAEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR 326

Query: 163 KQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGS-MSSADGIMNP-N 220
           KQVQRCAEDRTILITTYEGNHNHPLPPAAM MASTTTAAASMLLSGS MS+ DG+MNP N
Sbjct: 327 KQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTN 386

Query: 221 LLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVT 280
           LLAR ILPCSSSMATISASAPFPT+TLDLT S              +QF  Q   L  + 
Sbjct: 387 LLARTILPCSSSMATISASAPFPTITLDLTES---PNGNNPTNNPLMQF-SQRSGLVELN 442

Query: 281 NTQLPQVFGQALY--NQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATA 338
            + LP + GQALY   QSKFSGL +                     QP    ++VSAATA
Sbjct: 443 QSVLPHMMGQALYYNQQSKFSGLHMP-------------------SQPLNAGESVSAATA 483

Query: 339 AITADPNFTAALAAAITSII 358
           AI ++PNF AALAAAITSII
Sbjct: 484 AIASNPNFAAALAAAITSII 503

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/387 (59%), Positives = 261/387 (67%), Gaps = 65/387 (16%)

Query: 1   MVPRQFIGLGPSAETDH--EVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFD 58
           +VPRQFI LGP+       +VSN SS E+RT SG                          
Sbjct: 217 IVPRQFIDLGPTRAVGEAEDVSNSSS-EDRTRSG-------------------------- 249

Query: 59  DQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAK--GIDQSNEATMRKARV 116
               ++AA   SNGKR+GREESPE+E+      NK+QK++S      DQ+ EATMRKARV
Sbjct: 250 ---GSSAAERRSNGKRLGREESPETES------NKIQKVNSTTPTTFDQTAEATMRKARV 300

Query: 117 SVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILI 176
           SVRARSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILI
Sbjct: 301 SVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILI 360

Query: 177 TTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNP-NLLARAILPCSSSMAT 235
           TTYEGNHNHPLPPAA+AMASTTTAAA+MLLSGSMSS DG+MNP NLLARA+LPCS+SMAT
Sbjct: 361 TTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMAT 420

Query: 236 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQ--------VQFP-GQPQNLASVTNTQLPQ 286
           ISASAPFPTVTLDLTHSP P      ++           +Q P  Q Q + ++    LP 
Sbjct: 421 ISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPH 480

Query: 287 VFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNF 346
           V GQALYNQSKFSGLQ S         GS  T      Q   +ADT++    A+TADPNF
Sbjct: 481 VIGQALYNQSKFSGLQFS--------GGSPST--AAFSQSHAVADTIT----ALTADPNF 526

Query: 347 TAALAAAITSIIGGAQNPFSNNSNNNN 373
           TAALAA I+S+I G  N      NN N
Sbjct: 527 TAALAAVISSMINGT-NHHDGEGNNKN 552

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 226/385 (58%), Positives = 255/385 (66%), Gaps = 72/385 (18%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERTL-SGTPPNIVEAASKEHVNSNGKNEIVSFDD 59
           MVPRQF+ LGPS+      +  SS+E  T+ SG+PP+++E+++                 
Sbjct: 181 MVPRQFMDLGPSSGAAEHGAEVSSEERTTVRSGSPPSLLESSNPRE-------------- 226

Query: 60  QAAAAAAAENSNGKRI-GREESPESETQ-GWGPNNKVQKLSSAKG----------IDQSN 107
                      NGKR+ GREES E      WG  NKV K + +            IDQS 
Sbjct: 227 -----------NGKRLLGREESSEESESNAWGNPNKVPKHNPSSSNSNGNRNGNVIDQSA 275

Query: 108 -EATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQ 166
            EATMRKARVSVRARSEA MI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQ
Sbjct: 276 AEATMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQ 335

Query: 167 RCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNP-NLLARA 225
           RCAEDR+ILITTYEGNHNHPLPPAA AMASTTTAAASMLLSGSMSS DG+MNP NLLARA
Sbjct: 336 RCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARA 395

Query: 226 ILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLP 285
           ILPCSSSMATISASAPFPT+TLDLT+SPN            +QF  +P    +V    LP
Sbjct: 396 ILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAV----LP 451

Query: 286 QVFGQALYN---QSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADT------VSAA 336
           QV GQA+YN   QSKFSGLQL                     QP Q+A T      VSAA
Sbjct: 452 QVVGQAMYNNQQQSKFSGLQLP-------------------AQPLQIAATSSVAESVSAA 492

Query: 337 TAAITADPNFTAALAAAITSIIGGA 361
           +AAI +DPNF AALAAAITSI+ G+
Sbjct: 493 SAAIASDPNFAAALAAAITSIMNGS 517

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 156/265 (58%), Gaps = 65/265 (24%)

Query: 112 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 171
           RKARVSVRARS+A  + DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED
Sbjct: 223 RKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 282

Query: 172 RTILITTYEGNHNHPLPPAAMAMASTTTAAAS------------MLLSGSMSSADGIMNP 219
            TIL TTYEGNHNHPLPP+A AMA+TT+AAA+              LS   +++      
Sbjct: 283 TTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYH 342

Query: 220 NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQF------PGQP 273
           N       P +S++AT+SASAPFPT+TLDLT   NP +  +   QF  Q+      P   
Sbjct: 343 NF------PYTSTIATLSASAPFPTITLDLT---NPPRPLQPPPQFLSQYGPAAFLPNAN 393

Query: 274 QNLASVTNTQ---LPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLA 330
           Q  +   N Q   +P +FG                                P   P+++ 
Sbjct: 394 QIRSMNNNNQQLLIPNLFG--------------------------------PQAPPREMV 421

Query: 331 DTVSAATAAITADPNFTAALAAAIT 355
           D+V AA   I  DPNFTAALAAAI+
Sbjct: 422 DSVRAA---IAMDPNFTAALAAAIS 443

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 186/333 (55%), Gaps = 58/333 (17%)

Query: 86  QGWGPNNKVQKLSS---AKGIDQSNEA----TMRKARVSVRARSEAPMITDGCQWRKYGQ 138
           + W P     K SS   A G D   EA     +++ARV VRAR + P + DGCQWRKYGQ
Sbjct: 178 EAWAPGKVTGKRSSPAPASGGDADGEAGQQNHVKRARVCVRARCDTPTMNDGCQWRKYGQ 237

Query: 139 KMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTT 198
           K+AKGNPCPRAYYRCT+A GCPVRKQVQRCA+D +ILITTYEG H+H LP +A  MASTT
Sbjct: 238 KIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMASTT 297

Query: 199 TAAASMLLSGSMSS-ADGIMNPNLLARAILPCSS-SMATISASAPF-PTVTLDLT----- 250
           +AAASMLLSGS SS A  ++  NL   +    ++ S  + +  +P  PTVTLDLT     
Sbjct: 298 SAAASMLLSGSSSSPAAEMIGNNLYDNSRFNNNNKSFYSPTLHSPLHPTVTLDLTAPQHS 357

Query: 251 ----HSPNPLQLQRQAAQFQVQFP-------GQPQNLASVTNTQLPQVFGQAL--YNQSK 297
                S   L   + +  FQ +FP             ++ +   LP ++G     Y    
Sbjct: 358 SSSSSSLLSLNFNKFSNSFQ-RFPSTSLNFSSTSSTSSNPSTLNLPAIWGNGYSSYTPYP 416

Query: 298 FSGLQL-SQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITS 356
           ++ +Q  + N+G              +Q  Q L +T+   T A+T+DP+F + +AAAI++
Sbjct: 417 YNNVQFGTSNLGKT------------VQNSQSLTETL---TKALTSDPSFHSVIAAAIST 461

Query: 357 IIG--------GAQNPFSN-----NSNNNNRSC 376
           ++G        G ++  SN     N+ NNN+ C
Sbjct: 462 MVGSNGEQQIVGPRHSISNNIQQTNTTNNNKGC 494

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  165 bits (418), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 84/108 (77%), Gaps = 4/108 (3%)

Query: 112 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 171
           RKARVSVRAR E   + DGCQWRKYGQK AKGNPCPRAYYRCT+A GCPVRKQVQRC ED
Sbjct: 219 RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLED 278

Query: 172 RTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNP 219
            +ILITTYEG HNHPLP  A AMAST + +  +LL     S+D + +P
Sbjct: 279 MSILITTYEGTHNHPLPVGATAMASTASTSPFLLL----DSSDNLSHP 322

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score =  165 bits (417), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 167/297 (56%), Gaps = 54/297 (18%)

Query: 111 MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAE 170
           ++K RVSVR+R E P + DGCQWRKYGQK+AKGNPCPRAYYRCT+A  CPVRKQVQRC+E
Sbjct: 174 VKKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSE 233

Query: 171 DRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGI-----MNPNLLARA 225
           D +ILI+TYEG HNHPLP +A AMAS T+AAASMLLSG+ SS+        +N +L    
Sbjct: 234 DMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHGLNFSLSGNN 293

Query: 226 ILPCSSSMATIS-ASAPFPTVTLDLTHSPNPLQ-----LQRQAA-----QFQVQFPGQPQ 274
           I P   +    S +S+  PTVTLDLT S +  Q     L R ++          +P    
Sbjct: 294 ITPKPKTHFLQSPSSSGHPTVTLDLTTSSSSQQPFLSMLNRFSSPPSNVSRSNSYPSTNL 353

Query: 275 NLASVTNT------------QLPQVFGQA-LYNQSKFSGLQLSQNIGSN-----SQSGSH 316
           N ++ TNT            Q    +G    + QS +  +  ++  GS+       S SH
Sbjct: 354 NFSNNTNTLMNWGGGGNPSDQYRAAYGNINTHQQSPYHKIIQTRTAGSSFDPFGRSSSSH 413

Query: 317 QTLPPPL-------------QQPQQLADTVSAATAAITADPNFTAALAAAITSIIGG 360
               P +             Q P   A+T+     AIT DP+F +ALA A++SI+GG
Sbjct: 414 S---PQINLDHIGIKNIISHQVPSLPAETI----KAITTDPSFQSALATALSSIMGG 463

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR4|WRK36_ARATH Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1

 Score =  144 bits (364), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 102/157 (64%), Gaps = 6/157 (3%)

Query: 103 IDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR 162
           +++  +  ++K RV V+A  E P I DGCQWRKYGQK AK NP PRAYYRC+M+  CPVR
Sbjct: 178 LEEHEQTGLKKTRVCVKASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVR 237

Query: 163 KQVQRCAEDRT-ILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNL 221
           KQVQRC E+ T   +TTYEGNH+HPLP  A  MA+ T+AAAS+L SGS SS+    + + 
Sbjct: 238 KQVQRCGEEETSAFMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSS---SSTSA 294

Query: 222 LARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQL 258
                 P      +IS +   PTVTLDLT    P QL
Sbjct: 295 SLSYFFPFHH--FSISTTNSHPTVTLDLTRPNYPNQL 329

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 110 TMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCA 169
           T+R+ R+ V+  S+  ++ DG +WRKYGQK+ KGNP PR+YY+CT  +GCPVRK V+R +
Sbjct: 344 TVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-TIGCPVRKHVERAS 402

Query: 170 EDRTILITTYEGNHNHPLPPAAMAMASTTTA 200
            D   +ITTYEG HNH +P A  +  +T  A
Sbjct: 403 HDMRAVITTYEGKHNHDVPAARGSGYATNRA 433

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%), Gaps = 1/78 (1%)

Query: 111 MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAE 170
           +R+ RV V+  SE  ++ DG +WRKYGQK+ +GNP PR+YY+CT A GCPVRK V+R + 
Sbjct: 364 IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT-AHGCPVRKHVERASH 422

Query: 171 DRTILITTYEGNHNHPLP 188
           D   +ITTYEG H+H +P
Sbjct: 423 DPKAVITTYEGKHDHDVP 440

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
255554813	580	WRKY transcription factor, putative [Ric	0.888	0.591	0.787	1e-139
259121421	602	WRKY transcription factor 28 [(Populus t	0.898	0.576	0.760	1e-131
224118042	578	predicted protein [Populus trichocarpa]	0.857	0.572	0.760	1e-131
225444291	535	PREDICTED: WRKY transcription factor 6-l	0.878	0.633	0.682	1e-128
147779800	535	hypothetical protein VITISV_002247 [Viti	0.836	0.603	0.709	1e-128
209867508	556	WRKY transcription factor [Picrorhiza ku	0.875	0.607	0.65	1e-124
356547095	614	PREDICTED: WRKY transcription factor 6 [	0.930	0.584	0.639	1e-123
147841888	620	hypothetical protein VITISV_024690 [Viti	0.886	0.551	0.663	1e-123
359485613	593	PREDICTED: WRKY transcription factor 6-l	0.886	0.576	0.663	1e-123
224115798	540	predicted protein [Populus trichocarpa]	0.883	0.631	0.766	1e-122

>gi|255554813|ref|XP_002518444.1| WRKY transcription factor, putative [Ricinus communis] gi|223542289|gb|EEF43831.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/362 (78%), Positives = 304/362 (83%), Gaps = 19/362 (5%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQ 60
           +VPRQF+ LGPSAETD E+S+ SSD+ERT SGTP    E AS   V +NGK E+ +FD +
Sbjct: 217 VVPRQFLDLGPSAETD-EISHSSSDDERTRSGTPQTNTETAS---VKNNGKIEMSTFDQE 272

Query: 61  AAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSA-KGIDQSNEATMRKARVSVR 119
            ++       +GK IGREESPESETQGW PN KVQKL+ A KGIDQ+ EATMRKARVSVR
Sbjct: 273 NSSF-----RDGKGIGREESPESETQGWNPN-KVQKLNPASKGIDQNAEATMRKARVSVR 326

Query: 120 ARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTY 179
           ARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED +ILITTY
Sbjct: 327 ARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTSILITTY 386

Query: 180 EGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISAS 239
           EGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISAS
Sbjct: 387 EGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISAS 446

Query: 240 APFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFS 299
           APFPTVTLDLTHSPNPLQ+QR    FQV FPGQPQN ASVT  QLPQVFGQALYNQSKFS
Sbjct: 447 APFPTVTLDLTHSPNPLQVQRPPTHFQVPFPGQPQNFASVTPQQLPQVFGQALYNQSKFS 506

Query: 300 GLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIG 359
           GLQLSQ +  + Q      L P   Q   L D+VSAATAAITADPNFTAALAAAITSIIG
Sbjct: 507 GLQLSQELPQSQQ------LHP--SQQHSLVDSVSAATAAITADPNFTAALAAAITSIIG 558

Query: 360 GA 361
           G 
Sbjct: 559 GG 560

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121421|gb|ACV92030.1| WRKY transcription factor 28 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/368 (76%), Positives = 301/368 (81%), Gaps = 21/368 (5%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQ 60
           MVPRQF+ LGPSAETD E+SN SS EERT S TP N  E AS     +NGK E+V  D +
Sbjct: 222 MVPRQFMDLGPSAETD-EISNSSS-EERTRSVTPQNHFEVAS---TKNNGKLEMVPHDQE 276

Query: 61  AAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSA----KGIDQSNEATMRKARV 116
            ++        GKR G +ESPESE+QGW PN KVQKL+ A    K I+QS EATMRKARV
Sbjct: 277 NSSFRG-----GKRFGGDESPESESQGWNPN-KVQKLNPATPANKAIEQSAEATMRKARV 330

Query: 117 SVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILI 176
           SVRARSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED+TILI
Sbjct: 331 SVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILI 390

Query: 177 TTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILP-CSSSMAT 235
           TTYEGNHNHPLPPAAM MASTTTAAA+MLLSGSMSSADG+MNPNLLARAILP CSSSMAT
Sbjct: 391 TTYEGNHNHPLPPAAMTMASTTTAAATMLLSGSMSSADGMMNPNLLARAILPGCSSSMAT 450

Query: 236 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQ 295
           ISASAPFPTVTLDLT + NPLQ Q+   QFQV FPGQPQN A VT  QLPQVFGQALYNQ
Sbjct: 451 ISASAPFPTVTLDLTQNTNPLQFQKPPTQFQVPFPGQPQNFALVTAPQLPQVFGQALYNQ 510

Query: 296 SKFSGLQLSQNIGSNSQSGSHQTLPPPL---QQPQQLADTVSAATAAITADPNFTAALAA 352
           S+FSGLQLSQ+IGS SQ G HQ  P      QQP    DT+SAATAAITADPNFTAALAA
Sbjct: 511 SEFSGLQLSQDIGS-SQLG-HQAQPQIFHSGQQPSLSHDTLSAATAAITADPNFTAALAA 568

Query: 353 AITSIIGG 360
           AI+SIIGG
Sbjct: 569 AISSIIGG 576

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118042|ref|XP_002331543.1| predicted protein [Populus trichocarpa] gi|222873767|gb|EEF10898.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/368 (76%), Positives = 296/368 (80%), Gaps = 37/368 (10%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQ 60
           MVPRQF+ LGPSAETD E+SN SS EERT S TP N  EAAS                  
Sbjct: 213 MVPRQFMDLGPSAETD-EISNSSS-EERTRSVTPQNHFEAAS------------------ 252

Query: 61  AAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKL----SSAKGIDQSNEATMRKARV 116
                  +N++GKRIG +ESPESE QGW PN KVQKL    S+ K I+QS EATMRKARV
Sbjct: 253 ------TKNNDGKRIGGDESPESELQGWNPN-KVQKLNPASSANKAIEQSAEATMRKARV 305

Query: 117 SVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILI 176
           SVRARSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED+TILI
Sbjct: 306 SVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILI 365

Query: 177 TTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILP-CSSSMAT 235
           TTYEGNHNHPLPPAAM MASTTTAAA+MLLSGSMSSADG+MNPNLLARAILP CSSSMAT
Sbjct: 366 TTYEGNHNHPLPPAAMTMASTTTAAATMLLSGSMSSADGMMNPNLLARAILPGCSSSMAT 425

Query: 236 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQ 295
           ISASAPFPTVTLDLT + NPLQ QR   QFQV FPGQPQN A VT  QLPQVFGQALYNQ
Sbjct: 426 ISASAPFPTVTLDLTQNTNPLQFQRPPTQFQVPFPGQPQNFALVTAPQLPQVFGQALYNQ 485

Query: 296 SKFSGLQLSQNIGSNSQSGSHQTLPP---PLQQPQQLADTVSAATAAITADPNFTAALAA 352
           SKFSGLQLSQ+IGS SQ G HQ  P    P QQP    DT+SAATAAITADPNFTAALAA
Sbjct: 486 SKFSGLQLSQDIGS-SQLG-HQAQPQIFHPGQQPSLSHDTLSAATAAITADPNFTAALAA 543

Query: 353 AITSIIGG 360
           AI+SIIGG
Sbjct: 544 AISSIIGG 551

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444291|ref|XP_002263115.1| PREDICTED: WRKY transcription factor 6-like [Vitis vinifera]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 265/388 (68%), Positives = 287/388 (73%), Gaps = 49/388 (12%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKEHVNSNGKNEIVSFD 58
           +VPRQFI LGP+A  D +  + SS EERT  LSG+P N  E                   
Sbjct: 179 VVPRQFIDLGPTATADTDEPSQSSSEERTRDLSGSPQNHQE------------------- 219

Query: 59  DQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSV 118
                       NGK  GREESPESETQGW   NK  KLS  K IDQS EATMRKARVSV
Sbjct: 220 ------------NGKGAGREESPESETQGW-VQNKASKLSPPKTIDQSAEATMRKARVSV 266

Query: 119 RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITT 178
           RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDR+ILITT
Sbjct: 267 RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITT 326

Query: 179 YEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISA 238
           YEG HNHPLPPAAMAMASTT+AAA+MLLSGSMSSADG+MNPN LAR ILPCSS+MATISA
Sbjct: 327 YEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFLARTILPCSSNMATISA 386

Query: 239 SAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKF 298
           SAPFPTVTLDLTH+P+PLQ QR  +QF V F    Q+  S   + LPQVF QALYNQSKF
Sbjct: 387 SAPFPTVTLDLTHTPSPLQYQRPTSQFPVPFAAPAQSFPSAQTSSLPQVFSQALYNQSKF 446

Query: 299 SGLQLSQNIGSNSQSGSHQTLPPPLQQPQ--QLADTVSAATAAITADPNFTAALAAAITS 356
           SGLQLSQ++ S     +HQ  PP L QPQ   LADTVSAATAAITADPNFTAALAAAITS
Sbjct: 447 SGLQLSQDMES-----AHQA-PPTLHQPQPASLADTVSAATAAITADPNFTAALAAAITS 500

Query: 357 IIGGAQ-------NPFSNNSNNNNRSCI 377
           IIGG         N  SN +N++N + I
Sbjct: 501 IIGGGAAHPNTTINSTSNATNSSNTNKI 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779800|emb|CAN70362.1| hypothetical protein VITISV_002247 [Vitis vinifera]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/365 (70%), Positives = 277/365 (75%), Gaps = 42/365 (11%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKEHVNSNGKNEIVSFD 58
           +VPRQFI LGP+A  D +  + SS EERT  LSG+P N  E                   
Sbjct: 179 VVPRQFIDLGPTATADTDEPSQSSSEERTRDLSGSPQNHQE------------------- 219

Query: 59  DQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSV 118
                       NGK  GREESPESETQGW   NK  KLS  K IDQS EATMRKARVSV
Sbjct: 220 ------------NGKGAGREESPESETQGW-VQNKASKLSPPKTIDQSAEATMRKARVSV 266

Query: 119 RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITT 178
           RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDR+ILITT
Sbjct: 267 RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITT 326

Query: 179 YEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISA 238
           YEG HNHPLPPAAMAMASTT+AAA+MLLSGSMSSADG+MNPN LAR ILPCSS+MATISA
Sbjct: 327 YEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFLARTILPCSSNMATISA 386

Query: 239 SAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKF 298
           SAPFPTVTLDLTH+P+PLQ QR  +QF V F    Q+  S   + LPQVF QALYNQSKF
Sbjct: 387 SAPFPTVTLDLTHTPSPLQYQRPTSQFPVPFAAPAQSFPSAQTSSLPQVFSQALYNQSKF 446

Query: 299 SGLQLSQNIGSNSQSGSHQTLPPPLQQPQ--QLADTVSAATAAITADPNFTAALAAAITS 356
           SGLQLSQ++ S     +HQ  PP L QPQ   LADTVSAATAAITADPNFTAALAAAITS
Sbjct: 447 SGLQLSQDMES-----AHQA-PPTLHQPQPASLADTVSAATAAITADPNFTAALAAAITS 500

Query: 357 IIGGA 361
           IIGG 
Sbjct: 501 IIGGG 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209867508|gb|ACI90292.1| WRKY transcription factor [Picrorhiza kurrooa]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/380 (65%), Positives = 272/380 (71%), Gaps = 42/380 (11%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQ 60
           M+PRQF+ L PSA TD + +  SS EERTLSG+P N VE                     
Sbjct: 195 MIPRQFMDLAPSAATDEQTN--SSSEERTLSGSPHNTVEV-------------------- 232

Query: 61  AAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRA 120
                    S  KR GRE+SPESE   WGPN K  K+S  K +DQS EA+MRK RVSVRA
Sbjct: 233 ---------SRNKRTGREDSPESE--AWGPN-KAPKMSPPKPVDQSAEASMRKVRVSVRA 280

Query: 121 RSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYE 180
           RSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDR ILITTYE
Sbjct: 281 RSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRAILITTYE 340

Query: 181 GNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASA 240
           G HNHPLPPAA+AMAS T+AAASMLLSGSM SADG+MNPN LAR I PCSS+MATISASA
Sbjct: 341 GTHNHPLPPAAVAMASITSAAASMLLSGSMPSADGMMNPNFLARTIFPCSSNMATISASA 400

Query: 241 PFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSG 300
           P PTVTLDLT +PNPLQ QR    FQV FPG   N   + N   PQVFGQALYNQSKFSG
Sbjct: 401 P-PTVTLDLTQNPNPLQFQRPPNPFQVPFPGSSHNFGPIPNANAPQVFGQALYNQSKFSG 459

Query: 301 LQLSQNIGSNSQSGSHQTLPPPLQQPQ-----QLADTVSAATAAITADPNFTAALAAAIT 355
           LQ+SQ+I   +Q     +  P + Q Q       ADT+SAATAAITADPNF AALAAAI+
Sbjct: 460 LQMSQDIDEAAQLLRQSSQQPQVHQAQAQAHPSFADTLSAATAAITADPNFMAALAAAIS 519

Query: 356 SIIGGAQNP--FSNNSNNNN 373
           SI GG   P   +NNS+ NN
Sbjct: 520 SIFGGGSQPSIANNNSSPNN 539

Source: Picrorhiza kurrooa

Species: Picrorhiza kurrooa

Genus: Picrorhiza

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547095|ref|XP_003541953.1| PREDICTED: WRKY transcription factor 6 [Glycine max]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/383 (63%), Positives = 280/383 (73%), Gaps = 24/383 (6%)

Query: 1   MVPRQF--IGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFD 58
           +VPRQF  +GL  +A+T+    + SS   R+    P N  E ASK+  N    +E + FD
Sbjct: 242 LVPRQFMDLGLATNADTNETSHSHSSSVIRSQDSPPTNNTEVASKK--NGGASDEGLVFD 299

Query: 59  DQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSV 118
                    +   G+ I RE+SP    QG   NN V K S  + +DQ+ EATMRKARVSV
Sbjct: 300 QD-------KKEFGRGIEREDSPSD--QGVAANNNVPKFSPPRNVDQA-EATMRKARVSV 349

Query: 119 RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITT 178
           RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDRTILITT
Sbjct: 350 RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITT 409

Query: 179 YEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISA 238
           YEGNHNHPLPPAAMAMA TT++AA MLLSGSMSSADG+MN + L R +LPCSSSMATISA
Sbjct: 410 YEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNASFLTRTLLPCSSSMATISA 469

Query: 239 SAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKF 298
           SAPFPTVTLDLT SPNPLQ  +Q +QFQ+ FPG PQN A+   + LPQ+FGQALYNQSKF
Sbjct: 470 SAPFPTVTLDLTQSPNPLQFPKQPSQFQIPFPGVPQNFANSQASLLPQIFGQALYNQSKF 529

Query: 299 SGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSII 358
           SGLQ+SQ+    SQ  +    PPP      LADTVS   AAI ADPNFTAALAAAITSII
Sbjct: 530 SGLQMSQD-SDPSQLSNQSQRPPP-----HLADTVS---AAIAADPNFTAALAAAITSII 580

Query: 359 GGAQNPFSNNSNNNNRSCIIFTN 381
           GGAQ P +N++ + N +    TN
Sbjct: 581 GGAQ-PNNNSTTSTNYNGTTSTN 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841888|emb|CAN65218.1| hypothetical protein VITISV_024690 [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/369 (66%), Positives = 276/369 (74%), Gaps = 27/369 (7%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKE-HVNSNGKNEIVSF 57
           +VPRQFI LG +A+ + E  + SS E R+   SG+P N  E  SKE  +  N K E  S 
Sbjct: 227 VVPRQFIDLGLAAKAEVEEPSLSSSEGRSGDRSGSPINNGEVGSKELELRKNEKKEYSS- 285

Query: 58  DDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVS 117
                            IGREESP+  +Q WG N KV +L+ +K +DQ+ EATMRKARVS
Sbjct: 286 ----------------GIGREESPDQGSQ-WGAN-KVPRLNPSKNVDQT-EATMRKARVS 326

Query: 118 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 177
           VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILIT
Sbjct: 327 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILIT 386

Query: 178 TYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATIS 237
           TYEGNHNHPLPPAAMAMASTT++AA MLLSGSM SADG+MN N LAR +LPCSSSMATIS
Sbjct: 387 TYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMPSADGLMNSNFLARTVLPCSSSMATIS 446

Query: 238 ASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLA----SVTNTQLPQVFGQALY 293
           ASAPFPTVTLDLT +PNPLQ QR  +QF V  P   QNLA    +  ++ LPQ+F QALY
Sbjct: 447 ASAPFPTVTLDLTQNPNPLQFQRPPSQFXVPSPNPXQNLAGPAAATPSSLLPQIFNQALY 506

Query: 294 NQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAA 353
           NQSKFSGLQ+SQ++ +      HQ       Q   LA+TVSAATAAITADPNFTAALAAA
Sbjct: 507 NQSKFSGLQMSQDMEAAQLPTHHQPSSQQQSQQNSLAETVSAATAAITADPNFTAALAAA 566

Query: 354 ITSIIGGAQ 362
           ITSIIGGAQ
Sbjct: 567 ITSIIGGAQ 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485613|ref|XP_002269696.2| PREDICTED: WRKY transcription factor 6-like [Vitis vinifera]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/369 (66%), Positives = 276/369 (74%), Gaps = 27/369 (7%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKE-HVNSNGKNEIVSF 57
           +VPRQFI LG +A+ + E  + SS E R+   SG+P N  E  SKE  +  N K E  S 
Sbjct: 200 VVPRQFIDLGLAAKAEVEEPSLSSSEGRSGDRSGSPINNGEVGSKELELRKNEKKEYSS- 258

Query: 58  DDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVS 117
                            IGREESP+  +Q WG N KV +L+ +K +DQ+ EATMRKARVS
Sbjct: 259 ----------------GIGREESPDQGSQ-WGAN-KVPRLNPSKNVDQT-EATMRKARVS 299

Query: 118 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 177
           VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILIT
Sbjct: 300 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILIT 359

Query: 178 TYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATIS 237
           TYEGNHNHPLPPAAMAMASTT++AA MLLSGSM SADG+MN N LAR +LPCSSSMATIS
Sbjct: 360 TYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMPSADGLMNSNFLARTVLPCSSSMATIS 419

Query: 238 ASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLA----SVTNTQLPQVFGQALY 293
           ASAPFPTVTLDLT +PNPLQ QR  +QF V  P   QNLA    +  ++ LPQ+F QALY
Sbjct: 420 ASAPFPTVTLDLTQNPNPLQFQRPPSQFYVPSPNPTQNLAGPAAATPSSLLPQIFNQALY 479

Query: 294 NQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAA 353
           NQSKFSGLQ+SQ++ +      HQ       Q   LA+TVSAATAAITADPNFTAALAAA
Sbjct: 480 NQSKFSGLQMSQDMEAAQLPTHHQPSSQQQSQQNSLAETVSAATAAITADPNFTAALAAA 539

Query: 354 ITSIIGGAQ 362
           ITSIIGGAQ
Sbjct: 540 ITSIIGGAQ 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115798|ref|XP_002317127.1| predicted protein [Populus trichocarpa] gi|222860192|gb|EEE97739.1| predicted protein [Populus trichocarpa]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 282/368 (76%), Positives = 302/368 (82%), Gaps = 27/368 (7%)

Query: 1   MVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQ 60
           +VPRQF+ LGPSAETD E+SN SSDE RT SGTP N +E AS +   +NGK   + +D +
Sbjct: 171 VVPRQFMDLGPSAETD-ELSNSSSDE-RTRSGTPQNHIEVASPK---NNGK---LPYDQE 222

Query: 61  AAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSA----KGIDQSNEATMRKARV 116
            ++       +GKRIGREESPESE+Q W    KVQK   A    K I+QS EATMRKARV
Sbjct: 223 NSSF-----RDGKRIGREESPESESQAW----KVQKTDPASPANKAIEQSTEATMRKARV 273

Query: 117 SVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILI 176
           SVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILI
Sbjct: 274 SVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILI 333

Query: 177 TTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPC-SSSMAT 235
           TTYEGNHNHPLPPAAMAMASTT AAASMLLSGSMSSADGIMNPNLLARAILP  SS+MAT
Sbjct: 334 TTYEGNHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNPNLLARAILPAGSSNMAT 393

Query: 236 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQ 295
           ISASAPFPTVTLDLTH+PNPLQ QR   QFQV FPGQPQN +SVT  QLPQVFGQALYNQ
Sbjct: 394 ISASAPFPTVTLDLTHNPNPLQFQRPPPQFQVPFPGQPQNFSSVTTPQLPQVFGQALYNQ 453

Query: 296 SKFSGLQLSQNIGSNSQSGSHQTLPPPL---QQPQQLADTVSAATAAITADPNFTAALAA 352
           SKFSGLQLSQ IG+  Q G HQ  P  L   QQP    DT+SAATAAITADPNFTAALAA
Sbjct: 454 SKFSGLQLSQEIGT-PQLG-HQAQPHLLHSGQQPSLSQDTLSAATAAITADPNFTAALAA 511

Query: 353 AITSIIGG 360
           AI+SIIGG
Sbjct: 512 AISSIIGG 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TAIR|locus:2018052	553	WRKY6 [Arabidopsis thaliana (t	0.665	0.464	0.560	1.7e-78
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.722	0.528	0.537	2.3e-74
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.787	0.565	0.510	7.5e-73
TAIR|locus:2133432	489	WRKY47 [Arabidopsis thaliana (	0.422	0.333	0.523	4.1e-45
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.621	0.5	0.362	5.7e-36
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.471	0.332	0.435	3.2e-33
TAIR|locus:2199317	374	WRKY9 "WRKY DNA-binding protei	0.290	0.299	0.610	2.6e-31
TAIR|locus:2196779	387	WRKY36 "WRKY DNA-binding prote	0.440	0.439	0.393	3.3e-30
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.422	0.314	0.368	2.3e-22
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.272	0.301	0.447	1.1e-21

TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 162/289 (56%), Positives = 178/289 (61%)

Query:    70 SNGKRIGREESPESETQGWGPNNKVQKLSSAKG--IDQSNEATMRKARVSVRARSEAPMI 127
             SNGKR+GREESPE+E+      NK+QK++S      DQ+ EATMRKARVSVRARSEAPMI
Sbjct:   258 SNGKRLGREESPETES------NKIQKVNSTTPTTFDQTAEATMRKARVSVRARSEAPMI 311

Query:   128 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXX 187
             +DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILITTYEGNHNH  
Sbjct:   312 SDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPL 371

Query:   188 XXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMATISASAPFPTVT 246
                                       DG+MNP NLLARA+LPCS+SMATISASAPFPTVT
Sbjct:   372 PPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVT 431

Query:   247 LDLTHSP------NPXXXXXXXXXXXXXXPGQPQNLASVTNT---QLPQVFGQALYNQSK 297
             LDLTHSP      NP                  Q    +TN     LP V GQALYNQSK
Sbjct:   432 LDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSK 491

Query:   298 FSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATAAITADPNF 346
             FSG                             ADT++A    +TADPNF
Sbjct:   492 FSGLQFSGGS----------PSTAAFSQSHAVADTITA----LTADPNF 526

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
 Identities = 165/307 (53%), Positives = 190/307 (61%)

Query:     1 MVPRQFIGLGPSAETDHEVSNCSSDEERTL--SGTPPNIVEAASKEHVNSNGKNEIVSFD 58
             MVPRQFI LGP ++   EVS+    EERT   SG+PP+++E +S      NGK  +V  +
Sbjct:   179 MVPRQFIDLGPHSD---EVSS----EERTTVRSGSPPSLLEKSSSRQ---NGKRVLVREE 228

Query:    59 DQXXXXXXXENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSN-EATMRKARVS 117
                       N N  ++ +  +  S   G G  N     +S+K I+Q+  EATMRKARVS
Sbjct:   229 SPETESNGWRNPN--KVPKHHASSSICGGNGSEN-----ASSKVIEQAAAEATMRKARVS 281

Query:   118 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 177
             VRARSEAPM++DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT
Sbjct:   282 VRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 341

Query:   178 TYEGNHNHXXX-XXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMAT 235
             TYEGNHNH                             DG+MNP NLLAR ILPCSSSMAT
Sbjct:   342 TYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMAT 401

Query:   236 ISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVFGQALY-- 293
             ISASAPFPT+TLDLT SPN                G    L  +  + LP + GQALY  
Sbjct:   402 ISASAPFPTITLDLTESPNGNNPTNNPLMQFSQRSG----LVELNQSVLPHMMGQALYYN 457

Query:   294 NQSKFSG 300
              QSKFSG
Sbjct:   458 QQSKFSG 464

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 186/364 (51%), Positives = 213/364 (58%)

Query:     1 MVPRQFIGLGPSAETDHEVSNCSSDEERTL-SGTPPNIVEAASKEHVNSNGKNEIVSFDD 59
             MVPRQF+ LGPS+      +  SS+E  T+ SG+PP+++E+       SN +        
Sbjct:   181 MVPRQFMDLGPSSGAAEHGAEVSSEERTTVRSGSPPSLLES-------SNPRE------- 226

Query:    60 QXXXXXXXENSNGKRI-GREESPE-SETQGWGPNNKVQK----LSSAKG------IDQSN 107
                        NGKR+ GREES E SE+  WG  NKV K     S++ G      IDQS 
Sbjct:   227 -----------NGKRLLGREESSEESESNAWGNPNKVPKHNPSSSNSNGNRNGNVIDQSA 275

Query:   108 -EATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQ 166
              EATMRKARVSVRARSEA MI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQ
Sbjct:   276 AEATMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQ 335

Query:   167 RCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARA 225
             RCAEDR+ILITTYEGNHNH                            DG+MNP NLLARA
Sbjct:   336 RCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARA 395

Query:   226 ILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTNTQLP 285
             ILPCSSSMATISASAPFPT+TLDLT+SPN                 +P    +V    LP
Sbjct:   396 ILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAV----LP 451

Query:   286 QVFGQALYN---QSKFSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATAAITA 342
             QV GQA+YN   QSKFSG                             A++VSAA+AAI +
Sbjct:   452 QVVGQAMYNNQQQSKFSGLQL-------------PAQPLQIAATSSVAESVSAASAAIAS 498

Query:   343 DPNF 346
             DPNF
Sbjct:   499 DPNF 502

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 90/172 (52%), Positives = 108/172 (62%)

Query:    93 KVQKLSSAKGIDQSN---EATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRA 149
             ++ +  S    +Q N   +   RKARVSVRARS+A  + DGCQWRKYGQKMAKGNPCPRA
Sbjct:   201 RIDQNKSTNHEEQQNPHDQLPYRKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRA 260

Query:   150 YYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXX--XXXXXXXXXXXXXXXXXXXX 207
             YYRCTMAVGCPVRKQVQRCAED TIL TTYEGNHNH                        
Sbjct:   261 YYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGS 320

Query:   208 XXXXXXDGIMNPNLLARAIL----PCSSSMATISASAPFPTVTLDLTHSPNP 255
                     + +P+  + +      P +S++AT+SASAPFPT+TLDLT+ P P
Sbjct:   321 SSSNLHQTLSSPSATSSSSFYHNFPYTSTIATLSASAPFPTITLDLTNPPRP 372

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 96/265 (36%), Positives = 130/265 (49%)

Query:     5 QFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQXXXX 64
             + + L      + EV + S+ EE+       ++ EA    + + N K+ I          
Sbjct:    65 ELVSLSLGRRLNSEVPSGSNKEEKN-----KDVEEAEGDRNYDDNEKSSIQGLS-MGIEY 118

Query:    65 XXXENSNGKRIGREESPESETQGWGPNNKVQKLSSA----KGIDQSNEATM------RKA 114
                 N N K +  + + E+ +     NNK++  +S      G D  +E  +      +K 
Sbjct:   119 KALSNPNEK-LEIDHNQETMSLEISNNNKIRSQNSFGFKNDGDDHEDEDEILPQNLVKKT 177

Query:   115 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTI 174
             RVSVR+R E P + DGCQWRKYGQK+AKGNPCPRAYYRCT+A  CPVRKQVQRC+ED +I
Sbjct:   178 RVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSI 237

Query:   175 LITTYEGNHNH----XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--GIMNPNLLARAILP 228
             LI+TYEG HNH                                D  G+ N +L    I P
Sbjct:   238 LISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHGL-NFSLSGNNITP 296

Query:   229 CSSSMATIS-ASAPFPTVTLDLTHS 252
                +    S +S+  PTVTLDLT S
Sbjct:   297 KPKTHFLQSPSSSGHPTVTLDLTTS 321

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 84/193 (43%), Positives = 103/193 (53%)

Query:    68 ENSNGKRIGREESPESETQGWGPNNKVQKLSS---AKGIDQSNEAT----MRKARVSVRA 120
             E   G  +    +  SE + W P     K SS   A G D   EA     +++ARV VRA
Sbjct:   161 EPKEGLSMENRANSGSE-EAWAPGKVTGKRSSPAPASGGDADGEAGQQNHVKRARVCVRA 219

Query:   121 RSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYE 180
             R + P + DGCQWRKYGQK+AKGNPCPRAYYRCT+A GCPVRKQVQRCA+D +ILITTYE
Sbjct:   220 RCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYE 279

Query:   181 GNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIM-NPNLLARAILPCSS-SMATISA 238
             G H+H                               M   NL   +    ++ S  + + 
Sbjct:   280 GTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAEMIGNNLYDNSRFNNNNKSFYSPTL 339

Query:   239 SAPF-PTVTLDLT 250
              +P  PTVTLDLT
Sbjct:   340 HSPLHPTVTLDLT 352

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

TAIR|locus:2199317 WRKY9 "WRKY DNA-binding protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 69/113 (61%), Positives = 78/113 (69%)

Query:    73 KRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQ 132
             K+  +EES E+        N      +   I  S++   RKARVSVRAR E   + DGCQ
Sbjct:   181 KKQKQEESKEAVQSHHQRYNSSSLDMNMPRIISSSQGN-RKARVSVRARCETATMNDGCQ 239

Query:   133 WRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 185
             WRKYGQK AKGNPCPRAYYRCT+A GCPVRKQVQRC ED +ILITTYEG HNH
Sbjct:   240 WRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNH 292

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2196779 WRKY36 "WRKY DNA-binding protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 68/173 (39%), Positives = 97/173 (56%)

Query:    16 DHEVSNCSSDEERTLSGTPPNIVEAASKEHVN-SNGKNEIVSFDDQXXXXXXXENSNGKR 74
             D ++S      E+ +S    N V+  S ++V  S  K   + F  Q       +  +  R
Sbjct:    89 DVDISLRLGRSEQKISKKEENKVDKISTKNVEESKDKRSALGFGFQIQSYEASKLDDLCR 148

Query:    75 IGREESPESETQGWGPNNKVQKLSSAKGIDQSNEAT-MRKARVSVRARSEAPMITDGCQW 133
               +  + E++      + K  +  + + + + +E T ++K RV V+A  E P I DGCQW
Sbjct:   149 QVKLANAENKCVSSRKDVKSVRNENHQDVLEEHEQTGLKKTRVCVKASCEDPSINDGCQW 208

Query:   134 RKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT-ILITTYEGNHNH 185
             RKYGQK AK NP PRAYYRC+M+  CPVRKQVQRC E+ T   +TTYEGNH+H
Sbjct:   209 RKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDH 261

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0015698 "inorganic anion transport" evidence=RCA

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 66/179 (36%), Positives = 93/179 (51%)

Query:    12 SAETDHE-VSNCSSDEERTLSGTPPNIVEAASKEHVNSNG-KNEIVSFDDQXXXXXXXEN 69
             S+ T H  V N S D  R  S   PN     S    +S G + E  +  D        + 
Sbjct:   251 SSSTFHSAVYNASLDHNRQASSDQPN--SNNSFHQSDSFGMQQEDNTTSDSVGDDEFEQG 308

Query:    70 SNGKRIGREESP---ESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPM 126
             S+   + R+E     E E + W  +N+        G +     T+R+ R+ V+  S+  +
Sbjct:   309 SS--IVSRDEEDCGSEPEAKRWKGDNETN------GGNGGGSKTVREPRIVVQTTSDIDI 360

Query:   127 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 185
             + DG +WRKYGQK+ KGNP PR+YY+CT  +GCPVRK V+R + D   +ITTYEG HNH
Sbjct:   361 LDDGYRWRKYGQKVVKGNPNPRSYYKCT-TIGCPVRKHVERASHDMRAVITTYEGKHNH 418

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 47/105 (44%), Positives = 62/105 (59%)

Query:    81 PESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKM 140
             P +   G+    +       K I +  +  + K  V       + ++ DG QWRKYGQK+
Sbjct:   146 PGAAAAGYADQTECTSGEPCKRIREECKPKISKLYVHADPSDLSLVVKDGYQWRKYGQKV 205

Query:   141 AKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 185
              K NPCPRAY+RC+ A  CPV+K+VQR AED TIL+ TYEG HNH
Sbjct:   206 TKDNPCPRAYFRCSFAPACPVKKKVQRSAEDNTILVATYEGEHNH 250

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
smart00774	59	smart00774, WRKY, DNA binding domain	5e-37
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	4e-36

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  127 bits (323), Expect = 5e-37
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 129 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 185
           DG QWRKYGQK+ KG+P PR+YYRCT   GCP +KQVQR  +D +++  TYEG H H
Sbjct: 3   DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  125 bits (316), Expect = 4e-36
 Identities = 37/59 (62%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 129 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL 187
           DG  WRKYGQK  KG+P PR+YYRCT   GCPV+KQV+R ++D  I+  TYEG HNHP 
Sbjct: 3   DGYNWRKYGQKPVKGSPFPRSYYRCTSP-GCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	93.85
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	93.8

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=4.2e-32  Score=208.74  Aligned_cols=60  Identities=65%  Similarity=1.255  Sum_probs=52.2

Q ss_pred             CCccchhhhccccccCCCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCCCC
Q 016623          127 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL  187 (386)
Q Consensus       127 ~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH~~  187 (386)
                      ++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            579999999999999999999999999995 999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=1.2e-31  Score=206.50  Aligned_cols=59  Identities=59%  Similarity=1.203  Sum_probs=57.1

Q ss_pred             CCccchhhhccccccCCCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCC
Q 016623          127 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH  185 (386)
Q Consensus       127 ~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH  185 (386)
                      ++|||+|||||||.|||+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999779999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=93.85  E-value=0.04  Score=43.60  Aligned_cols=32  Identities=41%  Similarity=0.692  Sum_probs=27.0

Q ss_pred             CCcccccceeeecCCCcEEEEEeccCCCCCCCh
Q 016623          157 VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  189 (386)
Q Consensus       157 ~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~  189 (386)
                      .||+|+=.|.+.. |....++.+..+|||++-|
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            5999999998776 6777888999999999743

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.80  E-value=0.028  Score=40.87  Aligned_cols=50  Identities=28%  Similarity=0.575  Sum_probs=26.3

Q ss_pred             CCCccchhhhccccccCCCCCCCcccccccc--CCcccccceeeecCCCcEEEEEeccCCCC
Q 016623          126 MITDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNH  185 (386)
Q Consensus       126 ~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~--~gC~arKqVQR~~dD~~il~tTYeG~HnH  185 (386)
                      ++-|||.-+++...      ..+.|+||+..  .+|+|+=.+.  .++.  .++...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            45699988876655      34589999985  3799987776  3344  23344499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	386
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		4e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		7e-17

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 173
           +R+ V  ++   ++ DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59
Query: 174 ILITTYEGNHNH 185
           +LITTYEG H+H
Sbjct: 60  LLITTYEGKHDH 71

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 118 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 177
           V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 66
Query: 178 TYEGNHNH 185
           TYEG HNH
Sbjct: 67  TYEGKHNH 74
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	386
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-48
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-47

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  158 bits (400), Expect = 1e-48
 Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)

Query: 114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 173
           +R+ V  ++   ++ DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59

Query: 174 ILITTYEGNHNHPLPPA 190
           +LITTYEG H+H +PP 
Sbjct: 60  LLITTYEGKHDHDMPPG 76

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  155 bits (394), Expect = 1e-47
 Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 112 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 171
                 V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATD 60

Query: 172 RTILITTYEGNHNHPLP 188
              ++TTYEG HNH LP
Sbjct: 61  PKAVVTTYEGKHNHDLP 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	386
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	86.31

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=4.4e-36  Score=240.08  Aligned_cols=75  Identities=52%  Similarity=1.105  Sum_probs=72.3

Q ss_pred             eeEEEEeccCCCCCCccchhhhccccccCCCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCCCCCh
Q 016623          114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  189 (386)
Q Consensus       114 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~  189 (386)
                      .||.|++.++.++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            389999999999999999999999999999999999999998 699999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=9.1e-36  Score=239.30  Aligned_cols=75  Identities=55%  Similarity=1.051  Sum_probs=69.1

Q ss_pred             eeEEEEeccCCCCCCccchhhhccccccCCCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCCCCCh
Q 016623          114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  189 (386)
Q Consensus       114 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~  189 (386)
                      -||+|+++++.++++|||+|||||||.|||++|||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            378899999999999999999999999999999999999999 799999999999999999999999999999874

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=86.31  E-value=0.33  Score=38.07  Aligned_cols=64  Identities=19%  Similarity=0.258  Sum_probs=38.5

Q ss_pred             eeEEEEeccCCCCCCccchhhhccccccCCCCCCCcccccccc--CCcccccceeeecCCCcEEEEEeccCCCCCCChh
Q 016623          114 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPA  190 (386)
Q Consensus       114 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~--~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~a  190 (386)
                      ..++...+.-.-++-|||..++--+  .    ..+.|.+|+..  .+|.|+-....  ++     +...+.|||++...
T Consensus        11 ~~fv~s~rG~~~Lv~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~~~   76 (87)
T 2rpr_A           11 LEFLRTSLGGRFLVHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPDLA   76 (87)
T ss_dssp             CEEEEETTTEEEEEETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCCHH
T ss_pred             eEEEEcCCCCcEEEECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCchh
Confidence            3443333333345789998876322  1    23689999984  58999754432  21     23468899976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	386
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	7e-36

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  123 bits (311), Expect = 7e-36
 Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 118 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 177
           V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 59

Query: 178 TYEGNHNHPLP 188
           TYEG HNH LP
Sbjct: 60  TYEGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	386
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-35  Score=233.29  Aligned_cols=71  Identities=58%  Similarity=1.111  Sum_probs=67.4

Q ss_pred             EEeccCCCCCCccchhhhccccccCCCCCCCccccccccCCcccccceeeecCCCcEEEEEeccCCCCCCCh
Q 016623          118 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  189 (386)
Q Consensus       118 v~t~se~~~~~DGy~WRKYGQK~IKGsp~PRsYYRCT~~~gC~arKqVQR~~dD~~il~tTYeG~HnH~~P~  189 (386)
                      |++.++.++++|||+|||||||.|||+++||+||||++ .+|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            46778899999999999999999999999999999998 699999999999999999999999999999874