Citrus Sinensis ID: 016650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRVTFELK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHccccccccccccccccEEEEEcccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHccccccccccccccccEEEccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEcccccccccccccccEEEEcccccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEEccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHccccccEcccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccEccccccccccHEHEHHEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEcccccccccHccccccccccccccccccccccccccccccccccEEccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MLDLNLNVMSIEstqqnsdeervGSVVLVekspegssgtsnssvvnadassnvgddescstravagdnsvftFNFDILKvggdsgnvrnenveqnnaasrkefaffpasgggengggqssgswiDLSFDKQQQQYQnqqpqqqegggevrvtqqsspvvkksrrgprsrssqyrgvtfyrrtgrweshiwdcgkqvylggFDTAHAAARAYDRAAIKfrgvdadinfnlADYEDDMKQMKNLTKEEFVHILRRQstgfsrgsskyrgvtlhkcgrwEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIkcngreavtnfepstyegemitegsneggdhnldlnlgisssfgsgpkaneghsqflsgpygahggrtsrvTFELK
Flexible Loop (DISEMBL)
MLDLNLNVMSIestqqnsdeervGSVVLVEkspegssgtsnssvvnadassnvgddescstravagdnsvFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQpqqqegggevrvtqqsspvvkksrrgprsrssqyrgvtfyrrtgrweshiWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRrqstgfsrgsskyrgvtlhkcgrwEARMGQFLGKKYIYLGLFDSEVEAARAYDKAaikcngreavtnfepstYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQflsgpygahggrtsrvtfelk
Low Complexity Region (SEG)
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEgssgtsnssvvnadassnvGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPAsgggengggqssgsWIDLSFDKqqqqyqnqqpqqqEGGGEVRVTQQSSPVVKKsrrgprsrssQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTahaaaraydraaIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRVTFELK
Disordered region (IsUnstruct)
***************************************************************VAGDNSVFTFNFDILKVGG******************************************************************************************YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNF*****************************************************************
Disordered Region (DISOPRED)
MLDLNLN*************************************************************************************************************************************************************************TFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTY*********************************************************EL*
Disordered Region (DISEMBL)
MLDLNLNVMSIES**********GSVVLV*******************************TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDK******************************************YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRVTFELK
Disordered Region (DISPRO)
******************************************************************DNSVFTFNFDILKVG**************************************************************************************SRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEG*MI**************************************P*GAHGGRTSRVTF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRVTFELK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q9SK03	449	Ethylene-responsive trans	yes	no	0.844	0.723	0.571	2e-89
P47927	432	Floral homeotic protein A	no	no	0.612	0.546	0.692	1e-82
Q9FH95	352	AP2-like ethylene-respons	no	no	0.509	0.556	0.811	6e-79
Q9LVG2	485	AP2-like ethylene-respons	no	no	0.893	0.709	0.501	1e-75
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.459	0.317	0.505	5e-46
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.425	0.288	0.531	6e-46
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.485	0.325	0.485	9e-46
Q38914	555	AP2-like ethylene-respons	no	no	0.493	0.342	0.477	1e-44
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.472	0.438	0.492	2e-44
Q6PQQ4	584	AP2-like ethylene-respons	no	no	0.425	0.280	0.52	7e-44

>sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2

 Score =  330 bits (845), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 227/397 (57%), Positives = 255/397 (64%), Gaps = 72/397 (18%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS-------SGTSNSSVVNADASSNV 53
           MLDLNLN  S ESTQ   D        L  ++ + S       SGTS SSV+NAD     
Sbjct: 1   MLDLNLNADSPESTQYGGDS------YLDRQTSDNSAGNRVEESGTSTSSVINAD----- 49

Query: 54  GDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGG- 112
           GD++SCSTRA       FT +FDILKVG  SG    +     +A+  KEF  FP SG   
Sbjct: 50  GDEDSCSTRA-------FTLSFDILKVGSSSGG---DESPAASASVTKEF--FPVSGDCG 97

Query: 113 ---ENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV------VKKSR 163
              +  G  SS +WIDLSFD+              G GE ++             VKKSR
Sbjct: 98  HLRDVEGSSSSRNWIDLSFDRI-------------GDGETKLVTPVPTPAPVPAQVKKSR 144

Query: 164 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 223
           RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA
Sbjct: 145 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 204

Query: 224 DINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 283
           DINF L DYE+DMKQ++NL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF
Sbjct: 205 DINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 264

Query: 284 LGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLD 343
           LGKK               AYDKAAI  NGREAVTNFE S+Y+ E+ +E +N      +D
Sbjct: 265 LGKK---------------AYDKAAINTNGREAVTNFEMSSYQNEINSESNNS----EID 305

Query: 344 LNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRV 380
           LNLGIS S G+ PK N     F S  Y    G + R+
Sbjct: 306 LNLGISLSTGNAPKQNGRLFHFPSNTYETQRGVSLRI 342

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.
Arabidopsis thaliana (taxid: 3702)

>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 180/260 (69%), Positives = 200/260 (76%), Gaps = 24/260 (9%)

Query: 105 FFPASGGGENGGGQSSG----SWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVV- 159
           FFP      NGGG +SG     W  + F          Q     G    + T  ++ VV 
Sbjct: 65  FFPEMDS--NGGGVASGFPRAHWFGVKF---------CQSDLATGSSAGKATNVAAAVVE 113

Query: 160 -----KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRA 214
                KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRA
Sbjct: 114 PAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRA 173

Query: 215 AIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCG 274
           AIKFRGV+ADINFN+ DY+DD+KQM NLTKEEFVH+LRRQSTGF RGSSKYRGVTLHKCG
Sbjct: 174 AIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCG 233

Query: 275 RWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGS 334
           RWEARMGQFLGKKY+YLGLFD+EVEAARAYDKAAIKCNG++AVTNF+PS Y+ E+  E S
Sbjct: 234 RWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELNAESS 293

Query: 335 ---NEGGDHNLDLNLGISSS 351
                  DHNLDL+LG S++
Sbjct: 294 GNPTTPQDHNLDLSLGNSAN 313

Probable transcriptional activator that promotes early floral meristem identity. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS. It is also required during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH95|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1

 Score =  294 bits (753), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 159/196 (81%), Positives = 174/196 (88%)

Query: 156 SPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 215
           SP +KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA
Sbjct: 80  SPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 139

Query: 216 IKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGR 275
           IKFRGVDADINF++ DY DD+KQM NLTKEEF+H+LRRQSTGF RGSSKYRGVTLHKCGR
Sbjct: 140 IKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGR 199

Query: 276 WEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSN 335
           WE+R+GQFL KKY+YLGLFD+E+EAARAYDKAAIKCNG++AVTNF+P  YE E       
Sbjct: 200 WESRLGQFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSET 259

Query: 336 EGGDHNLDLNLGISSS 351
               HNL L+LG SSS
Sbjct: 260 TRNGHNLGLSLGESSS 275

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG2|TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=1 SV=1

 Score =  284 bits (726), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 192/383 (50%), Positives = 231/383 (60%), Gaps = 39/383 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNV-GDDESC 59
           MLDLNL+V S ESTQ   D   V  V L +      S TSNSSVVNA+ASS + G+DE C
Sbjct: 1   MLDLNLDVDSTESTQNERDSITVKGVSLNQMD---ESVTSNSSVVNAEASSCIDGEDELC 57

Query: 60  STRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE--NGGG 117
           STR V        F F+ILK     G    E  +   +A      FFP + G    +   
Sbjct: 58  STRTV-------KFQFEILK----GGGEEEEEDDDERSAVMMTKEFFPVAKGMNFMDSSA 106

Query: 118 QSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVT 177
           QSS S +D+SF + +Q           G    RV Q  S  VKKSRRGPRS+SSQYRGVT
Sbjct: 107 QSSRSTVDISFQRGKQGGDFIGSGSGGGDAS-RVMQPPSQPVKKSRRGPRSKSSQYRGVT 165

Query: 178 FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMK 237
           FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA+KFRG++ADINF + DYE+D+K
Sbjct: 166 FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGLEADINFVIGDYEEDLK 225

Query: 238 QMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSE 297
           QM NL+KEE V +LRRQS+GFSR +S+Y+GV L K G W A+M Q  G     +G     
Sbjct: 226 QMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGN----MGC---- 277

Query: 298 VEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPK 357
                  DKAA++  GREA +  EP  +   MI E +N      LDLNLGIS S G GPK
Sbjct: 278 -------DKAAVQWKGREAASLIEP--HASRMIPEAANV----KLDLNLGISLSLGDGPK 324

Query: 358 ANEGHSQFLSGPYGAHGGRTSRV 380
             +   +    P  +  GR + +
Sbjct: 325 QKDRALRLHHVPNNSVCGRNTMM 347

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  185 bits (470), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 131/188 (69%), Gaps = 11/188 (5%)

Query: 154 QSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDT 203
           ++SP  KK+      R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D 
Sbjct: 185 EASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDK 244

Query: 204 AHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSS 263
              AARAYD AA+K+ G     NF +++YE ++++MK++T++EFV  LRR+S+GFSRG+S
Sbjct: 245 EDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGAS 304

Query: 264 KYRGVT-LHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEP 322
            YRGVT  H+ GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+ 
Sbjct: 305 MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDI 364

Query: 323 STYEGEMI 330
           S Y+ + I
Sbjct: 365 SRYDVKSI 372

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  185 bits (469), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 124/175 (70%), Gaps = 11/175 (6%)

Query: 169 RSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARAYDRAAIKF 218
           R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+
Sbjct: 187 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKY 246

Query: 219 RGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVT-LHKCGRWE 277
            G     NF + +YE ++++MKN+T++EFV  +RR+S+GFSRG+S YRGVT  H+ GRW+
Sbjct: 247 WGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQ 306

Query: 278 ARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITE 332
           AR+G+  G K +YLG F +E EAA AYD AAIK  G  AVTNFE + Y+ + I E
Sbjct: 307 ARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILE 361

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  184 bits (467), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 13/200 (6%)

Query: 146 GGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQ 195
           GG + V + ++P       G   R+S YRGVT +R TGR+E+H+WD  C        G+Q
Sbjct: 157 GGALAVVETATPRRALDTFG--QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 214

Query: 196 VYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQS 255
           VYLGG+D    AAR+YD AA+K+ G     NF + +YE ++++MK++T++EFV  +RR+S
Sbjct: 215 VYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKS 274

Query: 256 TGFSRGSSKYRGVT-LHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGR 314
           +GFSRG+S YRGVT  H+ GRW+AR+G+  G K +YLG F +E EAA AYD AAIK  G 
Sbjct: 275 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGL 334

Query: 315 EAVTNFEPSTYEGEMITEGS 334
            AVTNFE + Y+ + I E S
Sbjct: 335 NAVTNFEINRYDVKAILESS 354

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 134/201 (66%), Gaps = 11/201 (5%)

Query: 141 QQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDC-------- 192
           +++ G  +V V  Q   V +KS      R+SQYRGVT +R TGR+E+H+WD         
Sbjct: 252 KKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHS 311

Query: 193 --GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHI 250
             G+QVYLGG+D    AARAYD AA+K+ G     NF+  +Y+ +++ MKN+T++E+V  
Sbjct: 312 RKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAH 371

Query: 251 LRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAI 309
           LRR+S+GFSRG+S YRGVT  H+ GRW+AR+G+  G K +YLG F ++ EAA AYD AAI
Sbjct: 372 LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAI 431

Query: 310 KCNGREAVTNFEPSTYEGEMI 330
           K  G  AVTNF+ + Y+ + I
Sbjct: 432 KFRGTNAVTNFDITRYDVDRI 452

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 130/193 (67%), Gaps = 11/193 (5%)

Query: 153 QQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFD 202
           Q    V +KS      R+SQYRGVT +R TGR+E+H+WD  C        G+QVYLGG+D
Sbjct: 204 QVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYD 263

Query: 203 TAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGS 262
               AARAYD AA+K+ G    +NF L++YE +++++ N+ ++EFV +LRR S+GFSRG+
Sbjct: 264 EEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGA 323

Query: 263 SKYRGVTL-HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFE 321
           S YRGVT  H+ GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+
Sbjct: 324 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFD 383

Query: 322 PSTYEGEMITEGS 334
            + Y+ + I   S
Sbjct: 384 INRYDVKRICSSS 396

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ4|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2

 Score =  178 bits (451), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 124/175 (70%), Gaps = 11/175 (6%)

Query: 169 RSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARAYDRAAIKF 218
           R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+
Sbjct: 207 RTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKY 266

Query: 219 RGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVT-LHKCGRWE 277
            G     NF L++YE ++++MK++T++E+V  LRR+S+GFSRG+S YRGVT  H+ GRW+
Sbjct: 267 WGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQ 326

Query: 278 ARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITE 332
           AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+ + Y  + I E
Sbjct: 327 ARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRYNVKAILE 381

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
359479031	500	PREDICTED: ethylene-responsive transcrip	0.906	0.698	0.703	1e-125
255578779	499	Protein AINTEGUMENTA, putative [Ricinus	0.883	0.681	0.682	1e-122
449461037	497	PREDICTED: ethylene-responsive transcrip	0.896	0.694	0.664	1e-121
356547208	476	PREDICTED: ethylene-responsive transcrip	0.872	0.705	0.688	1e-120
356557477	485	PREDICTED: ethylene-responsive transcrip	0.888	0.705	0.672	1e-119
297746184	478	unnamed protein product [Vitis vinifera]	0.880	0.709	0.694	1e-118
356541277	477	PREDICTED: ethylene-responsive transcrip	0.914	0.737	0.664	1e-111
388506260	453	unknown [Medicago truncatula]	0.841	0.715	0.610	1e-103
350539485	474	AP2 transcription factor SlAP2e [Solanum	0.818	0.664	0.596	1e-102
350540116	496	AP2 transcription factor SlAP2d [Solanum	0.883	0.685	0.625	1e-102

>gi|359479031|ref|XP_002284749.2| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Vitis vinifera]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 282/401 (70%), Positives = 302/401 (75%), Gaps = 52/401 (12%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           MLDLNLNV S +STQ         SVV  EK PEGS      SGTSNSS+VNA+ASSN G
Sbjct: 1   MLDLNLNVGSSDSTQHGD------SVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGG 54

Query: 55  -DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DD+SCSTRA  GD   F+ NFDILKVG D G+        N+  +R+    FP S GG 
Sbjct: 55  GDDDSCSTRA--GD--AFSLNFDILKVG-DCGS-------PNDVVTRQ---LFPMSAGGG 99

Query: 114 NGG------GQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV------VKK 161
            GG      GQSS +WIDLSF++              GG EVRV QQ          VKK
Sbjct: 100 VGGDSVFFQGQSSSNWIDLSFNQSGTV----------GGQEVRVAQQHPQPQQQQQPVKK 149

Query: 162 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 221
           SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV
Sbjct: 150 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 209

Query: 222 DADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG 281
           DADINFNL+DY++D+KQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG
Sbjct: 210 DADINFNLSDYDEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG 269

Query: 282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHN 341
           QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI E SNEG DHN
Sbjct: 270 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIPEASNEGSDHN 329

Query: 342 LDLNLGISSSFGSGPKANE--GHSQFLSGPYGAHGGRTSRV 380
           LDLNLGIS    +GPK  +  GH QF SG + AH GR S +
Sbjct: 330 LDLNLGISPPLSNGPKEIDGLGHLQFHSGSHDAHNGRRSMM 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578779|ref|XP_002530247.1| Protein AINTEGUMENTA, putative [Ricinus communis] gi|223530251|gb|EEF32153.1| Protein AINTEGUMENTA, putative [Ricinus communis]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 273/400 (68%), Positives = 290/400 (72%), Gaps = 60/400 (15%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKS---------------PEGSSGTSNSSVV 45
           MLDLNLNV S ESTQ       V SV L+EK                 EGS  TSNSS+ 
Sbjct: 1   MLDLNLNVESSESTQN------VDSVTLMEKYQYQYQYQYQHQQYNYTEGSGTTSNSSIA 54

Query: 46  NADASSNVGDDESCSTRAVAG------------DNSVFTFNFDILKVGGDSGNVRNENVE 93
           NADASSN   DESCSTRA  G             N ++TFNFDILKVG         N E
Sbjct: 55  NADASSN---DESCSTRAYTGGDTISTTTDSNNKNKIYTFNFDILKVG---------NEE 102

Query: 94  QNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQ 153
             N A       FP     ENG G      IDLSF++QQQQ +         GGEVRV Q
Sbjct: 103 NENGAVIGTKELFPV----ENGHG------IDLSFERQQQQQE-----IIGVGGEVRVMQ 147

Query: 154 QSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR 213
           Q    VKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR
Sbjct: 148 QPLQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR 207

Query: 214 AAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKC 273
           AAIKFRG+DADINFNL DY++D+KQMKNLTKEEFVHILRR STGFSRGSSKYRGVTLHKC
Sbjct: 208 AAIKFRGIDADINFNLGDYDEDLKQMKNLTKEEFVHILRRHSTGFSRGSSKYRGVTLHKC 267

Query: 274 GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEG 333
           GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI++ 
Sbjct: 268 GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMISKA 327

Query: 334 SNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAH 373
           S+EG +HNLDLNLGIS SFG+  K NEGH Q  SGPY  +
Sbjct: 328 SSEGSEHNLDLNLGISPSFGNCLKENEGHQQLHSGPYDVY 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461037|ref|XP_004148250.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus] gi|449515297|ref|XP_004164686.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/376 (66%), Positives = 278/376 (73%), Gaps = 31/376 (8%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           M DLNLNV S ++ Q+        SVV  EK P+GS      SGTSNSS+VNAD SSN G
Sbjct: 1   MFDLNLNVDSPDAAQKED------SVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGG 54

Query: 55  DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGEN 114
           DD+SCSTRA      +FTFNF+ILK G  + +V  + +         +F          +
Sbjct: 55  DDDSCSTRA---GGELFTFNFEILKAG-SANDVVTKELFPIGGTVNADFGILQGHNSASS 110

Query: 115 GGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSP-VVKKSRRGPRSRSSQY 173
               S  +WI+L+FD+                GE R  Q   P  VKKSRRGPRSRSSQY
Sbjct: 111 SSTSSRKNWINLAFDRSGS------------AGEGRTVQPVQPQPVKKSRRGPRSRSSQY 158

Query: 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233
           RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRGVDADINFNL+DYE
Sbjct: 159 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYE 218

Query: 234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 293
           DD+KQMKNL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQ LGKKYIYLGL
Sbjct: 219 DDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGL 278

Query: 294 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGIS-SSF 352
           FDSEVEAARAYDKAAIKCNGREAVTNFEPSTY GE I+EGS+EGG + LDLNLGIS  S 
Sbjct: 279 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTY-GEKISEGSSEGGWNMLDLNLGISPPSL 337

Query: 353 GSGPKANEGHSQFLSG 368
            + PK +EGH +F SG
Sbjct: 338 DNSPKDSEGHLRFQSG 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547208|ref|XP_003542008.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/388 (68%), Positives = 292/388 (75%), Gaps = 52/388 (13%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNL   + ESTQ  +DE     +VL++K PE SSGTSNSS+VNA+ SSN   ++SCS
Sbjct: 1   MLDLNL---TAESTQ--NDE----LLVLLDKFPEASSGTSNSSIVNAEGSSN---EDSCS 48

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSS 120
           TRA  GD  VFTFNF ILKV   +  V         AA+ KE   FP S   EN  GQSS
Sbjct: 49  TRA--GD--VFTFNFGILKVEAANDVV---------AAATKEL--FPVSS--ENWQGQSS 91

Query: 121 GSW-------IDLSFDKQQQQYQNQQPQQQEGGGEVRVTQ-QSSPVVKKSRRGPRSRSSQ 172
            S        +DLS D+Q               GEV+V Q Q  P VKKSRRGPRSRSSQ
Sbjct: 92  TSLFQARKSLMDLSLDQQH--------------GEVKVVQVQPQPKVKKSRRGPRSRSSQ 137

Query: 173 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADY 232
           YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG+DADINFNL DY
Sbjct: 138 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDY 197

Query: 233 EDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG 292
           E+D+KQMKNL+KEEFVHILRR S+GFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG
Sbjct: 198 EEDLKQMKNLSKEEFVHILRRHSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG 257

Query: 293 LFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSF 352
           LFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYE EM  E  NEGG H+LDL+LGI++  
Sbjct: 258 LFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHDLDLSLGIATP- 316

Query: 353 GSGPKANEGHSQFLSGPYGAHGGRTSRV 380
           G GPK N GH QF S PY  H GR+S +
Sbjct: 317 GHGPKENRGHLQFQSIPYNMHPGRSSMM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557477|ref|XP_003547042.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/382 (67%), Positives = 279/382 (73%), Gaps = 40/382 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNLN    ESTQ N       S+VL++K PE S GTSNSSVVNA+ SSN   ++SCS
Sbjct: 1   MLDLNLNA---ESTQNNE------SLVLLDKFPEASLGTSNSSVVNAEGSSN---EDSCS 48

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSS 120
           TRA  GD  VF F+F ILKV G      NE V    A + KE   FP S          S
Sbjct: 49  TRA--GD--VFAFSFGILKVEG-----ANEVV----ATATKEL--FPVS----------S 83

Query: 121 GSWIDLSFDKQQQQYQNQQ--PQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTF 178
            +W   S     Q  +N    P   + G    V  Q  P VKKSRRGPRSRSSQYRGVTF
Sbjct: 84  ENWQGQSSTSSSQARKNLMDLPLDHQNGEVKVVQVQPQPQVKKSRRGPRSRSSQYRGVTF 143

Query: 179 YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQ 238
           YRRTGRWESHIWDCGKQVYLGGFDTAH AARAYDRAAIKFRG+DADINF+L DYE+D+KQ
Sbjct: 144 YRRTGRWESHIWDCGKQVYLGGFDTAHIAARAYDRAAIKFRGLDADINFDLVDYEEDLKQ 203

Query: 239 MKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 298
           MKNL+K+EFVHILRR STGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV
Sbjct: 204 MKNLSKQEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 263

Query: 299 EAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKA 358
           EAARAYDKAAIKCN REAVTNFEPS YE EM  E  NEGG H+LDLNLGI++  G GPK 
Sbjct: 264 EAARAYDKAAIKCNRREAVTNFEPSIYESEMKPEAINEGGSHDLDLNLGIATP-GHGPKE 322

Query: 359 NEGHSQFLSGPYGAHGGRTSRV 380
           N GH QF S PY  H GR+SR+
Sbjct: 323 NRGHLQFQSIPYNMHPGRSSRM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746184|emb|CBI16240.3| unnamed protein product [Vitis vinifera]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 270/389 (69%), Positives = 289/389 (74%), Gaps = 50/389 (12%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           MLDLNLNV S +STQ         SVV  EK PEGS      SGTSNSS+VNA+ASSN G
Sbjct: 1   MLDLNLNVGSSDSTQHGD------SVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGG 54

Query: 55  -DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DD+SCSTRA  GD   F+ NFDILKVG D G+        N+  +R+    FP S GG 
Sbjct: 55  GDDDSCSTRA--GD--AFSLNFDILKVG-DCGS-------PNDVVTRQ---LFPMSAGGG 99

Query: 114 NGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQY 173
            GG        D  F      +Q Q         +    QQ    VKKSRRGPRSRSSQY
Sbjct: 100 VGG--------DSVF------FQGQV------AQQHPQPQQQQQPVKKSRRGPRSRSSQY 139

Query: 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233
           RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL+DY+
Sbjct: 140 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYD 199

Query: 234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 293
           +D+KQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL
Sbjct: 200 EDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 259

Query: 294 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFG 353
           FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI E SNEG DHNLDLNLGIS    
Sbjct: 260 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIPEASNEGSDHNLDLNLGISPPLS 319

Query: 354 SGPKANE--GHSQFLSGPYGAHGGRTSRV 380
           +GPK  +  GH QF SG + AH GR S +
Sbjct: 320 NGPKEIDGLGHLQFHSGSHDAHNGRRSMM 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541277|ref|XP_003539105.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 257/387 (66%), Positives = 278/387 (71%), Gaps = 35/387 (9%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEG------SSGTSNSSVVNADASSNVG 54
           MLDLNLN    E T   S+ E   S + +EK P+G       SGTSNSSVVNAD SSN G
Sbjct: 1   MLDLNLNA---EWTDSFSNGE---SPLPLEKFPDGLRNQMAESGTSNSSVVNADGSSNGG 54

Query: 55  DDE-SCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DE S STRA   D+   TFNFDILKV G +G V  E               FP    G 
Sbjct: 55  GDEDSDSTRAA--DDVYTTFNFDILKVEGANGFVTKE--------------LFPVMSEGA 98

Query: 114 NGGGQSSGS----WIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSR 169
            G   SS S    ++DLSFD         +  Q +   + +   Q+    KKSRRGPRSR
Sbjct: 99  KGHATSSFSGTNGFVDLSFDGDGGNTSEMKMLQPQNQNQTQTRTQTQQPAKKSRRGPRSR 158

Query: 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 229
           SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL
Sbjct: 159 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 218

Query: 230 ADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI 289
           +DYEDD+KQM+NL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI
Sbjct: 219 SDYEDDLKQMQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI 278

Query: 290 YLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGIS 349
           YLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGE+ +   NEGG  NLDLNLGI+
Sbjct: 279 YLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGELKSAAINEGGSQNLDLNLGIA 338

Query: 350 SSFGSGPKANEGHSQFLSGPYGAHGGR 376
           +     PK N G  QF S PY  HGGR
Sbjct: 339 TP--GPPKENWGQLQFPSFPYNTHGGR 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506260|gb|AFK41196.1| unknown [Medicago truncatula]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/383 (61%), Positives = 263/383 (68%), Gaps = 59/383 (15%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNV-GDDESC 59
           MLDLNLN            E+   S++LVEK PE SSGTSNSS+VNA+ASSN+ GD++SC
Sbjct: 1   MLDLNLN------------EDYEDSIMLVEKLPEASSGTSNSSIVNAEASSNITGDEDSC 48

Query: 60  STRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQS 119
           STRA      VFTFNF ILKV G + +V             KEF  FP S G       +
Sbjct: 49  STRA----GGVFTFNFGILKVEGGNDDV---------VVPTKEF--FPVSAGTSTMMIPA 93

Query: 120 SGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQ-QSSPVVKKSRRGPRSRSSQYRGVTF 178
             S +DL+ D++              GGE  V + Q  P  KKSRRGPRSRSSQYRGVTF
Sbjct: 94  RKSAMDLTMDRRL-------------GGENGVVEVQQKPQAKKSRRGPRSRSSQYRGVTF 140

Query: 179 YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQ 238
           YRRTGRWESHIWDCGKQVYLGGFDT HAAARAYDRAAIKFRG+DADINFNL +YE+DM Q
Sbjct: 141 YRRTGRWESHIWDCGKQVYLGGFDTPHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQ 200

Query: 239 MKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 298
           MKNL+KEEFVHILRR S GFSRGSSKYRGVTLHKCGRWEARMGQ LGKK           
Sbjct: 201 MKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKK----------- 249

Query: 299 EAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKA 358
               AYDKAA+KCNGREAVTNFEPSTYE EM     NEGG HNLDLNLG+++  G  PK 
Sbjct: 250 ----AYDKAALKCNGREAVTNFEPSTYENEMKPGAINEGGSHNLDLNLGMATP-GHEPKE 304

Query: 359 NEGHSQFLSGP-YGAHGGRTSRV 380
           N+G+ QF + P Y  H GR  ++
Sbjct: 305 NKGYCQFQTVPSYNMHPGRNLKM 327

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539485|ref|NP_001233891.1| AP2 transcription factor SlAP2e [Solanum lycopersicum] gi|333123376|gb|AEF28823.1| AP2 transcription factor SlAP2e [Solanum lycopersicum]

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/367 (59%), Positives = 257/367 (70%), Gaps = 52/367 (14%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLN++V+       N+D   +  V L+++S      TSNSS+ NA+A+++ GD++SC+
Sbjct: 1   MLDLNVSVI------YNND---LPQVSLLDES-----ATSNSSLRNAEATTSAGDEDSCA 46

Query: 61  TRAVAGDNSVFTFNFDILKVGG-----DSGNVRNENVEQNNAASRKEFA---FFPASGGG 112
               A       FNF ILKV G      S N   E   +N   +  +F     FP   G 
Sbjct: 47  GELXA-------FNFGILKVEGAETSRSSNNDDEEGYGKNQRVTHSQFVTRQLFPVDDGE 99

Query: 113 ENG--------GGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRR 164
            N             SG+ I     +  QQ + +QP+QQ               VKKSRR
Sbjct: 100 LNRKQTDRVILSSARSGTSIGFGDVRIIQQQRTEQPKQQ---------------VKKSRR 144

Query: 165 GPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD 224
           GPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH AARAYDRAAIKFRGVDAD
Sbjct: 145 GPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHTAARAYDRAAIKFRGVDAD 204

Query: 225 INFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFL 284
           INF+L+DYE+DM+QMKNL KEEFVH+LRR STGFSRGSSK+RGVTLHKCGRWEARMGQFL
Sbjct: 205 INFSLSDYEEDMQQMKNLGKEEFVHLLRRHSTGFSRGSSKFRGVTLHKCGRWEARMGQFL 264

Query: 285 GKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDL 344
           GKKYIYLGLFDSEVEAARAYDKAAIK +GREAVTNFEPS+YEGE ++   +EG  H+LDL
Sbjct: 265 GKKYIYLGLFDSEVEAARAYDKAAIKTSGREAVTNFEPSSYEGETMSLPQSEGSQHDLDL 324

Query: 345 NLGISSS 351
           NLGIS++
Sbjct: 325 NLGISTT 331

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540116|ref|NP_001234647.1| AP2 transcription factor SlAP2d [Solanum lycopersicum] gi|333123373|gb|AEF28822.1| AP2 transcription factor SlAP2d [Solanum lycopersicum]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/384 (62%), Positives = 267/384 (69%), Gaps = 44/384 (11%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNLN +  +     +DE                SG+SNSS  N +ASS+ GDDE+CS
Sbjct: 2   MLDLNLNAI-YDGKHSLADE----------------SGSSNSSARNVEASSSAGDDETCS 44

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSG---------NVRNENVEQNNAASRKEFA---FFPA 108
           TRA AGD  +F FNFDILKVGG            +  N + E+    +R +F     FP 
Sbjct: 45  TRA-AGD--MFAFNFDILKVGGGGSGSGGGETRRSCSNNDDEEGYDENRSDFVTQQLFPM 101

Query: 109 SGGGENGGGQSS--GSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGP 166
               E     +S    W+D S D             +E     R+ QQ  PV KKSRRGP
Sbjct: 102 DNNXELNRTHTSRRPDWVDPSVDPPNTV------SFREVQQMGRLQQQQQPV-KKSRRGP 154

Query: 167 RSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADIN 226
           RSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADIN
Sbjct: 155 RSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADIN 214

Query: 227 FNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGK 286
           FNL+DYE+DMKQMKNL+KEEFVH+LRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGK
Sbjct: 215 FNLSDYEEDMKQMKNLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGK 274

Query: 287 KYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNL 346
           KYIYLGLFDSEVEAARAYDKAAIKCNGRE VTNFEPS YEGE+ +   +EG   +LDLNL
Sbjct: 275 KYIYLGLFDSEVEAARAYDKAAIKCNGRETVTNFEPSAYEGEINSNPQSEGSQQDLDLNL 334

Query: 347 GISSSFGSGPKANEGHSQFLSGPY 370
           GI++   S PK  E  S F   PY
Sbjct: 335 GIAT---SSPKEVERSSSFQYHPY 355

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.519	0.462	0.705	3.9e-76
TAIR|locus:2155598	352	TOE3 "target of early activati	0.509	0.556	0.698	1.1e-73
TAIR|locus:2082732	346	SMZ "SCHLAFMUTZE" [Arabidopsis	0.379	0.421	0.525	2.2e-44
TAIR|locus:2056048	325	SNZ "SCHNARCHZAPFEN" [Arabidop	0.303	0.36	0.555	2.5e-40
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.485	0.325	0.435	9.9e-39
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.459	0.317	0.452	3.4e-38
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.420	0.285	0.479	7e-38
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.472	0.438	0.435	1.5e-37
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.472	0.365	0.459	4.9e-37
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.483	0.335	0.431	4.9e-37

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/204 (70%), Positives = 162/204 (79%)

Query:   151 VTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXX 210
             V + + P+ KK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT       
Sbjct:   111 VVEPAQPL-KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 169

Query:   211 XXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTL 270
                  IKFRGV+ADINFN+ DY+DD+KQM NLTKEEFVH+LRRQSTGF RGSSKYRGVTL
Sbjct:   170 YDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 229

Query:   271 HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI 330
             HKCGRWEARMGQFLGKKY+YLGLFD+EVEAARAYDKAAIKCNG++AVTNF+PS Y+ E+ 
Sbjct:   230 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELN 289

Query:   331 TEGSNEGG---DHNLDLNLGISSS 351
              E S       DHNLDL+LG S++
Sbjct:   290 AESSGNPTTPQDHNLDLSLGNSAN 313

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

TAIR|locus:2155598 TOE3 "target of early activation tagged (EAT) 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 137/196 (69%), Positives = 152/196 (77%)

Query:   156 SPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXX 215
             SP +KK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT            
Sbjct:    80 SPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 139

Query:   216 IKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGR 275
             IKFRGVDADINF++ DY DD+KQM NLTKEEF+H+LRRQSTGF RGSSKYRGVTLHKCGR
Sbjct:   140 IKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGR 199

Query:   276 WEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSN 335
             WE+R+GQFL KKY+YLGLFD+E+EAARAYDKAAIKCNG++AVTNF+P  YE E       
Sbjct:   200 WESRLGQFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSET 259

Query:   336 EGGDHNLDLNLGISSS 351
                 HNL L+LG SSS
Sbjct:   260 TRNGHNLGLSLGESSS 275

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009408 "response to heat" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2082732 SMZ "SCHLAFMUTZE" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.2e-44, Sum P(3) = 2.2e-44
 Identities = 84/160 (52%), Positives = 98/160 (61%)

Query:   153 QQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXX 212
             + +  +VKK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT         
Sbjct:   103 RNTQKMVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYD 162

Query:   213 XXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK 272
                IKFRG+DADINF + DY  D+ +MKNL K EFV  LRR+S  F RGSSKY+G+ L K
Sbjct:   163 RAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQK 222

Query:   273 CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN 312
             C        QF  K +  + LF +     R +D AAIK N
Sbjct:   223 CT-------QF--KTHDQIHLFQN-----RGWDAAAIKYN 248

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009658 "chloroplast organization" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2056048 SNZ "SCHNARCHZAPFEN" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
 Identities = 65/117 (55%), Positives = 78/117 (66%)

Query:   150 RVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXX 209
             R  Q++  + KK           YRGVTFYRRTGRWESHIWDCGKQVYLGGFDT      
Sbjct:    86 RNKQETLVMKKKSRRGPRSRSSHYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAAR 145

Query:   210 XXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYR 266
                   I+FRG+ ADINF + DY+ D+++MKNL+KEEFV  LRR S   +RG SKY+
Sbjct:   146 AYDRAAIRFRGLQADINFIVDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYK 202

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 87/200 (43%), Positives = 124/200 (62%)

Query:   146 GGEVRVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQ 195
             GG + V + ++P  ++           YRGVT +R TGR+E+H+WD  C        G+Q
Sbjct:   157 GGALAVVETATP--RRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 214

Query:   196 VYLGGFDTXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQS 255
             VYLGG+D             +K+ G     NF + +YE ++++MK++T++EFV  +RR+S
Sbjct:   215 VYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKS 274

Query:   256 TGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGR 314
             +GFSRG+S YRGVT H + GRW+AR+G+  G K +YLG F +E EAA AYD AAIK  G 
Sbjct:   275 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGL 334

Query:   315 EAVTNFEPSTYEGEMITEGS 334
              AVTNFE + Y+ + I E S
Sbjct:   335 NAVTNFEINRYDVKAILESS 354

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 85/188 (45%), Positives = 119/188 (63%)

Query:   154 QSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDT 203
             ++SP  KK           YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D 
Sbjct:   185 EASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDK 244

Query:   204 XXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSS 263
                         +K+ G     NF +++YE ++++MK++T++EFV  LRR+S+GFSRG+S
Sbjct:   245 EDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGAS 304

Query:   264 KYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEP 322
              YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+ 
Sbjct:   305 MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDI 364

Query:   323 STYEGEMI 330
             S Y+ + I
Sbjct:   365 SRYDVKSI 372

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 83/173 (47%), Positives = 114/173 (65%)

Query:   173 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVD 222
             YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D             +K+ G  
Sbjct:   191 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPS 250

Query:   223 ADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMG 281
                NF + +YE ++++MKN+T++EFV  +RR+S+GFSRG+S YRGVT H + GRW+AR+G
Sbjct:   251 TTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIG 310

Query:   282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGS 334
             +  G K +YLG F +E EAA AYD AAIK  G  AVTNFE + Y+ + I E +
Sbjct:   311 RVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESN 363

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 84/193 (43%), Positives = 118/193 (61%)

Query:   153 QQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFD 202
             Q    V +K          QYRGVT +R TGR+E+H+WD  C        G+QVYLGG+D
Sbjct:   204 QVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYD 263

Query:   203 TXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGS 262
                          +K+ G    +NF L++YE +++++ N+ ++EFV +LRR S+GFSRG+
Sbjct:   264 EEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGA 323

Query:   263 SKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFE 321
             S YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+
Sbjct:   324 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFD 383

Query:   322 PSTYEGEMITEGS 334
              + Y+ + I   S
Sbjct:   384 INRYDVKRICSSS 396

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 91/198 (45%), Positives = 121/198 (61%)

Query:   173 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVD 222
             YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D             +K+ G  
Sbjct:   232 YRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGST 291

Query:   223 ADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMG 281
             A  NF ++ Y  ++++M ++TK+EF+  LRR+S+GFSRG+S YRGVT H + GRW+AR+G
Sbjct:   292 ATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIG 351

Query:   282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNE-GGD- 339
             +  G K +YLG F +E EAA AYD AAIK  G  AVTNFE + Y+ E +   S   GG  
Sbjct:   352 RVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIEAVMNSSLPVGGAA 411

Query:   340 ---HNLDLNLGISSSFGS 354
                H L L L   SS  S
Sbjct:   412 AKRHKLKLALESPSSSSS 429

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 85/197 (43%), Positives = 119/197 (60%)

Query:   145 GGGEVRVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDC----------GK 194
             G  +V V  Q   V +K          QYRGVT +R TGR+E+H+WD           G+
Sbjct:   256 GQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGR 315

Query:   195 QVYLGGFDTXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQ 254
             QVYLGG+D             +K+ G     NF+  +Y+ +++ MKN+T++E+V  LRR+
Sbjct:   316 QVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRK 375

Query:   255 STGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNG 313
             S+GFSRG+S YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G
Sbjct:   376 SSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRG 435

Query:   314 REAVTNFEPSTYEGEMI 330
               AVTNF+ + Y+ + I
Sbjct:   436 TNAVTNFDITRYDVDRI 452

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SK03	RAP27_ARATH	No assigned EC number	0.5717	0.8441	0.7238	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-27
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	8e-25
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-24
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	9e-23
pfam00847	53	pfam00847, AP2, AP2 domain	3e-10
pfam00847	53	pfam00847, AP2, AP2 domain	3e-08

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  101 bits (255), Expect = 4e-27
 Identities = 30/64 (46%), Positives = 37/64 (57%)

Query: 264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS 323
           KYRGV     G+W A +      K ++LG FD+  EAARAYD+AA K  GR A  NF  S
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 324 TYEG 327
            Y+ 
Sbjct: 61  LYDS 64

Length = 64

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 95.8 bits (239), Expect = 8e-25
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 229
           +YRGV   R  G+W + I D   GK+V+LG FDTA  AARAYDRAA KFRG  A +NF  
Sbjct: 1   KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 230 ADYE 233
           + Y+
Sbjct: 60  SLYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 93.5 bits (233), Expect = 4e-24
 Identities = 31/61 (50%), Positives = 38/61 (62%)

Query: 263 SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEP 322
           SKYRGV     G+W A +    G + I+LG FD+  EAARAYD+AA+K  G  AV NF  
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 323 S 323
           S
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 90.0 bits (224), Expect = 9e-23
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 3/59 (5%)

Query: 171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
           S+YRGV   R  G+W + I D   G++++LG FDTA  AARAYDRAA+K RG  A +NF
Sbjct: 1   SKYRGVRQ-RPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 171 SQYRGVTFYRRTGRWESHIWDCG----KQVYLGGFDTAHAAARAYDRAAIKFRG 220
           S Y+GV + +R GRW + I D G    K+  LG F T   AARA   A +K RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 263 SKYRGVTLHKC-GRWEA--RMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNG 313
           S Y+GV   K  GRW A  R      KK   LG F +E EAARA   A +K  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.73
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.73
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.73
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.71
PHA00280	121	putative NHN endonuclease	99.63
PHA00280	121	putative NHN endonuclease	99.37
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.15
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.94
cd00652	174	TBP_TLF TATA box binding protein (TBP): Present in	82.76
cd04518	174	TBP_archaea archaeal TATA box binding protein (TBP	81.64

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.73  E-value=4.8e-18  Score=129.71  Aligned_cols=59  Identities=53%  Similarity=0.852  Sum_probs=55.5

Q ss_pred             CCcccceeecCCCcEEEEEEeC--CeEEeeCCCCCHHHHHHHHHHHHHHccCcccccccccc
Q 016650          171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (385)
Q Consensus       171 S~yRGV~~~r~~gKW~A~I~~~--gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~a~~NFp~s  230 (385)
                      |+|+||++++ +|||+|+|+.+  +|++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899999765 59999999999  99999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.73  E-value=5.9e-18  Score=130.74  Aligned_cols=63  Identities=48%  Similarity=0.748  Sum_probs=59.4

Q ss_pred             cccCeEEeecCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCCccc
Q 016650          264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYE  326 (385)
Q Consensus       264 ~yrGV~~~k~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l~G~~A~tNF~~~~y~  326 (385)
                      +|+||+++++|+|+|+|+.+.+++.++||+|+|+||||+|||.|+++++|..+.+|||++.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999877999999997666999999999999999999999999999999999999999986

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.73  E-value=7.6e-18  Score=128.62  Aligned_cols=61  Identities=51%  Similarity=0.788  Sum_probs=56.2

Q ss_pred             ccccCeEEeecCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 016650          263 SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS  323 (385)
Q Consensus       263 S~yrGV~~~k~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l~G~~A~tNF~~~  323 (385)
                      |+|+||+++++|+|+|+|+....|+.++||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999996444499999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.71  E-value=1.6e-17  Score=128.27  Aligned_cols=61  Identities=57%  Similarity=0.920  Sum_probs=57.8

Q ss_pred             CcccceeecCCCcEEEEEEe--CCeEEeeCCCCCHHHHHHHHHHHHHHccCccccccccccchh
Q 016650          172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE  233 (385)
Q Consensus       172 ~yRGV~~~r~~gKW~A~I~~--~gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~a~~NFp~s~y~  233 (385)
                      +|+||++ +++|||+|+|++  +++++|||+|+|+||||+|||.|+++++|..+.+|||.++|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5899997 567999999999  899999999999999999999999999999999999999886

>PHA00280 putative NHN endonuclease

Probab=99.63  E-value=3.5e-16  Score=135.84  Aligned_cols=74  Identities=19%  Similarity=0.299  Sum_probs=66.8

Q ss_pred             cccccCCCccccccCCCCCCCCCCCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHccCcccc
Q 016650          148 EVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD  224 (385)
Q Consensus       148 ~LR~at~~~n~~nk~r~~~~~~sS~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~a~  224 (385)
                      -||++|+.+|..|+++  +++++|||+||+|++..+||+|+|+.+||+++||+|+++|+|+.||+ ++.+|+|.+|.
T Consensus        46 NLr~~T~~eN~~N~~~--~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         46 NLRLALPKENSWNMKT--PKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HhhhcCHHHHhcccCC--CCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            4788999888888764  45889999999999999999999999999999999999999999997 77899998764

>PHA00280 putative NHN endonuclease

Probab=99.37  E-value=2.1e-12  Score=112.37  Aligned_cols=104  Identities=15%  Similarity=0.083  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHccCcccc---cccc-ccchhhhhhhhhhhhhhhHhhhhhcccccccCCcccccCeEEee-cCeEeEEEc
Q 016650          207 AARAYDRAAIKFRGVDAD---INFN-LADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMG  281 (385)
Q Consensus       207 AArAYD~Aa~kl~G~~a~---~NFp-~s~y~~el~~m~~lSKEE~V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~  281 (385)
                      +-+++..+...++|.-..   +.+- -......+.-|...+..|.....+.    .++++|+|+||+|++ .|||+|+| 
T Consensus        11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~----~~~N~SG~kGV~~~k~~~kw~A~I-   85 (121)
T PHA00280         11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKT----PKSNTSGLKGLSWSKEREMWRGTV-   85 (121)
T ss_pred             hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCC----CCCCCCCCCeeEEecCCCeEEEEE-
Confidence            345677777778884321   1111 1122345666666677666655433    346789999999987 89999999 


Q ss_pred             eecCceeeecCCCCCHHHHHHHHHHHHHHhcCCCcc
Q 016650          282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAV  317 (385)
Q Consensus       282 ~~~~gK~i~LGtFdTeeEAArAYD~Aai~l~G~~A~  317 (385)
                       .++||.++||.|+++|+|+.||+ ++++++|.+|.
T Consensus        86 -~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         86 -TAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             -EECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence             58999999999999999999997 77899998775

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.15  E-value=1.1e-10  Score=87.04  Aligned_cols=51  Identities=33%  Similarity=0.549  Sum_probs=47.1

Q ss_pred             CCcccceeecCCCcEEEEEEeC-----CeEEeeCCCCCHHHHHHHHHHHHHHccCc
Q 016650          171 SQYRGVTFYRRTGRWESHIWDC-----GKQVYLGGFDTAHAAARAYDRAAIKFRGV  221 (385)
Q Consensus       171 S~yRGV~~~r~~gKW~A~I~~~-----gK~i~LGtFdT~EeAArAYD~Aa~kl~G~  221 (385)
                      |+|+||+|++..++|+|+|++.     +|.++||.|+++++|++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999999999999999983     48999999999999999999999999873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.94  E-value=2.5e-09  Score=79.78  Aligned_cols=52  Identities=37%  Similarity=0.553  Sum_probs=45.2

Q ss_pred             ccccCeEEee-cCeEeEEEceec-C--ceeeecCCCCCHHHHHHHHHHHHHHhcCC
Q 016650          263 SKYRGVTLHK-CGRWEARMGQFL-G--KKYIYLGLFDSEVEAARAYDKAAIKCNGR  314 (385)
Q Consensus       263 S~yrGV~~~k-~gkW~A~I~~~~-~--gK~i~LGtFdTeeEAArAYD~Aai~l~G~  314 (385)
                      |+|+||++++ .++|+|+|+.+. +  +|.++||.|++++||++||+.++++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999988 899999997532 1  49999999999999999999999999873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription

Probab=82.76  E-value=29  Score=32.09  Aligned_cols=135  Identities=17%  Similarity=0.167  Sum_probs=80.1

Q ss_pred             CCCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHcc--Cccc--cccccccchhhhhhhhhhhhhh
Q 016650          170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVDA--DINFNLADYEDDMKQMKNLTKE  245 (385)
Q Consensus       170 sS~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~--G~~a--~~NFp~s~y~~el~~m~~lSKE  245 (385)
                      ..+|.||.++...-+=.+.|+..||-+--|. .++|+|..|.++.+..+.  |...  ..||....--.....--.+..+
T Consensus        33 Pe~fpgli~R~~~P~~t~lIf~sGKivitGa-ks~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~  111 (174)
T cd00652          33 PKRFPGVIMRLREPKTTALIFSSGKMVITGA-KSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLE  111 (174)
T ss_pred             CCccceEEEEcCCCcEEEEEECCCEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHH
Confidence            3688899887777788899999999887776 478888888888877763  3221  1233221100000000011122


Q ss_pred             hHhhhhhcccccccCCcccccCeEEee-cCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHh
Q 016650          246 EFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC  311 (385)
Q Consensus       246 E~V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l  311 (385)
                      ++....+...   .=....|-|+.++- ..+=.+.|  +..||-+-.|. .+++|+.+|+++-...|
T Consensus       112 ~la~~~~~~~---~YePe~fpgli~r~~~pk~t~lI--F~sGkvvitGa-ks~~~~~~a~~~i~~~L  172 (174)
T cd00652         112 ELALKHPENA---SYEPELFPGLIYRMDEPKVVLLI--FVSGKIVITGA-KSREDIYEAVEKIYPIL  172 (174)
T ss_pred             HHHhhhhccc---EECCccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            2222222111   11245788998765 34445555  78898887776 57888998987655433

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many

>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription

Probab=81.64  E-value=35  Score=31.69  Aligned_cols=136  Identities=15%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             CCCCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHccCcc--c--cccccccchhhhhhhhhhhhh
Q 016650          169 RSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVD--A--DINFNLADYEDDMKQMKNLTK  244 (385)
Q Consensus       169 ~sS~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~--a--~~NFp~s~y~~el~~m~~lSK  244 (385)
                      +..+|.||.++-+.-+=.+.|+..||-+--|. .++++|..|-++.+..+....  .  ..+|.....-.....--.+..
T Consensus        32 ~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa-ks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L  110 (174)
T cd04518          32 NPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA-KSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNL  110 (174)
T ss_pred             CCCcCcEEEEEccCCcEEEEEECCCeEEEEcc-CCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCH
Confidence            34688999987777788899999999877765 688899999888887764322  1  112222110000000001112


Q ss_pred             hhHhhhhhcccccccCCcccccCeEEee-cCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHhc
Q 016650          245 EEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN  312 (385)
Q Consensus       245 EE~V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l~  312 (385)
                      +.+...++.    -.=....|-|+.++- .-+=.+.|  +..||-+-.|. .+++|+.+|.++....+.
T Consensus       111 ~~la~~~~~----~~YePe~fpglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~  172 (174)
T cd04518         111 DAIAIGLPN----AEYEPEQFPGLVYRLDEPKVVLLL--FSSGKMVITGA-KSEEDAKRAVEKLLSRLK  172 (174)
T ss_pred             HHHHhhCCC----CccCcccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence            222222221    112346788998765 34555555  78898887776 678899999887766553

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-15
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 68.5 bits (168), Expect = 3e-15
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 6/60 (10%)

Query: 172 QYRGVTFYRRT-GRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
            YRGV   +R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A +NF
Sbjct: 2   HYRGVR--QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 264 KYRGVTLHKCGRW--EARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNF 320
            YRGV     G++  E R     G + ++LG F++  +AA AYD+AA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGAR-VWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 53/338 (15%), Positives = 100/338 (29%), Gaps = 76/338 (22%)

Query: 71  FTFNFDILKVGGDSGNV-RNENVE----QNNAASRKEFAFFPASGGGENGGGQSSGSWID 125
           F  NFD   V     ++   E ++      +A S     F+      E    +     + 
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 126 LSFD--KQQQQYQNQQPQQQEGG--GEVRVTQQSSPVVKK---SRRGP----RS-----R 169
           +++       + + +QP         +       + V  K   SR  P    R      R
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF-- 227
            ++   V      G         GK   +     A     +Y         +     F  
Sbjct: 149 PAKN--VLIDGVLG--------SGKTW-V-----ALDVCLSYKVQCKMDFKI-----FWL 187

Query: 228 NLADY---EDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFL 284
           NL +    E  ++ ++ L     ++ +    T  S  SS  +     +    +A + + L
Sbjct: 188 NLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLL 238

Query: 285 -GKKYI--YLGLFD-SEVEAARAYDKAAIKCN----GREA-VTNFEPSTYEGEMITEGSN 335
             K Y    L L +    +A  A++   + C      R   VT+F  +     +  +  +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 336 EG--GDHNLDL---NLGISSSFGSGPK-ANEGHSQFLS 367
                D    L    L         P+     + + LS
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLS 331

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.81
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.8
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	95.37
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	95.19
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	83.09

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.81  E-value=1.2e-20  Score=145.10  Aligned_cols=60  Identities=33%  Similarity=0.582  Sum_probs=55.9

Q ss_pred             cccCeEEeecCeEeEEEceec-CceeeecCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 016650          264 KYRGVTLHKCGRWEARMGQFL-GKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS  323 (385)
Q Consensus       264 ~yrGV~~~k~gkW~A~I~~~~-~gK~i~LGtFdTeeEAArAYD~Aai~l~G~~A~tNF~~~  323 (385)
                      +|+||+++++|||.|+|+.+. +|+++|||+|+|+||||+|||.|+++++|..|++|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            699999988999999997654 479999999999999999999999999999999999975

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.80  E-value=4.3e-20  Score=142.09  Aligned_cols=58  Identities=50%  Similarity=0.788  Sum_probs=54.3

Q ss_pred             CcccceeecCCCcEEEEEEe---CCeEEeeCCCCCHHHHHHHHHHHHHHccCcccccccccc
Q 016650          172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (385)
Q Consensus       172 ~yRGV~~~r~~gKW~A~I~~---~gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~a~~NFp~s  230 (385)
                      +||||++ +++|||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999996 579999999999   478999999999999999999999999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=95.37  E-value=0.0099  Score=47.03  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=25.7

Q ss_pred             CCCCCcccceeecCCCcEEEEEEeCCeEE
Q 016650          168 SRSSQYRGVTFYRRTGRWESHIWDCGKQV  196 (385)
Q Consensus       168 ~~sS~yRGV~~~r~~gKW~A~I~~~gK~i  196 (385)
                      ..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence            46799999999999999999999998864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=95.19  E-value=0.00045  Score=61.47  Aligned_cols=59  Identities=12%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             cccccCCCccccccCCCCCCCCCCCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHH
Q 016650          148 EVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAY  211 (385)
Q Consensus       148 ~LR~at~~~n~~nk~r~~~~~~sS~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAY  211 (385)
                      -||++|+++|..++.+.+..   ..++||.+ +..++|.+.|... +.++||.|+|.+|||++|
T Consensus        87 NL~~~t~~eN~~~~~~~~~~---~~~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~  145 (174)
T 1u3e_M           87 NLRWVTQKINVENQMSRGTL---NVSKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEEL  145 (174)
T ss_dssp             GEEEECHHHHHHHHHHHTCC---CCHHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHH
T ss_pred             HcEECCHHHHhhcccccCcc---cceeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHH
Confidence            47888888888776544321   22578987 6778899999988 778899999999999886

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=83.09  E-value=0.59  Score=36.93  Aligned_cols=28  Identities=32%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             CCcccccCeEEee-cCeEeEEEceecCceee
Q 016650          260 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYI  289 (385)
Q Consensus       260 r~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i  289 (385)
                      ..+|+|.||+|++ .+.|.|.-  ..+|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W--~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFF--YDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEE--EETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEE--ecCCeEe
Confidence            3479999999998 78999998  4455543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-21
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-20

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 83.2 bits (206), Expect = 8e-21
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
            YRGV   R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A +NF
Sbjct: 2   HYRGVR-QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 264 KYRGVTLHKCGRWEARMGQFLGK-KYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNF 320
            YRGV     G++ A +         ++LG F++  +AA AYD+AA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.83
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.8

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=1.5e-21  Score=148.57  Aligned_cols=60  Identities=33%  Similarity=0.577  Sum_probs=55.5

Q ss_pred             cccCeEEeecCeEeEEEcee-cCceeeecCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 016650          264 KYRGVTLHKCGRWEARMGQF-LGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS  323 (385)
Q Consensus       264 ~yrGV~~~k~gkW~A~I~~~-~~gK~i~LGtFdTeeEAArAYD~Aai~l~G~~A~tNF~~~  323 (385)
                      .||||+++++|||.|+|+.+ .+++++|||+|+|+||||+|||+|+++++|.+|.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999998899999999764 4678999999999999999999999999999999999974

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.4e-20  Score=143.12  Aligned_cols=58  Identities=50%  Similarity=0.788  Sum_probs=53.4

Q ss_pred             CcccceeecCCCcEEEEEEe---CCeEEeeCCCCCHHHHHHHHHHHHHHccCcccccccccc
Q 016650          172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (385)
Q Consensus       172 ~yRGV~~~r~~gKW~A~I~~---~gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~a~~NFp~s  230 (385)
                      +||||++ +++|||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus         2 ~yrGVr~-r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeE-CCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999996 468999999986   567999999999999999999999999999999999974