Citrus Sinensis ID: 016656
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | ||||||
| 297736512 | 503 | unnamed protein product [Vitis vinifera] | 0.966 | 0.739 | 0.732 | 1e-138 | |
| 449516782 | 490 | PREDICTED: uncharacterized protein LOC10 | 0.932 | 0.732 | 0.680 | 1e-137 | |
| 449457421 | 490 | PREDICTED: uncharacterized protein LOC10 | 0.932 | 0.732 | 0.680 | 1e-137 | |
| 225448643 | 492 | PREDICTED: uncharacterized protein LOC10 | 0.937 | 0.733 | 0.716 | 1e-134 | |
| 392938140 | 507 | plasma membrane ATP/ADP transporter TLC1 | 0.932 | 0.708 | 0.649 | 1e-128 | |
| 42567662 | 496 | TLC ATP/ADP transporter [Arabidopsis tha | 0.937 | 0.727 | 0.653 | 1e-127 | |
| 10176743 | 496 | unnamed protein product [Arabidopsis tha | 0.937 | 0.727 | 0.648 | 1e-125 | |
| 30680874 | 511 | TLC ATP/ADP transporter [Arabidopsis tha | 0.937 | 0.706 | 0.648 | 1e-125 | |
| 30680867 | 469 | TLC ATP/ADP transporter [Arabidopsis tha | 0.937 | 0.769 | 0.648 | 1e-125 | |
| 297806531 | 499 | hypothetical protein ARALYDRAFT_487324 [ | 0.911 | 0.703 | 0.668 | 1e-125 |
| >gi|297736512|emb|CBI25383.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 276/377 (73%), Positives = 307/377 (81%), Gaps = 5/377 (1%)
Query: 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
++S L S+FVT+HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3 ARSYLHGILSMFVTVHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62
Query: 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
VGSL LTL+AAPVSTLIFSLPNLSKAKALVLIHRFFSVSL+VFF+LW SSS S
Sbjct: 63 VGSLALTLVAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLVVFFVLWHSSS-----AGHS 117
Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
S + D VSS KED + V Q +S W HGWFYV VR+G FLWV+LLNLITIS
Sbjct: 118 SSKWKGSDFVSSTLKEDSEVDVSQPGAEHSVSWDVHGWFYVLVRIGLFLWVSLLNLITIS 177
Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
STWAR+IDVMDSESG RLFGFIGAGATLGQLFGSLFA GMA+LGP+LLLFAA LMELAAQ
Sbjct: 178 STWARIIDVMDSESGLRLFGFIGAGATLGQLFGSLFATGMAWLGPFLLLFAALLMELAAQ 237
Query: 248 SSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG 307
SSKGI + I EE+ +RKAD D ++ ADGQ AP K SP+S TS++ P +WA+LDG
Sbjct: 238 SSKGIIRHISHTSEEMSLIRKADPDQQNEADGQAAPVKKGSSPKSPTSLMNPQIWAMLDG 297
Query: 308 LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFI 367
LRLI SS YLL VSLFLWLSAVVSSFFYFQKVTVIAMTVS+ + RR+L A+INSFIAVFI
Sbjct: 298 LRLILSSTYLLYVSLFLWLSAVVSSFFYFQKVTVIAMTVSTPVERRKLFAQINSFIAVFI 357
Query: 368 LAGQLTLTGTSFLLLGL 384
LAGQLTLTG + G+
Sbjct: 358 LAGQLTLTGRILTIAGV 374
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516782|ref|XP_004165425.1| PREDICTED: uncharacterized protein LOC101229022 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/379 (68%), Positives = 301/379 (79%), Gaps = 20/379 (5%)
Query: 6 IISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPG 65
IISKSRLDA S FVT+HPHE SALLHS+ CFFFILSAYFVVLPLRDEGAISLGLS LP
Sbjct: 3 IISKSRLDALVSAFVTVHPHEISALLHSAFCFFFILSAYFVVLPLRDEGAISLGLSNLPS 62
Query: 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKL 125
LFVGSL+LTLIAAPVS+ IFSLPNLSK KALVLIHRFFSVSL+ FF+LWQSSS G+ SK
Sbjct: 63 LFVGSLVLTLIAAPVSSHIFSLPNLSKGKALVLIHRFFSVSLVAFFILWQSSSTGHSSK- 121
Query: 126 ESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185
DPK DQ S+ +S W HGWFYV+VR+GFFLWVALLNLIT
Sbjct: 122 ------------------DPKDYGDQSSSISSIGWDKHGWFYVAVRIGFFLWVALLNLIT 163
Query: 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELA 245
ISSTWARVIDVMDSESG+RLFGFIGAGATLGQLFGSLFA MA+LGP+LLLF+A LME A
Sbjct: 164 ISSTWARVIDVMDSESGARLFGFIGAGATLGQLFGSLFATVMAWLGPFLLLFSAILMEFA 223
Query: 246 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAIL 305
A+ S+GI +++P EEL +R AD + ++G A K SP++++++ KPH WAI
Sbjct: 224 ARLSEGINQDMPHPGEELSLIRDADPSHENDSEGLGTSAFKGHSPKANSTM-KPHPWAIF 282
Query: 306 DGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAV 365
DG+ LIFSS+YL+ V+LFLWLSAV+SSFFY QKV +IA+TV++SLGRR+L A INSFIAV
Sbjct: 283 DGMMLIFSSSYLMCVALFLWLSAVISSFFYLQKVGIIAITVTTSLGRRKLFALINSFIAV 342
Query: 366 FILAGQLTLTGTSFLLLGL 384
FILAGQLT+TG + G+
Sbjct: 343 FILAGQLTVTGHILTIAGV 361
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457421|ref|XP_004146447.1| PREDICTED: uncharacterized protein LOC101212005 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/379 (68%), Positives = 301/379 (79%), Gaps = 20/379 (5%)
Query: 6 IISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPG 65
IISKSRLDA S FVT+HPHE SALLHS+ CFFFILSAYFVVLPLRDEGAISLGLS LP
Sbjct: 3 IISKSRLDAIVSAFVTVHPHEISALLHSAFCFFFILSAYFVVLPLRDEGAISLGLSNLPS 62
Query: 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKL 125
LFVGSL+LTLIAAPVS+ IFSLPNLSK KALVLIHRFFSVSL+ FF+LWQSSS G+ SK
Sbjct: 63 LFVGSLVLTLIAAPVSSHIFSLPNLSKGKALVLIHRFFSVSLVAFFILWQSSSTGHSSK- 121
Query: 126 ESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185
DPK DQ S+ +S W HGWFYV+VR+GFFLWVALLNLIT
Sbjct: 122 ------------------DPKDYGDQSSSISSIGWDKHGWFYVAVRIGFFLWVALLNLIT 163
Query: 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELA 245
ISSTWARVIDVMDSESG+RLFGFIGAGATLGQLFGSLFA MA+LGP+LLLF+A LME A
Sbjct: 164 ISSTWARVIDVMDSESGARLFGFIGAGATLGQLFGSLFATVMAWLGPFLLLFSAILMEFA 223
Query: 246 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAIL 305
A+ S+GI +++P EEL +R AD + ++G A K SP++++++ KPH WAI
Sbjct: 224 ARLSEGINQDMPHPGEELSLIRDADPSHENDSEGLGTSAFKGHSPKANSTM-KPHPWAIF 282
Query: 306 DGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAV 365
DG+ LIFSS+YL+ V+LFLWLSAV+SSFFY QKV +IA+TV++SLGRR+L A INSFIAV
Sbjct: 283 DGMMLIFSSSYLMCVALFLWLSAVISSFFYLQKVGIIAITVTTSLGRRKLFALINSFIAV 342
Query: 366 FILAGQLTLTGTSFLLLGL 384
FILAGQLT+TG + G+
Sbjct: 343 FILAGQLTVTGHILTIAGV 361
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448643|ref|XP_002279449.1| PREDICTED: uncharacterized protein LOC100258787 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/377 (71%), Positives = 302/377 (80%), Gaps = 16/377 (4%)
Query: 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
++S L S+FVT+HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3 ARSYLHGILSMFVTVHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62
Query: 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
VGSL LTL+AAPVSTLIFSLPNLSKAKALVLIHRFFSVSL+VFF+LW SSS
Sbjct: 63 VGSLALTLVAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLVVFFVLWHSSSA-------- 114
Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
SS+ +D + V Q +S W HGWFYV VR+G FLWV+LLNLITIS
Sbjct: 115 --------GHSSSKWKDSEVDVSQPGAEHSVSWDVHGWFYVLVRIGLFLWVSLLNLITIS 166
Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
STWAR+IDVMDSESG RLFGFIGAGATLGQLFGSLFA GMA+LGP+LLLFAA LMELAAQ
Sbjct: 167 STWARIIDVMDSESGLRLFGFIGAGATLGQLFGSLFATGMAWLGPFLLLFAALLMELAAQ 226
Query: 248 SSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG 307
SSKGI + I EE+ +RKAD D ++ ADGQ AP K SP+S TS++ P +WA+LDG
Sbjct: 227 SSKGIIRHISHTSEEMSLIRKADPDQQNEADGQAAPVKKGSSPKSPTSLMNPQIWAMLDG 286
Query: 308 LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFI 367
LRLI SS YLL VSLFLWLSAVVSSFFYFQKVTVIAMTVS+ + RR+L A+INSFIAVFI
Sbjct: 287 LRLILSSTYLLYVSLFLWLSAVVSSFFYFQKVTVIAMTVSTPVERRKLFAQINSFIAVFI 346
Query: 368 LAGQLTLTGTSFLLLGL 384
LAGQLTLTG + G+
Sbjct: 347 LAGQLTLTGRILTIAGV 363
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|392938140|gb|AFM94007.1| plasma membrane ATP/ADP transporter TLC1 [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/371 (64%), Positives = 289/371 (77%), Gaps = 12/371 (3%)
Query: 6 IISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPG 65
++ + RL+A S V + PHETSALLHS++ FFFILSAYFVVLPLRDEGAISLGLS LPG
Sbjct: 1 MVDRRRLEAILSTIVNVKPHETSALLHSATSFFFILSAYFVVLPLRDEGAISLGLSNLPG 60
Query: 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKL 125
LF+GSL+LTLIAAP+STL+FSLPNLSK +ALVLIHRFFS+SL++FF+LW +S+ G+ KL
Sbjct: 61 LFIGSLLLTLIAAPLSTLLFSLPNLSKGRALVLIHRFFSLSLVLFFILWHTSTNGFTMKL 120
Query: 126 ESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185
AV++ D D + S W DH W+Y+ VRMG FLW+ALLNLIT
Sbjct: 121 ----------AVAAPLVHDQNFNSDHSNVLQSG-WDDHSWYYIFVRMGLFLWIALLNLIT 169
Query: 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELA 245
ISSTWARVIDVM+SESGSRLFGFIGAGATLGQLFGSLFAAGMA+LG +LLL AA LMELA
Sbjct: 170 ISSTWARVIDVMNSESGSRLFGFIGAGATLGQLFGSLFAAGMAWLGSFLLLVAAFLMELA 229
Query: 246 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAIL 305
AQSSKGI ++ P EE P+ K D D SG + T A SP+ +++ KP LW +
Sbjct: 230 AQSSKGISQDAPHLSEEDTPMIKLD-DQESGVNRNTRSTANGSSPKIASTPAKPQLWVMF 288
Query: 306 DGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAV 365
DGL LI +S+YL+ VSLFLWLSAVVSSFFYFQKV++IA+T SS+ GRR+L AEINSFIA+
Sbjct: 289 DGLWLILASSYLIYVSLFLWLSAVVSSFFYFQKVSIIALTTSSAAGRRKLFAEINSFIAL 348
Query: 366 FILAGQLTLTG 376
FI +GQ+TLTG
Sbjct: 349 FIFSGQITLTG 359
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Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567662|ref|NP_196150.2| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003472|gb|AED90855.1| TLC ATP/ADP transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/381 (65%), Positives = 292/381 (76%), Gaps = 20/381 (5%)
Query: 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
++ RLDA S VT+HPHE ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62
Query: 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S
Sbjct: 63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114
Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
++ S +A E + G+ A + W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166
Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
STWAR+IDVMDSESG+RLFGF+GAGATLGQLFGS+FAA A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDSESGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226
Query: 248 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 303
SSKGI +I + EEL PLR D+D R T+P + KV SP+S S +P WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286
Query: 304 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 363
ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346
Query: 364 AVFILAGQLTLTGTSFLLLGL 384
AVFIL GQLTLTG + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10176743|dbj|BAB09974.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/381 (64%), Positives = 291/381 (76%), Gaps = 20/381 (5%)
Query: 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
++ RLDA S VT+HPHE ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62
Query: 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S
Sbjct: 63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114
Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
++ S +A E + G+ A + W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166
Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
STWAR+IDVMD +SG+RLFGF+GAGATLGQLFGS+FAA A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226
Query: 248 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 303
SSKGI +I + EEL PLR D+D R T+P + KV SP+S S +P WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286
Query: 304 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 363
ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346
Query: 364 AVFILAGQLTLTGTSFLLLGL 384
AVFIL GQLTLTG + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30680874|ref|NP_850772.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003473|gb|AED90856.1| TLC ATP/ADP transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/381 (64%), Positives = 291/381 (76%), Gaps = 20/381 (5%)
Query: 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
++ RLDA S VT+HPHE ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62
Query: 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S
Sbjct: 63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114
Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
++ S +A E + G+ A + W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166
Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
STWAR+IDVMD +SG+RLFGF+GAGATLGQLFGS+FAA A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226
Query: 248 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 303
SSKGI +I + EEL PLR D+D R T+P + KV SP+S S +P WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286
Query: 304 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 363
ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346
Query: 364 AVFILAGQLTLTGTSFLLLGL 384
AVFIL GQLTLTG + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30680867|ref|NP_850771.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003471|gb|AED90854.1| TLC ATP/ADP transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/381 (64%), Positives = 291/381 (76%), Gaps = 20/381 (5%)
Query: 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
++ RLDA S VT+HPHE ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62
Query: 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S
Sbjct: 63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPT-------- 114
Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
++ S +A E + G+ A + W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 115 -------ESNSKDAVEAASGLTNDGANAATG-WDNHGWFYISVRVGFFLWVALLNLVAIS 166
Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
STWAR+IDVMD +SG+RLFGF+GAGATLGQLFGS+FAA A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226
Query: 248 SSKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 303
SSKGI +I + EEL PLR D+D R T+P + KV SP+S S +P WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286
Query: 304 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 363
ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346
Query: 364 AVFILAGQLTLTGTSFLLLGL 384
AVFIL GQLTLTG + G+
Sbjct: 347 AVFILIGQLTLTGRILTVAGV 367
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806531|ref|XP_002871149.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata] gi|297316986|gb|EFH47408.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/371 (66%), Positives = 287/371 (77%), Gaps = 20/371 (5%)
Query: 9 KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFV 68
+ RLDA S VT+HPHE ALLHSSSCFFF+LSAYFVVLPLRDEGAISLGLSKLPGLFV
Sbjct: 4 RIRLDAVISTVVTVHPHEIPALLHSSSCFFFVLSAYFVVLPLRDEGAISLGLSKLPGLFV 63
Query: 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESV 128
GSL LTLIAAP+ST IFSLPNLSK+KALV+IHRFFS+SL++ FLLW +S SK
Sbjct: 64 GSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFLLWMASPTESTSK---- 119
Query: 129 SHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188
DAV + A K +D + W +H WFY+SVR+GFFLWVALLNL+ ISS
Sbjct: 120 ------DAVEA-ASSLTKVGID-----GANGWDNHSWFYISVRVGFFLWVALLNLVAISS 167
Query: 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQS 248
TWAR+IDVMDSESG+RLFGF+GAGATLGQLFGS+FAA A++GPYLLLFAA LMELAAQ+
Sbjct: 168 TWARIIDVMDSESGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMELAAQA 227
Query: 249 SKGIYKEIPRRPEELPPLRKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWAI 304
SKGI +I + EEL PLR D+D R T+P + KV SP+S S +P LWAI
Sbjct: 228 SKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTSRPQLWAI 287
Query: 305 LDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIA 364
DG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+A
Sbjct: 288 FDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFVA 347
Query: 365 VFILAGQLTLT 375
VFIL GQLTLT
Sbjct: 348 VFILIGQLTLT 358
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 385 | ||||||
| TAIR|locus:2153489 | 511 | AT5G05310 [Arabidopsis thalian | 0.896 | 0.675 | 0.621 | 1.1e-108 |
| TAIR|locus:2153489 AT5G05310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 227/365 (62%), Positives = 265/365 (72%)
Query: 8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
++ RLDA S VT+HPHE ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62
Query: 68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRXXXXXXXXXXXXXXXXXIGYLSKLES 127
VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHR + +L + S
Sbjct: 63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLV----------LCFLLWMAS 112
Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
+ S DAV E + G+ A + W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct: 113 PTESNSKDAV-----EAASGLTNDGANA-ATGWDNHGWFYISVRVGFFLWVALLNLVAIS 166
Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
STWAR+IDVMD +SG+RLFGF+GAGATLGQLFGS+FAA A++GPYLLLFAA LME AAQ
Sbjct: 167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226
Query: 248 SSKGIYKEIXXXXXXXXXXXKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 303
SSKGI +I D+D R T+P + KV SP+S S +P WA
Sbjct: 227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286
Query: 304 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 363
ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct: 287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346
Query: 364 AVFIL 368
AVFIL
Sbjct: 347 AVFIL 351
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.136 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 385 341 0.00095 116 3 11 22 0.46 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 615 (65 KB)
Total size of DFA: 196 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.73u 0.11s 25.84t Elapsed: 00:00:01
Total cpu time: 25.73u 0.11s 25.84t Elapsed: 00:00:01
Start: Mon May 20 19:13:38 2013 End: Mon May 20 19:13:39 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 385 | |||
| COG3202 | 509 | COG3202, COG3202, ATP/ADP translocase [Energy prod | 1e-06 |
| >gnl|CDD|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 58/405 (14%), Positives = 114/405 (28%), Gaps = 90/405 (22%)
Query: 2 TMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDE------GA 55
M + S + +E L + FF IL Y ++ L+D GA
Sbjct: 1 MMSTSEEEKYFSKLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGA 60
Query: 56 ISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF-FLLW 114
S+ K G+ ++I T+I + + L++ K +I FF +F F+++
Sbjct: 61 ESISFLKTWGVLPSAVIFTIIYQKLLNI------LTREKVFYIILGFFLGFFALFAFVIY 114
Query: 115 QSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHG-----WFYVS 169
P + S D WF +
Sbjct: 115 ------------------------------PYKDILHPDPEFSRDLFADLPMFLKWFILI 144
Query: 170 VR----MGFFLWVALLNLITISST-WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA 224
V F++ L + +S W ++ E R + G GA + L
Sbjct: 145 VGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204
Query: 225 AGMAFLGPYLLLFAACLM------------ELAAQSSKGIYKEIPRRPEELPPLRKADSD 272
+ ++ L L+ +A + I + + P +K
Sbjct: 205 SWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKK 264
Query: 273 PRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSS 332
+ +++ ++I S YL +++L + V +
Sbjct: 265 KKLKL-------------------------GLIESFKMILRSKYLGAIALLVLAYGVSIN 299
Query: 333 FFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 377
+ I ++ + + V L L
Sbjct: 300 LVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSN 344
|
Length = 509 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 100.0 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 100.0 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.48 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.45 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.39 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.39 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.38 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.37 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.36 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.31 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.3 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.28 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.26 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.26 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.25 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.25 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.24 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.24 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.24 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.24 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.23 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.23 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.22 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.22 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.18 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.17 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.17 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.16 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.15 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.14 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.14 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.14 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.13 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.13 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.13 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.11 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.09 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.09 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.09 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.09 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.08 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.07 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.04 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.04 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.02 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.02 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.01 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.99 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.99 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.99 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.99 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.95 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.88 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.87 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.87 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.84 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.84 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.84 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.83 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.82 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.81 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.8 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.79 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.78 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.78 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.78 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.76 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.74 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.71 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.67 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.67 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.66 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.66 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.63 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.62 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.62 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.6 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.57 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.54 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.54 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.5 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.49 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.43 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.35 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.28 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.27 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.25 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.25 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.24 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.22 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.22 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.21 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.19 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.18 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.18 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.18 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.17 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.16 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.14 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.1 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.06 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.05 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.03 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.03 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.02 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.97 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.97 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 97.93 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.93 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.93 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 97.91 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.91 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 97.91 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 97.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.87 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.85 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.84 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 97.84 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.84 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.82 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.8 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 97.8 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.79 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 97.77 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.75 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 97.73 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 97.72 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.72 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.71 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 97.7 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.69 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 97.69 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.69 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.68 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.66 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.61 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 97.59 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.58 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.58 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.55 | |
| PRK10504 | 471 | putative transporter; Provisional | 97.49 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.47 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.46 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.45 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.44 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.42 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.39 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.39 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 97.3 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.29 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 97.27 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 97.26 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 97.26 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.25 | |
| PRK10054 | 395 | putative transporter; Provisional | 97.22 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 97.2 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.2 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 97.19 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 97.19 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.15 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.09 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.08 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.06 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 96.96 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 96.95 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 96.9 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 96.89 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 96.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 96.84 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 96.82 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.82 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 96.76 | |
| PRK11043 | 401 | putative transporter; Provisional | 96.65 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 96.64 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 96.6 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 96.58 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 96.53 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 96.49 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.47 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 96.43 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.35 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 96.25 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.23 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.12 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 95.8 | |
| PRK11462 | 460 | putative transporter; Provisional | 95.74 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 95.69 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 95.68 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 95.51 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 95.42 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 95.29 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.22 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 95.05 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 95.02 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 94.99 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.8 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 94.39 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.23 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 93.53 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 93.46 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.11 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 93.05 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 92.46 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 92.09 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 91.99 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 91.45 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 90.26 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 90.09 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 90.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 88.81 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 87.3 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 87.16 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 86.31 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 86.29 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 83.12 |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=452.12 Aligned_cols=313 Identities=16% Similarity=0.189 Sum_probs=265.1
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc---cCccchhHHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHH
Q 016656 22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS---LGLSKLPGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALV 97 (385)
Q Consensus 22 i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s---~Gae~lp~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~ 97 (385)
|||+|.++++++++++||++++|+++||+||+++++ .|+|.+||+|+.+ .|++++++|+|++++| |++|+++++
T Consensus 1 ~~~~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~--~~~~~~lf~ 78 (472)
T TIGR00769 1 IEVHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN--ILSKEALFY 78 (472)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHhHH
Confidence 689999999999999999999999999999999995 5889999999976 6677888999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHH
Q 016656 98 LIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLW 177 (385)
Q Consensus 98 ~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw 177 (385)
+++.+|+.+|++|++++++. +|.+||+...|.++...++.+.+. .-+.++|.+. +||+|
T Consensus 79 ~~~~~F~~~f~lF~~vl~p~----------------~~~~~p~~~~~~~~~~~~~~~~~~-i~~~~~W~~~----~FYv~ 137 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIYPL----------------SDLLHPTALADKLLSLLPPGFMGF-IAILRIWSFA----LFYVM 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcc----------------hhhcCCcHHHHHHHhhcchhhHHH-HHHHhhhhHH----HHHHH
Confidence 99999999999999999976 466777777777777766555543 2256889986 89999
Q ss_pred HHHHHHHHHH-HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh--------HhHH------HHHHHHHHH
Q 016656 178 VALLNLITIS-STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF--------LGPY------LLLFAACLM 242 (385)
Q Consensus 178 ~~~~~~~~~s-lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~--------~g~~------lll~aa~l~ 242 (385)
.|+||++++| +||+++||+|++|||||+||++++|+|+|.++||.++.+++. .+++ ++.+++++.
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 217 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSG 217 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999872 2222 445555566
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHH
Q 016656 243 ELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSL 322 (385)
Q Consensus 243 ~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~ 322 (385)
++.+.+.+++.++... +++.. +.++ +++++++|+++.+|+|.+++|||++.|++
T Consensus 218 ~~~~~~~~~l~~~~~~-------------~~~~~-~~~~------------~~~k~k~k~~~~es~k~i~~S~yL~~ia~ 271 (472)
T TIGR00769 218 LAIILLYWWVNRNVLT-------------DPRSY-NPAL------------KEKKVKPKMSTMESLKFLVSSPYILDLAL 271 (472)
T ss_pred HHHHHHHHHHHhcccC-------------Ccccc-chhh------------ccccCCCCCCHHHHHHHHHhCHHHHHHHH
Confidence 6666666655443321 11111 0000 01223337899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 323 FLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 323 ~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
++++|++++|++|++||+++++.|||++|+++|+|.++.++|++++++|++. ++++||+|.
T Consensus 272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw 332 (472)
T TIGR00769 272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGW 332 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999999998 999999995
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=436.88 Aligned_cols=330 Identities=17% Similarity=0.257 Sum_probs=275.7
Q ss_pred hhhhhHHHHhhhccCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccchhHHHH-HHHHHHHHHHHHHHHhhC
Q 016656 9 KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLFV-GSLILTLIAAPVSTLIFS 86 (385)
Q Consensus 9 ~~~~~~~~~~~~~i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~lp~l~~-~~~~~~~l~~p~y~~L~~ 86 (385)
+++..++-+++|||+++|.+|++++.+++||++++|+++|++||+++++ .|+|.+|++++ +.+|++++++.+|+|++|
T Consensus 5 ~~~~~~~~~~~~pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n 84 (491)
T PF03219_consen 5 EKEFSKLRSIFWPIHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSN 84 (491)
T ss_pred hhhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778889999999999999999999999999999999999999999 79999999988 789999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccch
Q 016656 87 LPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWF 166 (385)
Q Consensus 87 ~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~ 166 (385)
+++|++++++++.+|..+|.+|++.++|+ +|.+||+...+.++...++++.++ ..+.+||.
T Consensus 85 --~~s~~~lFy~~~~~F~~fF~~f~~vlyP~----------------~~~lhp~~~~~~~~~~~~~~~~~~-i~~~~~Wt 145 (491)
T PF03219_consen 85 --RLSREKLFYIIIIPFLGFFALFAFVLYPN----------------RDILHPDAFADKLLAILPPGFKGF-IAMFRNWT 145 (491)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHHHHHhhc----------------hhhcCCCHHHHHhhhhccchHHHH-HHHHHHHH
Confidence 99999999999999999999999999875 567777766666555554443333 22569999
Q ss_pred hhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh---------HhHH--H
Q 016656 167 YVSVRMGFFLWVALLNLITIS-STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF---------LGPY--L 234 (385)
Q Consensus 167 ~~~~~~lfyiw~~~~~~~~~s-lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~---------~g~~--l 234 (385)
|. +||++.|+|+++++| +||+++||+|+.+||||+||++++|+|+|.++||.++.+++. .+.+ .
T Consensus 146 ~s----lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T PF03219_consen 146 FS----LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELS 221 (491)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHH
Confidence 98 899999999999888 899999999999999999999999999999999999999986 1222 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhc
Q 016656 235 LLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSS 314 (385)
Q Consensus 235 ll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s 314 (385)
+.....++.++...+..++++++++.. + +++.. + +.+++++|+.|.+..+|++.+++|
T Consensus 222 l~~l~~~v~~~g~~i~~~~~~~~~~vl-------~--~~~~~--~-----------~~~~~kk~k~k~s~~es~k~l~kS 279 (491)
T PF03219_consen 222 LNSLMGIVLILGIVIILLYRYMNKNVL-------T--DPRFY--P-----------SAKKKKKKKPKMSLKESFKLLLKS 279 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-------C--ccccc--h-----------hhhcccccCCCccHHHHHHHHHhC
Confidence 222222333444555566676664421 1 11110 0 001123555678999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 315 NYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 315 ~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
||++.|++++++|++++|++|++||+.+++.|||++++++|||.+.+++|++++++| +++++++||+|.
T Consensus 280 ~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW 348 (491)
T PF03219_consen 280 KYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGW 348 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999999999 667999999983
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=414.18 Aligned_cols=333 Identities=17% Similarity=0.180 Sum_probs=276.7
Q ss_pred hhhhhhhhHHHHhhhccCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccchhHHHH-HHHHHHHHHHHHHHH
Q 016656 6 IISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLFV-GSLILTLIAAPVSTL 83 (385)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~lp~l~~-~~~~~~~l~~p~y~~ 83 (385)
.-.+++-+++-+++||||++|.+|++++++++||++++|+++|++||+++++ .|+|.+|++|+ +..|++++++++|.+
T Consensus 5 ~~~~~~~~k~~~~~wpi~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~k 84 (509)
T COG3202 5 SEEEKYFSKLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQK 84 (509)
T ss_pred cccccccccchheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHH
Confidence 3345677888999999999999999999999999999999999999999999 89999999988 668899999999999
Q ss_pred hhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCcc---
Q 016656 84 IFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADW--- 160 (385)
Q Consensus 84 L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--- 160 (385)
+++ +++|++++++++.+|+.+|++|++.++|....+|++|++.+++.. .+|+ ++ .|
T Consensus 85 l~~--~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~---------------~~p~---~l-~~~il 143 (509)
T COG3202 85 LLN--ILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFA---------------DLPM---FL-KWFIL 143 (509)
T ss_pred HHh--hcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHh---------------hCCc---cc-eeeeE
Confidence 999 999999999999999999999999999987767777766666653 2222 44 67
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-H---h---H
Q 016656 161 GDHGWFYVSVRMGFFLWVALLNLITIS-STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-L---G---P 232 (385)
Q Consensus 161 ~~~~w~~~~~~~lfyiw~~~~~~~~~s-lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~---g---~ 232 (385)
+.++|.|+ +||+|.|+|+++++| +||+++||+|+.||+||+||+++.++|++.+++|.++.++++ . . .
T Consensus 144 i~~~Ws~s----~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~ 219 (509)
T COG3202 144 IVGEWSYS----LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFK 219 (509)
T ss_pred eecchHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHH
Confidence 35899997 899999999999999 999999999999999999999999999999999999999972 1 1 1
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHH
Q 016656 233 Y-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLI 311 (385)
Q Consensus 233 ~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i 311 (385)
. .+..-.++..+....+..++|++++... ++++...+ ++.++++++.|.+..++++++
T Consensus 220 ~~~~~~~~~vi~~~~~i~~~l~~~~~r~il---------~~~~f~~~------------~~~kk~~~k~k~~~~~s~k~i 278 (509)
T COG3202 220 DLLLQILFIVIVILGIIAILLYRYINRNVL---------TDPLFYLR------------AKKKKKKKKLKLGLIESFKMI 278 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------cCcchhHH------------HhcccccccccCcHHHHHHHH
Confidence 1 1211112222333344455565554321 11111000 001123556678999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 312 FSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 312 ~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
.||||++.|++++++|++++|++|.+||+.+++.|++++++++|+|+++.++|+++++++++.+|+++||.|-
T Consensus 279 ~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW 351 (509)
T COG3202 279 LRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW 351 (509)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999983
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-11 Score=115.26 Aligned_cols=267 Identities=14% Similarity=0.081 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHH
Q 016656 33 SSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (385)
Q Consensus 33 ~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf 110 (385)
.++..|+..++..+..+.-+.+..+.|.+.. .++.........+..|+.|+++| |+||||++.......++..+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALAD--RYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHH--hhchhHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777554333 34344445566889999999999 9999999988777665555554
Q ss_pred HHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 016656 111 FLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTW 190 (385)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfW 190 (385)
.+....... ..| ++++ .|.+ ..+.+........
T Consensus 82 ~~~~~~~~~--------------------------------------~~~----~~~~--~~~l---~g~~~~~~~~~~~ 114 (365)
T TIGR00900 82 PFVALLGGL--------------------------------------NIW----QVYV--LAGI---LAIAQAFFTPAYQ 114 (365)
T ss_pred HHHHHcCCC--------------------------------------cHH----HHHH--HHHH---HHHHHHHHHHHHH
Confidence 443221100 022 1222 1222 3444555666888
Q ss_pred HHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 016656 191 ARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRK 268 (385)
Q Consensus 191 a~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~ 268 (385)
+++.|.++++|+.|.+++...+.++|.++||.+++.+. ..|.. .+.+.++...++......+ +. ++ +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~----~~--~---- 183 (365)
T TIGR00900 115 AMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV-RI----PE--L---- 183 (365)
T ss_pred HHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc-cc----cc--C----
Confidence 99999999999999999999999999999999999887 44543 5555554444443332221 11 10 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcC
Q 016656 269 ADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFY-FQKVTVIAMTVS 347 (385)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~-f~~~~~v~~~~~ 347 (385)
+ ++ + .+ + .+++...+..++++.++++|.+..+++..+++........ .....+..+.+.
T Consensus 184 ~--~~--~--~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (365)
T TIGR00900 184 A--AS--E--IQ---------A-----LSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLG 243 (365)
T ss_pred C--Cc--c--cc---------c-----cchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence 0 00 0 00 0 0001112456778889999999887777666655443332 111222222233
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 348 SSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 348 ~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.+++. .|.+....++..++.+.+. +++.+|+|
T Consensus 244 ~~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 275 (365)
T TIGR00900 244 RGSTH---YGWVLAAFGLGALLGALLL-GLLGRYFK 275 (365)
T ss_pred CchHH---HHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 22233 5666667777776666654 68888876
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=117.40 Aligned_cols=262 Identities=15% Similarity=0.102 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
+...++-.|+..++..+.......+..+.|.+ ...++..+......++.|+.|+++| |+||||++.+....+++..
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laD--r~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFAD--SFPKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhh--ccCCchhhHHHHHHHHHHH
Confidence 44455556776766666655555555455443 3445554555566899999999999 9999999999998887665
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++... .. +.|.+ .+........
T Consensus 83 ~~~~~~~~-------------------------------------------~~---------~~r~l---~G~~~a~~~p 107 (393)
T PRK11195 83 LLMLFGIH-------------------------------------------PL---------LAYGL---VGIGAAAYSP 107 (393)
T ss_pred HHHHHHHH-------------------------------------------HH---------HHHHH---HHHHHHHHHH
Confidence 55443211 00 11322 3444566677
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPL 266 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~ 266 (385)
...+++.|++++||+.|..|+.+.+.++|.++||.+++.+...... ++.+.+.+..++...... .++.+
T Consensus 108 a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~----l~~~~------ 177 (393)
T PRK11195 108 AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLF----IPRLG------ 177 (393)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCc------
Confidence 8899999999999999999999999999999999999998754433 343333332233222111 11100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016656 267 RKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTV 346 (385)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~ 346 (385)
. + ++ .. + .+.++...+..++.+.++++|.+........++........+......++.+
T Consensus 178 --~--~--~~--~~----------~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 236 (393)
T PRK11195 178 --A--R--RP--GQ----------S---WNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL 236 (393)
T ss_pred --c--c--cc--cc----------C---CCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0 00 00 0 0011111244567788999999776555444433333333333323333333
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 347 SSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 347 ~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
..++.. .|......++..++...+. +++.+|.|
T Consensus 237 g~s~~~---~G~~~~~~~~g~i~g~~~~-~~l~~~~~ 269 (393)
T PRK11195 237 GITLNQ---PAYLQAVVAIGIAVGAGAA-ARLVTLET 269 (393)
T ss_pred CCChhH---HHHHHHHHHHHHHHHHHHH-HHHhcCCc
Confidence 332222 6777777777776665554 67776654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=112.69 Aligned_cols=160 Identities=21% Similarity=0.330 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhhhchh-hhhhccCc--cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHH
Q 016656 34 SSCFFFILSAYFVVLPLRD-EGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (385)
Q Consensus 34 ~l~~Flil~~y~ilrpv~d-~l~~s~Ga--e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf 110 (385)
++..|+...+..+..|..+ .+..+.|. +++.++.........+..|+.|+++| |+|||+++.+....+++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSD--RFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCeeeEeehhhhhhhHHHHh
Confidence 4667888888888888888 55555664 34445555556667999999999999 9999999888888776663433
Q ss_pred HHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 016656 111 FLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTW 190 (385)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfW 190 (385)
.+. .+ .| .+. +.+.+ .+...........
T Consensus 80 ~~~--~~-----------------------------------------~~-----~~~-~~~~l---~g~~~~~~~~~~~ 107 (352)
T PF07690_consen 80 AFA--SN-----------------------------------------FW-----LLL-IARFL---LGIGSGFFSPASN 107 (352)
T ss_dssp HHH--CC-----------------------------------------HH-----HHH-HHHHH---HHHHHHHHHHHHH
T ss_pred hhh--hh-----------------------------------------HH-----HHh-hhccc---ccccccccccccc
Confidence 321 11 22 221 11332 3444456677888
Q ss_pred HHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHH
Q 016656 191 ARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQ 247 (385)
Q Consensus 191 a~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~ 247 (385)
++++|.+++||+.+.+++...+.++|.++||.+++.+. ..+.. .+++.+++..++..
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 108 ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 99999999999999999999999999999999999887 44543 66666655555544
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-10 Score=109.48 Aligned_cols=259 Identities=15% Similarity=0.033 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
.+......++...+.....|..|.+..+.|.+. ..++.........+..++.|+++| |+|||+++......+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~~~~~ 84 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD--RYGRRPVLLLGLFIFALSS 84 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH--hcCChHHHHHHHHHHHHHH
Confidence 333333445566788888898888777766543 334444445556888999999999 9999999987776665555
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++... .| .+. +.|.+ ..........
T Consensus 85 ~~~~~~~~-------------------------------------------~~-----~~~-~~~~l---~g~~~~~~~~ 112 (385)
T TIGR00710 85 LGLALSNN-------------------------------------------IE-----TLL-VLRFV---QAFGASAGSV 112 (385)
T ss_pred HHHHHHcc-------------------------------------------HH-----HHH-HHHHH---HHcchhHHHH
Confidence 54443211 12 111 11222 2222333445
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPP 265 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~ 265 (385)
...+++.|.++++|+.|.+|+..++.++|.++|+.+++.+. ..+.. .+.+.+++..+........ . +|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~---- 182 (385)
T TIGR00710 113 ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI---L---PE---- 182 (385)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh---C---CC----
Confidence 67788999999999999999999999999999999999876 44543 4554444433333332221 1 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 016656 266 LRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVV-SSFFYFQKVTVIAM 344 (385)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~-~~l~~f~~~~~v~~ 344 (385)
++ ++ + . ++......+.++.++++|.+....+...+.... .....+. .....+
T Consensus 183 ---~~-~~--~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 235 (385)
T TIGR00710 183 ---TL-PY--E---A-----------------RIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGA-PFVYID 235 (385)
T ss_pred ---CC-CC--c---c-----------------cCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 00 00 0 0 000012345677788888876655544332221 1111111 111222
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 345 TVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 345 ~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.+..+++. .|......++..++.+.+ .+++.+|+|
T Consensus 236 ~~g~~~~~---~g~~~~~~~~~~~~~~~~-~g~l~~~~~ 270 (385)
T TIGR00710 236 IMGVSPSV---FGLLFALNIIAMIFGGFL-NGRFIKKWG 270 (385)
T ss_pred HcCCCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence 23222333 566666677777777666 478888876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-09 Score=108.88 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
.++.+.+..|+...+.++.-|+.+.+..+.|.+.. .++.......+.+..+..|.++| |+|||+++......+++.
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTS--NVERRKLLIGLFVLFIAS 87 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHH
Confidence 44555555566556666677777877777665443 33333334455777888999999 999999999888777666
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.+.+++... .| ++++ .|.. .........
T Consensus 88 ~~~~~~~~~-------------------------------------------~~----~l~~--~r~~---~G~~~~~~~ 115 (390)
T PRK03545 88 HVLSALAWN-------------------------------------------FT----VLLI--SRIG---IAFAHAIFW 115 (390)
T ss_pred HHHHHHhcc-------------------------------------------HH----HHHH--HHHH---HHHHHHHHH
Confidence 665554311 22 1222 1331 222233334
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
....++++|.+++||+.|.+|+.+.+.++|.++||.+++.+. ..|.+ .+.+.+++.
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~ 173 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA 173 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999886 45654 555555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-10 Score=113.94 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=118.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 25 HETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 25 ~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
.+.|.+....+..|+...+++...|.-+....+ .|.+.. -++.........+..|+.|+++| |+|||+++.+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~k~~~~~~~~ 81 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD--KFDKKRYMLLAIT 81 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCcchhHHHHHH
Confidence 445556667777899999999999988877765 566544 34444445566888999999999 9999999887776
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++.++++.+... .| ... +.+......
T Consensus 82 ~~~~~~~~~~~~~~-------------------------------------------~~-----~~~----~~~~~~g~~ 109 (395)
T PRK10054 82 AFASGFIAIPLVNN-------------------------------------------VT-----LVV----LFFALINCA 109 (395)
T ss_pred HHHHHHHHHHHHhH-------------------------------------------HH-----HHH----HHHHHHHHH
Confidence 66665555544211 12 111 111112222
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHHHHHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLFAACLMELAAQ 247 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~~-lll~aa~l~~l~~~ 247 (385)
........++..+|.++++++.|.+|+...+.++|.++||.+++++...+.+ .+...+++..++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 110 YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 2233456789999999999999999999999999999999999988765653 56555555544433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-09 Score=107.40 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=112.1
Q ss_pred cCchhH-HHHHHHHHHHHHHHHHHhhhchhhhhhccCccch------hHH-HHHHHHHHHHHHHHHHHhhCCCCCCchhH
Q 016656 24 PHETSA-LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL------PGL-FVGSLILTLIAAPVSTLIFSLPNLSKAKA 95 (385)
Q Consensus 24 ~~E~~~-~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l------p~l-~~~~~~~~~l~~p~y~~L~~~~r~~r~~v 95 (385)
|.++++ +..+.+..|+..+++++..|.-+.+..+.|.+.- -++ .........+..|+.|+++| |++||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~ 86 (408)
T PRK09874 9 PINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD--RKGRKIM 86 (408)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhCcHHH
Confidence 334444 4444466788889999999999998877654321 123 33445566889999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHH
Q 016656 96 LVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFF 175 (385)
Q Consensus 96 l~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfy 175 (385)
+.......++..+++.+... .| ++++ .|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~----~~~~--~~~~- 116 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQN-------------------------------------------IW----QFLI--LRAL- 116 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------------------------------------------HH----HHHH--HHHH-
Confidence 88766655555444333111 12 1221 1332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 176 LWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 176 iw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
....+ ...+...+.+.|.++++++.+..++...+.++|.++||.+++.+. ..+.. .+.+.+++.+++...
T Consensus 117 --~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 188 (408)
T PRK09874 117 --LGLLG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV 188 (408)
T ss_pred --HHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 22222 234566788999999999999999999999999999999999886 44543 455444444444433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-10 Score=109.50 Aligned_cols=269 Identities=10% Similarity=0.001 Sum_probs=143.6
Q ss_pred HHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 016656 38 FFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQ 115 (385)
Q Consensus 38 Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~ 115 (385)
+++...+....| .+..+.|.+ +..++.........+..|+.|+++| |+|||+++.+....+++..+++++...
T Consensus 7 ~~~~~~~~~~~~---~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 7 YLDRANLSFAAP---MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLD--RFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred HHHHHhhhHhHH---HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHH--hcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 344444444433 333344543 3334444445566889999999999 999999988877666665555544221
Q ss_pred hhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016656 116 SSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVID 195 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~d 195 (385)
.| .+. +.|.+ ..............+++|
T Consensus 82 -------------------------------------------~~-----~~~-~~~~l---~g~~~~~~~~~~~~~~~~ 109 (399)
T TIGR00893 82 -------------------------------------------YV-----SLY-ILRVL---LGAAEAPFFPGIILIVAS 109 (399)
T ss_pred -------------------------------------------HH-----HHH-HHHHH---HHHHHHhhhhHHHHHHHH
Confidence 12 221 11332 233344455678889999
Q ss_pred hCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCC
Q 016656 196 VMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDP 273 (385)
Q Consensus 196 i~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 273 (385)
.++++|+.+.+++...+.++|.++|+.+++.+. ..+.. .+...+++..+.........+..++.+ +..++
T Consensus 110 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 181 (399)
T TIGR00893 110 WFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--------KWLTE 181 (399)
T ss_pred hCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--------ccCCH
Confidence 999999999999999999999999999998765 44543 554444443333333222211111000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 016656 274 RSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRR 353 (385)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~ 353 (385)
+++++..+ +.. ...+ .++.+....+.++.++++|.+..+++..+++.............+..+.+..+++.
T Consensus 182 ~~~~~~~~--~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (399)
T TIGR00893 182 EEKYIVVG--GLL--AEQQ----GKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE- 252 (399)
T ss_pred HHHhhcch--hhc--cccc----cccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH-
Confidence 00000000 000 0000 00001122345667888888887777776665554444333333343333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 354 RLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 354 af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.|......++..++.+.+ .+++.+|+|
T Consensus 253 --~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 279 (399)
T TIGR00893 253 --AGFMASLPGIVGFIGMIL-GGRLSDLLL 279 (399)
T ss_pred --hhHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 344455555555555544 356666654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-09 Score=106.76 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
.+...+..|+..++..+..|..+.+..+.|.+ +..+..........+..++.|+++| |+||||++.+....+++..
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~ 92 (406)
T PRK15402 15 PLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSD--RIGRRPVMLAGVAFFILTC 92 (406)
T ss_pred HHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHHH
Confidence 33344444555667888888888877666653 3345444545556888899999999 9999999888776666655
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+.+.+... .| +++. .|.+ ..+-......
T Consensus 93 ~~~~~~~~-------------------------------------------~~----~l~~--~~~l---~G~~~~~~~~ 120 (406)
T PRK15402 93 LAILLAQS-------------------------------------------IE----QFTL--LRFL---QGIGLCFIGA 120 (406)
T ss_pred HHHHHHcc-------------------------------------------HH----HHHH--HHHH---HHhHhhhHHH
Confidence 55433211 12 0111 1221 1222233345
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAACLMELAA 246 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~l~~l~~ 246 (385)
..++.+.|.++++++.|..++...+..+|.++||.+++.+.. .+.+ .+++.+++..++.
T Consensus 121 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 121 VGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF 181 (406)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999888763 3443 4444444433333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-09 Score=106.22 Aligned_cols=259 Identities=18% Similarity=0.063 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhccCc--cchhHHHHHHHHHHHHHHHHHHHhhCCCCC-----Cchh-HHHHHHHHHHH
Q 016656 34 SSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNL-----SKAK-ALVLIHRFFSV 105 (385)
Q Consensus 34 ~l~~Flil~~y~ilrpv~d~l~~s~Ga--e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~-----~r~~-vl~~~~~~f~~ 105 (385)
+...|.-...+++..+..+.+..+.|. +++-.+.....+ .++.|++|.++| |+ |||| .+..+....++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~D--r~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMD--RYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHH--cccccCCCcchhHHHHHHHHHHH
Confidence 445566677788888888888888665 444444333344 699999999999 99 6765 67666666655
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
...+.++... .. ..| .+. +.++..+.++...
T Consensus 81 ~~~~l~~~~~-~~---------------------------------------~~~-----~l~----~~~~~~~~~~~~~ 111 (402)
T PRK11902 81 SIAAMAFCPP-HA---------------------------------------ALW-----PLA----GLAVLVAFLSASQ 111 (402)
T ss_pred HHHHHHhcCc-cc---------------------------------------hHH-----HHH----HHHHHHHHHHHHH
Confidence 5554433210 00 023 211 2222235556666
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-H-hHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-L-GPY-LLLFAACLMELAAQSSKGIYKEIPRRPEE 262 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~-g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~ 262 (385)
.....+++.|.+++||+.|..++...|.++|.++|+.+++.+.. . |.. .+++.+++..++.... . .. +|
T Consensus 112 ~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~--~~----~e- 183 (402)
T PRK11902 112 DIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-L--WA----PE- 183 (402)
T ss_pred HHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-H--hc----CC-
Confidence 67889999999999999999999999999999999998888764 3 554 5555444443333321 1 11 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016656 263 LPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVI 342 (385)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v 342 (385)
+ ++ ++ ++ +++.+.+..++++.++|+|.++.+++..+++.............+.
T Consensus 184 -~----~~-~~-~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l 236 (402)
T PRK11902 184 -P----EV-PA-RP--------------------PRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFL 236 (402)
T ss_pred -C----cc-cc-cc--------------------cchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0 00 00 00 0000113567788999999988877777666554332221111122
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 343 AMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 343 ~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.+...-+++ ..|.+....++...++...+.+++.+|+|
T Consensus 237 ~~~~G~~~~---~~g~~~~~~~~~~~i~g~~~~g~l~~r~g 274 (402)
T PRK11902 237 IRGAGFSAG---EVGIVNKTLGLAATIVGALAGGTLMVRLG 274 (402)
T ss_pred HHhcCCCHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222 26666666666655555666789999887
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-09 Score=108.52 Aligned_cols=272 Identities=14% Similarity=0.062 Sum_probs=160.9
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh-HHHHHHHHHHHHHHHHHHHhhCCCCC-----CchhH
Q 016656 22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP-GLFVGSLILTLIAAPVSTLIFSLPNL-----SKAKA 95 (385)
Q Consensus 22 i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp-~l~~~~~~~~~l~~p~y~~L~~~~r~-----~r~~v 95 (385)
++..+.+|.+.++...|...+.+++.-+..+....+.|.+.-. ..+ .......++.+++|.++| |+ ||||.
T Consensus 6 l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~~~~~l~gpl~D--r~~~~~~Grrr~ 82 (491)
T PRK11010 6 LRIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAYVFKFLWSPLMD--RYTPPFLGRRRG 82 (491)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHHHHHHHHH--cccccCCCCchH
Confidence 3445667788888888889999999999888887776765432 222 112222368899999999 88 99986
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHH
Q 016656 96 -LVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGF 174 (385)
Q Consensus 96 -l~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lf 174 (385)
+..+....++.....++... .. + .| |++ +.
T Consensus 83 ~ll~~~i~~~~~~~~~a~~~~-~~-------------------------------------~--l~----~l~-----~~ 113 (491)
T PRK11010 83 WLLATQLLLLVAIAAMGFLEP-GT-------------------------------------Q--LR----WLA-----AL 113 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-cc-------------------------------------h--HH----HHH-----HH
Confidence 55555555445444444210 00 0 22 122 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-H-hHH-HHHHHHHHHHHHHHHHHH
Q 016656 175 FLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-L-GPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 175 yiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~-g~~-lll~aa~l~~l~~~~~~~ 251 (385)
++.....+...-....++++|.+++||+.+..++...|..+|.++|+.+++.+.. . |-+ .+++.+++..+.......
T Consensus 114 ~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 114 AVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 3333445555556789999999999999999999999999999999999888875 3 544 565555544444333221
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 016656 252 IYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVS 331 (385)
Q Consensus 252 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~ 331 (385)
+ ++ + + + . .+ +. + +.+ ....+.++.++++|....+.+..+++....
T Consensus 194 ~-~e----~----~---~---~-~~--~~----------~----~~~---~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~ 238 (491)
T PRK11010 194 A-PE----P----T---D---T-IP--VP----------K----TLE---QAVVAPLRDFFGRNNAWLILLLIVLYKLGD 238 (491)
T ss_pred c-CC----C----c---c---c-cc--cc----------c----chh---hhHHHHHHHHHcCcCHHHHHHHHHHHHHHH
Confidence 1 11 0 0 0 0 00 00 0 000 012345666777777665555555555443
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 332 SFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 332 ~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.........+..+...-+++. .|.+....+.+..++..++.|++.+|+|
T Consensus 239 ~~~~~~~~~~l~~~~G~s~~~---~g~~~~~~g~i~~iiG~ll~G~L~dr~g 287 (491)
T PRK11010 239 AFAMSLTTTFLIRGVGFDAGE---VGLVNKTLGLLATIVGALYGGILMQRLS 287 (491)
T ss_pred HHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333322222322222222222 5666655665555666677789999887
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=103.58 Aligned_cols=261 Identities=19% Similarity=0.150 Sum_probs=182.7
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hHHHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHH
Q 016656 23 HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PGLFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIH 100 (385)
Q Consensus 23 ~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~ 100 (385)
++....+++.+.++.|++...-.+.-++.+.+.-+.|.++- -+..+..|... .+.+|+...+.+ |++|||++...+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~--r~~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG--RLERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHH
Confidence 45566789999999999999999999999999999888655 46666666655 899999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHH
Q 016656 101 RFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVAL 180 (385)
Q Consensus 101 ~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~ 180 (385)
..|+++.++.++...+. .+. ++|+. .++
T Consensus 86 ~lFi~~n~l~alAp~f~------------------------------------------------~Ll-~aR~~---~g~ 113 (394)
T COG2814 86 ALFIVSNLLSALAPSFA------------------------------------------------VLL-LARAL---AGL 113 (394)
T ss_pred HHHHHHHHHHHHhccHH------------------------------------------------HHH-HHHHH---HHH
Confidence 99999999888865422 222 45775 233
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCC
Q 016656 181 LNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPR 258 (385)
Q Consensus 181 ~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~ 258 (385)
--.+..++.++.++|+-+++++.|--+++..|.+++.++|.-++++++ .+|-+ .++..+++.+++....+. ..+.
T Consensus 114 a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~---~lP~ 190 (394)
T COG2814 114 AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK---LLPP 190 (394)
T ss_pred HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---hCCC
Confidence 355667788899999999999999999999999999999999999998 56765 666555554444443222 2220
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 259 RPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQK 338 (385)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~ 338 (385)
+ +. + + .++ +.....-.++|+|.+....+..++.. ...+.-|.+
T Consensus 191 ----------~--~~--~--~-----------------~~~---~~~~~~~~~l~~p~v~~~l~~t~l~~-~g~F~~ftY 233 (394)
T COG2814 191 ----------S--EI--S--G-----------------SLP---GPLRTLLRLLRRPGVLLGLLATFLFM-TGHFALYTY 233 (394)
T ss_pred ----------c--cC--C--C-----------------CCC---cchhHHHHHhcCchHHHHHHHHHHHH-cchhhhHHh
Confidence 0 00 0 0 011 22333445677787776655554432 222222332
Q ss_pred -HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016656 339 -VTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLL 381 (385)
Q Consensus 339 -~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rr 381 (385)
..+..+...- ..+..+......|+..++-..+. ||+.+|
T Consensus 234 i~P~L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~g-Grl~dr 273 (394)
T COG2814 234 IRPFLESVAGF---SVSAVSLVLLAFGIAGFIGNLLG-GRLADR 273 (394)
T ss_pred HHHHHHHccCC---CHhHHHHHHHHHHHHHHHHHHHH-hhhccc
Confidence 2233332221 23348888889999888887775 788877
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=102.06 Aligned_cols=159 Identities=12% Similarity=0.025 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh-HHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP-GLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp-~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
....++..+....++.+.-+..+.+..+.|.+.-. ....+. .....+..|+.|+++| |+|||+++.+....+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D--r~g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIAD--RSGRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHH--HhCChHHHHHHHHHHHHHH
Confidence 34556667888888888888888888777665432 333333 3345778899999999 9999999887666655554
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++.+... .| +.++ .|.+ ..........
T Consensus 83 ~~~~~~~~-------------------------------------------~~----~~~~--~~~l---~g~~~~~~~~ 110 (392)
T PRK10473 83 LLCSLAET-------------------------------------------SS----LFLA--GRFL---QGIGAGCCYV 110 (392)
T ss_pred HHHHHhCc-------------------------------------------HH----HHHH--HHHH---HHhhhhHHHH
Confidence 44432110 12 1221 1222 2332344455
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
..+++++|.++++|+.+..++...+.++|.++||.+++.+. ..+.. .+.+.+++.
T Consensus 111 ~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~ 167 (392)
T PRK10473 111 VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG 167 (392)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988775 44543 444444333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-09 Score=103.34 Aligned_cols=168 Identities=17% Similarity=0.067 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh--------HH-HHHHHHHHHHHHHH
Q 016656 178 VALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG--------PY-LLLFAACLMELAAQ 247 (385)
Q Consensus 178 ~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g--------~~-lll~aa~l~~l~~~ 247 (385)
.+...........+++.|.+++||+.+..++.++|.++|.++|+.+++.+. ..+ .. .+++.+++..++..
T Consensus 93 ~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~ 172 (356)
T TIGR00901 93 IAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLL 172 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHH
Confidence 344455555678889999999999999999999999999999999998886 455 33 56666655544433
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchh---HHHHHHHH
Q 016656 248 SSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNY---LLSVSLFL 324 (385)
Q Consensus 248 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~y---L~~i~~~v 324 (385)
..+...++ ++ ++ + + . +++.+.+..++++.++++|. +..+.+..
T Consensus 173 ~~~~~~~e----~~-------~~-~---~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (356)
T TIGR00901 173 VTLFLAKE----PQ-------ED-A---S---V----------------PKPLTQAVLKPIREFFQRKNMIQALLLLLLI 218 (356)
T ss_pred HHHHhccC----CC-------cc-c---c---c----------------chhHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 32221111 00 00 0 0 0 00001134567888888886 55554444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 325 WLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 325 ~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
+++.......+-....+..+ ...+++ -+|.+....+.+..+++.++.+++.+|+|
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~-~g~~~~---~~g~~~~~~~~~~~~~g~~~~g~l~~r~g 273 (356)
T TIGR00901 219 VLYKLGDSAATVLTTLFLLD-MGFSKE---EIALVAKINGLLGAILGGLIGGIIMQPLN 273 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCHH---HHHHHhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444332222222222222 222222 26777777777777777888889999987
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-09 Score=105.04 Aligned_cols=276 Identities=14% Similarity=0.084 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
++......|+...+++...|.-+....+ .|.+.. .++.. .......+..|+.|+++| |+|||+.+......+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D--r~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISD--KLGLKKHLLWIISGLLVL 81 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHH
Confidence 4445566788888999999998888776 565443 24334 445566999999999999 999999998776665444
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
...+......... .. ..+ |... +.+++ .+.......
T Consensus 82 ~~~~~~~~~~~~~------------~~------------------------~~~----~~~~-~~~~~---~g~~~~~~~ 117 (396)
T TIGR00882 82 FAPFFIYVFGPLL------------QS------------------------NIL----VGAI-VGGLY---LGFVFSAGA 117 (396)
T ss_pred HHHHHHHHhhhHH------------HH------------------------HHH----HHHH-HHHHH---HHHHhccch
Confidence 3332221110000 00 001 0000 01111 111111112
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPP 265 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~ 265 (385)
...-+++.|.. ++.++.||....++++|..+||.+++.+...+.+ ++.+.+++..+...+.... + +..++
T Consensus 118 ~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~-~--~~~~~---- 188 (396)
T TIGR00882 118 GAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFA-K--PKAPS---- 188 (396)
T ss_pred hhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHh-C--CCCch----
Confidence 22223344432 2224578999999999999999999988766664 6666665554443332221 1 11000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016656 266 LRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMT 345 (385)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~ 345 (385)
+.++ . ++. + + ++++ +..+.++.++++|.+..++...++.....+..+.....+..+.
T Consensus 189 -~~~~-----~-~~~-----~------~--~~~~---~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~ 245 (396)
T TIGR00882 189 -SATV-----A-NAL-----G------A--NASA---FSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSF 245 (396)
T ss_pred -hhhh-----h-ccc-----c------c--ccCC---CCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0 000 0 0 0001 1123466788888877666665555544444443334444443
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 346 VSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 346 ~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
+.+...-....|...+..++...+.+.+. +++.+|+|.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~i~~~~~~~~~-g~l~~r~g~ 283 (396)
T TIGR00882 246 FATPQQGTRVFGYVTTMGELLNALIMFCA-PLIINRIGA 283 (396)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence 32221122346777777777777777665 799999873
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-08 Score=102.92 Aligned_cols=161 Identities=15% Similarity=0.189 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
..++...|+...+++.+-|+-+....+ .|.+.. -++.. .......++.|+.|+++| |++||+++.+.....++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~d--r~g~k~~l~~~~~~~~~~~ 90 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIAD--RFGAKPMIVTGMLMRAAGF 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHH--HhCchHHHHHHHHHHHHHH
Confidence 445567788889999999998877655 565443 23333 334445777899999999 9999999988887776666
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++.+... .| |+++ .+.+ ..........
T Consensus 91 ~~~~~~~~-------------------------------------------~~----~l~~--~~~l---~g~~~~~~~~ 118 (400)
T PRK11646 91 ATMAIAHE-------------------------------------------PW----LLWL--SCIL---SGLGGTLFDP 118 (400)
T ss_pred HHHHHhcc-------------------------------------------HH----HHHH--HHHH---HHHHHHHHHH
Confidence 65543210 23 1222 1221 1222233334
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLFAACLMELA 245 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~~-lll~aa~l~~l~ 245 (385)
...+.+.|.+++|++.|.+|+...+.++|.++||.+++.+...+.. .+.+.+++..++
T Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~ 177 (400)
T PRK11646 119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLA 177 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999998865653 555555444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=106.09 Aligned_cols=258 Identities=14% Similarity=0.048 Sum_probs=137.0
Q ss_pred chhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhh
Q 016656 50 LRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127 (385)
Q Consensus 50 v~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~ 127 (385)
..+.+..+.|.+. ..++........++..++.|+++| |+|||+++.+.....++..+++++...
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~~~~~~~~------------ 82 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD--RSNPRVFLPIGLILCAIVNLFFGFSTS------------ 82 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHH--hhCCeehhHHHHHHHHHHHHHHHHhhh------------
Confidence 3344444445433 334444445566888999999999 999999998887777666666554321
Q ss_pred hhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHH
Q 016656 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFG 207 (385)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fg 207 (385)
.| .+. +.|.+ .............+++.|.++++|+.+.++
T Consensus 83 -------------------------------~~-----~~~-~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 122 (379)
T TIGR00881 83 -------------------------------LW-----VMA-ALWAL---NGIFQGMGWPPCGRTVTKWFSRSERGTWVS 122 (379)
T ss_pred -------------------------------HH-----HHH-HHHHH---HHhhccccCCchHHHHHHhcCHhhheeeEe
Confidence 22 221 11222 233334445578889999999999999999
Q ss_pred HHHHHHhHHHhhhH-HHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016656 208 FIGAGATLGQLFGS-LFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPA 284 (385)
Q Consensus 208 ligag~~lG~I~G~-~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 284 (385)
+.+.+.++|.++|+ .+++.+. ..+.. .+++.+++..+.........+..++. .+.++ . +++.. ++.+
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~--~~~~~-~~~~--- 192 (379)
T TIGR00881 123 FWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQS-CGLPP---A--EEMPN-EEPD--- 192 (379)
T ss_pred ehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccc-cccCc---c--ccCcc-cccc---
Confidence 99999999999999 4655554 33433 45444433333323222221211110 00000 0 00000 0000
Q ss_pred CCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 016656 285 AKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIA 364 (385)
Q Consensus 285 ~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~g 364 (385)
. .++ ++++.........+.++++|.+..+++..++.....+........+..+.+..+++. .|......+
T Consensus 193 -~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~ 262 (379)
T TIGR00881 193 -G----DAE--KKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK---ASWAFTLYE 262 (379)
T ss_pred -c----ccc--cccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHHHH
Confidence 0 000 000000122345677889999888777766655443333322233333333333333 344455555
Q ss_pred HHHHHHHHHhHHHHHHHh
Q 016656 365 VFILAGQLTLTGTSFLLL 382 (385)
Q Consensus 365 v~~~~~qlf~t~~l~rrl 382 (385)
+..++.+.+ .+++.+|.
T Consensus 263 ~~~~~~~~~-~g~l~~r~ 279 (379)
T TIGR00881 263 LGGLVGTLL-AGWLSDKL 279 (379)
T ss_pred HHcchhHHH-HHHHHHHH
Confidence 555555444 36666653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.6e-09 Score=101.66 Aligned_cols=249 Identities=13% Similarity=0.041 Sum_probs=142.9
Q ss_pred HHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016656 42 SAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSI 119 (385)
Q Consensus 42 ~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~ 119 (385)
++....-|..+.+..+.|.+ +..++.........+..++.|+++| |+|||+++.......++..+++.+...
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~~~~~~~~~~~~~i~~~~~~~~~~---- 78 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMAD--SFGRKPVILGGTLVFALAAVACALAQT---- 78 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHh--hcCChHHHHHHHHHHHHHHHHHHHHcc----
Confidence 34455668888877776554 3344444444455888999999999 999999988877766666555543211
Q ss_pred ccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 016656 120 GYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDS 199 (385)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~ 199 (385)
.| .+. +.................+++.|.++.
T Consensus 79 ---------------------------------------~~-----~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~~ 110 (377)
T PRK11102 79 ---------------------------------------ID-----QLI----YMRFLHGLAAAAASVVINALMRDMFPK 110 (377)
T ss_pred ---------------------------------------HH-----HHH----HHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 12 111 111112333444455778899999999
Q ss_pred chhhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCC
Q 016656 200 ESGSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGA 277 (385)
Q Consensus 200 ~eakR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 277 (385)
+|+.+.+++...+.++|.++||.+++.+.. .+.. .+...+++..+...+.....+. . . ++ ++
T Consensus 111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~--~~-~~- 174 (377)
T PRK11102 111 EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE--T----------L--PK-ER- 174 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc--c----------C--cc-cc-
Confidence 999999999999999999999999988873 4543 4544444433333332221110 0 0 00 00
Q ss_pred CCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCChhHHHHHH
Q 016656 278 DGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQK-VTVIAMTVSSSLGRRRLL 356 (385)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~-~~~v~~~~~~~~~~~af~ 356 (385)
.+ +.+. .+..+.++.++++|.+...++...+..... .....+ .....+.+..+++. .
T Consensus 175 --~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~---~ 232 (377)
T PRK11102 175 --RQ--------------PFHL--RTTIRNFASLFRHKRVLGYMLASGFSFAGM-FSFLTAGPFVYIELNGVSPQN---F 232 (377)
T ss_pred --cC--------------CCCh--HHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHhCCCHHH---H
Confidence 00 0000 123456677888888765554443322211 111111 01111222222222 5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 357 AEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 357 G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
|.+....++..++.+.+. +++.+|+|
T Consensus 233 g~~~~~~~~~~~~~~~~~-g~l~~r~g 258 (377)
T PRK11102 233 GYYFALNIVFLFVMTIIN-SRFVRRVG 258 (377)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhC
Confidence 666677777777776664 78888876
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-09 Score=108.46 Aligned_cols=279 Identities=14% Similarity=0.060 Sum_probs=147.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 25 HETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 25 ~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
.+.+.+..+.+..|+..++++..-|.-+....+ .|.+.. -++.. .......+..|+.|+++| |+||||++.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~D--r~g~r~~~~~~~~ 84 (420)
T PRK09528 7 LKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISD--KLGLKKHLLWIIS 84 (420)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHH
Confidence 344567777788889999999999999888877 665444 24444 445566999999999999 9999999877665
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++....+... .... .+..+.+.. .++ ..++
T Consensus 85 ~~~~~~~~~~~~-~~~~----------------------------------------~~~~~~~~~------~~~-~~~~ 116 (420)
T PRK09528 85 GLLVLFGPFFIY-VFAP----------------------------------------LLQYNILLG------AIV-GGIY 116 (420)
T ss_pred HHHHHHHHHHHH-HHHH----------------------------------------HHHHHHHHH------HHH-HHHH
Confidence 554333222111 1000 000000000 000 0111
Q ss_pred HHHHHHHHHHHHHhhCC--cchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHHHhhhcCC
Q 016656 182 NLITISSTWARVIDVMD--SESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLFAACLMELAAQSSKGIYKEIPR 258 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~--~~eakR~fgligag~~lG~I~G~~l~~~la~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~ 258 (385)
...........+++.++ .++..+.||...+++++|.++||.+++.+...+.. ++++.+++..+++.....+ +. +.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~-~~-~~ 194 (420)
T PRK09528 117 LGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFA-KP-DA 194 (420)
T ss_pred hhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcc-cc-cc
Confidence 01000011111223222 23344578999999999999999999988765554 5665554444443332221 11 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 259 RPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQK 338 (385)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~ 338 (385)
+ +.. +. ++ +. ++ +++ .+.++.++.++|+|.++.+++..++........+...
T Consensus 195 -~------~~~--~~-~~--~~----------~~---~~~---~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~ 246 (420)
T PRK09528 195 -P------STA--KV-AN--AL----------GA---NAS---AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQF 246 (420)
T ss_pred -c------chh--hh-cc--ch----------hc---ccc---cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHH
Confidence 0 000 00 00 00 00 011 1234556667888876665554444433322222222
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 339 VTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 339 ~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
..+..+.+.+...-+...|...+..++...+.+.+ .|++.+|+|-
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~l~dr~g~ 291 (420)
T PRK09528 247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFF-APFIINRIGA 291 (420)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCc
Confidence 22232222221111234677777777777777666 4899999873
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.5e-09 Score=105.10 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=117.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 24 ~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
+++.+.++.+++.+|+....++.+.|..|.+..+.|.+.. -++.......+.+..|+.|+++| |+||||++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~r~~~~~~~~ 83 (471)
T PRK10504 6 DSVRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD--RVGVRNIFFTAIV 83 (471)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhchHHHHHHHHH
Confidence 3455677788888899999999999999998887766544 34443334445788999999999 9999999887777
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++..+++++.. + .| .+. +.|.+ ....
T Consensus 84 ~~~~~~~~~~~~~--~-----------------------------------------~~-----~l~-~~~~l---~g~~ 111 (471)
T PRK10504 84 LFTLGSLFCALSG--T-----------------------------------------LN-----ELL-LARVL---QGVG 111 (471)
T ss_pred HHHHHHHHHHHhC--C-----------------------------------------HH-----HHH-HHHHH---HHhh
Confidence 7666655544321 0 11 111 11332 2332
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAACLMELA 245 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~l~~l~ 245 (385)
.........+.+.|.++.+++.+.+|+.+.++++|..+||.+++.+.. .|.. .+.+.+.+..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 112 GAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG 177 (471)
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 334455778889999999999999999999999999999999998873 4533 555444333333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-08 Score=100.97 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 27 TSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 27 ~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
.+.+....++.++...++++.-|.-|.+..+.|.+.- .++.........+..|+.|+++| |+|||+++.......+
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D--r~grr~~~~~~~~~~~ 84 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD--RVGRRPVILVGMSIFI 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH--hcCChHHHHHHHHHHH
Confidence 3344456666678888889988988888777665443 34443444455888999999999 9999999887666655
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
+..+++.+... .| ++++ .|.+ .+.....
T Consensus 85 ~~~~~~~~~~~-------------------------------------------~~----~l~~--~~~~---~g~~~~~ 112 (394)
T PRK11652 85 LGTLVALFAHS-------------------------------------------LT----VLIA--ASAI---QGLGTGV 112 (394)
T ss_pred HHHHHHHHHcc-------------------------------------------HH----HHHH--HHHH---HHhhhhH
Confidence 54444332100 12 1111 1222 1222223
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAAC 240 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~ 240 (385)
.......+..|.++.++..+..++.+.|..+|.++||.+++.+.. .|.. .+.+.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~ 170 (394)
T PRK11652 113 GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL 170 (394)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 344566788999999999999999999999999999999988863 4543 4444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-08 Score=99.85 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~l 108 (385)
+....+.|+....-+..-|+.+.+..+.|.+.- -+..........+..|..|+++| |+||||++......+++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D--r~grr~~~~~~~~~~~~~~~ 100 (394)
T PRK10213 23 FSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQ--ATDRRYVVILFAVLLTLSCL 100 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHHHHH
Confidence 333334444444544555666666666665433 34344445556788999999999 99999999988888877666
Q ss_pred HHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 016656 109 VFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188 (385)
Q Consensus 109 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~sl 188 (385)
++.+... .| ++++ .|+. .+.........
T Consensus 101 ~~~~~~~-------------------------------------------~~----~l~~--~r~l---~G~~~g~~~~~ 128 (394)
T PRK10213 101 LVSFANS-------------------------------------------FS----LLLI--GRAC---LGLALGGFWAM 128 (394)
T ss_pred HHHHHCh-------------------------------------------HH----HHHH--HHHH---HHHhhHHHHHH
Confidence 5544211 22 1222 1332 34444455667
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
..++++|.++++|+.+..++...+.++|.++||.+++.+. ..|.+ .+++.+++.
T Consensus 129 ~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~ 184 (394)
T PRK10213 129 SASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG 184 (394)
T ss_pred HHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999987 44653 555544433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=114.51 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhhchhhhhhccCccchhHHHHHH-HH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 016656 38 FFILSAYFVVLPLRDEGAISLGLSKLPGLFVGS-LI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQ 115 (385)
Q Consensus 38 Flil~~y~ilrpv~d~l~~s~Gae~lp~l~~~~-~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~ 115 (385)
++....|..+|+...+...+-|+...-.=++++ +. +.++.+|.+|.++| |+|||+++.++...-+++++++++.-.
T Consensus 43 ~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD--~yGRkpvll~c~~~va~s~ll~~~S~~ 120 (451)
T KOG2615|consen 43 SLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSD--RYGRKPVLLACLIGVALSYLLWALSRN 120 (451)
T ss_pred chhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhh--hhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666665555444422222225554 44 56999999999999 999999999999998888888887544
Q ss_pred hhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016656 116 SSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVID 195 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~d 195 (385)
+. .++ ++|.. .+..-.++++.=+++.|
T Consensus 121 F~------------------------------------------------afv-~aR~l----~Gi~kgnl~v~rAiisd 147 (451)
T KOG2615|consen 121 FA------------------------------------------------AFV-LARFL----GGIFKGNLSVIRAIISD 147 (451)
T ss_pred HH------------------------------------------------HHH-HHHHh----hhhccCchHHHHHHHHh
Confidence 31 111 23543 44445588999999999
Q ss_pred hCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh
Q 016656 196 VMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 196 i~~~~eakR~fgligag~~lG~I~G~~l~~~la~ 229 (385)
+.++|++.+-++.++...++|+|+||++|++++.
T Consensus 148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999999999999996
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-08 Score=97.71 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=115.5
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh--HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHH
Q 016656 23 HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP--GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (385)
Q Consensus 23 ~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp--~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~ 100 (385)
+++.++.+...++..+++.+...+.-++.+.+.-+.|.+... ++.........+..|+.|+++| |+|||+++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD--RYGRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHH
Confidence 456667777788888999999999999999887777665443 4444445566889999999999 999999988776
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHH
Q 016656 101 RFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVAL 180 (385)
Q Consensus 101 ~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~ 180 (385)
...++..+++++... .| ++++ .|.+ ..+
T Consensus 85 ~~~~~~~~~~~~~~~-------------------------------------------~~----~l~~--~~~l---~G~ 112 (405)
T TIGR00891 85 VLFSAGTLACGFAPG-------------------------------------------YI----TMFI--ARLV---IGI 112 (405)
T ss_pred HHHHHHHHHHHHhcc-------------------------------------------HH----HHHH--HHHH---HHh
Confidence 666555544443211 12 1121 1222 122
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh--HH-HHHHHHHH
Q 016656 181 LNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG--PY-LLLFAACL 241 (385)
Q Consensus 181 ~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g--~~-lll~aa~l 241 (385)
..........++++|.++++|+.+.+++...+.++|.++|+.+++.+. ..+ .. .+++.++.
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~ 177 (405)
T TIGR00891 113 GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILP 177 (405)
T ss_pred hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 233344567788999999999999999999999999999999988876 334 33 44444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-08 Score=99.92 Aligned_cols=259 Identities=12% Similarity=0.095 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PGLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
..|....+|+..+++++..|..+.+..+.|.+.. .++.++.+. ...+..|+.|.++| |++|+...........+.
T Consensus 6 ~~~~~~~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~d--r~g~~~~~~~~~~~~~~~- 82 (382)
T PRK11128 6 TRWLALSYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVK--DPSQLIPALRLLALLTLL- 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHh--hhcchHHHHHHHHHHHHH-
Confidence 4455666888889999999999988888766544 355554444 45899999999999 999953322111111111
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+........+ ..| .... .|.. ..........
T Consensus 83 --~~~~~~~~~~--------------------------------------~~~-----~l~i-~~~l---~g~~~~~~~~ 113 (382)
T PRK11128 83 --FAVAFWFGAH--------------------------------------SFW-----LLFV-AIGL---FNLFFSPLVP 113 (382)
T ss_pred --HHHHHHHhcc--------------------------------------cHH-----HHHH-HHHH---HHHHHccccc
Confidence 1111111100 033 2210 1111 1222333444
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPP 265 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~ 265 (385)
...+.+.|. .+|+.|-+|....++++|..+||.+++++. .+|.+ .+++.++...+...+ .+.+ +++ +
T Consensus 114 ~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~--~~~~-----~~~-~- 182 (382)
T PRK11128 114 LTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG--QLLR-----PTI-M- 182 (382)
T ss_pred HHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH--HHcc-----CCC-C-
Confidence 566777776 466778899999999999999999999987 45765 555554433333222 1111 100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016656 266 LRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMT 345 (385)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~ 345 (385)
+ +. ++ + +++ .+..++++.++|+|.+..+.+..++........+.....+..+.
T Consensus 183 ---~--~~-~~---~----------------~~~--~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 235 (382)
T PRK11128 183 ---P--QG-ES---R----------------QQE--SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAA 235 (382)
T ss_pred ---C--cc-cc---c----------------ccc--ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHC
Confidence 0 00 00 0 000 01234577899999888776666665443222221111222222
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 346 VSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 346 ~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.-+ ++. .|...+...+ ..+.+.+..+++.+|+|
T Consensus 236 g~s-~~~---~g~~~~~~~~-~~~~~~~~~g~l~~r~~ 268 (382)
T PRK11128 236 GYS-AST---IGYLWSLGVV-AEVLIFAFSNRLFRRWS 268 (382)
T ss_pred CCC-HhH---HHHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 112 222 5555554444 44555556789999987
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-08 Score=99.79 Aligned_cols=155 Identities=12% Similarity=0.035 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhccCccchh-HH-HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHH
Q 016656 34 SSCFFFILSAYFVVLPLRDEGAISLGLSKLP-GL-FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFF 111 (385)
Q Consensus 34 ~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp-~l-~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~ 111 (385)
++..|+..+.-+..-+..+.+..+.|.+... .. .........+..++.|+++| |+|||+++.+....+++..++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSD--RSNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHh--hcCCchhHHHHHHHHHHHHHHHH
Confidence 3334444333334445556666566654432 33 33334455888999999999 99999998887777766666555
Q ss_pred HHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016656 112 LLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWA 191 (385)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa 191 (385)
+... .| .+. +.++..............+
T Consensus 107 ~~~~-------------------------------------------~~-----~l~----~~~~l~g~~~g~~~~~~~~ 134 (434)
T PRK11663 107 FSSS-------------------------------------------LW-----AFA----LLWVLNAFFQGWGWPVCAK 134 (434)
T ss_pred HHhH-------------------------------------------HH-----HHH----HHHHHHHHHHHccchHHHH
Confidence 4321 12 111 1111112222223345668
Q ss_pred HHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 192 RVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 192 ~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
+++|.++++|+.+..|+...+.++|.++|+.+++.+. ..|.+ .+++.+++.
T Consensus 135 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 135 LLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIA 187 (434)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8999999999999999999999999999999988876 44543 555555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-08 Score=95.71 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchhh-hhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDE-GAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~-l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
+...+.+++....++..-|+.+. +..+.|.+.. .++.........+..++.|+++| |+|||+.+.+.....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD--KFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHHH
Confidence 34555566667777778888885 5445665443 34454556666899999999999 9999999988887777766
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++... + .| ++++ .|++ ....+ ....
T Consensus 82 ~~~~~~~~-~-----------------------------------------~~----~~~~--~~~~---~g~~~-~~~~ 109 (366)
T TIGR00886 82 LWAGLAVQ-S-----------------------------------------YS----VLLL--LRLF---IGIAG-GSFA 109 (366)
T ss_pred HHHHHHhh-h-----------------------------------------HH----HHHH--HHHH---HHHhc-hhhH
Confidence 66555320 0 12 1111 1332 12222 2234
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
....+++|.++++|+.+..++...++++|..+|+.+++.+.
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55788999999999999999999888888888777766654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-08 Score=97.92 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hHHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
..++.+.+|+...++++.-|..+.+..+.|.+.- -++..+. .....+..|++|.++| |++|+.......... .
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d--~~~~~~~~~~~~~~~---~ 80 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIK--DANHIIIALRLLALA---S 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH---H
Confidence 3456777889999999999999999888777554 3444444 4455899999999999 999855432222111 1
Q ss_pred HHHHHHHh-hhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQ-SSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 108 llf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.++.+... ..+ + .| ++++ .+.+ .........
T Consensus 81 ~l~~~~~~~~~~-----~----------------------------------~~----~l~~--~~~l---~~~~~~~~~ 112 (382)
T TIGR00902 81 AIFAAAFSAGAH-----N----------------------------------AW----LLFI--AIGL---FALFFSAGM 112 (382)
T ss_pred HHHHHHHHHhhh-----h----------------------------------HH----HHHH--HHHH---HHHHHccch
Confidence 22222111 110 0 23 1222 1222 233323344
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELP 264 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~ 264 (385)
...-+++.|. .+|+.+.||.+..++++|.++||.+++.+. ..|.+ .+.+.+++..+... ..+.+ +. .+
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~--~~~~~--~~----~~ 182 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI--GFLIK--PT----IP 182 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH--HHHcC--CC----CC
Confidence 5566666553 467788899999999999999999999887 45654 43333322222111 11111 10 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016656 265 PLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAM 344 (385)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~ 344 (385)
| + + ++ + ++++ +..+.++.++|+|.+..+.+..++........+-....+.++
T Consensus 183 ~---~--~--~~--~----------------~~~~---~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~ 234 (382)
T TIGR00902 183 P---K--D--AI--P----------------EDES---QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA 234 (382)
T ss_pred C---C--c--cc--c----------------cccc---ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 00 0 0000 112346678899988877777666554433332222223333
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 345 TVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 345 ~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
...+++. .|.... .+.+.-+++.+..+++.+|+|.
T Consensus 235 -~g~s~~~---~g~l~~-~~~~~~i~~~~~~~~l~~r~g~ 269 (382)
T TIGR00902 235 -AGISASA---TGLLWG-IGVLAEIIIFAFSNKLFQNCSA 269 (382)
T ss_pred -CCCCHhH---HHHHHH-HHHHHHHHHHHHhHHHHhhCCH
Confidence 3333333 455555 4677777778888999999873
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-08 Score=97.35 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
+.+....+..|+...+++...+..+.+..+.|.+ +...+.........+..|+.|+++| |+||||++......+++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d--r~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAE--IIGPLKTMMIGLLLWCV 90 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHH
Confidence 4566677777888888777777776666555443 3334444444455888999999999 99999999887777766
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+++... ..... + .| .+. +.|.+ ..+-....
T Consensus 91 ~~~~~~~~-~~~~~----~----------------------------------~~-----~l~-~~~~i---~G~g~~~~ 122 (402)
T TIGR00897 91 GHAAFIVF-GLGHA----N----------------------------------YP-----LIL-LFYGI---RGLGYPLF 122 (402)
T ss_pred HHHHHHHH-hccCc----c----------------------------------HH-----HHH-HHHHH---HHcchHHH
Confidence 55444221 11000 0 11 111 11221 11111222
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHH-hhhHHHHHHHH-hHh
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQ-LFGSLFAAGMA-FLG 231 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~-I~G~~l~~~la-~~g 231 (385)
....-..+.|.+++||+.|..|+..++.++|. ++||.+++.+. .+|
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 23445667889999999999999999999996 68999888765 445
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-08 Score=100.91 Aligned_cols=262 Identities=12% Similarity=0.031 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHH
Q 016656 32 HSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLV 109 (385)
Q Consensus 32 ~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ll 109 (385)
..++..|+..++..+..+.-+.+..+.+.+.. ..+........++..|+.|+++| |++|||++.+....+++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~d--r~g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLAD--RYDRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhh--hcCCceEEEehHHHHHHHHHH
Confidence 44455666777777777777777666443333 33344445555888999999999 999999988766655555544
Q ss_pred HHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 016656 110 FFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISST 189 (385)
Q Consensus 110 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slf 189 (385)
.+........ ..| ++++ .+++ ............
T Consensus 99 ~~~~~~~~~~--------------------------------------~~~----~l~~--~~~~---~g~~~~~~~~~~ 131 (417)
T PRK10489 99 LALNAFLPEP--------------------------------------SLL----AIYL--LGLW---DGFFGSLGVTAL 131 (417)
T ss_pred HHHHHHcCCC--------------------------------------cHH----HHHH--HHHH---HHHHHHHHHHHH
Confidence 4332110000 012 1211 1222 222233333455
Q ss_pred HHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 016656 190 WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP-YLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLR 267 (385)
Q Consensus 190 Wa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~-~lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~ 267 (385)
-+.+.|.++.+++.|..++..++.++|.++||.+++.+. ..+. +.+.+.+++..++..+... . +.. +
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~----~--- 200 (417)
T PRK10489 132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR---L-PAL----P--- 200 (417)
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---C-CCC----C---
Confidence 667899999999999999999999999999999999876 4454 3444444444343333221 1 100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016656 268 KADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVS 347 (385)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~ 347 (385)
+ +. ++ ++++ ..+..++++.++++|++..+.+..++...... .+...-.+.++.+.
T Consensus 201 -~--~~-~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g 255 (417)
T PRK10489 201 -P--PP-QP-------------------REHP-LRSLLAGFRFLLASPVVGGIALLGGLLTMASA-VRVLYPALADEVWQ 255 (417)
T ss_pred -C--CC-cc-------------------cccc-hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh-HHHhhHHHHHhccC
Confidence 0 00 00 0001 12456778889999997766554443332211 12112223333232
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 016656 348 SSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 382 (385)
Q Consensus 348 ~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrl 382 (385)
.+++. .|.+.+..++..++.+.+ .+++.+|.
T Consensus 256 ~~~~~---~g~~~~~~~~g~~ig~~~-~~~l~~~~ 286 (417)
T PRK10489 256 MGAAQ---IGLLYAAVPLGAALGALT-SGWLAHSA 286 (417)
T ss_pred CChhH---hHHHHHHHHHHHHHHHHH-HHHhhhcc
Confidence 22222 566666666666666655 46776654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-08 Score=97.51 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=112.3
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHH
Q 016656 23 HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (385)
Q Consensus 23 ~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~ 100 (385)
.++..+.++...+..+++...+...-++.+.+..+.|.++. ..+.........+..|+.|+++| |+|||+++.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~d--r~g~r~~l~~~~ 90 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLAD--KFGRKPLMMWSI 90 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHH
Confidence 33444556666777777778888888888777666665433 33333444556888999999999 999999999888
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHH
Q 016656 101 RFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVAL 180 (385)
Q Consensus 101 ~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~ 180 (385)
..+++..+++++.-. .| ++++ .|.+ ...
T Consensus 91 ~~~~~~~~~~~~~~~-------------------------------------------~~----~l~~--~r~l---~G~ 118 (426)
T PRK12307 91 VAYSVGTGLSGLASG-------------------------------------------VI----MLTL--SRFI---VGM 118 (426)
T ss_pred HHHHHHHHHHHHHhH-------------------------------------------HH----HHHH--HHHH---HHH
Confidence 887776666555322 12 1222 1332 222
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHH
Q 016656 181 LNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAA 239 (385)
Q Consensus 181 ~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa 239 (385)
..........+++.|.++++++.|..++..++.++|.++|+.+.+.+. ..+.. .+++++
T Consensus 119 g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 119 GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 233445577888999999999999999999999999999998887765 34443 444443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-08 Score=101.76 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcc
Q 016656 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPK 146 (385)
Q Consensus 67 ~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (385)
..+...-.++++|+-|.+.| |++|||++..+-...++..++.+++...+..
T Consensus 51 ~~a~~LP~~Llsl~aG~laD--r~drrrili~~~~~~~~~~~~L~~l~~~~~~--------------------------- 101 (524)
T PF05977_consen 51 QAASTLPILLLSLFAGALAD--RFDRRRILILSQLLRALVALLLAVLAFFGLL--------------------------- 101 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHHHHHHHHHhCcC---------------------------
Confidence 34555556899999999999 9999999998887776655555554432210
Q ss_pred hhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHH
Q 016656 147 AAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAG 226 (385)
Q Consensus 147 ~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~ 226 (385)
..| ... ++-...+..+.+......+.+.|+.+.||-++.-++.+...++.-++||.++|.
T Consensus 102 -----------~~~-----~Ll----~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 102 -----------SPW-----LLL----ILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred -----------CHH-----HHH----HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 033 221 111233555677777889999999999999999999999999999999999998
Q ss_pred HH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccch
Q 016656 227 MA-FLGPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAI 304 (385)
Q Consensus 227 la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 304 (385)
+- ..|+. .+++-++..+++..+.. ++.... + + ++ ..+++...+.
T Consensus 162 Lva~~G~~~~f~inalsfl~~i~~l~---~~~~~~---------~--~--~~------------------~~~e~~~~~l 207 (524)
T PF05977_consen 162 LVAFFGAAAAFLINALSFLISILALL---RWKPPP---------P--P--SS------------------LPRERFFSAL 207 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---Hccccc---------c--c--cc------------------cchhhhhhhH
Confidence 75 66764 55555544433333222 221100 0 0 00 0012233578
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 305 LDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 305 ~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.+|+|++.++|.+..+....+++++...-+.-..--++++.....+ ..+|.+.++.|+..++--++. +++-++++
T Consensus 208 ~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a---~~yGll~a~~gvGai~Gal~~-~~l~~~~~ 282 (524)
T PF05977_consen 208 REGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGA---SGYGLLLAAFGVGAILGALLL-PRLRRRLS 282 (524)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHHH-HHhhcccC
Confidence 9999999999999888776666665433333222333444444333 348999999999998887764 67776654
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-08 Score=114.28 Aligned_cols=267 Identities=11% Similarity=0.003 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhh-cc-Ccc-----chhHHHHHHH-HHHHHHHHHHHHhhCCCCCCchhHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAI-SL-GLS-----KLPGLFVGSL-ILTLIAAPVSTLIFSLPNLSKAKALVLIH 100 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~-s~-Gae-----~lp~l~~~~~-~~~~l~~p~y~~L~~~~r~~r~~vl~~~~ 100 (385)
.+.++++..|+..++-++.+-....+.+ .. +.. ..-.+..+.+ ...+++.|+.|+++| |++||+++....
T Consensus 12 ~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laD--r~~rk~~~~~~~ 89 (1140)
T PRK06814 12 RFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLAD--KYDKAKLAKILK 89 (1140)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhh--hccHHHHHHHHH
Confidence 4555666777777776665544333332 11 221 1222333333 445899999999999 999999864433
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHH
Q 016656 101 RFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVAL 180 (385)
Q Consensus 101 ~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~ 180 (385)
..-++..++..+...... .| ++++ .|.+ .++
T Consensus 90 ~~~~~~~~~~~~~~~~~s----------------------------------------~~----~l~~--~~~l---~gi 120 (1140)
T PRK06814 90 FAEIGIAALAIYGFHLNS----------------------------------------VP----LLFA--ALFL---MGI 120 (1140)
T ss_pred HHHHHHHHHHHHHHHHhh----------------------------------------HH----HHHH--HHHH---HHH
Confidence 221111111111111000 23 1232 1222 244
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH-hHH-HHHHHHHHHHHHHHHHHHHhhhcCC
Q 016656 181 LNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL-GPY-LLLFAACLMELAAQSSKGIYKEIPR 258 (385)
Q Consensus 181 ~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~-g~~-lll~aa~l~~l~~~~~~~l~~~~~~ 258 (385)
.+.+.....-+.+.|+++.+|..+..|+.+++.++|.++||.+++++... +.. .+...+++.+++.++.+.+ ..
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 196 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI----PK 196 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC----CC
Confidence 45556678889999999999999999999999999999999999998743 443 3323222222222222111 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 259 RPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQK 338 (385)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~ 338 (385)
.+ .+ ++ . . + .+.+. ..+..++++.+.++|.++.+.+..++..+.........
T Consensus 197 ~~-------~~--~~--~---~-----------~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1140)
T PRK06814 197 TG-------NA--AP--D---L-----------K--IDRNI-IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL 248 (1140)
T ss_pred CC-------CC--CC--C---C-----------e--eccch-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00 00 0 0 0 00011 12456789999999999888777666554433222222
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 016656 339 VTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 382 (385)
Q Consensus 339 ~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrl 382 (385)
-.+..+.+..++ ...|.+.+..++..++.+++. |++.++.
T Consensus 249 p~~~~~~~g~~~---~~~g~~~~~~~~g~~ig~~~~-g~l~~~~ 288 (1140)
T PRK06814 249 PLLAKETLGGDE---NVATLFLAVFSVGVAVGSFLA-SKLSEGR 288 (1140)
T ss_pred HHHHHHHcCCch---HHHHHHHHHHHHHHHHHHHHH-HHHhCCc
Confidence 333444433322 236777778777777777765 6777543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-08 Score=98.34 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 016656 37 FFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLW 114 (385)
Q Consensus 37 ~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~ 114 (385)
.|+..++..+..|..+.+.-+.|.+.- .+....-+....+..++.|.++| |+|||+++......+++..+++.+..
T Consensus 25 ~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d--r~Grr~~l~~~~~~~~~~~~~~~~a~ 102 (413)
T PRK15403 25 DFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSD--RIGRRPVLITGALIFTLACAATLFTT 102 (413)
T ss_pred HHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHH--HcCchHHHHHHHHHHHHHHHHHHHcC
Confidence 344555667777777776656665433 33332323444778899999999 99999999887777666555544321
Q ss_pred hhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016656 115 QSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVI 194 (385)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~ 194 (385)
. .| ++++ .|++ ..+.........+..+.
T Consensus 103 ~-------------------------------------------~~----~l~~--~r~l---~Gi~~~~~~~~~~~~~~ 130 (413)
T PRK15403 103 S-------------------------------------------MT----QFLI--ARFI---QGTSICFIATVGYVTVQ 130 (413)
T ss_pred C-------------------------------------------HH----HHHH--HHHH---HHHHHHHHHHHHHHHHH
Confidence 1 12 1222 2443 12222223345568899
Q ss_pred hhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHH
Q 016656 195 DVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAA 246 (385)
Q Consensus 195 di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~ 246 (385)
|.++.+|+.|..++++.+.++|.++||.+++.+. ..|.+ .+.+.+++..++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~ 184 (413)
T PRK15403 131 EAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAF 184 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887 34553 5555554444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-08 Score=96.91 Aligned_cols=161 Identities=16% Similarity=0.055 Sum_probs=106.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 24 ~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
+..++.++..++..++....+...-+..+.+..+.|.+. ..++.......+++..++.|+++| |+|||+++.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD--RIGRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH--HhhhHHHHHHHHH
Confidence 334444555555666666667777777777666655543 334444445556888999999999 9999999887776
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
..++..+++++... .| .+. +.+.+ ....
T Consensus 91 ~~~~~~~~~~~~~~-------------------------------------------~~-----~~~-~~~~~---~g~~ 118 (398)
T TIGR00895 91 LFSVFTLLCALATN-------------------------------------------VT-----QLL-ILRFL---AGLG 118 (398)
T ss_pred HHHHHHHHHHHccc-------------------------------------------hH-----HHH-HHHHH---Hhcc
Confidence 66555554443210 12 111 11221 2222
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFA 238 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~a 238 (385)
........+++++|.++.+++.+.+++...+.++|.++|+.+++.+. ..+.. .+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 119 LGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred cccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 34455678899999999999999999999999999999999988876 34443 44444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=94.46 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
+....+..|+...+....-|.-+.+..+.|.+. ..++.........+..|+.|+++| |+|||+++......+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSS--RYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHH
Confidence 444556678888888899999998887776543 344444555666899999999999 9999999998888777666
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++... .| ++++ .|.+ ..........
T Consensus 83 ~l~~~~~~-------------------------------------------~~----~l~~--~r~l---~G~~~~~~~~ 110 (382)
T PRK10091 83 AMFTLSSS-------------------------------------------YL----MLAI--GRLV---SGFPHGAFFG 110 (382)
T ss_pred HHHHHhCc-------------------------------------------HH----HHHH--HHHH---HHhhhHHHHH
Confidence 65554211 22 1222 1332 1221222233
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
..-.++.|.++++++.|..++..++.++|..+|+.+++++. ..+.+ .+.+.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~ 167 (382)
T PRK10091 111 VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFN 167 (382)
T ss_pred HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHH
Confidence 44567899999989999999999999999999999988876 34543 555555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-08 Score=108.93 Aligned_cols=227 Identities=14% Similarity=0.029 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccC
Q 016656 73 LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQG 152 (385)
Q Consensus 73 ~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (385)
..+++.|+.|+++| |+|||+++.+.....++..++..+......
T Consensus 59 ~~~l~~~~~G~l~D--r~grk~~l~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 102 (1146)
T PRK08633 59 PFLLLSSPAGFLAD--KFSKNRVIRIVKLFEVGLTLLIVLAYYLGW---------------------------------- 102 (1146)
T ss_pred HHHHHhhhHhhhcc--cccHHHHHHHHHHHHHHHHHHHHHHHHHcc----------------------------------
Confidence 44888999999999 999999988776554444433333222110
Q ss_pred CCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH--
Q 016656 153 STANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL-- 230 (385)
Q Consensus 153 ~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~-- 230 (385)
.| ++++ .|++ .++...+......++++|+++.+++.+.+|+.+++.++|.++|+.+++++...
T Consensus 103 ------~~----~l~~--~r~l---~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~ 167 (1146)
T PRK08633 103 ------FW----LAFA--VTFL---LGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVN 167 (1146)
T ss_pred ------HH----HHHH--HHHH---HHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12 1221 1222 23344455557788999999999999999999999999999999999998743
Q ss_pred -------hH--HHHHHHH-HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCc
Q 016656 231 -------GP--YLLLFAA-CLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPH 300 (385)
Q Consensus 231 -------g~--~lll~aa-~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 300 (385)
+. +.+.+.+ ++..+.+.... .. ...+. . +. . .. +. +++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~-------~--~~--~--~~------------~~-~~~~~ 217 (1146)
T PRK08633 168 GNTPSEILGRIAPAGLVLLAVAVLGLIFAY---RL-PKVPA-------A--AP--E--VF------------DK-KKYLF 217 (1146)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHh---cC-cCCCC-------C--Cc--c--cc------------cc-ccccc
Confidence 21 2222222 22222222111 11 11000 0 00 0 00 00 00111
Q ss_pred ccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 016656 301 LWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFL 380 (385)
Q Consensus 301 ~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~r 380 (385)
.....++++.++++|.+....+...++.............+..+.+..++. ...|.+.+..++..++.+.+ .+++.+
T Consensus 218 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~~g~~~~~~~ig~~~g~~~-~g~l~~ 294 (1146)
T PRK08633 218 PKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNT--FQVQYLLAASAIGIGIGSLL-AGRLSG 294 (1146)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHH-HHHHhC
Confidence 124567788999999987766555554443333222222333333322222 13566677777777666655 578888
Q ss_pred HhC
Q 016656 381 LLG 383 (385)
Q Consensus 381 rlG 383 (385)
|++
T Consensus 295 r~~ 297 (1146)
T PRK08633 295 RHI 297 (1146)
T ss_pred Cce
Confidence 865
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-08 Score=98.17 Aligned_cols=165 Identities=10% Similarity=0.066 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
++...+..|+...+..+..+..+.+..+.|.+ +..++.........+..|+.|+++| |+|||+++.+....+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK--RFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH--HhCcHHHHHHHHHHHHHHH
Confidence 44556667888888889999888888776653 4445555555566888999999999 9999999988777766655
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++... .| .+. +.|.+ ..........
T Consensus 82 ~~~~~~~~-------------------------------------------~~-----~l~-~~~~~---~G~~~~~~~~ 109 (485)
T TIGR00711 82 LLCGVAPN-------------------------------------------LE-----LMI-IFRVI---QGFGGGPLIP 109 (485)
T ss_pred HHHhCcCC-------------------------------------------HH-----HHH-HHHHH---HHhhhhhHHH
Confidence 55443211 11 111 12332 2333444556
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
..++++.|.++++++.+.+++.+.+.++|.++||.+++++. ..+.. .+++.+++..+...+
T Consensus 110 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 110 LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence 88899999999999999999999999999999999999887 34532 454444443333333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-07 Score=97.13 Aligned_cols=164 Identities=12% Similarity=0.080 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhccCc--cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Ga--e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
.++.+.+..|+......++-...+++..+.|. ++..|+..+-.....+..|.+|+++| |+|||+++.+....+++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D--~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD--RIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHH
Confidence 45566667788888888888888888877665 45567665544455788899999999 999999999988888777
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.+++++.-. .| .++ ++|.+ ..+-.....
T Consensus 85 ~~~~~~a~~-------------------------------------------~~-----~li-~~r~l---~G~g~~~~~ 112 (495)
T PRK14995 85 SLAAAFSPT-------------------------------------------AS-----WLI-ATRAL---LAIGAAMIV 112 (495)
T ss_pred HHHHHHcCC-------------------------------------------HH-----HHH-HHHHH---HHHHHHHHH
Confidence 776665311 12 222 22443 122223333
Q ss_pred HHHHHHHHhhC-CcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhH-HHHHHHHHHHHHHH
Q 016656 187 SSTWARVIDVM-DSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP-YLLLFAACLMELAA 246 (385)
Q Consensus 187 slfWa~~~di~-~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~-~lll~aa~l~~l~~ 246 (385)
...-..+.+.+ +++|+.|.+|+.+++.++|.++||.+++++. ..|. +.+++...+..+++
T Consensus 113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~ 175 (495)
T PRK14995 113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVM 175 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Confidence 34444555554 7789999999999999999999999999987 4454 35555443333333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-07 Score=93.03 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHH-HHHHHHHHHHHH
Q 016656 35 SCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL-IHRFFSVSLLVF 110 (385)
Q Consensus 35 l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~-~~~~f~~~~llf 110 (385)
+..|+..+++++..|.-+....+ .|.+.. .++.........+..|+.|+++| |+||||.+.+ .....++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D--r~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSD--YQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHHHHH
Confidence 44678888899999988876554 665433 34333334456888999999999 9999887654 333332333333
Q ss_pred HHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 016656 111 FLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTW 190 (385)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfW 190 (385)
++... .| ++++ .+.+ .............
T Consensus 82 ~~~~~-------------------------------------------~~----~l~~--~~~~---~g~~~~~~~p~~~ 109 (375)
T TIGR00899 82 AWNRN-------------------------------------------YF----LLLV--LGVL---LSSFASTANPQLF 109 (375)
T ss_pred Hhcch-------------------------------------------HH----HHHH--HHHH---HHhhhhhhHHHHH
Confidence 32100 12 1221 1222 1222233445667
Q ss_pred HHHHhhCCcchhhH--HHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 191 ARVIDVMDSESGSR--LFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 191 a~~~di~~~~eakR--~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
+++.|..+.+++.+ .++....+.++|.++||.+++.+. ..+.+ .+++.+++..+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~ 171 (375)
T TIGR00899 110 ALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVL 171 (375)
T ss_pred HHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 77888876665554 379999999999999999999887 45654 566655544444433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-07 Score=93.88 Aligned_cols=163 Identities=10% Similarity=-0.002 Sum_probs=104.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 26 E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
++..++..++..++.....+..-+..+.+..+.|.+ +..++.........+..++.|+++| |+|||+++......+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~ 90 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD--RIGRKRILIVSVALF 90 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHH
Confidence 344455455555555555555555556665555543 3345454555566888999999999 999999988776665
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++..+++.+... .| ++.+ .|.+ ...-..
T Consensus 91 ~~~~~~~~~~~~-------------------------------------------~~----~~~~--~~~l---~G~~~~ 118 (406)
T PRK11551 91 GLFSLATAQAWD-------------------------------------------FP----SLLV--ARLL---TGVGLG 118 (406)
T ss_pred HHHHHHHHHhcc-------------------------------------------HH----HHHH--HHHH---HHhhHH
Confidence 554444333211 12 1221 1222 233234
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
.......++++|.++++++.+.+++...+.++|..+|+.+++.+. ..+.+ .+++.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (406)
T PRK11551 119 GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGP 179 (406)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence 455677889999999999999999999999999999998877665 33443 555544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-07 Score=90.30 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=89.4
Q ss_pred HHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 016656 44 YFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGY 121 (385)
Q Consensus 44 y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~ 121 (385)
.+..-++.+.+..+.|.+ +..++.........+..|+.|+++| |+|||+++......+++..+++++...
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d--~~G~r~~~~~~~~~~~~~~~~~~~~~~------ 90 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLAD--KFGPRAVAMLGGILYGLGFTFYAIADS------ 90 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH--HcCccchhHHhHHHHHHHHHHHHHHHH------
Confidence 444556666666565543 3345555556666899999999999 999999998877766666655554322
Q ss_pred ccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcch
Q 016656 122 LSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSES 201 (385)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~e 201 (385)
.| ++++ .|.+ ...-...........+.+.++ ||
T Consensus 91 -------------------------------------~~----~~~~--~~~~---~g~~~~~~~~~~~~~~~~~~~-~~ 123 (377)
T TIGR00890 91 -------------------------------------LA----ALYL--TYGL---ASAGVGIAYGIALNTAVKWFP-DK 123 (377)
T ss_pred -------------------------------------HH----HHHH--HHHH---HhHHHHHHHHhHHHHHHHHcC-cc
Confidence 12 0111 1221 111122222334445666665 67
Q ss_pred hhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHH
Q 016656 202 GSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQ 247 (385)
Q Consensus 202 akR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~ 247 (385)
+.+..++...+.++|.++++.+.+.+. ..+.+ .+++.+++..+...
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 124 RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV 171 (377)
T ss_pred cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 888999999999999887555544443 44443 55555544433333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-07 Score=95.33 Aligned_cols=157 Identities=15% Similarity=0.052 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhh----hchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 34 SSCFFFILSAYFVVL----PLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 34 ~l~~Flil~~y~ilr----pv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
+...++....+++.| +..+.+... |.+. .-.+....+....+..|+.|+++| |+|||+++.+....+++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~D--r~g~k~~l~~~~~~~~i~~ 107 (452)
T PRK11273 31 FLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVM 107 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccCCchhHHHHHHHHHHHH
Confidence 344444555555443 233444433 4332 233344445556888999999999 9999999988887777666
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++...... + .| ... +.+. ...+.......
T Consensus 108 ~~~~~~~~~~~-------------------------------------~--~~-----~~~-~~~~---l~gi~~g~~~~ 139 (452)
T PRK11273 108 LFMGFVPWATS-------------------------------------S--IA-----VMF-VLLF---LCGWFQGMGWP 139 (452)
T ss_pred HHHHhhhcccc-------------------------------------c--HH-----HHH-HHHH---HHHHHHhccch
Confidence 66665421100 0 11 111 0111 12322222333
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHH-hhhHHHHHHHHhH-hHH-HHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQ-LFGSLFAAGMAFL-GPY-LLLFAACL 241 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~-I~G~~l~~~la~~-g~~-lll~aa~l 241 (385)
.....+.|.++++++.+..|+..++.++|+ +.|+.++..+... +.. .+++.+++
T Consensus 140 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 140 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445678899999999999999999999987 4566554333322 332 44444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-07 Score=89.81 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHH
Q 016656 32 HSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLV 109 (385)
Q Consensus 32 ~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ll 109 (385)
......++...+++...+..+.+..+.|.+. ..++.........+..|+.|+++| |+|||+.+.+......+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d--~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD--RFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhCCchhhHHHHHHHHHHHHH
Confidence 3455667888888888898888887765543 344455556667899999999999 999999887777666655555
Q ss_pred HHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 016656 110 FFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISST 189 (385)
Q Consensus 110 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slf 189 (385)
+.+... .| .+. +.+.+ .+..........
T Consensus 81 ~~~~~~-------------------------------------------~~-----~~~-~~~~l---~g~~~~~~~~~~ 108 (352)
T cd06174 81 LAFASS-------------------------------------------LW-----LLL-VGRFL---LGLGGGALYPAA 108 (352)
T ss_pred HHHhcc-------------------------------------------HH-----HHH-HHHHH---HHcccccccHhH
Confidence 544311 12 111 11222 222233344567
Q ss_pred HHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH-hHH-HHHHHHHHHHHHHH
Q 016656 190 WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL-GPY-LLLFAACLMELAAQ 247 (385)
Q Consensus 190 Wa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~-g~~-lll~aa~l~~l~~~ 247 (385)
-+++.|.+++||+.+.+++...+.++|.++||.+++.+... +.. .+.+.+++..++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (352)
T cd06174 109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168 (352)
T ss_pred HHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988743 333 55555544444433
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-07 Score=92.61 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
.+...++..|+..++..++.|..+.+..+.|.+.- -++..+......+..|+.|+++| |+|||+++......+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~d--r~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIK--RIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 35556666788899999999999999888765432 34444445566889999999999 999999998877777666
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.+.+++... .| .+. +.|++ .........
T Consensus 85 ~~~~~~~~~-------------------------------------------~~-----~l~-~~~~l---~G~~~~~~~ 112 (381)
T PRK03633 85 CAGLGLMVG-------------------------------------------FW-----SWL-AWRFV---AGIGCAMIW 112 (381)
T ss_pred HHHHHHhcc-------------------------------------------HH-----HHH-HHHHH---HHHHHHHHH
Confidence 555544211 12 111 11222 122222222
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~ 229 (385)
...-+.++|..+++++.|.++....+.++|..+||.+++.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3334556788889999999999999999999999999988763
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-07 Score=94.44 Aligned_cols=188 Identities=11% Similarity=0.151 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCC----CCchhHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPN----LSKAKALVLIHR 101 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r----~~r~~vl~~~~~ 101 (385)
.+++......+-+-++|.+..+....+..+.|.+.. ..++.......++..|+.|+++| | +||||.+.+...
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSD--r~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSD--RCTSRFGRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhc--CCCCCCCChHHHHHHHH
Confidence 466777778888999999999988888777777654 34455556677999999999999 6 999999876533
Q ss_pred HH-HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHH
Q 016656 102 FF-SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVAL 180 (385)
Q Consensus 102 ~f-~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~ 180 (385)
.. ++.++++++.-.... .+..+..... . .|. -|.++ ..+++ .+.
T Consensus 82 ~~~~~~l~ll~~~~~~~~-----------------~~~~~~~~~~-----------~-~~~--i~~~~---i~~~l-ld~ 126 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGH-----------------LFGDNLDKKT-----------K-PRA--IIVFV---VGFWI-LDV 126 (477)
T ss_pred HHHHHHHHHHHhCchhhh-----------------hccccccccc-----------h-hHH--HHHHH---HHHHH-HHH
Confidence 32 233333332111100 0000000000 0 110 01222 11222 233
Q ss_pred HHHHHHHHHHHHHHhhCCcchhh--HHHHHHHHHHhHHHhhhHHHHHHHH--h-H-------------hHH-HHHHHHHH
Q 016656 181 LNLITISSTWARVIDVMDSESGS--RLFGFIGAGATLGQLFGSLFAAGMA--F-L-------------GPY-LLLFAACL 241 (385)
Q Consensus 181 ~~~~~~slfWa~~~di~~~~eak--R~fgligag~~lG~I~G~~l~~~la--~-~-------------g~~-lll~aa~l 241 (385)
.+.....-+-++++|+++++|++ +.++..+...++|.++|+.++++.. . + +.. .+++++++
T Consensus 127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~ 206 (477)
T TIGR01301 127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL 206 (477)
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence 33334446789999999999875 6899999999999999999988752 1 1 222 56777777
Q ss_pred HHHHHHHHHHH
Q 016656 242 MELAAQSSKGI 252 (385)
Q Consensus 242 ~~l~~~~~~~l 252 (385)
+.++.+.....
T Consensus 207 l~i~~l~t~~~ 217 (477)
T TIGR01301 207 LAILTYIALSA 217 (477)
T ss_pred HHHHHHHHeee
Confidence 76666654443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-07 Score=91.23 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHH-HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGL-FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l-~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
.++...+..|+..++.++..|+-+....+ .|.+.. -++ .......+.+..|+.|+++| |+||||++......+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~D--r~g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLAD--QYGAKRSALQGMLACGL 93 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHH--hhcchHHHHHHHHHHHH
Confidence 45566667788888889999988765543 665443 233 43445566889999999999 99999998877666555
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+.+......... . . ...| ++++ .|.+ ..+-....
T Consensus 94 ~~~~~~~~~~~~~~-~---------------------~-------------~~~~----~l~~--~r~l---~G~~~~~~ 129 (392)
T PRK12382 94 AGLAYLLAAILPVS-A---------------------P-------------FKFA----LLVV--GRLI---LGFGESQL 129 (392)
T ss_pred HHHHHHhhhccccc-h---------------------h-------------HHHH----HHHH--HHHH---HHHHHHHH
Confidence 44443332111100 0 0 0012 1221 2333 12222233
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP 232 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~ 232 (385)
.....+++.|.+++||+.|..++.+.+.+.|.++||.+++++. ..|.
T Consensus 130 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 130 LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 3445567899999999999999999999999999999998876 3454
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-07 Score=92.45 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 27 TSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 27 ~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
.+++..+.+..|....+.++..|+-+....+ .|.+.. .++.........+..|+.|+++| |+||||++......+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D--r~g~r~~l~~~~~~~ 91 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYAD--TLGPKKAVVFGLCGC 91 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHh--ccCCcchHHHHHHHH
Confidence 4577778888899999999999999976654 564433 34444545566899999999999 999999999888776
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++..+.+++....... .....| ++++ .|.+ ......
T Consensus 92 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~----~l~~--~r~l---~G~~~~ 127 (399)
T PRK05122 92 ALSGLLYLLAGLLAAW-----------------------------------PVLSLL----LLLL--GRLL---LGIGES 127 (399)
T ss_pred HHHHHHHHHhhhhhcc-----------------------------------chhHHH----HHHH--HHHH---HHhhHH
Confidence 6655544443221100 000011 1111 1222 122223
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY 233 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~ 233 (385)
......-++++|.++.||+.|..++.+.+.++|.++|+.+++.+. ..|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 178 (399)
T PRK05122 128 LAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLA 178 (399)
T ss_pred hhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHH
Confidence 333344567789999999999999999999999999999998876 44544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-06 Score=87.92 Aligned_cols=153 Identities=14% Similarity=0.016 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 016656 36 CFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLL 113 (385)
Q Consensus 36 ~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~ 113 (385)
..++-..+..+.-|.-+.+..+.|.+. ..++.......+.+..++.|+++| |++||+++......+++..+++++.
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSD--RYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHh--hcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 455566677777787777666655433 334343444455889999999999 9999999877666655444444331
Q ss_pred HhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 114 WQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARV 193 (385)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~ 193 (385)
.. .| ++++ .|.+ .............+++
T Consensus 92 ~~-------------------------------------------~~----~l~~--~~~l---~G~~~~~~~~~~~~~~ 119 (401)
T PRK11043 92 ES-------------------------------------------AA----QLLV--LRFV---QAVGVCSAAVIWQALV 119 (401)
T ss_pred cC-------------------------------------------HH----HHHH--HHHH---HHhhhHHHHHHHHHHH
Confidence 10 12 1221 1322 1221222334667889
Q ss_pred HhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 194 IDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 194 ~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
+|.++.+++.+.++.+..+.++|..+||.+++++. ..+.+ .+...+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~ 170 (401)
T PRK11043 120 IDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAIT 170 (401)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999886 44543 444444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-07 Score=92.89 Aligned_cols=138 Identities=9% Similarity=-0.052 Sum_probs=82.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhcccc
Q 016656 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSN 140 (385)
Q Consensus 61 e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (385)
++..++.........+..++.|+++| |++||+++.+....+++..++++.......
T Consensus 61 ~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 116 (438)
T TIGR00712 61 GELGFALSAISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILSAAVMLLMGFVPWATS---------------------- 116 (438)
T ss_pred hHhHHHHHHHHHHHHHhhhccchhhh--ccCCceehHHHHHHHHHHHHHHhccccccc----------------------
Confidence 34445444555566888999999999 999999887766665555444433211000
Q ss_pred CCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhh
Q 016656 141 AKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFG 220 (385)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G 220 (385)
..| ... ++...............-..+.|.++++|+.+..|+.+.+.++|+.+|
T Consensus 117 -----------------~~~-----~l~----~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~ 170 (438)
T TIGR00712 117 -----------------SIA-----IMF----VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIP 170 (438)
T ss_pred -----------------hHH-----HHH----HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHH
Confidence 011 111 111112222222333445678899999999999999999999999999
Q ss_pred HHHHHHH-Hh-HhHH-HHHHHHHHHHHHHHH
Q 016656 221 SLFAAGM-AF-LGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 221 ~~l~~~l-a~-~g~~-lll~aa~l~~l~~~~ 248 (385)
+.+.+.. .. .+-+ .+++.+++.++....
T Consensus 171 ~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 171 PLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 8776654 32 3333 455544444443333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-06 Score=90.32 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=100.2
Q ss_pred hhhccCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhH
Q 016656 18 VFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKA 95 (385)
Q Consensus 18 ~~~~i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~v 95 (385)
..++.+++..+.+....+.+++.....+..-|..+.+..+.|.+.- -++....+..+.+..++.|+++| |+|||++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~G~r~~ 103 (476)
T PLN00028 26 RLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCD--LYGPRYG 103 (476)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHH
Confidence 4456666667777777777888888888888888888766665433 23333334455777899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHH
Q 016656 96 LVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFF 175 (385)
Q Consensus 96 l~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfy 175 (385)
+.......++..+++++.-. .|. +++ .|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~s-------------------------------------------~~~----l~~--~r~l- 133 (476)
T PLN00028 104 SAFLLMLTAPAVFCMSLVSS-------------------------------------------ATG----FIA--VRFF- 133 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------------------------------------------HHH----HHH--HHHH-
Confidence 87766655555444433211 110 111 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 176 LWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 176 iw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
...... .....-.+++|.++++++.+..|+...++++|..+|+.+...+
T Consensus 134 --~G~~~~-~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 134 --IGFSLA-TFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred --HHHHHH-hhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121111 1122234689999999999999999988888888877665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-07 Score=93.76 Aligned_cols=165 Identities=11% Similarity=0.025 Sum_probs=103.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh-HHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP-GLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 26 E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp-~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
.++-++.+++.+++.-.....+-...+.+-.+.|.+.-. ++..+. +....+..++.|+++| |+|||+++......+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA--IIGARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH--HhChHHHHHHHHHHH
Confidence 344444444444444443344444444444445543332 333344 4445788899999999 999999998887777
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++..+++++... .| ++++ .|.+ ..+...
T Consensus 84 ~~~~~~~~~~~~-------------------------------------------~~----~l~~--~r~l---~G~~~~ 111 (412)
T TIGR02332 84 GIASTATMFATG-------------------------------------------PE----SLYL--LRIL---VGIAEA 111 (412)
T ss_pred HHHHHHHHHhcC-------------------------------------------HH----HHHH--HHHH---HHHHHh
Confidence 666666554211 12 1222 2332 333344
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-------HhHH-HHHHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-------LGPY-LLLFAACLMEL 244 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-------~g~~-lll~aa~l~~l 244 (385)
.......++++|.++++++.+..++...+.++|.++|+.+++++.. .|.+ .+++.++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~ 180 (412)
T TIGR02332 112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVI 180 (412)
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHH
Confidence 4456777889999999999999999999999999999999888752 2443 55555544433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.1e-07 Score=88.71 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=105.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHH
Q 016656 25 HETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (385)
Q Consensus 25 ~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~ 102 (385)
++.+.++..++.+|+........-++.+++..+.|.+. ..++.........+..++.|+++| |+|||+++......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d--r~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME--IIPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHH
Confidence 34444555556666666666777777777776666543 334444445566888999999999 99999998776666
Q ss_pred HHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHH
Q 016656 103 FSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLN 182 (385)
Q Consensus 103 f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~ 182 (385)
+++..++.++... .| .+. +.|.+ .....
T Consensus 82 ~~i~~~l~~~~~~-------------------------------------------~~-----~~~-~~~~l---~G~~~ 109 (394)
T PRK03699 82 MILAVAGLMFSHS-------------------------------------------LA-----LFS-IAMFV---LGVVS 109 (394)
T ss_pred HHHHHHHHHHcch-------------------------------------------HH-----HHH-HHHHH---HHHhh
Confidence 5555444443211 12 111 11222 23223
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH--hHhHH-HHHHHHHHH
Q 016656 183 LITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA--FLGPY-LLLFAACLM 242 (385)
Q Consensus 183 ~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la--~~g~~-lll~aa~l~ 242 (385)
.......++++.|.++.+++.+..++.+.+.++|++++|.+++.+. ..+.+ .+.+.+++.
T Consensus 110 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~ 172 (394)
T PRK03699 110 GITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVY 172 (394)
T ss_pred HhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3445567888999999888888999999999999999998887764 23443 555444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-07 Score=92.34 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHhh----hchhhhhhccCccchh-HHHHHHH-HHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVL----PLRDEGAISLGLSKLP-GLFVGSL-ILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilr----pv~d~l~~s~Gae~lp-~l~~~~~-~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+.++...|+..+-.++.| +..+.+..+.|.+... ++..+.+ ....+..|+.|+++| |+|||+++.......+
T Consensus 28 ~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~l~~~~~~~~ 105 (467)
T PRK09556 28 MQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD--GKNTKQFLPFLLILSA 105 (467)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh--ccCccchHHHHHHHHH
Confidence 334444444444444444 3344444445654432 3333333 344788999999999 9999999887776666
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
+..++++++...... + .| .+. ++..........
T Consensus 106 ~~~~~~~~~~~~~~~----~----------------------------------~~-----~l~----~~r~l~G~~~~~ 138 (467)
T PRK09556 106 ICMLGFGASLGSGSV----S----------------------------------LG-----LMI----ALWALSGFFQST 138 (467)
T ss_pred HHHHHHHHHHhcccc----h----------------------------------HH-----HHH----HHHHHHHHHHhc
Confidence 665555554321100 0 12 221 121122332233
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
..+..-.+++|.++++|+.+..|+.+++.++|.++|+.+..++.
T Consensus 139 ~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 139 GGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred cchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 33445578999999999999999999999999999998876654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-06 Score=85.48 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
.+..+...+|+..+.+.+.-|+-+.+-.+.|.+.. -++....+...++.+++.|++.| |+|||+++.+....+++.
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~--r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK--KLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHH
Confidence 35667778888899999999999988666666543 23343445566999999999999 999999998888777776
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.+++........ .| .+. +.+.+ ...-....-
T Consensus 82 ~~l~~~~~~~~~----------------------------------------~~-----~~l-~~~~l---~G~g~g~~~ 112 (410)
T TIGR00885 82 AFLFWPAAEIMN----------------------------------------YT-----LFL-VGLFI---LTAGLGFLE 112 (410)
T ss_pred HHHHHHHHhhcc----------------------------------------HH-----HHH-HHHHH---HHhhHHHHH
Confidence 665543221000 12 221 01111 111112122
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
...-.++++..+++++.|..++...+.++|..+||.+++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223357888899999999999999999999999999988773
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-06 Score=88.14 Aligned_cols=275 Identities=16% Similarity=0.160 Sum_probs=163.6
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCc--cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHH
Q 016656 23 HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (385)
Q Consensus 23 ~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Ga--e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~ 99 (385)
.+++.+..+...+.+|+-.+.+++..|.-.--..+ .|- +++--++-.....++++.|+||.++| |++.||-+.+.
T Consensus 2 ~~~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~D--klg~kK~Ll~~ 79 (412)
T PF01306_consen 2 YYFKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISD--KLGLKKHLLWF 79 (412)
T ss_dssp CCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHH--HCTTCSHHHHH
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcc--hhhhhHHHHHH
Confidence 35667778888888888888899999887665554 454 33334454555677999999999999 99977776655
Q ss_pred HHHHHHHHHHHHH-HHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCcccc---ccchhhhhhHHHH
Q 016656 100 HRFFSVSLLVFFL-LWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGD---HGWFYVSVRMGFF 175 (385)
Q Consensus 100 ~~~f~~~~llf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~---~~w~~~~~~~lfy 175 (385)
++...+....|.. ...+.. |. ..|++ + -+|.+ ..|
T Consensus 80 i~~l~~l~~pff~~v~~pll-------------------~~------------------n~~lg~iig-~i~l~--~~f- 118 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLL-------------------QS------------------NFWLGAIIG-GIYLG--LVF- 118 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHH-------------------HT------------------T-HHHHHHT-TTTTT--TTT-
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HH------------------HHHHHHHHH-HHHHH--HHH-
Confidence 5443222222221 111110 00 01210 0 01110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcchhhHH---HHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHH
Q 016656 176 LWVALLNLITISSTWARVIDVMDSESGSRL---FGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 176 iw~~~~~~~~~slfWa~~~di~~~~eakR~---fgligag~~lG~I~G~~l~~~la~~g~~-lll~aa~l~~l~~~~~~~ 251 (385)
+. .+.+ .|....+-.+|. ||-.=+.|++|..+++.++|.+-.++|. .+.++.++..+..++ ..
T Consensus 119 ------~~-~~~~-----~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~ll-l~ 185 (412)
T PF01306_consen 119 ------NA-GVPL-----SEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLL-LL 185 (412)
T ss_dssp ------TT-HHHH-----HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred ------cc-cchH-----HHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHH-HH
Confidence 11 1112 244434444443 9999999999999999999998877765 444444332222221 12
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 016656 252 IYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVS 331 (385)
Q Consensus 252 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~ 331 (385)
+.|.... +..+ .. |+. +.|+.+.+. +.+..+++.|....+.++++......
T Consensus 186 ~~~~~~~----------~~~~--~~-~~~---------------~~~~~~~~~-~~~~~l~k~~~fw~~~l~v~g~~~~Y 236 (412)
T PF01306_consen 186 LLKPDVP----------PQAE--VA-DAL---------------GAKKDKVSL-KDVLSLFKMRNFWFFVLFVIGVAAIY 236 (412)
T ss_dssp SS---SS----------SSS---SS-TTS---------------SS------H-HHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HcCCcCc----------hhhh--hh-ccc---------------ccCCCCCcH-HHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 1121110 0000 00 000 011111233 44677899999999999888888889
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 332 SFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 332 ~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
+..|.|+..+-.+.++++++-++.+|...+..-++-+++ .+.++++++|+|
T Consensus 237 ~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~-m~~~p~li~rig 287 (412)
T PF01306_consen 237 DVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALM-MFFSPWLINRIG 287 (412)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 999999999999999999999999999977766666555 455799999998
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-06 Score=84.13 Aligned_cols=149 Identities=13% Similarity=0.080 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh-HHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 27 TSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP-GLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 27 ~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp-~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
...+..+++++|...+...+.-++-|.+-.+.|.+... ++.... +....+..++.|+++| |+||||++......++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d--r~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHH
Confidence 33556677778888888888888888875556665442 444444 4455888999999999 9999999999988887
Q ss_pred HHHHHHHHHH-hhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH-H
Q 016656 105 VSLLVFFLLW-QSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-N 182 (385)
Q Consensus 105 ~~~llf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~ 182 (385)
+..+++.... ..+ .| ++++ .|.+ .+. .
T Consensus 103 ~~~~l~~~~~~a~~-----------------------------------------~~----~ll~--~r~l----~G~g~ 131 (438)
T PRK10133 103 LGAALFWPAAEIMN-----------------------------------------YT----LFLV--GLFI----IAAGL 131 (438)
T ss_pred HHHHHHHHHHhcCC-----------------------------------------HH----HHHH--HHHH----HHHHH
Confidence 7776654221 111 11 0111 1332 222 2
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 183 LITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 183 ~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.......-.+++|..+.+++++..++..++..+|.++|+.+++.+.
T Consensus 132 g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344556778877777777789999999999999998877543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-06 Score=86.96 Aligned_cols=129 Identities=13% Similarity=0.011 Sum_probs=90.6
Q ss_pred HHhhhchhhhhhccCccchh--HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 016656 45 FVVLPLRDEGAISLGLSKLP--GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYL 122 (385)
Q Consensus 45 ~ilrpv~d~l~~s~Gae~lp--~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~ 122 (385)
..+-|+.+.+..+.|.+.-. ++....+....+..|..|+++| |+|||+++......+++..++.++...
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~d--r~G~r~~l~~~~~l~~~~~~~~~~a~~------- 96 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQ--HVSERRSVAISLLLIAVGALMRELYPQ------- 96 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH--HhCchHHHHHHHHHHHHHHHHHHHCcc-------
Confidence 55667777777776665443 3333434555888999999999 999999999999999888887776322
Q ss_pred cchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcch
Q 016656 123 SKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSES 201 (385)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~e 201 (385)
.| +++ +.|++ .+. ........-..+.|.++ ++
T Consensus 97 ------------------------------------~~----~ll--~~r~l----~Gig~~~~~~~~~~~~~~~~~-~~ 129 (393)
T PRK09705 97 ------------------------------------SA----LLL--SSALL----GGVGIGIIQAVMPSVIKRRFQ-QR 129 (393)
T ss_pred ------------------------------------hH----HHH--HHHHH----HHhHHHHHhhhhhHHHHHHcc-cc
Confidence 11 011 12443 222 22222334456788886 78
Q ss_pred hhHHHHHHHHHHhHHHhhhHHHHHHHHh
Q 016656 202 GSRLFGFIGAGATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 202 akR~fgligag~~lG~I~G~~l~~~la~ 229 (385)
+.+..|+..++.++|..+|+.+++++..
T Consensus 130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~~ 157 (393)
T PRK09705 130 TPLVMGLWSAALMGGGGLGAAITPWLVQ 157 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999888763
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=85.08 Aligned_cols=145 Identities=16% Similarity=0.094 Sum_probs=87.9
Q ss_pred HHHHhhhchhhhhhccCccchh-HHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016656 43 AYFVVLPLRDEGAISLGLSKLP-GLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIG 120 (385)
Q Consensus 43 ~y~ilrpv~d~l~~s~Gae~lp-~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~ 120 (385)
+....-|+.+.+..+.|.+.-. +...+. +....+..+..|+++| |+|||+++......+....+.... ..+
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~D--r~grr~~~~~~~~~~~~~~~~~~~--~~~--- 78 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLD--RAFKRWFLFGSLATFAAAAGRLLD--PFN--- 78 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHHHH--hcc---
Confidence 4444555566665555543332 333444 3445788888999999 999998765544433222111100 000
Q ss_pred cccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Q 016656 121 YLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSE 200 (385)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~ 200 (385)
.+ ++. +.|++ .+.........+..++|.++++
T Consensus 79 --------------------------------------~~----~l~--~~R~l----~G~g~~~~~~~~~~~~~~~~~~ 110 (368)
T TIGR00903 79 --------------------------------------YE----WLL--ACQLL----AALGQPFLLNAFAPAASQIREE 110 (368)
T ss_pred --------------------------------------HH----HHH--HHHHH----HHhHhHHHHHHHHHHHHHcCHH
Confidence 11 122 22554 3333333446677789999999
Q ss_pred hhhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHHHH
Q 016656 201 SGSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAACLM 242 (385)
Q Consensus 201 eakR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~l~ 242 (385)
|+.|..++...+.++|.++|+.++.++.. .|-+ .+++.+++.
T Consensus 111 ~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~ 154 (368)
T TIGR00903 111 RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA 154 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999999999999999999999988873 4543 444434333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.4e-06 Score=83.17 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccchh-HHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHHHH-HHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLP-GLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLI-HRFFSV 105 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~lp-~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~-~~~f~~ 105 (385)
....++..|+...+.....|.-+....+ .|.+.-. ++.. +......++.++.+.++| |++|||.+.+. ....++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~d--r~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSD--KRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHH
Confidence 3444556888999999999988887665 5654442 4443 344556788888888899 99999875433 222222
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
...++++.-. .| ++++ ++++ ..+.....
T Consensus 95 ~~~~~~~~~~-------------------------------------------~~----~l~~-~~~~----~~~~~~~~ 122 (393)
T PRK15011 95 ACTLFAWNRN-------------------------------------------YF----VLLF-VGVF----LSSFGSTA 122 (393)
T ss_pred HHHHHHHhhH-------------------------------------------HH----HHHH-HHHH----HHHHHHhh
Confidence 2222222110 22 1111 1112 23333344
Q ss_pred HHHHHHHHHhhCCcchhh--HHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGS--RLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQ 247 (385)
Q Consensus 186 ~slfWa~~~di~~~~eak--R~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~ 247 (385)
......++.|..+.+++. ...++.+++.++|.++||.+++++. .+|.+ .+++.+++.++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~ 188 (393)
T PRK15011 123 NPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGV 188 (393)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 445666777777665443 3347999999999999999999997 56764 55555544433333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-06 Score=87.10 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=113.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 24 ~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
++.++.+..+.+..|++.+.+..+-++.+.+..+.|.+.. .++.......+.+..++.|+++| |+|||+++.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD--RYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHH
Confidence 3445566667777788888999888888888777666443 34444445566888999999999 9999999887776
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++..+++++... .| +++ +...+....
T Consensus 94 ~~~~~~~~~~~~~~-------------------------------------------~~----~l~-----~~~~l~G~~ 121 (496)
T PRK03893 94 LFSVGTLACGFAPG-------------------------------------------YW----TLF-----IARLVIGMG 121 (496)
T ss_pred HHHHHHHHHHHHhH-------------------------------------------HH----HHH-----HHHHHHHHH
Confidence 66665555554211 12 122 122223333
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAA 239 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa 239 (385)
.........+++.|.++.+++.+.+++...+.++|.++||.+.+.+. ..+.. .+.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~ 181 (496)
T PRK03893 122 MAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI 181 (496)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 34455677788999999999999999999999999999999988876 33443 444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-06 Score=85.50 Aligned_cols=130 Identities=16% Similarity=0.108 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcc
Q 016656 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPK 146 (385)
Q Consensus 67 ~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (385)
+..++....+.+++.|+++| |+|||+++.+....+++.-++.++.......+
T Consensus 69 ~~~~~~~~~ig~~~~G~l~D--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 120 (432)
T PRK10406 69 FAAGFLMRPIGGWLFGRIAD--KHGRKKSMLISVCMMCFGSLVIACLPGYETIG-------------------------- 120 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHhhcCCchhHH--------------------------
Confidence 44555566788899999999 99999999998888877776666532211000
Q ss_pred hhcccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHH
Q 016656 147 AAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAA 225 (385)
Q Consensus 147 ~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~ 225 (385)
.+ ..+.+. +.|.. .++ ..........+++|.++++|+.+..++...+...|.++|+.++.
T Consensus 121 ------------~~--~~~~l~-~~R~l----~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 121 ------------TW--APALLL-LARLF----QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred ------------HH--HHHHHH-HHHHH----HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000111 12332 333 23345577789999999999999999999888888888887765
Q ss_pred HHHh---------HhHH-HHHHHHHHHH
Q 016656 226 GMAF---------LGPY-LLLFAACLME 243 (385)
Q Consensus 226 ~la~---------~g~~-lll~aa~l~~ 243 (385)
.+.. .|-+ ++++.+++.+
T Consensus 182 ~~~~~~~~~~~~~~gWr~~F~i~~~~~l 209 (432)
T PRK10406 182 VLQQTLEDAELREWGWRIPFALGAVLAV 209 (432)
T ss_pred HHHHhCCHHHHhccchHHHHHHHHHHHH
Confidence 5542 2333 6666555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-06 Score=86.96 Aligned_cols=143 Identities=9% Similarity=-0.016 Sum_probs=87.9
Q ss_pred hhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhh
Q 016656 51 RDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESV 128 (385)
Q Consensus 51 ~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~ 128 (385)
.+++..+.|.+ +..++....+....+..|+.|+++| |+|||+++......+++..+++++...
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~~~~~~~~~------------- 106 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVN--RFGCRPVVIAGGLLASLGMILASFSSN------------- 106 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHH--HcCchHHHHhhHHHHHHHHHHHHHhhh-------------
Confidence 44444445543 3344444444455788899999999 999999988777666555555444211
Q ss_pred hhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHH
Q 016656 129 SHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFG 207 (385)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fg 207 (385)
.|. ++. ..|++ .++ .........+.++|.++ +++.+..|
T Consensus 107 ------------------------------~~~----l~~-~~~~l----~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g 146 (455)
T TIGR00892 107 ------------------------------VIE----LYL-TAGFI----TGLGLAFNFQPSLTMLGKYFY-RRRPLANG 146 (455)
T ss_pred ------------------------------HHH----HHH-HHHHH----HHhcchhhhhHHHHHHHHHHH-hhHHHHHH
Confidence 120 111 11222 222 11112233467889885 78899999
Q ss_pred HHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 208 FIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 208 ligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
+..++.++|..+||.+++.+. ..|.+ .+++.+++.+++..+
T Consensus 147 ~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~ 189 (455)
T TIGR00892 147 LAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVC 189 (455)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876 44643 555555544444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-05 Score=80.70 Aligned_cols=258 Identities=15% Similarity=0.044 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh-HHH--HHH-HHHHHHHHHHHHH-hhCCCCCCchhHHHHHHHHH-
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP-GLF--VGS-LILTLIAAPVSTL-IFSLPNLSKAKALVLIHRFF- 103 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp-~l~--~~~-~~~~~l~~p~y~~-L~~~~r~~r~~vl~~~~~~f- 103 (385)
.+.++...|.--..+++..|.-+.+..+.|.+.-. +++ ++. +...++.+|+.++ .+| |+||||...+.....
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~--~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSW--RLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCcchhHHHHHHHHH
Confidence 45666777888899999999999999987664432 443 222 3455899999966 688 999999854433221
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++....++.. .+.. +...| ... +. +..
T Consensus 81 ~~~~~~~~~~-~~~~-------------------------------------~~~~~-----~~~----~~------~~~ 107 (390)
T TIGR02718 81 SACLASLALV-GPDV-------------------------------------AGAGW-----AVG----LL------ACA 107 (390)
T ss_pred HHHHHHHHcC-Ccch-------------------------------------hhHHH-----HHH----HH------HHH
Confidence 1111111110 0000 00012 111 11 111
Q ss_pred HHHHHHHHHHHhhC-CcchhhHHHHH----HHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhc
Q 016656 184 ITISSTWARVIDVM-DSESGSRLFGF----IGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEI 256 (385)
Q Consensus 184 ~~~slfWa~~~di~-~~~eakR~fgl----igag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~ 256 (385)
...+..--.++|.. ..+.++|..+. ...|..+|.++|+...+++. .+|.+ ++++.+++..++......+ +
T Consensus 108 ~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~-~-- 184 (390)
T TIGR02718 108 SLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL-K-- 184 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-C--
Confidence 11122222334433 23333333344 55666777777777666665 55765 6666665554444443221 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 016656 257 PRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYF 336 (385)
Q Consensus 257 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f 336 (385)
++ +++++ + +++ +..+.++.++|+|.+..+....+++.......+-
T Consensus 185 ~~-------------~~~~~--~-----------------~~~---~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 229 (390)
T TIGR02718 185 DR-------------AVASP--E-----------------APL---ARRASLFRFFRRPLAWSLLALALLSAMTAVSGFG 229 (390)
T ss_pred CC-------------CcCcc--c-----------------cch---hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 10 00000 0 000 1123466788889888777777776654333332
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 337 QKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 337 ~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
-...+..+. .-+++ ..|......++...+++.+..|++.+|+|.
T Consensus 230 ~~~~~l~~~-G~s~~---~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~ 273 (390)
T TIGR02718 230 LSKLYLVDA-GWPLE---WIGRLGMAGGAVTVLLGCGGGAWLVRRAGL 273 (390)
T ss_pred HhhHHHHhc-CCCHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 223333332 22222 367777777877888888788999999873
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-06 Score=88.88 Aligned_cols=75 Identities=12% Similarity=-0.036 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHHHHHH-HHHHHHHHHHHhhCCCCCCc-hhHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFVGSLI-LTLIAAPVSTLIFSLPNLSK-AKALVLIHRFFS 104 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~~~~~-~~~l~~p~y~~L~~~~r~~r-~~vl~~~~~~f~ 104 (385)
....+.+++|+...+|++.-|.......+ .|.+.. -++..+.+. ..++..|+.|+++| |++| |+++.+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~d--r~g~~r~~~~~~~~~~~ 80 (418)
T TIGR00889 3 TTAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIAD--KWLSAQKVYAVCHFAGA 80 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 34456788899999999998887777766 565443 355555544 55999999999999 9965 656655444433
Q ss_pred H
Q 016656 105 V 105 (385)
Q Consensus 105 ~ 105 (385)
+
T Consensus 81 ~ 81 (418)
T TIGR00889 81 L 81 (418)
T ss_pred H
Confidence 3
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.5e-07 Score=86.64 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccC
Q 016656 73 LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQG 152 (385)
Q Consensus 73 ~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (385)
...+..|+.|+++| |+||||++......+++..+++++.......
T Consensus 47 ~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 91 (394)
T TIGR00883 47 ARPLGAIVFGHFGD--RIGRKKTLVITLLMMGIGTLLIGLLPSYATI--------------------------------- 91 (394)
T ss_pred HhhhHHHHhhhhhh--hhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---------------------------------
Confidence 33567899999999 9999999988777776666555543221100
Q ss_pred CCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 153 STANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 153 ~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
..|. .|.+. +.|.+ ...-........-.++.|.++++|+.+..++...+..+|.++|+.++..+.
T Consensus 92 -----~~~~--~~~~~-~~r~l---~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 92 -----GIWA--PILLL-LARLI---QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred -----HHHH--HHHHH-HHHHH---HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0110 00111 11221 111112222344568999999999999999999999999999998877664
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-06 Score=89.35 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=83.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCC
Q 016656 65 GLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKE 143 (385)
Q Consensus 65 ~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (385)
++....+. ...+..++.|+++| |+|||+++.+.....++..+++.+.....
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~l~~~~~~~~~~~~~~~~~~~~~-------------------------- 130 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAG--KYVFKWSIGIGMFLSSVISIVIPWAAGGG-------------------------- 130 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHH--HhCcchhhHHHHHHHHHHHHHHHHHHHcC--------------------------
Confidence 33334444 44888899999999 99999998877766555544433321100
Q ss_pred CcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHH
Q 016656 144 DPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLF 223 (385)
Q Consensus 144 ~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l 223 (385)
.| ++++ .|++ ..............+++|.++++|+.+..|+..+|.++|.++|+.+
T Consensus 131 ---------------~~----~l~~--~r~~---~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l 186 (465)
T TIGR00894 131 ---------------IA----LVVF--CRVI---QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPI 186 (465)
T ss_pred ---------------ch----HHHH--HHHH---HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1221 1333 2222344455777889999999999999999999999999999999
Q ss_pred HHHHHhH--hHH-HHHHHHHHH
Q 016656 224 AAGMAFL--GPY-LLLFAACLM 242 (385)
Q Consensus 224 ~~~la~~--g~~-lll~aa~l~ 242 (385)
++.+... +-. .+++.+++.
T Consensus 187 ~~~l~~~~~gw~~~f~i~~~~~ 208 (465)
T TIGR00894 187 SGWLCESWGGWPMIFYVFGIVG 208 (465)
T ss_pred HHHHHhccCCCCeehhhhhHHH
Confidence 9988743 533 555544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.2e-07 Score=89.09 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=84.7
Q ss_pred HHHHHHHHhhC-CcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh-------HH-HHHHHHHHHHHHHHHHHHHhhhc
Q 016656 187 SSTWARVIDVM-DSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG-------PY-LLLFAACLMELAAQSSKGIYKEI 256 (385)
Q Consensus 187 slfWa~~~di~-~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g-------~~-lll~aa~l~~l~~~~~~~l~~~~ 256 (385)
.-++++.+|++ +++|+.|..++-..++++|.++++.+++.+. .++ .. ...+.+++..+...... ...
T Consensus 118 ~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~---~~~ 194 (437)
T TIGR00792 118 IPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICF---FGT 194 (437)
T ss_pred ccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHH---cCC
Confidence 35678889988 5789999999999999999888877766654 222 12 33333333322222211 111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 016656 257 PRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYF 336 (385)
Q Consensus 257 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f 336 (385)
..++ + + .+ . +++.+.+..+.+|.++++|.+..+++..++..+.......
T Consensus 195 ~e~~--------~--~--~~---~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (437)
T TIGR00792 195 KERY--------S--E--IP---K----------------NIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNG 243 (437)
T ss_pred EecC--------C--C--CC---c----------------ccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 1000 0 0 00 0 0001135678899999999988877766666554333221
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 337 QKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 337 ~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
...-+.+....+++ . .+.+....++..++...+ .+++.+|+|
T Consensus 244 ~~~~~~~~~~~~~~-~---~~~~~~~~~i~~ii~~~~-~~~l~~r~g 285 (437)
T TIGR00792 244 VQVYYFTYVLGDPE-L---FSYMGSIAIVAGLIGVLL-FPRLVKKFG 285 (437)
T ss_pred hhheeEeeecCChH-H---HHHHHHHHHHHHHHHHHH-HHHHHHHhC
Confidence 11111111112222 2 333444445555555444 578999887
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-07 Score=97.85 Aligned_cols=313 Identities=12% Similarity=0.010 Sum_probs=156.4
Q ss_pred HHHHHhhhchhhhhhccCccch-hHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016656 42 SAYFVVLPLRDEGAISLGLSKL-PGLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSI 119 (385)
Q Consensus 42 ~~y~ilrpv~d~l~~s~Gae~l-p~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~ 119 (385)
...+...++.+++--..|...- .++..+.+- ...+..++.|.+.| |.+|+|.+.+....+++.-++|++......+
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~--r~~r~~~i~~g~ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGT--KLHRPIVIGIGCAIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhc--ccCcceEEEecHHHHHHHHHHHhChHHhcCC
Confidence 3345556666655555554332 344444444 34788888999999 9999999998888888888887765432211
Q ss_pred ccccchhhhhhhh----hhhhcc----ccCCCCcchhcccCCCC-CCCccccccchhhhhhHHHHHHHHHH-HHHHHHHH
Q 016656 120 GYLSKLESVSHLE----SLDAVS----SNAKEDPKAAVDQGSTA-NSADWGDHGWFYVSVRMGFFLWVALL-NLITISST 189 (385)
Q Consensus 120 ~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~-~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slf 189 (385)
|.......++.. ..+.-. .+..++..+......-. +. . |.+..++|++ .+. ......+.
T Consensus 125 -y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~r~l----~GiG~~~~~~~~ 193 (633)
T TIGR00805 125 -YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESL-M-----WLLFLVSQLL----RGIGATPIFPLG 193 (633)
T ss_pred -ccccccccccccccccccccccCCCCCCccccccccccccccCCCc-e-----ehhhHHHHHH----HhccCCcchhcC
Confidence 100000000000 000000 00000000000000000 00 1 1211134553 333 33445577
Q ss_pred HHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh----------------------HhH-H-HHHHHHHHHHHH
Q 016656 190 WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF----------------------LGP-Y-LLLFAACLMELA 245 (385)
Q Consensus 190 Wa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~----------------------~g~-~-lll~aa~l~~l~ 245 (385)
.++++|.++++++.+..|++.++..+|..+|+.+++++.. +|- + .+++.+++.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998762 122 2 355555444443
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHH
Q 016656 246 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLW 325 (385)
Q Consensus 246 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~ 325 (385)
+.....+-+ ++|....+. +.+..++.. ..++ .++...+......+....++.++++|..+...+..+
T Consensus 274 ~v~l~~~p~-------~lp~~~~~~-~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~ 340 (633)
T TIGR00805 274 SIPFFFFPK-------ALPKEGKRV-NVDVHETEK---LEKS--EDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQV 340 (633)
T ss_pred HHHHHhCcc-------ccCCccccc-chhhhhhhc---cccc--ccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 333222211 111000000 000000000 0000 000000000001234567888999999888777766
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 326 LSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 326 l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
+......-...-...+.++.+..+... .|.+....++...++..++.|++++|++
T Consensus 341 ~~~~~~~~~~~~lP~yl~~~~g~s~~~---ag~l~~~~~i~~~~vG~~l~G~l~~r~~ 395 (633)
T TIGR00805 341 IDSLAFNGYITFLPKYLENQYGISSAE---ANFLIGVVNLPAAGLGYLIGGFIMKKFK 395 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHH---HHHHhhhhhhhHHHHHHhhhhheeeeec
Confidence 654443322222233333444433333 4455555555555677777889988876
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-06 Score=84.25 Aligned_cols=137 Identities=11% Similarity=0.049 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 016656 36 CFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLL 113 (385)
Q Consensus 36 ~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~ 113 (385)
+.|....++...-|+.|.+..+.|.+.- -++.........+..++.|+++| |+||||++.+....+++..+.+ .
T Consensus 8 ~~~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~~~-~- 83 (355)
T TIGR00896 8 IALNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLAR--RFGEERSVAAGLLLIAAGILIR-S- 83 (355)
T ss_pred hhhcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhCchHHHHHHHHHHHHHHHHH-H-
Confidence 3355555667778888888777665443 34444445566899999999999 9999999887665544433322 1
Q ss_pred HhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 114 WQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARV 193 (385)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~ 193 (385)
..+ .| .+. +.|.+ ...............+
T Consensus 84 -~~~-----------------------------------------~~-----~l~-~~~~~---~g~g~~~~~~~~~~~~ 112 (355)
T TIGR00896 84 -APG-----------------------------------------TA-----LLF-AGTAL---IGVGIAIINVLLPSLI 112 (355)
T ss_pred -hcc-----------------------------------------HH-----HHH-HHHHH---HHHHHHHHhccchHHH
Confidence 100 12 111 11222 1211222233556678
Q ss_pred HhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 194 IDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 194 ~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.|.++ +++.|..++.+++.++|..+|+.+++.+.
T Consensus 113 ~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 113 KRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred HHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88885 68889999999999999999999988876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-06 Score=83.82 Aligned_cols=159 Identities=11% Similarity=0.098 Sum_probs=98.4
Q ss_pred CcCchhHH--HHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHH------HHHHHHHHHHHHHHHHhhCCCCCCc
Q 016656 23 HPHETSAL--LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLF------VGSLILTLIAAPVSTLIFSLPNLSK 92 (385)
Q Consensus 23 ~~~E~~~~--l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~------~~~~~~~~l~~p~y~~L~~~~r~~r 92 (385)
..+|.|+. ..+++..|++......+-+..+.+..+.|.++. ..+. ..++....+..++.|+++| |+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D--r~Gr 85 (434)
T PRK15075 8 ASRESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYID--RVGR 85 (434)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhh--hhch
Confidence 34455543 334445677777777777777777777654332 2221 1112222345678899999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhH
Q 016656 93 AKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRM 172 (385)
Q Consensus 93 ~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~ 172 (385)
||++......+++..+++++.......+ .|. ..++. +.|
T Consensus 86 r~~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------------------------~~~-~~~l~--~~R 124 (434)
T PRK15075 86 RKGLIVTLSIMASGTLLIAFVPGYATIG--------------------------------------LAA-PLLVL--LGR 124 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHH--------------------------------------HHH-HHHHH--HHH
Confidence 9999988887777766666532211000 000 00011 123
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 173 GFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 173 lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
++ .+. ........+.+++|.++++++.+..++.+.+.++|.++|+.+++.+.
T Consensus 125 ~l----~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 125 LL----QGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HH----hhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222 22223345688999999999999999999999999988888877764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.9e-06 Score=82.80 Aligned_cols=112 Identities=10% Similarity=-0.016 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhc
Q 016656 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAV 149 (385)
Q Consensus 70 ~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (385)
++..+.+-++++|+++| |+|||+++......+++..+++++......
T Consensus 73 ~~~~~~~g~~~~G~l~D--r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~------------------------------- 119 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGD--RLGRKRMLMLTVWMMGIATALIGLLPSFST------------------------------- 119 (438)
T ss_pred HHHHHhhHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHhcCCcHHH-------------------------------
Confidence 34445566778999999 999999999888888777666665322110
Q ss_pred ccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 150 DQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 150 ~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.+...-|.+. +.|.. .++ ..........+++|.++++++.+..+....|.++|.++|+.+...+.
T Consensus 120 ---------~~~~~~~~l~-~~R~l----~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 120 ---------IGWWAPVLLV-TLRAI----QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred ---------HHHHHHHHHH-HHHHH----HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000111 11322 232 22233455689999999999999999999999999999988777665
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-06 Score=86.41 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc---cCccch-hHHHHHH-HHHHHHHHHHHHHhhCCCC-CCchhHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS---LGLSKL-PGLFVGS-LILTLIAAPVSTLIFSLPN-LSKAKALVLIHRF 102 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s---~Gae~l-p~l~~~~-~~~~~l~~p~y~~L~~~~r-~~r~~vl~~~~~~ 102 (385)
.+..+++..++-.++|+...|..+.+..+ .|-+.. -....+. .....+..++.|+++| | +|||+++.+....
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laD--r~~G~~~~l~~~~~~ 88 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD--RVWGTKKTMVLGGIV 88 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH--hhcchHHHHHHHHHH
Confidence 34556667788899999999988888765 354433 2334444 3455888899999999 9 8999999888877
Q ss_pred HHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHH
Q 016656 103 FSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLN 182 (385)
Q Consensus 103 f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~ 182 (385)
.++.++++++... .| ++++ ++.+ ...-+
T Consensus 89 ~~~g~~~~~~~~~-------------------------------------------~~----~~~~--~~~l---~g~g~ 116 (475)
T TIGR00924 89 LMLGHFMLAMSIY-------------------------------------------PD----LIFY--GLGT---IAVGS 116 (475)
T ss_pred HHHHHHHHHhccc-------------------------------------------Hh----HHHH--HHHH---HHhcc
Confidence 7666665554211 11 1111 1222 12212
Q ss_pred HHHHHHHHHHHHhhCCcch---hhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 183 LITISSTWARVIDVMDSES---GSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 183 ~~~~slfWa~~~di~~~~e---akR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
........++++|.++.+| +.+.|++...+.++|.++||.+++++. ..|.. .+..+++.+.++.+.
T Consensus 117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 2333456788999998876 555899999999999999999999887 45654 555555544444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=82.69 Aligned_cols=113 Identities=11% Similarity=0.094 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchh
Q 016656 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAA 148 (385)
Q Consensus 69 ~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (385)
..+....+.+++.|+++| |+|||+++.+....+++..+++++.......+
T Consensus 65 ~~~l~~~ig~~~~G~l~D--r~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g---------------------------- 114 (490)
T PRK10642 65 VPFLIRPLGGLFFGMLGD--KYGRQKILAITIVIMSISTFCIGLIPSYATIG---------------------------- 114 (490)
T ss_pred HHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHhcccHHHHH----------------------------
Confidence 334556788999999999 99999999999999888877777653321000
Q ss_pred cccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 149 VDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 149 ~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
.|- -+.+. +.|++ .++ ........-.+++|.++++++.+.-++..+|..+|.++|+.+...+
T Consensus 115 ----------~~a--~~~l~-~~R~l----~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 115 ----------IWA--PILLL-LCKMA----QGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred ----------HHH--HHHHH-HHHHH----HHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00111 22443 333 3344556778899999999999999999999999999998776655
Q ss_pred H
Q 016656 228 A 228 (385)
Q Consensus 228 a 228 (385)
+
T Consensus 178 ~ 178 (490)
T PRK10642 178 S 178 (490)
T ss_pred H
Confidence 4
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.2e-06 Score=85.76 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh---H-H-HHHHHHHHHHHHHHHHHHHhhhcC
Q 016656 185 TISSTWARVIDVM-DSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG---P-Y-LLLFAACLMELAAQSSKGIYKEIP 257 (385)
Q Consensus 185 ~~slfWa~~~di~-~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g---~-~-lll~aa~l~~l~~~~~~~l~~~~~ 257 (385)
...-+++...|++ +++||.|.++....++++|+++++.++..+. .+| . . ....+.+..++...+........
T Consensus 123 ~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~- 201 (473)
T PRK10429 123 MDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNV- 201 (473)
T ss_pred HcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCc-
Confidence 3346888999999 7999999999988989998887766655432 222 1 1 12222222222222211111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 016656 258 RRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQ 337 (385)
Q Consensus 258 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~ 337 (385)
+| +.. ++ .. . .+++.+.+..+.++.++++|.++.+++..+++.+......-.
T Consensus 202 --~e-----~~~--~~-~~---~---------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~ 253 (473)
T PRK10429 202 --HE-----VYS--SD-NQ---V---------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGF 253 (473)
T ss_pred --ee-----cCC--cc-cc---c---------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 000 00 00 0 001112367899999999999888877777665543332211
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 338 KVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 338 ~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
..-+. +.+-..++ ..+.+....++..++.+.+ .+++.+|+|
T Consensus 254 ~~y~~-~y~~~~~~---~~~~~~~~~~i~~ii~~~~-~~~l~~r~g 294 (473)
T PRK10429 254 AIYYF-TYVIGDAD---LFPYYLSYAGAANLVTLIL-FPRLVKSLS 294 (473)
T ss_pred eeeEE-EEECCCHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHcC
Confidence 11111 11111122 2455555556666666665 479999887
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-06 Score=87.18 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=133.5
Q ss_pred hhccCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc--cCccc-hhHHHHHHHHHH-HHHHHHHHHhhCCCCCC--c
Q 016656 19 FVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS--LGLSK-LPGLFVGSLILT-LIAAPVSTLIFSLPNLS--K 92 (385)
Q Consensus 19 ~~~i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s--~Gae~-lp~l~~~~~~~~-~l~~p~y~~L~~~~r~~--r 92 (385)
--+-|..+++......+..|+...++++.-|..+....+ -||+. .-++-++...+. .+.+|++|+-++ |.+ |
T Consensus 25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~--k~~~~k 102 (488)
T KOG2325|consen 25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSN--KTGSVK 102 (488)
T ss_pred cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccc--ccCCcc
Confidence 344555667788888889999999999999999999888 45543 356666666655 999999999999 777 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhh
Q 016656 93 AKALVLIHRFFSVSLLVFFLLWQ-SSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVR 171 (385)
Q Consensus 93 ~~vl~~~~~~f~~~~llf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~ 171 (385)
+|+..-.+..+..+ +++..+-+ ++. .+| +.. ++
T Consensus 103 ~Pli~s~ii~~~g~-llY~~l~~~~~~---------------------------------------~~y----~mL--~~ 136 (488)
T KOG2325|consen 103 KPLIVSFLIAIIGN-LLYLALAYVPNG---------------------------------------VKY----LML--VA 136 (488)
T ss_pred cCHHHHHHHHHHHH-HHHHHHHhcccc---------------------------------------hHH----HHH--HH
Confidence 88876655554333 33422222 110 033 122 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHh---------------HHHHH
Q 016656 172 MGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLG---------------PYLLL 236 (385)
Q Consensus 172 ~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g---------------~~lll 236 (385)
|++ .+++..+.+..=+|++|...++|+.|.+..++.|..+|.++||.+...++.++ +.+-+
T Consensus 137 R~l----~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w 212 (488)
T KOG2325|consen 137 RIL----TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAW 212 (488)
T ss_pred HHH----cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHH
Confidence 775 66777788899999999999999999999999999999999999988886221 12556
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 016656 237 FAACLMELAAQSSKGIYKEIP 257 (385)
Q Consensus 237 ~aa~l~~l~~~~~~~l~~~~~ 257 (385)
+.+++..++.......+++..
T Consensus 213 ~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 213 LMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHHHHHHHHHHHHHhheeecc
Confidence 666666666665555555533
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.2e-07 Score=93.09 Aligned_cols=124 Identities=14% Similarity=-0.058 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchh
Q 016656 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAA 148 (385)
Q Consensus 69 ~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (385)
..+..+++..++.|+++| |+|||+++.+.....++..++.++...
T Consensus 135 ~~~~g~~~g~~~~g~l~D--r~Grr~~~~~~~~~~~i~~~~~~~~~~--------------------------------- 179 (505)
T TIGR00898 135 CFFVGVLLGSFVFGYLSD--RFGRKKVLLLSTLVTAVSGVLTAFSPN--------------------------------- 179 (505)
T ss_pred HHHHHHHHHHHhHHHhhh--hccchHHHHHHHHHHHHHHHHHHHccc---------------------------------
Confidence 334455888999999999 999999988777666555444433111
Q ss_pred cccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 149 VDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 149 ~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.| .+. +.|.+ ............+.+++|.++++++.+..++...+.++|.++++.++..+.
T Consensus 180 ----------~~-----~~~-~~r~l---~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 180 ----------YT-----VFL-VFRLL---VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred ----------HH-----HHH-HHHHH---HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12 222 11222 333344456788999999999999999999999999999999998876554
Q ss_pred hHhHH-HHHHHHHHHHHHHHH
Q 016656 229 FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 229 ~~g~~-lll~aa~l~~l~~~~ 248 (385)
. .+ .+++.++..++...+
T Consensus 241 ~--wr~~~~~~~i~~~~~~~~ 259 (505)
T TIGR00898 241 D--WRWLQLAVSLPTFLFFLL 259 (505)
T ss_pred H--HHHHHHHHHHHHHHHHHH
Confidence 3 22 444444443333333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-05 Score=83.04 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCC-CCchhHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVLIHRFFS 104 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r-~~r~~vl~~~~~~f~ 104 (385)
.+..++...++.-++|+...+.......+ .|.+.- .++.......+....++.|+++| | +|||+.+.+....++
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaD--r~~G~r~~~~~g~~~~~ 99 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGD--KVLGTKRVIMLGAIVLA 99 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHH
Confidence 46777788899999999999987777655 665443 23332222333555678999999 9 599999988877776
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
+.++++++... . .+ ++++ ++..+ .+.+..
T Consensus 100 ig~~l~~~~~~--~----------------------------------------~~----~l~~--~~~l~---gig~g~ 128 (500)
T PRK09584 100 IGYALVAWSGH--D----------------------------------------AG----IVYM--GMATI---AVGNGL 128 (500)
T ss_pred HHHHHHHHhcc--c----------------------------------------HH----HHHH--HHHHH---HHhhhc
Confidence 66555543210 0 11 1111 12221 222233
Q ss_pred HHHHHHHHHHhhCCcchhh--HHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGS--RLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQ 247 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eak--R~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~ 247 (385)
.....-++++|.+++++++ +.+++...+.++|..+||.+++++. ..|.+ .+.+.++...++.+
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVV 195 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 3344557899999876654 4799999999999999999999987 45654 55555554444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=87.92 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCC
Q 016656 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKED 144 (385)
Q Consensus 65 ~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (385)
++.........+..|+.|+++| |+|||+++.+....+++..++..+......
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d--~~grr~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 126 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSD--RFGRKKSLLIIALLFVIGAILMGLAAFALS-------------------------- 126 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhh--hhhhHHHHHHHHHHHHHHHHHHHHhccccc--------------------------
Confidence 4444445566899999999999 999999998777776555554433211000
Q ss_pred cchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHH
Q 016656 145 PKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA 224 (385)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~ 224 (385)
.| .+. +.|.+ ..+-.........++++|.++++++.+..++..++.++|.++|+.++
T Consensus 127 --------------~~-----~~~-~~r~l---~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 127 --------------VE-----MLI-VGRVL---LGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred --------------hH-----HHH-HHHHH---HHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11 221 12333 22223334457888999999999999999999999999999999997
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.9e-06 Score=83.43 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=33.8
Q ss_pred HHHHHHHhhC-CcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 188 STWARVIDVM-DSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 188 lfWa~~~di~-~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
-+++..+|++ +++|+.+..+.-..++++|.++++.++..+.
T Consensus 129 p~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~ 170 (444)
T PRK09669 129 PYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV 170 (444)
T ss_pred hHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999998 6788999999999999999888887665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-07 Score=91.89 Aligned_cols=270 Identities=18% Similarity=0.209 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc----cCc----cchh--HHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS----LGL----SKLP--GLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALV 97 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s----~Ga----e~lp--~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~ 97 (385)
...++....|+..+++++..+........ .+- ++-. ..+. .....+++-+|++|.++| |+||+..+.
T Consensus 19 ~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD--~~grk~~L~ 96 (463)
T KOG2816|consen 19 SMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSD--RYGRKVVLL 96 (463)
T ss_pred hhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhh--hhhhhhhHH
Confidence 34455555566666666655444433333 222 1111 2221 223466899999999999 999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHH
Q 016656 98 LIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLW 177 (385)
Q Consensus 98 ~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw 177 (385)
+...+..+.-+...+. .| |.++ +.+
T Consensus 97 ~~~~~~~l~~~~~~~~---------------------------------------------~~----~~~~----~~~-- 121 (463)
T KOG2816|consen 97 LPLFGTILPALCLLFQ---------------------------------------------GY----WFFL----LLG-- 121 (463)
T ss_pred HHHHHHHHhHHHHHHH---------------------------------------------HH----HHhh----hcc--
Confidence 8777653332222221 11 2221 110
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH-hHH-HHHHHHHHHHHHHHHHHHHhhh
Q 016656 178 VALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL-GPY-LLLFAACLMELAAQSSKGIYKE 255 (385)
Q Consensus 178 ~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~-g~~-lll~aa~l~~l~~~~~~~l~~~ 255 (385)
..+.-....+.--++++|+++.|+|...||++.+...+|..+||.+++.+.+. |-. .+.++++..+++....+...++
T Consensus 122 l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 122 LSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred cccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 01112335556678999999999999999999999999999999999998854 444 7888887777776665554332
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHH-----
Q 016656 256 IPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVV----- 330 (385)
Q Consensus 256 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~----- 330 (385)
.+++..+.+.+.++. . +.+ ..+....+..+..+....+|-.+.++...++....
T Consensus 202 ------sl~~~~~~~~~~~~~---------~---~~~---~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~ 260 (463)
T KOG2816|consen 202 ------SLQEKERSDATLREL---------T---PGS---LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGA 260 (463)
T ss_pred ------ccCcccccccccccc---------C---CCc---ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCc
Confidence 122111110000000 0 000 01111123344444433444444444444332211
Q ss_pred H-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 331 S-SFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 331 ~-~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
. ++.+|....+.| |+++ ++.+.++.++...+.|++..+.+.+.+|.
T Consensus 261 ~~~~~~yl~~~f~w----~~~~----~s~~~~~~~~~~~i~~l~~~~~l~~~l~~ 307 (463)
T KOG2816|consen 261 SDVLLLYLKAKFGW----NKKE----FSDLLSLVSILGIISQLLLLPLLSSILGE 307 (463)
T ss_pred eeEEEEEEeeecCc----CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 223333333443 2222 56666777788888888887777777663
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00016 Score=75.22 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhh-ccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAI-SLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~-s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
.+....+.+++-....++.-|+...+.. +.|-+ ++.++...-.....+....+|+++| |+|.|+++.+.....++
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D--r~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP--IFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHHHH
Confidence 3444445555556666666666555543 34433 3333222222233555577799999 99999999888887766
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+..++..+...+ + .| .+. +.|.+ .+.....
T Consensus 113 ~~~~~~~a~~~~~~------------------------------------s--~~-----~ll-i~r~l----~Gigg~~ 144 (462)
T PRK15034 113 PCVWLGIAVQNPNT------------------------------------P--FG-----IFI-VIALL----CGFAGAN 144 (462)
T ss_pred HHHHHHHHHcccCC------------------------------------C--HH-----HHH-HHHHH----HHHHHHh
Confidence 66655553220000 0 12 221 11222 2223445
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAG 226 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~ 226 (385)
.+.....+++.++++|+.+..|+...++++|..+++.++..
T Consensus 145 f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 145 FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56677789999999999999999988888888776655543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-06 Score=90.87 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhccc
Q 016656 72 ILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQ 151 (385)
Q Consensus 72 ~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (385)
...++..++.|+++| |+|||+++.+.....+++.+++++...
T Consensus 606 l~~i~G~il~g~L~D--r~GRr~~l~~~~~lsai~~ll~~~~~s------------------------------------ 647 (742)
T TIGR01299 606 LAVLPGNIVSALLMD--KIGRLRMLAGSMVLSCISCFFLSFGNS------------------------------------ 647 (742)
T ss_pred HHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHHcc------------------------------------
Confidence 445778889999999 999999987777666666555543211
Q ss_pred CCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHh
Q 016656 152 GSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLG 231 (385)
Q Consensus 152 ~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g 231 (385)
.+ ++.+ +.+....+........+++++|++|++++.+.+|+.++++.+|.++||.+++.+...+
T Consensus 648 -------~~----~ll~-----~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~ 711 (742)
T TIGR01299 648 -------ES----AMIA-----LLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT 711 (742)
T ss_pred -------HH----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01 0111 1111233334455678899999999999999999999999999999999998876555
Q ss_pred HH-HHHHHHHHHHHHHHHHHH
Q 016656 232 PY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 232 ~~-lll~aa~l~~l~~~~~~~ 251 (385)
.. ++++.++++++++++...
T Consensus 712 ~~~pf~i~a~~lll~~ll~~~ 732 (742)
T TIGR01299 712 KAAPILFASAALACGGLLALK 732 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 44 677666666555555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-05 Score=77.41 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hHHHHHH-HHHHHHHHHHHHHhhCCCCCC-chhHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PGLFVGS-LILTLIAAPVSTLIFSLPNLS-KAKALVLIHRF 102 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~l~~~~-~~~~~l~~p~y~~L~~~~r~~-r~~vl~~~~~~ 102 (385)
..+...+|+-...++..-|..+....+.|-+.. -++..+. ....++..|+.|.++| |.. ++|++.+....
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aD--r~~~~~~~l~~~~l~ 77 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIAD--RFGSAKRILALLSLL 77 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhHHHHHHHHHHH
Confidence 445667777888888888988877777775433 2444554 4455888999999999 874 56666554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.3e-06 Score=87.29 Aligned_cols=163 Identities=12% Similarity=0.066 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCC-CCchhHHHHHHHH
Q 016656 27 TSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVLIHRF 102 (385)
Q Consensus 27 ~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r-~~r~~vl~~~~~~ 102 (385)
.+.++..+..-++--++||..++.......+ .|.++ ..++..+-..+..+..++.|+++| | +||||++.+....
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laD--r~~G~r~~~~~g~~~ 90 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGD--HLLGTKRTIVLGAIV 90 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhh--hccchHHHHHHHHHH
Confidence 3556666777788999999999888777665 56543 334443334455777789999999 9 9999999999988
Q ss_pred HHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHH
Q 016656 103 FSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLN 182 (385)
Q Consensus 103 f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~ 182 (385)
+++..+..++.... ... +++ ++.. ..+-+
T Consensus 91 ~~~g~~~~~~~~~~------------------------------------------~~l----l~~--~~~l---~~ig~ 119 (489)
T PRK10207 91 LAIGYFMTGMSLLK------------------------------------------PDL----IFI--ALGT---IAVGN 119 (489)
T ss_pred HHHHHHHHHHhccc------------------------------------------hhH----HHH--HHHH---HHhcc
Confidence 87777666653210 000 111 1222 12212
Q ss_pred HHHHHHHHHHHHhhCCcchh--hHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 183 LITISSTWARVIDVMDSESG--SRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 183 ~~~~slfWa~~~di~~~~ea--kR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
.......-++++|.++++++ .+.|+..+.+.++|..+||.+++++. .+|-+ .+++.++.+
T Consensus 120 g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 120 GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 22223334789999988865 44899999999999999999999998 55643 455554433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00013 Score=75.39 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC-cchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 174 FFLWVALLNLITISSTWARVIDVMD-SESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 174 fyiw~~~~~~~~~slfWa~~~di~~-~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.|+...+.-.....=+|+...++++ ++||.+..+.-..++++|..+++.++..+.
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv 170 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV 170 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333323333478889999988 889999999999999999999888765544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-05 Score=86.35 Aligned_cols=151 Identities=9% Similarity=-0.011 Sum_probs=98.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 24 ~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
+..+..++...+..++......++-++.+.+..+.|.. ...++..+.+..+++..++.|+++| |+|||+++.+...
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsD--R~GRR~~lii~li 240 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLAD--KLGRKQCLLICLS 240 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHH
Confidence 33343444444444444444444555555554455543 3334444556666999999999999 9999999988777
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++..++.++... .| ++++ .|++ ..+.
T Consensus 241 l~~i~~ll~afa~s-------------------------------------------~~----~llv--~R~l---~G~g 268 (742)
T TIGR01299 241 VNGFFAFFSSFVQG-------------------------------------------YG----FFLF--CRLL---SGFG 268 (742)
T ss_pred HHHHHHHHHHHHhh-------------------------------------------HH----HHHH--HHHH---HHHH
Confidence 76655554443211 12 1221 2333 2333
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
..........+++|.++++++.+.++++.+++.+|.++++.++..+.
T Consensus 269 ~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999999998876654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=65.20 Aligned_cols=123 Identities=23% Similarity=0.232 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhccc
Q 016656 72 ILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQ 151 (385)
Q Consensus 72 ~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (385)
..+++..|+.+++.| |++||+.+.......++..+.+.+...
T Consensus 9 ~~~~~~~~~~g~~~d--~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 50 (141)
T TIGR00880 9 LGQLIYSPLSGLLTD--RFGRKPVLLVGLFIFVLSTAMFALSSN------------------------------------ 50 (141)
T ss_pred hHHHHHHhhHHHHHh--hcchhHHHHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence 345788899999999 999999987766665555444332100
Q ss_pred CCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-H
Q 016656 152 GSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-L 230 (385)
Q Consensus 152 ~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~ 230 (385)
.| ... +..+.............++++.|.++++++.+.++....+.++|..+|+.+++.+.. .
T Consensus 51 -------~~-----~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 114 (141)
T TIGR00880 51 -------IT-----VLI----IARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL 114 (141)
T ss_pred -------HH-----HHH----HHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc
Confidence 12 111 122222333344556889999999999999999999999999999999999988763 3
Q ss_pred hHH-HHHHHHHHHHHHHHH
Q 016656 231 GPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 231 g~~-lll~aa~l~~l~~~~ 248 (385)
+.. .+...+++..++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 115 GWRAPFLFLAILALAAFIL 133 (141)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 432 444444443334333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=85.63 Aligned_cols=229 Identities=16% Similarity=0.185 Sum_probs=135.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCC
Q 016656 65 GLFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKE 143 (385)
Q Consensus 65 ~l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (385)
++...++.+. .+++|+.|.|.| |++|++++.+......+.-++-++...
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLad--ryNR~~v~~vG~~iW~~Av~~~~fs~~---------------------------- 120 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLAD--RYNRKRVIAVGIFIWTLAVFASGFSNH---------------------------- 120 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh--hcCcceEEeeHHHHHHHHHHHHHHHHH----------------------------
Confidence 4444444444 889999999999 999999988877777655555555421
Q ss_pred CcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHH
Q 016656 144 DPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS-STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSL 222 (385)
Q Consensus 144 ~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s-lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~ 222 (385)
-| .+. +-|.| .+......+ +.-++++|.|+.+++.|.|+++..+..+|.++|..
T Consensus 121 ---------------Fw-----q~~-l~R~~----vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~v 175 (493)
T KOG1330|consen 121 ---------------FW-----QVL-LCRGF----VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYV 175 (493)
T ss_pred ---------------HH-----HHH-HHHHH----hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEE
Confidence 23 332 23444 344444444 89999999999999999999999999999999988
Q ss_pred HHHHHHhH-hHH--HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 016656 223 FAAGMAFL-GPY--LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKP 299 (385)
Q Consensus 223 l~~~la~~-g~~--lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 299 (385)
.++..+.. +.| -+.+++++.++.+++.+...+. || |+. . |+. .+ +.+..++
T Consensus 176 vgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e----P~-----rga--~-----~~~-----~~-----~~~~~~~ 229 (493)
T KOG1330|consen 176 VGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE----PE-----RGA--R-----DEV-----DG-----ENKMVKP 229 (493)
T ss_pred eeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC----cc-----ccc--c-----ccc-----cc-----CCcCCCC
Confidence 88877743 223 5667776666665554444232 11 111 0 000 00 0000122
Q ss_pred cccchHHHHHHHHhchh-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 016656 300 HLWAILDGLRLIFSSNY-LLSVSLFLWLSAVVSS-------FFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQ 371 (385)
Q Consensus 300 ~~~~~~~~l~~i~~s~y-L~~i~~~v~l~~~~~~-------l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~q 371 (385)
.++.++-++...+.|- ......+.....++.+ ..++.. ... ....+.+..+|.+....|++-.++-
T Consensus 230 -~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~-~~~----~~~~~~~~ifg~vt~~~G~lGvl~G 303 (493)
T KOG1330|consen 230 -FTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSY-ELI----GFDHNATLIFGGVTCAGGSLGVLFG 303 (493)
T ss_pred -ccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHH-HHh----CCccccchhhhhHHHhhchhhheeh
Confidence 2456666777766333 2222222222222222 122111 111 1344567778888888888887776
Q ss_pred HHhHHHHHH
Q 016656 372 LTLTGTSFL 380 (385)
Q Consensus 372 lf~t~~l~r 380 (385)
..+.-++.+
T Consensus 304 giisd~~~~ 312 (493)
T KOG1330|consen 304 GIISDKLSR 312 (493)
T ss_pred HHHHHHHHH
Confidence 666555444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.9e-05 Score=75.89 Aligned_cols=168 Identities=17% Similarity=0.064 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
........++....++......+.+..+.|.+ +...+.......+++..++.|+++| |++|++.+.......++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~~~~~~~~~ 299 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMD--RLRPRRVVLLIYAGILASL 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHH
Confidence 33333444444444544444344444444432 2233333444556888899999999 9999998876544433333
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++.+ . .. .| +.+ ++.+...........
T Consensus 300 ~~~~~--~-~~----------------------------------------~~----~~~-----~~~~~~g~~~~~~~~ 327 (406)
T PRK11551 300 AALAA--A-PS----------------------------------------FA----GML-----LAGFAAGLFVVGGQS 327 (406)
T ss_pred HHHHh--c-Cc----------------------------------------HH----HHH-----HHHHHHHHHHHhHHH
Confidence 22211 0 00 12 011 111111222233455
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH-hH-H-HHHHHHHHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL-GP-Y-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~-g~-~-lll~aa~l~~l~~~~~~~ 251 (385)
..++++.|.++++++.+..|+....+.+|..+||.+++.+... +. . .+...+.+.+++..+...
T Consensus 328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999988633 22 2 344444444444444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=72.68 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccC
Q 016656 73 LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQG 152 (385)
Q Consensus 73 ~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (385)
..++..+..+++.| |++|++.+.......++.++++.+.. +
T Consensus 261 ~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------------------- 301 (399)
T PRK05122 261 AFVGARLLFGNLIN--RLGGLRVAIVSLLVEILGLLLLWLAP--S----------------------------------- 301 (399)
T ss_pred HHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHhc--c-----------------------------------
Confidence 34666788999999 99999988776666555544443310 0
Q ss_pred CCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh
Q 016656 153 STANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG 231 (385)
Q Consensus 153 ~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g 231 (385)
.| ... +..+................+.|.++++++.|.+|+.+...++|..+||.+.+.+. ..|
T Consensus 302 ------~~-----~~~----~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 366 (399)
T PRK05122 302 ------PW-----MAL----IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG 366 (399)
T ss_pred ------HH-----HHH----HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12 111 11111121122223344466778999999999999999999999999888888876 456
Q ss_pred HH-HHHHHHHHHHHHHHHHHHH
Q 016656 232 PY-LLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 232 ~~-lll~aa~l~~l~~~~~~~l 252 (385)
.. .+.+.+++..++..+.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 367 YPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 54 5555555555555554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00014 Score=74.36 Aligned_cols=122 Identities=12% Similarity=-0.003 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCC
Q 016656 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKED 144 (385)
Q Consensus 65 ~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (385)
++........++..++.|+++| |+||||++.+....+++..++.++........ .
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~d--r~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~----------------------~- 113 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSN--RFGRRDSLKIAAVLFFISALGSAWPEFGFTSI----------------------G- 113 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHhhccccccc----------------------c-
Confidence 3333445566899999999999 99999999988888776666555421110000 0
Q ss_pred cchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHH
Q 016656 145 PKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA 224 (385)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~ 224 (385)
++.+. .+ +.+. +.|++ ..+.........-++++|.++++|+.+..++.+.+..+|.++++.++
T Consensus 114 ------~~~~~---~~----~~l~-~~R~l---~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~ 176 (479)
T PRK10077 114 ------PDNTG---YV----PEFV-IYRII---GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVN 176 (479)
T ss_pred ------ccchh---HH----HHHH-HHHHH---HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 01 1111 23444 23334555667888899999999999999999999999999998877
Q ss_pred HHHH
Q 016656 225 AGMA 228 (385)
Q Consensus 225 ~~la 228 (385)
..+.
T Consensus 177 ~~~~ 180 (479)
T PRK10077 177 YFIA 180 (479)
T ss_pred HHHh
Confidence 6654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-05 Score=75.17 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcc
Q 016656 71 LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVD 150 (385)
Q Consensus 71 ~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (385)
....++..++.|+++| |++||+.+.+.....++.++++.+.....
T Consensus 250 ~~~~~~~~~~~g~l~d--r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 294 (377)
T TIGR00890 250 SIFNGGGRPFLGALSD--KIGRQKTMSIVFGISAVGMAAMLFIPMLN--------------------------------- 294 (377)
T ss_pred HHHHHHHHHHHHHHHH--HHhhhhhhhHHHHHHHHHHHHHHHcccch---------------------------------
Confidence 4455788899999999 99999998776666555544433211000
Q ss_pred cCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-h
Q 016656 151 QGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-F 229 (385)
Q Consensus 151 ~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~ 229 (385)
.+ .+. ..............+.+..+++|.++++++.+.+|+.....++|..+||.+++.+. .
T Consensus 295 --------~~-----~~~----~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 295 --------DV-----LFL----ATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred --------hH-----HHH----HHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 111 00011111122234567788999999999999999999999999999999999876 4
Q ss_pred HhHH-HHHHHHHHHHH
Q 016656 230 LGPY-LLLFAACLMEL 244 (385)
Q Consensus 230 ~g~~-lll~aa~l~~l 244 (385)
.|.. .+.+.+++..+
T Consensus 358 ~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 358 IGFEYTFIVTGAFALT 373 (377)
T ss_pred hchhhHHHHHHHHHHH
Confidence 5543 55555544433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00033 Score=71.49 Aligned_cols=77 Identities=5% Similarity=-0.046 Sum_probs=41.8
Q ss_pred chHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 016656 303 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 382 (385)
Q Consensus 303 ~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrl 382 (385)
+..+.++.++++|.+...++..+++............-+.++.+.++++ .+.+....+.+..++...+.+++.+|+
T Consensus 216 ~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~r~ 291 (448)
T PRK09848 216 SLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL----FTVLVLVQNLVGTVASAPLVPGMVARI 291 (448)
T ss_pred CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677789999999998877766665443222221111111222222222 333333343444444455568898888
Q ss_pred C
Q 016656 383 G 383 (385)
Q Consensus 383 G 383 (385)
|
T Consensus 292 g 292 (448)
T PRK09848 292 G 292 (448)
T ss_pred C
Confidence 7
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0002 Score=72.15 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HH-HHHHHHHHHHHHH
Q 016656 183 LITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LL-LFAACLMELAAQS 248 (385)
Q Consensus 183 ~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-ll-l~aa~l~~l~~~~ 248 (385)
.......++++.|..+++.+.|.+|+.++..++|..+||.++|.+. ..|.. .+ ..+++.+.+++..
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 3344567889999999999999999999999999999999999988 45653 33 3444444444444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0017 Score=67.86 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=107.6
Q ss_pred HHHHHHHHhhhchhhhhhc-------cC--ccchhHHHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 016656 39 FILSAYFVVLPLRDEGAIS-------LG--LSKLPGLFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (385)
Q Consensus 39 lil~~y~ilrpv~d~l~~s-------~G--ae~lp~l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~l 108 (385)
+.+|-|+.++.+|+.+-.. .| .+++.+.....+..+ .+...+.|++.| |+|-||++.+.....++.-+
T Consensus 30 ~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaD--rlG~K~vL~l~~l~Wsl~t~ 107 (511)
T TIGR00806 30 LYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTD--YLRYKPVLVLQALSFVCVWL 107 (511)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHHHH
Confidence 4556667777777766443 23 233222222223333 556667899999 99999999988888777766
Q ss_pred HHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 016656 109 VFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188 (385)
Q Consensus 109 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~sl 188 (385)
+.++.-... . +. +.|++| ++...... .
T Consensus 108 L~~fa~Sl~------------------------------------------~-----L~--i~R~ll---GvaEA~~~-A 134 (511)
T TIGR00806 108 LLLLGTSVW------------------------------------------H-----MQ--LMEVFY---SVTMAARI-A 134 (511)
T ss_pred HHHHHHHHH------------------------------------------H-----HH--HHHHHH---HHHHHHHH-H
Confidence 666643311 1 11 236665 33334445 8
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhH---H-HHHHHHHHHHHHHHHHHHH
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGP---Y-LLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~---~-lll~aa~l~~l~~~~~~~l 252 (385)
...++...++++|+.|..++..+|..+|.++|+.+++++..+|- . +..++.....++..+..+|
T Consensus 135 ~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 135 YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999999999999999999998665552 2 5566666666666665554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00068 Score=69.22 Aligned_cols=227 Identities=12% Similarity=0.130 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh----chhhhhhccCccchh-HHHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLP----LRDEGAISLGLSKLP-GLFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrp----v~d~l~~s~Gae~lp-~l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
-...++.+|+--.+||+.|- .++++..+.|-+.-. +.....+.++ -+.=-+.|.++| |.+.|+++...+...
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD--r~npr~fm~~gLils 104 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD--RSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCCceeehHHHHHH
Confidence 34567778888888888874 345555554444432 2222222222 233334577899 999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++..++|++..+. | ++. ++++.-+.+-.
T Consensus 105 ai~nil~Gfs~s~-------------------------------------------~-----~~~----~l~~lng~fQg 132 (448)
T COG2271 105 AIVNILFGFSPSL-------------------------------------------F-----LFA----VLWVLNGWFQG 132 (448)
T ss_pred HHHHHHHhhhhHH-------------------------------------------H-----HHH----HHHHHHHHHhc
Confidence 9999998885532 2 111 22222222222
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHH--HHHHh-HhHH-HHHHHHHHHHHHHHHHHHHhhhcCCC
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA--AGMAF-LGPY-LLLFAACLMELAAQSSKGIYKEIPRR 259 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~--~~la~-~g~~-lll~aa~l~~l~~~~~~~l~~~~~~~ 259 (385)
.--+-.-..+..-++.+||.+..++-+..-|+|+-+-|.++ +++.. .+-. -+++++++..+.+++.+.+.|--++
T Consensus 133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq- 211 (448)
T COG2271 133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ- 211 (448)
T ss_pred CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc-
Confidence 22234445678889999999999999999999999988887 55552 2333 6777776665555555554332221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHH-HHHHhchhHHHHHHHHHHH
Q 016656 260 PEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGL-RLIFSSNYLLSVSLFLWLS 327 (385)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l-~~i~~s~yL~~i~~~v~l~ 327 (385)
.+.|||.++-..|+.+. + + +++.....+-++-+ ++++++|++..+|+..++-
T Consensus 212 s~GLP~ie~~~~d~~e~---------~-----~--~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfv 264 (448)
T COG2271 212 SEGLPPIEEYRGDPLEI---------Y-----E--EEKENEGLTAWQIFVKYVLKNKLIWLLALANVFV 264 (448)
T ss_pred ccCCCCHHHhhcCchhh---------h-----h--hhccCCCccHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 23355544332111000 0 0 01111114445544 8999999999998876553
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-05 Score=78.51 Aligned_cols=165 Identities=17% Similarity=0.207 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC-cchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh------HH--HHHHHHHHHH
Q 016656 174 FFLWVALLNLITISSTWARVIDVMD-SESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG------PY--LLLFAACLME 243 (385)
Q Consensus 174 fyiw~~~~~~~~~slfWa~~~di~~-~~eakR~fgligag~~lG~I~G~~l~~~la-~~g------~~--lll~aa~l~~ 243 (385)
.|+..++...+...-+++..+|+++ ++||.|+.+.-..+..+|.++.+.+...+. ..+ .. ...+.+++..
T Consensus 109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~ 188 (428)
T PF13347_consen 109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL 188 (428)
T ss_pred HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence 4433354444455578899999997 579999999999999999976666655554 332 11 2222222222
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHH
Q 016656 244 LAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLF 323 (385)
Q Consensus 244 l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~ 323 (385)
++........|+ + .+ + . +.++.+.+..+.++.++++|....+++.
T Consensus 189 v~~~i~~~~~ke--~---------~~--~---~-------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~ 233 (428)
T PF13347_consen 189 VFFLITFFFVKE--R---------SV--E---V-------------------TEQEKKISLRDSLRSLFRNRPFRILLLA 233 (428)
T ss_pred HHhhhhhheeee--c---------cc--c---c-------------------cccccccccccchhhhcccchHHHHHHH
Confidence 222222221111 0 00 0 0 0111123677889999999998888777
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 324 LWLSAVV-----SSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 324 v~l~~~~-----~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.++..+. ....||..... .++ + ..+.+.....+.+++.-.+ .+++.||+|
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl-----~~~-~---~~~~~~~~~~~~~~v~~~~-~~~l~~r~g 288 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVL-----GNE-G---LISIFMLIFFVASIVGSPL-WGRLSKRFG 288 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHh-----cCc-h---hhHHHHHHHHHHHHHHHHH-HHHHHHHcc
Confidence 7776443 23334333222 222 2 2444444555555555444 589999987
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.6e-05 Score=78.23 Aligned_cols=170 Identities=9% Similarity=0.022 Sum_probs=106.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHHHHHH-HHHHHHHHHHHhhCCCCC-CchhHHHHHHH
Q 016656 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFVGSLI-LTLIAAPVSTLIFSLPNL-SKAKALVLIHR 101 (385)
Q Consensus 26 E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~~~~~-~~~l~~p~y~~L~~~~r~-~r~~vl~~~~~ 101 (385)
.-+.+..++.+.++--++||..+...+....+ .|-+.- .....+.+. +..+..++.|+++| |+ ||||.+.+...
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaD--RilGrrr~iliG~i 84 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLAD--KVLGNRMAVMLGAL 84 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCcHHHHHHHHH
Confidence 44566667777788888999999888887766 465443 233344444 44677779999999 99 99998876666
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
..++..++++... .. .+ +.++++ .+. .+-
T Consensus 85 l~~lg~lll~~~~--~~----------------------------------------~~----~~~l~l--~li---~iG 113 (493)
T PRK15462 85 LMAIGHVVLGASE--IH----------------------------------------PS----FLYLSL--AII---VCG 113 (493)
T ss_pred HHHHHHHHHHHhh--cc----------------------------------------hh----HHHHHH--HHH---HHh
Confidence 5554444332110 00 01 122211 111 011
Q ss_pred HHHHHHHHHHHHHhhCCcchh--hHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESG--SRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~ea--kR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
+.......-++++|.+++++. .+.|++...++++|+.+||.+++++. ..|.. .+.++++.+.+++..
T Consensus 114 ~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 114 YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 112223345679999998754 44699999999999999999999987 45643 555555444444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00011 Score=75.60 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP 232 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~ 232 (385)
.+..+++.|.++++++.+.+|+....+++|..+||.+++.+. ..|.
T Consensus 385 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~ 431 (496)
T PRK03893 385 GLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431 (496)
T ss_pred hhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence 356678999999999999999999999999999999999987 4554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0013 Score=68.43 Aligned_cols=151 Identities=12% Similarity=-0.025 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCcc-ch----hHHHHH-HHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLS-KL----PGLFVG-SLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae-~l----p~l~~~-~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
.++...+..|++......+-.+.+.+.-. .+.+ .+ ..+..+ ....+.+..++.|+++| |+|||+++.+...
T Consensus 17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d--~~Grr~~~~~~~~ 94 (502)
T TIGR00887 17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLAD--KLGRKRVYGMELI 94 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHH
Confidence 34444444555555555555544443322 1111 11 123333 34456888999999999 9999999987777
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++..++.++...... ..+ .| ++++ .|.+ ....
T Consensus 95 ~~~v~~~~~~~~~~~~~-----------------------------------~~~--~~----~~~~--~r~l---~G~~ 128 (502)
T TIGR00887 95 IMIIATVASGLSPGSSP-----------------------------------KSV--MA----TLCF--WRFW---LGVG 128 (502)
T ss_pred HHHHHHHHHHHccCccc-----------------------------------chH--HH----HHHH--HHHH---HHHH
Confidence 66665554443211000 000 11 1222 2333 2332
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
..........+++|.++++++.+..++...+..+|.++|+.++..+
T Consensus 129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567789999999999999999999999999999999887765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.8e-05 Score=74.23 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
+++......++....++...+.-+.+..+ .|.+. ...+.........+..++.|+++| |++||+.+........+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD--RIGRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--HhchHHHHHHHHHHHHH
Confidence 35556666666666777666666666644 44432 233333444556888899999999 99999987644333322
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+.+........ ..| ... +............
T Consensus 298 ~~~~~~~~~~~~~---------------------------------------~~~-----~~~----~~~~~~g~~~~~~ 329 (394)
T TIGR00883 298 LAVPLLMALLDSG---------------------------------------SFT-----LFF----FLVLGLALIGGMY 329 (394)
T ss_pred HHHHHHHHHhcCC---------------------------------------chH-----HHH----HHHHHHHHHHHHH
Confidence 2111111111000 022 111 1222223333345
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHH-HHHHhHHHhhhHHHHHHHH-hHh
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFI-GAGATLGQLFGSLFAAGMA-FLG 231 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgli-gag~~lG~I~G~~l~~~la-~~g 231 (385)
....++.++|.++++++.+.+++. +.+..+|..+||.+++.+. ..|
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 567889999999999999999985 5666788989999999887 445
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-05 Score=71.49 Aligned_cols=167 Identities=19% Similarity=0.158 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhcc-Cccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchh-HHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAISL-GLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAK-ALVLIHRFF 103 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~-Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~-vl~~~~~~f 103 (385)
+++....+..++...++......-+....+. |.+.. ............+..++.++++| |++||+ ++.......
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~ 252 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD--RLGRRRLLLLIGLLLA 252 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHH
Confidence 5555666666777777777777777666663 44333 23343445566889999999999 999999 776666655
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
.+..+.+..... .| ... +.+........
T Consensus 253 ~i~~~~~~~~~~-------------------------------------------~~-----~~~----~~~~~~g~~~~ 280 (352)
T cd06174 253 ALGLLLLALAPS-------------------------------------------LA-----LLL----VALLLLGFGLG 280 (352)
T ss_pred HHHHHHHHHhcc-------------------------------------------HH-----HHH----HHHHHHHHHHh
Confidence 555444433111 11 111 22222344445
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
......+++++|..+++++.+.+|+.+...++|..+|+.+.+.+. ..+.. .+.+.+++..++...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999999999999999999887 44543 555555555444443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00025 Score=70.49 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhhchhhhhhcc-Cc-cchh---HHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHH
Q 016656 38 FFILSAYFVVLPLRDEGAISL-GL-SKLP---GLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFF 111 (385)
Q Consensus 38 Flil~~y~ilrpv~d~l~~s~-Ga-e~lp---~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~ 111 (385)
++.........|.-+....+. +. .... ...... ...+++..+..|+++| |++||+++.......++..+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~d--r~g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGD--RIGPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchhHHHHHHHHHHHHHHHH
Confidence 333444555556555555542 22 2222 222222 2344778889999999 99999988766554433332222
Q ss_pred HHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016656 112 LLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWA 191 (385)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa 191 (385)
+. .. .|. .++ .+++ .............+
T Consensus 307 ~~---~~----------------------------------------~~~----~~~--~~~~---~g~~~~~~~~~~~~ 334 (408)
T PRK09874 307 FV---QT----------------------------------------PLQ----LGI--LRFL---LGAADGALLPAVQT 334 (408)
T ss_pred Hh---cc----------------------------------------HHH----HHH--HHHH---HHhhhHhhHHHHHH
Confidence 11 00 120 111 1111 12223334456667
Q ss_pred HHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHH
Q 016656 192 RVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 192 ~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~ 251 (385)
.+.|..+++++.|.+++.....++|..+||.+++.+. ..|.. .+.+.+++.++++...+.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999887 44654 666666665555554433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.3e-05 Score=79.25 Aligned_cols=190 Identities=17% Similarity=0.168 Sum_probs=124.1
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCC
Q 016656 64 PGLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAK 142 (385)
Q Consensus 64 p~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (385)
.++..++.+ ++++++|+.|.+.| |.|+|--+.+-+.+....-++|++.-+
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~--~iGy~ipm~~Gl~vmf~sTilFafg~s--------------------------- 158 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLID--RIGYKIPMVAGLFVMFLSTILFAFGNS--------------------------- 158 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHH--HhccccHHHHHHHHHHHHHHHHHHcch---------------------------
Confidence 477778866 55999999999999 999998877666666556666666322
Q ss_pred CCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhCCcch-hhHHHHHHHHHHhHHHhhh
Q 016656 143 EDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS-STWARVIDVMDSES-GSRLFGFIGAGATLGQLFG 220 (385)
Q Consensus 143 ~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s-lfWa~~~di~~~~e-akR~fgligag~~lG~I~G 220 (385)
.|+ ++ ++|.. .+.+..... .=-+.++|.++.|. |.+..|.+=++.++|.++|
T Consensus 159 ----------------y~~----l~--vAR~L----QgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvg 212 (464)
T KOG3764|consen 159 ----------------YPM----LF--VARSL----QGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVG 212 (464)
T ss_pred ----------------hHH----HH--HHHHH----hhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceec
Confidence 221 22 34664 555443333 33467888887665 6899999999999999999
Q ss_pred HHHHHHHHhH-hHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 016656 221 SLFAAGMAFL-GPY-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVK 298 (385)
Q Consensus 221 ~~l~~~la~~-g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 298 (385)
|..||.+-++ |.. |+++-++++++...+-.++.+ +++ . ++ |+.+ +.+
T Consensus 213 PpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~--p~~---------~--~~----~~~~--------------~~~ 261 (464)
T KOG3764|consen 213 PPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE--PTE---------M--DP----DSTE--------------QGT 261 (464)
T ss_pred CCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC--ccc---------c--Cc----cccc--------------cCc
Confidence 9999999854 654 777777666566555334311 110 1 00 0000 011
Q ss_pred CcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016656 299 PHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVS 347 (385)
Q Consensus 299 ~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~ 347 (385)
+ +.-+++.||+..++..+...++...+.|=+..-...+.+.
T Consensus 262 ~--------~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~ 302 (464)
T KOG3764|consen 262 P--------MWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF 302 (464)
T ss_pred c--------HHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc
Confidence 1 4458899999999998888888777766544443444443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00025 Score=68.74 Aligned_cols=173 Identities=17% Similarity=0.154 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHH-HHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI-HRFF 103 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~-~~~f 103 (385)
++++...+..++....+......-+.+..+ .|.+.. ..+........++..++.|+++| |++||+..... ....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 292 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD--LLLRRGKSLVFARKTA 292 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHhhcccchhHHHHHH
Confidence 345556666677777777666666665554 454332 33343445556888999999999 99999721111 1111
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
.+..++......... +. + . .| ... .. .....+..
T Consensus 293 ~~~~~~~~~~~~~~~--~~-~--------------------------------~-~~-----~~~----~~-~~~~~~~~ 326 (399)
T TIGR00893 293 IIAGLVLSLLMFATN--YV-N--------------------------------I-PY-----AAL----AL-VALGFFGL 326 (399)
T ss_pred HHHHHHHHHHHHHhc--cc-h--------------------------------h-HH-----HHH----HH-HHHHHhch
Confidence 111122222111110 00 0 0 11 111 11 11122223
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh-HH-HHHHHHHHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG-PY-LLLFAACLMELAAQS 248 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g-~~-lll~aa~l~~l~~~~ 248 (385)
......|++++|.++++++.+.+|+.+...++|..+||.+.+.+. ..| .. .+.+.+++..++...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 327 GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 356689999999999999999999999999999999999999886 445 33 444444444444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00035 Score=69.60 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccC
Q 016656 73 LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQG 152 (385)
Q Consensus 73 ~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (385)
...+..+..|+++| |++|||.+.......++.++++.+. .+
T Consensus 261 ~~~~~~~~~g~l~~--r~g~~~~~~~~~~~~~~~~~~~~~~--~~----------------------------------- 301 (392)
T PRK12382 261 AFVLMRVLFGWMPD--RFGGVKVAIVSLLVETVGLLLLWLA--PT----------------------------------- 301 (392)
T ss_pred HHHHHHHHHHHHHH--hcCCCeehHHHHHHHHHHHHHHHHc--cc-----------------------------------
Confidence 34677789999999 9999999877666655554443321 00
Q ss_pred CCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh
Q 016656 153 STANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG 231 (385)
Q Consensus 153 ~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g 231 (385)
.| +.++. .++ ...............+.|.++++++.+.+|+.+...++|..+||.+.+.+. ..|
T Consensus 302 ------~~----~~~~~--~~l---~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g 366 (392)
T PRK12382 302 ------AW----VALAG--AAL---TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG 366 (392)
T ss_pred ------HH----HHHHH--HHH---HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 01110 111 121122233456677889999999999999999999999999999999887 456
Q ss_pred HH-HHHHHHHHHHHHHHH
Q 016656 232 PY-LLLFAACLMELAAQS 248 (385)
Q Consensus 232 ~~-lll~aa~l~~l~~~~ 248 (385)
.. .+.+.+++.+++...
T Consensus 367 ~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 367 YPSVFLAGAISAVLGIIV 384 (392)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 53 555555555555544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=74.15 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCC
Q 016656 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKED 144 (385)
Q Consensus 65 ~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (385)
.+.........+..++.|+++| |++||+.+.+....+++.++++++.. +
T Consensus 266 ~~~~~~~~~~~~~~~~~g~l~d--r~g~~~~~~~~~~l~~~~~~l~~~~~--~--------------------------- 314 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPFIIN--RIGAKNALLLAGTIMAVRIIGSGFAT--G--------------------------- 314 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhCcchhhHHHHHHHHHHHHHHHhcc--c---------------------------
Confidence 3333334455788899999999 99999987766665555444433310 0
Q ss_pred cchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHH-HHHHHhHHHhhhHHH
Q 016656 145 PKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGF-IGAGATLGQLFGSLF 223 (385)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgl-igag~~lG~I~G~~l 223 (385)
.| +.+. .++...+...........+++|.++.+.+...++. .+.+.++|.++|+.+
T Consensus 315 --------------~~----~~~~-----~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~ 371 (420)
T PRK09528 315 --------------PL----EVSI-----LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL 371 (420)
T ss_pred --------------HH----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence 12 1111 11111222222334566889999999888888776 678899999999999
Q ss_pred HHHHH-hHhHH-HHHHHHHHH
Q 016656 224 AAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 224 ~~~la-~~g~~-lll~aa~l~ 242 (385)
.|++. ..|.. .++..+++.
T Consensus 372 ~G~l~~~~G~~~~f~~~~~~~ 392 (420)
T PRK09528 372 AGNLYDSIGFQGTYLILGGIV 392 (420)
T ss_pred HHHHHHhhCchHHHHHHHHHH
Confidence 99987 45643 444434333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00053 Score=67.15 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
.......++.|.++. +..+.+++.....++|..+||.+++.+. ..|.. .+.+.+++..++..+
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 334566788898865 5569999999999999999999999886 34544 555555555555544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=72.69 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhc
Q 016656 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAV 149 (385)
Q Consensus 70 ~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (385)
.....++..++.++++| |++||+.+.+.....++.++++++........ .+.
T Consensus 328 ~~~~~~~~~~~~g~l~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~---- 379 (481)
T TIGR00879 328 VGAVNFAFTFVAIFLVD--RFGRRPLLLIGAAGMAICLFVLGILGASFVTG----------------------SSK---- 379 (481)
T ss_pred HHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHhhcccCC----------------------ccc----
Confidence 34455788889999999 99999998877666666655555432211100 000
Q ss_pred ccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-
Q 016656 150 DQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA- 228 (385)
Q Consensus 150 ~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la- 228 (385)
...+ .... ...+....++.......+.+++|.++++++.+..|+.+...++|.++||.+.+.+.
T Consensus 380 -------~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 380 -------SSGN-----VAIV---FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred -------chhH-----HHHH---HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 1110 11112233344444577889999999999999999999999999999999888775
Q ss_pred hHhHH-HHHHHHHHHHHHHH
Q 016656 229 FLGPY-LLLFAACLMELAAQ 247 (385)
Q Consensus 229 ~~g~~-lll~aa~l~~l~~~ 247 (385)
..+.. .+.+.+++.++++.
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred hcCccceehhHHHHHHHHHH
Confidence 44542 33333333333333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00035 Score=70.23 Aligned_cols=47 Identities=19% Similarity=0.023 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP 232 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~ 232 (385)
..+.+.++.|.++++.+.+..|++...+.+|.++||.+++++. ..|.
T Consensus 339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~ 386 (426)
T PRK12307 339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL 386 (426)
T ss_pred hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence 3467888999999999999999999999999999999999987 4453
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00045 Score=70.53 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=81.9
Q ss_pred chhhhhhccCccch-hHH-HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhh
Q 016656 50 LRDEGAISLGLSKL-PGL-FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127 (385)
Q Consensus 50 v~d~l~~s~Gae~l-p~l-~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~ 127 (385)
..+.+..+.|.+.. ... ........++..++.++++| |++||+++.......++..++++.......
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d--r~g~r~~~i~~~~~~~v~~~~l~~~~~~~~--------- 361 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD--KFGRKPLQIIGALGMAIGMFSLGTAFYTQA--------- 361 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--HhcChHHHHHhHHHHHHHHHHHHHHHhcCc---------
Confidence 33444444554332 222 22333455788899999999 999999998877777777666654332110
Q ss_pred hhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHH
Q 016656 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFG 207 (385)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fg 207 (385)
.+. |...+ ..+| ...+........|.+++|.++++++.+..|
T Consensus 362 -------------------------------~~~---~~~~~--~~~~--~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 403 (479)
T PRK10077 362 -------------------------------PGI---VALLS--MLFY--VAAFAMSWGPVCWVLLSEIFPNAIRGKALA 403 (479)
T ss_pred -------------------------------ccH---HHHHH--HHHH--HHHHhccccchhHHHhHhhCChhHHHHHHH
Confidence 110 11110 1221 111222222478999999999999999999
Q ss_pred HHHHHHhHHHhhhHHHHHHHH
Q 016656 208 FIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 208 ligag~~lG~I~G~~l~~~la 228 (385)
+..+.+.+|.++|+.+...+.
T Consensus 404 ~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 404 IAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999977665544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0016 Score=65.24 Aligned_cols=219 Identities=18% Similarity=0.147 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhhhchhhhhhccCc--cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 016656 35 SCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFL 112 (385)
Q Consensus 35 l~~Flil~~y~ilrpv~d~l~~s~Ga--e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~ 112 (385)
..+.+.+.+=++--|-...+-.+.|- +++-.++.+.+....++.++.|.+.| |+|||+.-...-..++++ .+
T Consensus 41 ~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD--~~Grk~~cl~~cily~~s----cl 114 (354)
T PF05631_consen 41 LVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLAD--RYGRKKACLLFCILYSLS----CL 114 (354)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHH----HH
Confidence 44566778888888888888877665 46678899999999999999999999 999999864332222111 11
Q ss_pred HHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHH--HH
Q 016656 113 LWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITIS--ST 189 (385)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~s--lf 189 (385)
.-... + .++ +. ++|++ ++. ++...| -.
T Consensus 115 ~k~~~--------------------------------------~--~~~----L~--~GRvl----gGiaTSLLfS~FEs 144 (354)
T PF05631_consen 115 TKHSS--------------------------------------N--YPV----LL--LGRVL----GGIATSLLFSAFES 144 (354)
T ss_pred HHhcc--------------------------------------c--cHH----HH--HHHHH----HHHHHHHHHHHHHH
Confidence 11100 0 111 22 34665 333 333333 33
Q ss_pred HHHHHhh---CCcchhhHHHHHHH-HHHhHHHhhhHHHHHHHH-hH--hHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 016656 190 WARVIDV---MDSESGSRLFGFIG-AGATLGQLFGSLFAAGMA-FL--GPY-LLLFAACLMELAAQSSKGIYKEIPRRPE 261 (385)
Q Consensus 190 Wa~~~di---~~~~eakR~fglig-ag~~lG~I~G~~l~~~la-~~--g~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~ 261 (385)
|-..-.. ++.|--.+.|+... .+-++=+|..+.++..++ .. |+. |+..+++++.++..++.. .|.+..
T Consensus 145 W~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~--~W~ENy-- 220 (354)
T PF05631_consen 145 WMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILK--TWPENY-- 220 (354)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHh--cccccC--
Confidence 5544321 22232345677666 455666777888877776 33 454 999998888776665333 231111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016656 262 ELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTV 341 (385)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~ 341 (385)
. +.. ++++.+.+..++++.+.++|.++.+.+.-.++..+.-+.-|.|...
T Consensus 221 -------g--------~~~---------------~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPa 270 (354)
T PF05631_consen 221 -------G--------DTS---------------SSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPA 270 (354)
T ss_pred -------C--------Ccc---------------cccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeece
Confidence 0 000 0122223677889999999999999999999988877777777655
Q ss_pred HH
Q 016656 342 IA 343 (385)
Q Consensus 342 v~ 343 (385)
..
T Consensus 271 L~ 272 (354)
T PF05631_consen 271 LD 272 (354)
T ss_pred ec
Confidence 54
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00058 Score=70.52 Aligned_cols=124 Identities=11% Similarity=0.111 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccC
Q 016656 73 LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQG 152 (385)
Q Consensus 73 ~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (385)
..+....+.++++| |+|||+.+.+.....++.++++.+.. ..
T Consensus 367 ~~i~~~~~~~~l~d--r~grr~~~~~~~~~~~~~~l~~~~~~--~~---------------------------------- 408 (505)
T TIGR00898 367 VELPAKLITLLLID--RLGRRYTMAASLLLAGVALLLLLFVP--VD---------------------------------- 408 (505)
T ss_pred HHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHHHHcC--CC----------------------------------
Confidence 44566777888999 99999998777666555544433311 00
Q ss_pred CCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhH
Q 016656 153 STANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGP 232 (385)
Q Consensus 153 ~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~ 232 (385)
..| ... ...+.............+.+++|+++++.+.+..|+.++.+.+|.++||.+.+ +...+.
T Consensus 409 -----~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~ 473 (505)
T TIGR00898 409 -----LYF-----LRT----ALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWL 473 (505)
T ss_pred -----chH-----HHH----HHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHH
Confidence 011 111 11111222233344577899999999999999999999999999999999988 555444
Q ss_pred H-HHHHHHHHHHHHHHHH
Q 016656 233 Y-LLLFAACLMELAAQSS 249 (385)
Q Consensus 233 ~-lll~aa~l~~l~~~~~ 249 (385)
. ++.+.+++..+++...
T Consensus 474 ~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 474 FLPLVLFGGLALLAGILT 491 (505)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 3 5444444444444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00096 Score=68.19 Aligned_cols=164 Identities=12% Similarity=0.119 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhhchhhhhhc-cCccchh--HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 016656 36 CFFFILSAYFVVLPLRDEGAIS-LGLSKLP--GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFL 112 (385)
Q Consensus 36 ~~Flil~~y~ilrpv~d~l~~s-~Gae~lp--~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~ 112 (385)
..++...+++...+..+....+ .|.+.-. .+......++++..|+.|+++| |++|||++.......++..+.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~D--r~grr~~~~~~~~~~~~~~~~~~~ 335 (438)
T PRK09952 258 LRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLAD--RFGRRRVYITGALIGTLSAFPFFM 335 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555555443 4433321 2222223345777889999999 999999876554332222222222
Q ss_pred HHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016656 113 LWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWAR 192 (385)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~ 192 (385)
...... . .| ..+ +..+.............|++
T Consensus 336 ~~~~~~--------------------------------------~-~~-----~~~----~~~~l~~~~~~~~~~~~~~~ 367 (438)
T PRK09952 336 ALEAQS--------------------------------------I-FW-----IVF----FSIMLANIAHDMVVCVQQPM 367 (438)
T ss_pred HHHcCC--------------------------------------h-HH-----HHH----HHHHHHHHHHHHHHHHHHHH
Confidence 111000 0 11 111 11111122234456678999
Q ss_pred HHhhCCcchhhHHHHHHH-HHHhHHHhhhHHHHHHHHh-H-h-HH-HHHHHHHHHHHHHHHH
Q 016656 193 VIDVMDSESGSRLFGFIG-AGATLGQLFGSLFAAGMAF-L-G-PY-LLLFAACLMELAAQSS 249 (385)
Q Consensus 193 ~~di~~~~eakR~fglig-ag~~lG~I~G~~l~~~la~-~-g-~~-lll~aa~l~~l~~~~~ 249 (385)
++|.++++.+....|+.. .+..+|+.++|.+++++.. . + .. ++...+++..+++.+.
T Consensus 368 ~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~ 429 (438)
T PRK09952 368 FTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA 429 (438)
T ss_pred HHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 999999987777777754 4455889999999888863 2 2 22 4444444444454443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00041 Score=67.93 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
........+++++|.++++++.+.+|+..+.+.+|..+||.++|++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 352 VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 4445567899999999999999999999999999999999998864
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00047 Score=70.27 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhccc
Q 016656 72 ILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQ 151 (385)
Q Consensus 72 ~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (385)
....+.....++++| |+|||+++.+.....++.+.++... .....
T Consensus 262 i~~i~~~~~~g~l~d--r~g~r~~l~~~~~~~~v~~~l~~~~-~~~~~-------------------------------- 306 (418)
T TIGR00889 262 FSEIFFILTIPFFLK--RFGIKKVMLLSLVAWALRFGFFAYG-DPEYF-------------------------------- 306 (418)
T ss_pred HHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHHHHHHHHc-Ccchh--------------------------------
Confidence 344667788999999 9999999988877765555444431 10000
Q ss_pred CCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHH-HHHhHHHhhhHHHHHHHH
Q 016656 152 GSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIG-AGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 152 ~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fglig-ag~~lG~I~G~~l~~~la 228 (385)
..| .+. +...+ ............-.+++|.++++++.+.+|+.+ +..++|.++||.++|.+.
T Consensus 307 ------~~~-----~l~-l~~~l---~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~ 369 (418)
T TIGR00889 307 ------GYA-----LLF-LSMIV---YGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV 369 (418)
T ss_pred ------hHH-----HHH-HHHHH---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 001 111 00111 111122233455678999999999999999997 678999999999999886
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00059 Score=69.92 Aligned_cols=67 Identities=15% Similarity=0.039 Sum_probs=46.9
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHh-hhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhh
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQL-FGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKE 255 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I-~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~ 255 (385)
.+.++.|.++++++.+.+|+.+..+++|+. .||.+++.+. ..|.. .+.+.+++.++++.+..++.+.
T Consensus 368 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (452)
T PRK11273 368 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 437 (452)
T ss_pred HHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345678999999999999999998888865 5888888886 55643 3444444444555555555444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0012 Score=66.30 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~l~~l~~~~ 248 (385)
..+.+.+|.++ +++.+..++.+...++|..+||.+++.+.. .+.. .+.+.+++.++++..
T Consensus 325 ~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK15011 325 IGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC 386 (393)
T ss_pred HHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44567788886 568889999999999999999999998874 4543 555555555444443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0019 Score=68.27 Aligned_cols=168 Identities=25% Similarity=0.243 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCcc-chhHHHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 27 TSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLS-KLPGLFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 27 ~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae-~lp~l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
.+.++....++++...++..+.|+ ++.+ .|.+ ..-++..+++.+. ++.+.+.+++.+ ++++++++......+
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl---~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~--~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPL---FARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRR--RLSSRRLVLLASLLF 294 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhH---HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCcchhhHHHHHHH
Confidence 334444444444444455555443 2322 3332 2345555555544 777788889988 999999988777777
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++..+.+++... .| ... ..+++.... ..
T Consensus 295 a~~~~~lal~~~-------------------------------------------~~-----~~~---~~l~l~G~~-~~ 322 (524)
T PF05977_consen 295 ALALLLLALSPS-------------------------------------------FW-----LAL---IALFLAGAA-WI 322 (524)
T ss_pred HHHHHHHhcchH-------------------------------------------HH-----HHH---HHHHHHHHH-HH
Confidence 666665555322 23 211 123333222 23
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~ 251 (385)
...+.+-..+-..+|.+.+.|.+++.......|..+|+.+.|.++ .+|.. .++++++.+.++..+.+.
T Consensus 323 ~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 323 IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677888999999999999999999999999999999998 66764 566666555555555433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0044 Score=63.17 Aligned_cols=250 Identities=17% Similarity=0.097 Sum_probs=143.1
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh-HHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHH
Q 016656 22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP-GLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLI 99 (385)
Q Consensus 22 i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp-~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~ 99 (385)
.|+...+.+.+..++++.-.+..++.-|+...+-.+.|-++-. ++..++.. ...++=..||-+.| |+|.|+...+.
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~d--rfGgR~~~~~s 85 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTD--RFGGRKWTILS 85 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhc--ccCchHHHHHH
Confidence 3445555666677777777777788888777777556654443 44445533 44888999999999 99999998877
Q ss_pred HHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHH
Q 016656 100 HRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVA 179 (385)
Q Consensus 100 ~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~ 179 (385)
....++--+..+++.+.. + .| -+.. ..++ -
T Consensus 86 ~~l~~IP~~~~~~a~~~~--------------------------------------~--~~-----~ll~-~gll----~ 115 (417)
T COG2223 86 MLLLLIPCLGLAFAVTYP--------------------------------------S--TW-----QLLV-IGLL----L 115 (417)
T ss_pred HHHHHHHHHHHHHHccCC--------------------------------------c--hH-----HHHH-HHHH----H
Confidence 766655555444433311 0 12 2210 1222 2
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh---HH-HHHHHHHHHHHHHHHHHHHhh
Q 016656 180 LLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG---PY-LLLFAACLMELAAQSSKGIYK 254 (385)
Q Consensus 180 ~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g---~~-lll~aa~l~~l~~~~~~~l~~ 254 (385)
+....+.+.--..++..+|+|+-.-..|+-| +||+|.-+-..++-.+. ..+ .. -..+..+.++++.++.+..
T Consensus 116 G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~-- 192 (417)
T COG2223 116 GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLG-- 192 (417)
T ss_pred hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444555666678999999999999999999 89998877655544444 333 22 2333333333444443333
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHH-HHHHHHH
Q 016656 255 EIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWL-SAVVSSF 333 (385)
Q Consensus 255 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l-~~~~~~l 333 (385)
.++.++ .++ +.++. .+ +.++.+.+.|.+..++++-+. ++--.-+
T Consensus 193 -~~d~p~------------~r~-------------------~~~~~--~~-~~~~~v~~~~~~W~lsllY~~tFG~Fvgf 237 (417)
T COG2223 193 -MNDVPE------------HRA-------------------SVKPQ--LP-AQLKAVFSNKDTWLLSLLYFATFGGFVGF 237 (417)
T ss_pred -hCCChh------------hhc-------------------ccccc--ch-hHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 222110 000 01111 11 668889999999877765433 2221222
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 016656 334 FYFQKVTVIAMTVSSSLGRRRLLAEINSF 362 (385)
Q Consensus 334 ~~f~~~~~v~~~~~~~~~~~af~G~~~~~ 362 (385)
. .....+.++.|.+....+..+......
T Consensus 238 s-~~l~~~~~~~fg~~~~~Ag~~a~~f~~ 265 (417)
T COG2223 238 S-AYLPMYLVTQFGLSPVTAGLIAFLFPL 265 (417)
T ss_pred H-HHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 1 123455667777665554444433333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00074 Score=70.86 Aligned_cols=180 Identities=17% Similarity=0.107 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh-------HhHH-HHHHHHHHHHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF-------LGPY-LLLFAACLMELAAQSSK 250 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~-------~g~~-lll~aa~l~~l~~~~~~ 250 (385)
+.+-+....-+=.++...++.+|..+..|+..+.+++|.|+||.++..+-+ .|-. ++++.+++.++..+
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi--- 221 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI--- 221 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh---
Confidence 445555566677889999999999999999999999999999999887532 1222 66666655433332
Q ss_pred HHhhhcCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHH
Q 016656 251 GIYKEIPRRPE---ELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLS 327 (385)
Q Consensus 251 ~l~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~ 327 (385)
.++.+.+..|+ -+++.+++-.. ++. +. .+++.- .++ -.+.+++..+++|.+...++..++.
T Consensus 222 ~~f~~lp~~P~~~~fl~~~ek~~~~-~~~--~~--------~~~~~~-~~~----~~~~~~~~a~~dp~vw~~~l~~~~~ 285 (495)
T KOG2533|consen 222 VVFFFLPDNPSKAWFLTDEEKELVV-ERL--RE--------SPSGGI-ENK----FKWKGFKEALKDPGVWPFSLCYFFL 285 (495)
T ss_pred eEEEEecCChhhccccchHHHHHHH-HHH--Hh--------ccCCCc-ccc----cCHHHHHHHHhchhHHHHHHHHHHH
Confidence 22222333232 11111100000 000 00 000000 010 2367789999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016656 328 AVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 377 (385)
Q Consensus 328 ~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~ 377 (385)
..+.+-..+...-+.++...-.+..+..++....+.|++..++-.+++-|
T Consensus 286 ~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr 335 (495)
T KOG2533|consen 286 KLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR 335 (495)
T ss_pred hhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence 87766333333344444222334566668888888888888877777666
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00087 Score=67.16 Aligned_cols=171 Identities=12% Similarity=0.118 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCcc--chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae--~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
++....+..|+...+++.....-+.+..+ .|.+ +...+.........+..++.++++| |++||+++.......++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d--r~~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR--FFDLQRILTVLAGLALV 283 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH--HhchhhHHHHHHHHHHH
Confidence 45555666677777776666666666644 4443 2233332223445778888999999 99999987765543322
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
.+.++. .. .. .+ |... ..+++ .......
T Consensus 284 ~~~~~~--~~-~~----------------------------------------~~----~~~~----~~~~~-G~~~~~~ 311 (394)
T PRK03699 284 LMYLFV--NT-DD----------------------------------------PS----HLLY----AILGL-GFFSSAI 311 (394)
T ss_pred HHHHHH--Hc-CC----------------------------------------ch----HHHH----HHHHH-HHHHHHH
Confidence 222211 11 00 11 1111 11122 2223334
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhh
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYK 254 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~ 254 (385)
.+...++..|..+ ++.++.+|.+...+.+|..+||.+++++. ..|.. .+++.+++..++..++..+.+
T Consensus 312 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 312 YTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 4556667777765 44567789999999999999999999987 44643 444444444444444344434
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0019 Score=64.95 Aligned_cols=172 Identities=10% Similarity=0.027 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhccCccchh--HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHH-HHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLP--GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVL-IHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp--~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~-~~~~f~~ 105 (385)
+++...+..|+...+++......+.+..+.|.+.-. .+.......+.+..++.|+++| |++||+.+.. .....++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d--r~~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGD--KLGWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHH
Confidence 344445555555556555555555555445544332 2222334456889999999999 9999887532 1111112
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+.+.+...... +. .| ... ++++.........
T Consensus 301 ~~~~l~~~~~~~~-------------------------------------~~-~~-----~~~----~~~~~~G~~~~~~ 333 (402)
T TIGR00897 301 FTLALYYIPQHFG-------------------------------------HS-FA-----VAL----IIAIALGIFLAGY 333 (402)
T ss_pred HHHHHHHHHHccC-------------------------------------Cc-HH-----HHH----HHHHHHHHHHHHH
Confidence 1111111111000 00 12 111 1111112222222
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~ 251 (385)
.. .++.+.|. +++++.+.+|+.+++.++|..+||.+++.+. ..|.. .+.+.+++..+++....+
T Consensus 334 ~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 334 VP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 22 34566776 4578999999999999999999999999887 44653 555555555455444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.002 Score=64.31 Aligned_cols=164 Identities=13% Similarity=0.017 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hH-HHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PG-LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~-l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
++++...+..|+...+++..-+.-+....+.|.+.. .+ ++........+..+..+++.| |+++|+++.+....+++
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~--r~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQ--NCSARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHh--hCCHHHHHHHHHHHHHH
Confidence 345555556666666666666655555545555432 33 333334444777888899999 99999998877777766
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
.++++++... .|. .+. +-.++.-.+ .+.
T Consensus 283 ~~~~~~~~~~-------------------------------------------~~~----~~~----~q~l~g~~~-~~~ 310 (382)
T TIGR00902 283 RWAIIGAIEA-------------------------------------------FPL----IFL----LQILHCGTF-AVC 310 (382)
T ss_pred HHHHHHhHhh-------------------------------------------HHH----HHH----HHHHHHHHH-HHH
Confidence 6665544211 121 111 111111111 222
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHH-HHHhHHHhhhHHHHHHHH-hHhHHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIG-AGATLGQLFGSLFAAGMA-FLGPYLLLFAACLMELAA 246 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fglig-ag~~lG~I~G~~l~~~la-~~g~~lll~aa~l~~l~~ 246 (385)
....-.+++|. +++++.+..++.+ .+.++|.++||.++|++. ..|...++..+++.++++
T Consensus 311 ~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 311 HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33456678888 7778788888876 577899999999999998 446543444444443443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0019 Score=65.77 Aligned_cols=66 Identities=12% Similarity=-0.031 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhH-HHhhhHHHHHHHHhHhH-H-HHHHHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLFAAGMAFLGP-Y-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~l-G~I~G~~l~~~la~~g~-~-lll~aa~l~~l~~~~~~~ 251 (385)
....|.+++|.++++.+...+|+....+++ ++...|.+.+.+...|. . .++..+++.++++.+...
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999876665 23347777666554443 2 444444444455554333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0014 Score=65.88 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
+.+...+.+++...+|+.....-+.+..+.|.+. .-.+.......+++..+..+++.| |++|++...+.....++.
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~--r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMAR--HQDRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHH
Confidence 3444445555666677666666666666655433 233333334456888899999999 999998877655443333
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
++++.. .... . .+ ... .. . ..-.....
T Consensus 284 ~~~~~~--~~~~-----~----------------------------------~~-----~~~----~l--~-g~g~g~~~ 310 (393)
T PRK09705 284 FCGFIW--LPLQ-----L----------------------------------PV-----LWA----MV--C-GLGLGGAF 310 (393)
T ss_pred HHHHHH--ccch-----H----------------------------------HH-----HHH----HH--H-HHhccchH
Confidence 332221 1000 0 01 100 11 1 11111223
Q ss_pred HHHHHHHHhhCC-cchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhH-H-HHHHHHHHHHHHHHH
Q 016656 187 SSTWARVIDVMD-SESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP-Y-LLLFAACLMELAAQS 248 (385)
Q Consensus 187 slfWa~~~di~~-~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~-~-lll~aa~l~~l~~~~ 248 (385)
...++.+.|..+ ++++.+.+|++...+.+|..+||.+.+++. ..|. . .+.+.+++.++...+
T Consensus 311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK09705 311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII 376 (393)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 345556667775 578899999999999999999999999987 4454 3 344444444333333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0019 Score=67.15 Aligned_cols=171 Identities=17% Similarity=0.088 Sum_probs=94.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhC-CcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh--H--H-HHHHHHHHHHH
Q 016656 173 GFFL-WVALLNLITISSTWARVIDVM-DSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG--P--Y-LLLFAACLMEL 244 (385)
Q Consensus 173 lfyi-w~~~~~~~~~slfWa~~~di~-~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g--~--~-lll~aa~l~~l 244 (385)
+-|+ |.-+++.+++ =+|+..+.+| |++||.++.+.=..++++|..+-..+...+. .++ . . ....+.++.++
T Consensus 117 vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi 195 (467)
T COG2211 117 VTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI 195 (467)
T ss_pred HHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 3444 4333444444 5788888887 5789999999999999999877666666654 332 1 1 23333333333
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHH
Q 016656 245 AAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFL 324 (385)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v 324 (385)
+.......++.... +..++ + +. +...+....+.+..++++|-++.+++..
T Consensus 196 ~~i~~l~~~~~v~E----------R~~~~------~---------~~-----~~~~~~~~~~~~~~~~~Nrp~~~~l~~~ 245 (467)
T COG2211 196 GVILLLFCFFNVKE----------RVVET------Q---------PT-----KTGVKLKLKDSFLLIFKNRPLLLLLLMN 245 (467)
T ss_pred HHHHHHHHHHHhhc----------ccCcc------c---------cC-----cccccccHHHHHHHHHccchHHHHHHHH
Confidence 33333333332110 11000 0 00 0112235677888999999999888866
Q ss_pred HHHHHHH-----HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 325 WLSAVVS-----SFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 325 ~l~~~~~-----~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
+++.... ..+||... .-+.++. +......+.....+....+.+++.+|+|
T Consensus 246 l~~~~~~~i~~s~~~yy~~y------~lg~~~l---~~~~~~~~~~~~~l~~~~~~p~L~~~~g 300 (467)
T COG2211 246 LLLFIAFNIRGSIMVYYVTY------VLGDPEL---FAYLLLLASGAGLLIGLILWPRLVKKFG 300 (467)
T ss_pred HHHHHHHHHHhhhhheeEEE------EcCChHH---HHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 6665543 33444321 1122233 3333444445555555666789999887
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0019 Score=64.43 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhCCc-chhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDS-ESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 184 ~~~slfWa~~~di~~~-~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
.........+.+..++ +++.+.+++.+...++|.++||.++|.+. ..|.. .++.++++..+++..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3444555566566665 78899999999999999999999999987 45653 555655555554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.017 Score=58.90 Aligned_cols=155 Identities=16% Similarity=0.120 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH-HhHhHH-HH----HHHHHHHHHH
Q 016656 172 MGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM-AFLGPY-LL----LFAACLMELA 245 (385)
Q Consensus 172 ~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l-a~~g~~-ll----l~aa~l~~l~ 245 (385)
..|..+.-+.+...+ -+=++++|.+++|++.|.=+++-.-.-+|.++++.+.+.+ ..+++. +. .++.+...++
T Consensus 94 l~F~l~G~G~~~s~T-~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~ 172 (403)
T PF03209_consen 94 LAFLLYGLGVHASGT-SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLN 172 (403)
T ss_pred HHHHHHHhhHhHhHH-HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 355555555444333 5668999999999999999998888889999988776655 345442 22 2222333444
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHH
Q 016656 246 AQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLW 325 (385)
Q Consensus 246 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~ 325 (385)
....+.. +.+. + + .. + +..+++.+..+.++.++++|..+....+++
T Consensus 173 ~ia~wg~---E~r~---------~--~--~~--~----------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 173 LIALWGQ---EPRR---------S--R--RA--A----------------AAERPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHhc---ccCC---------c--c--cc--c----------------CCCCCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 4443332 1111 0 0 00 0 001112367899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHH
Q 016656 326 LSAVVSSFFYFQKVTVIAMTVS-SSLGRRRLLAEINS 361 (385)
Q Consensus 326 l~~~~~~l~~f~~~~~v~~~~~-~~~~~~af~G~~~~ 361 (385)
+.++.....|..-+.+..+-+. +..|-|.+-+....
T Consensus 219 l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~ 255 (403)
T PF03209_consen 219 LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGG 255 (403)
T ss_pred HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHH
Confidence 9999999988888888887775 44555555554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00068 Score=66.74 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG 231 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g 231 (385)
.....+++++|.++++++.+.+|+....+++|..+||.+++.+. ..|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 345 IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34577889999999999999999999999999999999999987 445
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0033 Score=65.73 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCc--cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCch--hHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKA--KALVLIHRF 102 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Ga--e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~--~vl~~~~~~ 102 (385)
+.++..++-.|+-.-++..+..+.-.+..+ .|- .++-.+.+.+-..+++.+.+++++.| |+|-| +.+...+..
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~--r~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQD--RFGPKTKRTLLISLIL 358 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHH
Confidence 444444455555556666666655555554 343 44444455556677899999999999 99999 887777766
Q ss_pred HHH-HHHH-HHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHH
Q 016656 103 FSV-SLLV-FFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVAL 180 (385)
Q Consensus 103 f~~-~~ll-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~ 180 (385)
..+ .... +++... ..|.+. .| -+- ++-++...
T Consensus 359 ~~~i~~~g~~G~~~~--~~g~~~-----------------------------------~~-----~f~----~~a~~~G~ 392 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPS--FFGLKS-----------------------------------PW-----EFW----VLAVLIGL 392 (477)
T ss_pred HHHHHHHHHHHhhhc--ccCccc-----------------------------------HH-----HHH----HHHHHHHH
Confidence 522 2111 111111 111100 23 110 22223455
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH-hH-H-HHHHHHHHHHHHHHH
Q 016656 181 LNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL-GP-Y-LLLFAACLMELAAQS 248 (385)
Q Consensus 181 ~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~-g~-~-lll~aa~l~~l~~~~ 248 (385)
.....-+.--++.+++.|+++...+||+.+..+-...++||.+.+.+... |. + .++.-.++.++++.+
T Consensus 393 ~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l 463 (477)
T PF11700_consen 393 FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL 463 (477)
T ss_pred HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 55566778889999999999999999999999999999999999998743 43 3 344444444445444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0026 Score=63.31 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
......+.++|..++++.....+.++.+.++|..+||.++|++. ..+.. .+.+.+.+.
T Consensus 302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~ 361 (381)
T PRK03633 302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS 361 (381)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34566677889998888888899999999999999999999887 44543 444444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.056 Score=55.19 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcc--C---ccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISL--G---LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~--G---ae~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
.+.....++|+--+...+..++-+.+-... + +..+.+.+.+.|..+-+- -+++.+ |+|+|+=+...+..+
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lp---a~~~~k--k~gyk~gi~lgL~l~ 88 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLP---AGLLIK--KLGYKAGIVLGLLLY 88 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhcc---HHHHHH--HhhhHHHHHHHHHHH
Confidence 344455556666666666666666654442 2 233456666666655433 456667 999999988877777
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++...+|+-+-... .|. .|.+ .+|+..++.+.
T Consensus 89 avg~~lF~pAa~~~-----------------------------------------~y~----~FL~---~lFila~Gi~~ 120 (422)
T COG0738 89 AVGAALFWPAASSK-----------------------------------------SYG----FFLV---ALFILASGIGL 120 (422)
T ss_pred HHHHHHHhhhhhhh-----------------------------------------hHH----HHHH---HHHHHHhhhHH
Confidence 65555554221110 221 2221 34444444322
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.= ...=.|+.+..++|++.|...+..+..++|+++||.+++++-
T Consensus 121 Le-taaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 121 LE-TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred HH-hccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 155678999999999999999999999999999999999874
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0024 Score=65.72 Aligned_cols=148 Identities=15% Similarity=0.079 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
++...+..++....++....-.+.+..+ .|.+.. ..........+++..++.|+++| |++||+.........++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD--r~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSD--LANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCchHHHHHHHHHHH
Confidence 4445555566555555455555555544 555433 22222334456899999999999 999998765544333221
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
..++.+ .... + .+ +.++ .++. .........
T Consensus 338 ~~~~~~--~~~~-----~----------------------------------~~----~~~~----~~~~-~G~~~~~~~ 367 (467)
T PRK09556 338 FTLGVY--QHAT-----S----------------------------------EY----MYLA----SLFA-LGFLVFGPQ 367 (467)
T ss_pred HHHHHH--HhcC-----c----------------------------------HH----HHHH----HHHH-HHHHHhhHH
Confidence 111111 1000 0 11 0111 1111 111111112
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhH-HHhhhHHHHHHHHh
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLFAAGMAF 229 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~l-G~I~G~~l~~~la~ 229 (385)
......+.|.++++++.+..|+++..+++ |+.++|.+.|.+..
T Consensus 368 ~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 368 LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 23345677999999999999999999997 77999999998865
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0041 Score=62.07 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=45.9
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l 252 (385)
...+.+.|..+ +++.|.+|+.+....+|..+||.++|.+. ..|.. .+...+++..+++......
T Consensus 314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 34566777765 67789999999999999999999999987 55654 5555555555555554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0031 Score=65.74 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHH
Q 016656 183 LITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 183 ~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l 252 (385)
......+++++.|.++.+...+-||+.+...++|.++++.+.|.+. ..|.. .+.+.+++..+++.+...+
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567999999999999999999999999999998888888877 45643 5555555555565555544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0013 Score=67.68 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
......++.+.|.+++++..+.+|++..+.++|.++||.+++.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 344567888999999999999999999999999999999999876
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0021 Score=62.11 Aligned_cols=112 Identities=12% Similarity=0.002 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCC
Q 016656 64 PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKE 143 (385)
Q Consensus 64 p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (385)
..+.......+++..++.+++.| |++|++++.......++..+++.+... +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------- 300 (365)
T TIGR00900 250 GWVLAAFGLGALLGALLLGLLGR--YFKRMALMTGAIFVIGLAILVVGLTPP-N-------------------------- 300 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHhhch-h--------------------------
Confidence 33344444556888899999999 999999877654443333332222100 0
Q ss_pred CcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHH
Q 016656 144 DPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLF 223 (385)
Q Consensus 144 ~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l 223 (385)
.| ... +.++.............++++.|.++++++.+.+|+......+|..+||.+
T Consensus 301 ---------------~~-----~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 356 (365)
T TIGR00900 301 ---------------FP-----LFL----VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356 (365)
T ss_pred ---------------HH-----HHH----HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 111 111112222334456788999999999999999999999999999999999
Q ss_pred HHHHH
Q 016656 224 AAGMA 228 (385)
Q Consensus 224 ~~~la 228 (385)
++.+.
T Consensus 357 ~g~l~ 361 (365)
T TIGR00900 357 AGPLA 361 (365)
T ss_pred HHHHH
Confidence 88765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0019 Score=65.03 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc--cCccch-hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS--LGLSKL-PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s--~Gae~l-p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+.+....+..++..++++.....-. ...+ .|.+.. .++.......+++..++.++++| |++||+++.......+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~--r~g~~~~~~~~~~~~~ 298 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQV-YYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVK--KFGRKILFAGGILLMV 298 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhh-eeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHH
Confidence 3444455555555556555433322 2222 232222 23333345566888999999999 9999999877666555
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
+.++++.+.. .. .| ... ++.+........
T Consensus 299 ~~~~~~~~~~--~~----------------------------------------~~-----~~~----~~~~~~g~~~~~ 327 (437)
T TIGR00792 299 LGYLIFFFAG--SN----------------------------------------LP-----LIL----VLIILAGFGQNF 327 (437)
T ss_pred HHHHHHHHcc--hh----------------------------------------HH-----HHH----HHHHHHHHHHHH
Confidence 5444433210 00 12 111 122222222334
Q ss_pred HHHHHHHHHHhhCCc-------chhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 185 TISSTWARVIDVMDS-------ESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 185 ~~slfWa~~~di~~~-------~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.....|++++|+.+. ++..+.+|+.+....+|..+|+.+.+.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 328 VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999764 44567899999999999999998888764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0029 Score=64.48 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=46.4
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
..+..++|.++++++.+..|+.+..+.+|..+||.+.+++. ..|.. .+...+++..+++..
T Consensus 357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~ 419 (434)
T PRK11663 357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL 419 (434)
T ss_pred HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999988887 45643 444444444444443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0051 Score=63.84 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccchh-HH-HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLP-GL-FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~lp-~l-~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
++......++....|+......+++... .|.+... .+ .......+++..++.|+++| |+|||+++......+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~grr~~~~~~~~~~~~~ 329 (490)
T PRK10642 252 LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD--RFGRRPFVILGSVALFVL 329 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHH
Confidence 3333334454556666666666666644 4543322 22 22334455777899999999 999999776544332221
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.+.+........ .+ +.++ ++++ .........
T Consensus 330 ~~~~~~~~~~~~----------------------------------------~~----~~~~--~~~~---~g~~~~~~~ 360 (490)
T PRK10642 330 AIPAFILINSNV----------------------------------------IG----LIFA--GLLM---LAVILNCFT 360 (490)
T ss_pred HHHHHHHHhCCC----------------------------------------HH----HHHH--HHHH---HHHHHHHHH
Confidence 111111111000 11 0111 1121 122222234
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
...+.++.++++++.+.+..|+....+.+++.++|.+.+++.
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~ 402 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV 402 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999866666777788898888876
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0051 Score=61.77 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHhhhc
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIYKEI 256 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~~~~ 256 (385)
..+...++.+.++ ++-+++.++..++|.+.++.++|.+. .+|.. .+.+++++..+++.+.+...+.+
T Consensus 325 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~~ 393 (402)
T PRK11902 325 VALLMALCNRSFS----ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGTI 393 (402)
T ss_pred HHHHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344445555544 55578877777888887777888877 66764 66666666666666655554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0059 Score=63.37 Aligned_cols=74 Identities=11% Similarity=-0.041 Sum_probs=44.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 305 LDGLRLIFSSNYLLSVSLFLWL-SAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 305 ~~~l~~i~~s~yL~~i~~~v~l-~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
..+++..++.|.+....+++++ |....+..+..+. ...+.... -..+.|.+....++.+++.+... ++.++|+|
T Consensus 242 ~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~-~~~~~lG~---s~~~~G~~~~~~~v~~i~g~~~~-~~~~~~~~ 316 (468)
T TIGR00788 242 ILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFC-ATTQCLPG---GPSFSGMSKVVGNLGSLCGVGGY-DRFLKTFP 316 (468)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEE-EEcccCCC---CcchhhhHHHHHHHHHHHHHHHH-HHHHhhCC
Confidence 4456667888998887777777 5443322211100 00001122 23448888888888888888875 67788876
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0055 Score=62.38 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHH
Q 016656 35 SCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFF 111 (385)
Q Consensus 35 l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~ 111 (385)
...++...+++.+....+.+..+ .|-+.. ..........+++..++.|+++| |++||+++.......++..+ ..
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D--r~g~r~~~~~~~~~~~~~~~-~~ 321 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD--RIGRRPVLIAFTVLAILTAY-PA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHH-HH
Confidence 33445556666676666666655 454333 23222333445788899999999 99999987654332211100 00
Q ss_pred HHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016656 112 LLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWA 191 (385)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa 191 (385)
..+..... + .+ ... +..++............|.
T Consensus 322 ~~~~~~~~----~----------------------------------~~-----~~~----~~~~~~~~~~g~~~~~~~~ 354 (434)
T PRK15075 322 LSWLVAAP----S----------------------------------FA-----RML----AVELWLSFLYGSYNGAMVV 354 (434)
T ss_pred HHHHHcCC----c----------------------------------hH-----HHH----HHHHHHHHHHHHHHhhHHH
Confidence 00110000 0 11 000 1111122222233346778
Q ss_pred HHHhhCCcchhhHHHHHHH-HHHhHHHhhhHHHHHHHH-hHh
Q 016656 192 RVIDVMDSESGSRLFGFIG-AGATLGQLFGSLFAAGMA-FLG 231 (385)
Q Consensus 192 ~~~di~~~~eakR~fglig-ag~~lG~I~G~~l~~~la-~~g 231 (385)
++.|.++++++.+.+|+.. .+..+++.+||.+.+.+. ..|
T Consensus 355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 8999999999999999864 444455777888888776 344
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0084 Score=60.07 Aligned_cols=109 Identities=10% Similarity=-0.018 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhc
Q 016656 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAV 149 (385)
Q Consensus 70 ~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (385)
....+++..++.++++| |+++|+.+.+....+++..+++.........
T Consensus 260 ~~~~~~~g~~~~g~l~~--r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------------------------ 307 (406)
T PRK15402 260 VFGALIAGNLTLARLTS--RRPLRSLIRMGLWPMVAGLLLAALATVISSH------------------------------ 307 (406)
T ss_pred HHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHHHHcccc------------------------------
Confidence 34455777889999999 9999998877665555555554443221100
Q ss_pred ccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 150 DQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 150 ~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
. .| |.+.+ .+++-. + ...........+.+.. ++++.|.++..+....+|..+|+.+++.+.
T Consensus 308 -------~-~~----~~~~~--~~~~g~--g-~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 308 -------A-YL----WLTAG--LSLYAF--G-IGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred -------c-HH----HHHHH--HHHHHH--H-HHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 11 22221 122111 1 1122233444455544 488899999999999999999999988875
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.027 Score=60.48 Aligned_cols=142 Identities=7% Similarity=-0.014 Sum_probs=84.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhcc
Q 016656 59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVS 138 (385)
Q Consensus 59 Gae~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (385)
+.++..|+-++-.....+..|++|+||| .||||.++.....+..+..++.+-.-..+
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSD--lfGRr~~~i~g~~l~vvG~Iv~atA~~~~--------------------- 132 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSD--LFGRRYFFIIGSLLGVVGSIVCATAQNMN--------------------- 132 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHH--HhcchHHHHHHHHHHHhHHHHhhcCCcHH---------------------
Confidence 4566667655555556788899999999 99999999877766544444443321110
Q ss_pred ccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHh
Q 016656 139 SNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQL 218 (385)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I 218 (385)
.|+ .+.++|- .+.....+....++|+.+.+.|...+.+.....-....
T Consensus 133 ---------------------------~~i-ag~~l~G----vgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~ 180 (599)
T PF06609_consen 133 ---------------------------TFI-AGMVLYG----VGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTW 180 (599)
T ss_pred ---------------------------HHH-HHHHHHH----HhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhc
Confidence 122 1345532 22333445566689999887666556555555555555
Q ss_pred hhHHHHHHHHhHhH--HHHHHHHHHHHHHHHHHHHHhhh
Q 016656 219 FGSLFAAGMAFLGP--YLLLFAACLMELAAQSSKGIYKE 255 (385)
Q Consensus 219 ~G~~l~~~la~~g~--~lll~aa~l~~l~~~~~~~l~~~ 255 (385)
+||.++..+...+. +-+...+++..+++......|++
T Consensus 181 ~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~P 219 (599)
T PF06609_consen 181 ISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFP 219 (599)
T ss_pred ccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCC
Confidence 67777666553333 24555555555555554454554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.019 Score=60.00 Aligned_cols=133 Identities=9% Similarity=0.000 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcc
Q 016656 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPK 146 (385)
Q Consensus 67 ~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (385)
+.+.+.-.++-....|.+.+ |+|-|+++......-++.-++.=.+...+
T Consensus 79 ~ss~~~G~i~~~iP~g~l~~--k~G~r~v~~~~~~~sa~~t~l~P~aa~~~----------------------------- 127 (466)
T KOG2532|consen 79 FSSFFWGYILGQIPGGYLAD--KFGARRVFFISGLISALLTLLTPLAASIG----------------------------- 127 (466)
T ss_pred HHHHHHHHHHHHcCcHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------
Confidence 33444445777777899999 99999999877766543333332222211
Q ss_pred hhcccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHH
Q 016656 147 AAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAA 225 (385)
Q Consensus 147 ~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~ 225 (385)
.|..+ +.|++ .++ ..+.....-...+.-.|+.|+.|+.++..+|.++|.+++-.++|
T Consensus 128 -----------------~~~~~-~~R~l----qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg 185 (466)
T KOG2532|consen 128 -----------------FYLLL-VLRFL----QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSG 185 (466)
T ss_pred -----------------chhhH-HHHHH----hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12111 23554 333 33444566667778889999999999999999999999998889
Q ss_pred HHHh--HhH-HHHHHHHHHHHHHHHHHHHH
Q 016656 226 GMAF--LGP-YLLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 226 ~la~--~g~-~lll~aa~l~~l~~~~~~~l 252 (385)
++.. +|- ..+++.+++..+-..+..++
T Consensus 186 ~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 186 LLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 8873 563 46666665554444443343
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0017 Score=65.98 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccchh-HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLP-GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~lp-~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
+.+...++..++..+++.+....-.-.... .|.+... .+.......+++..|+++++++ |+|+++........+++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~--r~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSK--RFGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH--HccceeehhhhHHHHHH
Confidence 456666677777777777766655444433 5666554 4344556677999999999999 99999999999988888
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+++.+....+ .| |.+ ++.+...+.....
T Consensus 303 ~~~~~~~~~~~~-----------------------------------------~~----~~~-----i~~~l~gi~~~~~ 332 (428)
T PF13347_consen 303 GFLLLFFLGPGS-----------------------------------------PW----LVL-----ILFILAGIGYGAF 332 (428)
T ss_pred HHHHHHHHHhhh-----------------------------------------HH----HHH-----HHHHHhHhhhccc
Confidence 777766654211 22 122 2222233334445
Q ss_pred HHHHHHHHHhhCCcchhh-------HHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGS-------RLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 186 ~slfWa~~~di~~~~eak-------R~fgligag~~lG~I~G~~l~~~l 227 (385)
....|+..+|+.+.+|-| ..|+..+....+|.-+|+.+.+.+
T Consensus 333 ~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 333 FVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 578999999999987744 468888888888888888777765
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.011 Score=60.58 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hH-HHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PG-LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~-l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
.+....+..|+..+++....-.-+-+... .|-+.. .. +........++..++.++++| |++||+++.+.....++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~--r~g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVN--RFGYRRVLVATTLGLAL 339 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHH
Confidence 34444455555555555443333333332 344332 23 333333344667799999999 99999998766665544
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+++.+... . .|. |... +.++.........
T Consensus 340 ~~~~~~~~~~-~-----------------------------------------~~~---~~~~----~~~~~~g~~~~~~ 370 (471)
T PRK10504 340 VSLLFMLVAL-L-----------------------------------------GWY---YLLP----FVLFLQGMVNSTR 370 (471)
T ss_pred HHHHHHhccc-c-----------------------------------------ccH---HHHH----HHHHHHHHHHHHH
Confidence 4443332110 0 110 1111 1122222223344
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.+..+..+.+..++++..+.+++.+....+|..+|+.+++.+-
T Consensus 371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888999999999999999999999999999988763
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.079 Score=55.47 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=46.2
Q ss_pred chHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 016656 303 AILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 382 (385)
Q Consensus 303 ~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrl 382 (385)
..++.+|.+.+.|.+...++-.++|.-..+-+--.-.-+..+...-++.. +..+...+++.+++--++ .+++-+|+
T Consensus 269 ~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~---l~~~~l~~~i~a~~Ga~~-~g~l~~r~ 344 (477)
T PF11700_consen 269 RLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ---LIVFGLVVQIVAIIGALL-FGWLQDRF 344 (477)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 45677888999998887777777765433222222233333333322222 555556666666666555 47999998
Q ss_pred CC
Q 016656 383 GL 384 (385)
Q Consensus 383 G~ 384 (385)
|-
T Consensus 345 g~ 346 (477)
T PF11700_consen 345 GP 346 (477)
T ss_pred CC
Confidence 83
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.02 Score=61.42 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=65.6
Q ss_pred HHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCC
Q 016656 76 IAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTA 155 (385)
Q Consensus 76 l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (385)
.+.++.|+++| |+|||+++.+....+++.++++++....... +
T Consensus 76 ~~~lp~G~L~D--r~G~R~vllig~ll~~iG~ll~ala~~~~i~-----------------------------------~ 118 (591)
T PTZ00207 76 YFLLPYSFIYD--YLGPRPIFVLSMTVFCLGTLLFALTFQEVIE-----------------------------------G 118 (591)
T ss_pred HHHHHHHHHHH--HhCcHHHHHHHHHHHHHHHHHHHHHhccccc-----------------------------------C
Confidence 45556899999 9999999999999988888888775331100 0
Q ss_pred CCCccccccchhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhh-hHHHHHHHH
Q 016656 156 NSADWGDHGWFYVSVRMGFFLWVALLNL-ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLF-GSLFAAGMA 228 (385)
Q Consensus 156 ~~~~w~~~~w~~~~~~~lfyiw~~~~~~-~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~-G~~l~~~la 228 (385)
..| .+. +++. ..++.. ......=..+.+.|+ +++.+..|+..++.++|..+ ++...+++.
T Consensus 119 --s~~-----~l~----l~r~-l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 119 --SVV-----RLS----VYNG-LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred --cHH-----HHH----HHHH-HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 023 211 1111 122211 111122234677885 78899999999999999975 666665554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0029 Score=65.81 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
..+.|.+.+|+++.+-+.+.+|+....+.+|.++||.+.+++.
T Consensus 410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~ 452 (502)
T TIGR00887 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLA 452 (502)
T ss_pred CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 3478999999999999999999999999999999999988875
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.017 Score=57.65 Aligned_cols=123 Identities=11% Similarity=-0.043 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcc
Q 016656 71 LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVD 150 (385)
Q Consensus 71 ~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (385)
....++...+.+++.| |+++++++.......++.+++++..-.
T Consensus 250 ~~~~~~~~~~~g~l~~--r~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------- 292 (382)
T PRK11128 250 VVAEVLIFAFSNRLFR--RWSARDLLLLSAICGVVRWGLMGSTTA----------------------------------- 292 (382)
T ss_pred HHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHhhhh-----------------------------------
Confidence 3445777788999999 999999987666655554443322100
Q ss_pred cCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHH-HHHhHHHhhhHHHHHHHH-
Q 016656 151 QGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIG-AGATLGQLFGSLFAAGMA- 228 (385)
Q Consensus 151 ~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fglig-ag~~lG~I~G~~l~~~la- 228 (385)
.|. .++ ...++.-.+.. .....-.+..+.. +++..+.+++.+ .+.++|..+||.++|.+.
T Consensus 293 --------~~~----~~~----~~~l~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 293 --------LPW----LIV----IQILHCGTFTV-CHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred --------HHH----HHH----HHHHHHHHHHH-HHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 231 111 11111111222 2223334555553 444456788876 555678889999999987
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 016656 229 FLGPYLLLFAACLMELAAQS 248 (385)
Q Consensus 229 ~~g~~lll~aa~l~~l~~~~ 248 (385)
..|...++..+++.++++..
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 355 HLGAGVFWVMALVALPALFI 374 (382)
T ss_pred hccHHHHHHHHHHHHHHHHH
Confidence 44554555555444444433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0064 Score=59.67 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCC-CchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNL-SKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~-~r~~vl~~~~~~f~~ 105 (385)
.++...+..++....++.....-+.+..+.|.+. ...+.......+++..++.|+++| |+ +||+...+.....++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~d--r~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALAR--RVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHh--hhccchHHHHHHHHHHHH
Confidence 3444444555555666655555555555544433 233343445566888999999999 99 455555554444444
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+.+.+... .+. |.+. .++ +......
T Consensus 276 ~~~~~~~~~~-------------------------------------------~~~---~~~~---~l~----g~~~g~~ 302 (355)
T TIGR00896 276 GLCGLLFAPM-------------------------------------------HGL---WAWA---LVL----GLGQGGA 302 (355)
T ss_pred HHHHHHHhhh-------------------------------------------hHH---HHHH---HHH----HHhhhhH
Confidence 4443332111 010 0111 011 2223334
Q ss_pred HHHHHHHHHhhC-CcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 186 ISSTWARVIDVM-DSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 186 ~slfWa~~~di~-~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
..+.++.+.|.. +++++.+.+|++...+.+|..+||.+.|.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 303 FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666776655 4567788999999999999999999988876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0044 Score=63.30 Aligned_cols=109 Identities=19% Similarity=0.335 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcc
Q 016656 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPK 146 (385)
Q Consensus 67 ~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (385)
.......+++..|+.+++++ |+|||+.+......+++..+...+. ....
T Consensus 270 ~~~~~i~~ii~~~~~~~l~~--r~gk~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------------- 318 (444)
T PRK09669 270 LVTGMIAGLFGALLSERLLG--KFDRVRAFKWTIVAFVILSALIFFI-PPSN---------------------------- 318 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHh-Ccch----------------------------
Confidence 33334556778899999999 9999999877665544332222111 0000
Q ss_pred hhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchh---hH----HHHHHHHHHhHHHhh
Q 016656 147 AAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESG---SR----LFGFIGAGATLGQLF 219 (385)
Q Consensus 147 ~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~ea---kR----~fgligag~~lG~I~ 219 (385)
.| .+. +..+....-......+.|+.++|+.|.+|. +| .|+..+....+|..+
T Consensus 319 ------------~~-----~~~----~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~al 377 (444)
T PRK09669 319 ------------VW-----LIF----ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAI 377 (444)
T ss_pred ------------HH-----HHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHH
Confidence 22 111 111112333445567899999999987764 33 578888888899999
Q ss_pred hHHHHHHH
Q 016656 220 GSLFAAGM 227 (385)
Q Consensus 220 G~~l~~~l 227 (385)
|+.+++.+
T Consensus 378 g~~i~g~l 385 (444)
T PRK09669 378 GGAVVGWI 385 (444)
T ss_pred HHHHHHHH
Confidence 88887764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=67.46 Aligned_cols=138 Identities=14% Similarity=-0.043 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhhchhhhhhc-cCccch---hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 016656 38 FFILSAYFVVLPLRDEGAIS-LGLSKL---PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLL 113 (385)
Q Consensus 38 Flil~~y~ilrpv~d~l~~s-~Gae~l---p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~ 113 (385)
++....+......-+.+..+ .|.+.. .++.......+++..++.+++++ |+++++++.+....+++.++++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~--r~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSG--RHIELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC--CceEccchhHHHHHHHHHHHHHHHh
Confidence 33333333333344444444 454322 33343444455788899999999 9999888776655554444444332
Q ss_pred HhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 114 WQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARV 193 (385)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~ 193 (385)
.. .| +..+ .+++ ............++++
T Consensus 320 ~~-------------------------------------------~~----~~~~----~~~~-~g~~~~~~~~~~~~~~ 347 (1146)
T PRK08633 320 PS-------------------------------------------LA----SVLV----LFFL-FGFSAGLFIVPLNALI 347 (1146)
T ss_pred hh-------------------------------------------HH----HHHH----HHHH-HHHHHHHhhHHHHHHH
Confidence 11 12 0111 1111 1222333444678999
Q ss_pred HhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh
Q 016656 194 IDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 194 ~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~ 229 (385)
.+.++.+++.+.+|+.+....+|.++|+.+++.+..
T Consensus 348 ~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 348 QFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred hhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888777654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0095 Score=60.81 Aligned_cols=148 Identities=17% Similarity=0.149 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+.+....+..++...++......-+-+... .|.+.. ..+.... ...+++..|+.+++++ |+++|+++.+....++
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--r~g~~~~~~~g~~~~~ 305 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVA--RIGKKNTFLIGALLGT 305 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHH
Confidence 345556666666777766665544433333 344333 3333332 3445788999999999 9999999887776655
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
+.++++.+ .... ..| +.+.. .++ ...-...
T Consensus 306 i~~~~~~~--~~~~---------------------------------------~~~----~~~~~--~~l---~g~G~~~ 335 (448)
T PRK09848 306 CGYLLFFW--VSVW---------------------------------------SLP----VALVA--LAI---ASIGQGV 335 (448)
T ss_pred HHHHHHHH--cCch---------------------------------------hHH----HHHHH--HHH---HHHHHHH
Confidence 55544432 1000 022 11110 111 1222334
Q ss_pred HHHHHHHHHHhhCCcchh-------hHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESG-------SRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 185 ~~slfWa~~~di~~~~ea-------kR~fgligag~~lG~I~G~~l~~~l 227 (385)
.....|+..+|+.+.+|. ...+|+.+....+|..+|+.+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999988774 4457788888888888887776654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.02 Score=57.55 Aligned_cols=47 Identities=17% Similarity=0.007 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.......+|++.+|.++++.+.+..|+.+..+.+|+++||.+.+.+.
T Consensus 294 ~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 294 MLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred hhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 34445579999999999999999999999999999999998877554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0032 Score=60.59 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhchhhhhhc-cCcc---chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 016656 38 FFILSAYFVVLPLRDEGAIS-LGLS---KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLL 113 (385)
Q Consensus 38 Flil~~y~ilrpv~d~l~~s-~Gae---~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~ 113 (385)
++..+.+......-+.+..+ .|.+ +...+.......+.+..++.++++| |+++++...+......+..+.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSD--RFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443222 3333 3333344445566777999999999 9999888777666654444433332
Q ss_pred HhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 114 WQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARV 193 (385)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~ 193 (385)
..... + .| .+. .++...............++
T Consensus 294 ~~~~~--------------------------------~-------~~-----~~~-----~~~~~g~~~~~~~~~~~~~~ 324 (352)
T PF07690_consen 294 PFSSS--------------------------------P-------VW-----LII-----ALFLIGFGFGIVFPILFSLI 324 (352)
T ss_dssp HHHCH--------------------------------H-------HH-----HHH-----HHHHHHHHHHHHCHHHHHHH
T ss_pred HHhhh--------------------------------H-------HH-----HHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 22100 0 12 221 11122333445567899999
Q ss_pred HhhCCcchhhHHHHHHHHHHhHHHhhhH
Q 016656 194 IDVMDSESGSRLFGFIGAGATLGQLFGS 221 (385)
Q Consensus 194 ~di~~~~eakR~fgligag~~lG~I~G~ 221 (385)
.|..+++++.+.+|+.+...++|.++||
T Consensus 325 ~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 325 QELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999997
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.038 Score=55.11 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHH
Q 016656 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLV 109 (385)
Q Consensus 65 ~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ll 109 (385)
.+.......+.+..++.++++| |++++++..+.....++.+++
T Consensus 239 ~~~~~~~~~~~ig~~~~g~l~~--r~~~~~~~~~~~~~~~i~~~~ 281 (382)
T PRK10091 239 FIMMLVGLGMVLGNLLSGRLSG--RYSPLRIAAVTDFIIVLALLM 281 (382)
T ss_pred HHHHHHHHHHHHHhHHHheecc--ccCchhHHHHHHHHHHHHHHH
Confidence 3333444556888999999999 999999887766555544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0059 Score=62.23 Aligned_cols=148 Identities=7% Similarity=0.005 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
+....+..|+...+++.....-+.+..+ .|.+. ...+.......+++..++.|++.| |++||+++.+.....++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD--KIDPRKLVTIGLILYAVG 334 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCcHHHHHHHHHHHHHH
Confidence 3444455555555555544445555544 34433 233333444566888999999999 999999876555444433
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.+++.+...... ..| +... ...+..-+. ....
T Consensus 335 ~~~~~~~~~~~~---------------------------------------~~~----~~~~----~~~l~g~g~-~~~~ 366 (485)
T TIGR00711 335 FYWRAFTFTPDT---------------------------------------PFL----AIAL----PQFIRGFGM-GCFF 366 (485)
T ss_pred HHHHhccCCCCC---------------------------------------CHH----HHHH----HHHHHHHHH-HHHH
Confidence 333322111000 011 0111 111111111 2222
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
......+.+..+++++.+..|+.+...++|..+|+.+.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778999999999999999999999999887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0044 Score=64.26 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~~-lll~aa~l~~l~~~~~~~l 252 (385)
.....|+++.++. ++++...+|++++++++|.+++|.+.+.-...+-. .+++.++++.+++++...+
T Consensus 365 ~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 365 ACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 3346788888765 57888899999999999999988775410111222 4445455555555554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.015 Score=58.66 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAA 239 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa 239 (385)
...+++++|..+++.+.+.|+..+ .+.+|..+||.++|.+. +.|+. .+++.+
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~ 370 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILA 370 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHH
Confidence 356788999999988889999765 56689999999999987 55664 444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0081 Score=58.18 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.....|.+++|..+++++.+.+|+.+...++|..+||.+.+.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 370 (379)
T TIGR00881 327 PQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA 370 (379)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 34467889999999999999999999999999999999988876
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.04 Score=56.29 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cC--ccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~G--ae~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
++....+..++...+++..-.--.....+ .| .+.+++++++--..+++-+.+.|+++| | +.++.+.......++
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d--r-~~~~~l~~~~~l~a~ 288 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD--R-GPRRALIAALLLLAL 288 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcc--c-cchhHHHHHHHHHHH
Confidence 45566666666666666555555555555 34 455677766544566899999999999 9 888888877777766
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
.++.+.+.-.. .| .-. ...++| ++...-
T Consensus 289 ~~l~l~~~~~~------------------------------------------~~-----~~~---~~~~~w--g~a~~~ 316 (394)
T COG2814 289 ALLALTFTGAS------------------------------------------PA-----LAL---ALLFLW--GFAFSP 316 (394)
T ss_pred HHHHHHHhcch------------------------------------------HH-----HHH---HHHHHH--HHHhhh
Confidence 66664443220 12 111 022223 222222
Q ss_pred HHHHH-HHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHH
Q 016656 186 ISSTW-ARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 186 ~slfW-a~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l 252 (385)
..+-| .-.++ ..+|++.-.-++..+..|+|--+|..++|..- ..|.. +.++++++..+++.+....
T Consensus 317 ~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 317 ALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred hhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 33344 66888999999999999999999999999876 66765 7777877777676665543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=60.97 Aligned_cols=151 Identities=13% Similarity=-0.008 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccchhHHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~lp~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
+.++..+...|+...++++....-.-++.. .|.+....... .....+++..|+.+++++ |+|||+.+.+.....++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~--r~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVK--SLSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHH
Confidence 445555555566666666655544322222 34433332333 333556888899999999 99999998766655444
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+.+.+....... ..| .+. +.-+....-....
T Consensus 309 ~~~~~~~~~~~~~~--------------------------------------~~~-----~~~----i~~~l~g~~~~~~ 341 (473)
T PRK10429 309 SCGVLLLMGLAAPH--------------------------------------NAL-----LIV----IAGILLNIGTALF 341 (473)
T ss_pred HHHHHHHHhccCch--------------------------------------hHH-----HHH----HHHHHHHHHHHHH
Confidence 44433222110000 012 111 1111112223345
Q ss_pred HHHHHHHHHhhCCcchh---hH----HHHHHHHHHhHHHhhhHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESG---SR----LFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 186 ~slfWa~~~di~~~~ea---kR----~fgligag~~lG~I~G~~l~~~l 227 (385)
..+.|++++|+.|.+|- +| .|+..+....+|.-+|+.+.|++
T Consensus 342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999886542 22 68999999999999998888876
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.045 Score=53.59 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCC
Q 016656 65 GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKED 144 (385)
Q Consensus 65 ~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (385)
.+.......+++..++.++++| |++||+.+......+.+..+++.+.......
T Consensus 246 ~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 298 (385)
T TIGR00710 246 LLFALNIIAMIFGGFLNGRFIK--KWGAKSLLRMGLILFAVSAVLLEITAILGLG------------------------- 298 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------
Confidence 3344444566888999999999 9999999877666655555555443221100
Q ss_pred cchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhH-HHhhhHHH
Q 016656 145 PKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLF 223 (385)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~l-G~I~G~~l 223 (385)
.+ +... ........-........+..+.|..+ +++.+..++.+..... |.+.|+.+
T Consensus 299 --------------~~----~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~ 355 (385)
T TIGR00710 299 --------------SW----AMII----GPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV 355 (385)
T ss_pred --------------hH----HHHH----HHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0111 11111112234455577888889885 6777888988776654 55556655
Q ss_pred H
Q 016656 224 A 224 (385)
Q Consensus 224 ~ 224 (385)
+
T Consensus 356 ~ 356 (385)
T TIGR00710 356 S 356 (385)
T ss_pred H
Confidence 4
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.022 Score=56.95 Aligned_cols=123 Identities=14% Similarity=0.178 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchh
Q 016656 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAA 148 (385)
Q Consensus 69 ~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (385)
.......+..+..+++.| |++||+++.+....+++.+.++.. . ..
T Consensus 262 ~~~i~~~~~~~~~g~l~~--r~g~~~~l~~~~~l~~l~~~~~~~--~-~~------------------------------ 306 (396)
T TIGR00882 262 MGELLNALIMFCAPLIIN--RIGAKNALLIAGTIMSVRIIGSSF--A-TT------------------------------ 306 (396)
T ss_pred HHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHHHh--c-CC------------------------------
Confidence 334445667788899999 999999987666555554443332 1 00
Q ss_pred cccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHH-HHHHHhHHHhhhHHHHHH
Q 016656 149 VDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGF-IGAGATLGQLFGSLFAAG 226 (385)
Q Consensus 149 ~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgl-igag~~lG~I~G~~l~~~ 226 (385)
.| |.+.. ..+ .+. ..........++++.++.+-+...++. .+...++|.++|+.++|+
T Consensus 307 ----------~~----~~~~~--~~l----~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~ 366 (396)
T TIGR00882 307 ----------AL----EVVIL--KML----HAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGN 366 (396)
T ss_pred ----------hH----HHHHH--HHH----HHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence 22 12210 111 111 122223455566777766665555665 678899999999999999
Q ss_pred HH-hHhHH-HHHHHHHHHHHHH
Q 016656 227 MA-FLGPY-LLLFAACLMELAA 246 (385)
Q Consensus 227 la-~~g~~-lll~aa~l~~l~~ 246 (385)
+. ..|.. .+++.+++..+..
T Consensus 367 l~~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 367 MYDSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred HHHhcccHHHHHHHHHHHHHHH
Confidence 97 45653 5544444443333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.015 Score=60.62 Aligned_cols=104 Identities=11% Similarity=0.127 Sum_probs=74.9
Q ss_pred HHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhc
Q 016656 71 LILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAV 149 (385)
Q Consensus 71 ~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (385)
+.+. ++-+.++|.++| |+|||+++..++..++++-++.++.-.
T Consensus 127 ~~~G~~vG~~i~g~lsD--~~GRk~~~~~~~~~~~i~~~~~a~a~~---------------------------------- 170 (521)
T KOG0255|consen 127 FFLGVLVGSLIFGPLSD--RFGRKPVLLVSLLLFIIFGILTAFAPN---------------------------------- 170 (521)
T ss_pred HHHHHHHHHhhheehHh--hcccHHHHHHHHHHHHHHHHHHHHhCc----------------------------------
Confidence 3444 566667789999 999999999998887555543333211
Q ss_pred ccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh
Q 016656 150 DQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 150 ~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~ 229 (385)
.| .|.. -|.+ .+.......+.-+.++.|++++++|.+.-.+ ....-.|+.+++..++++..
T Consensus 171 ---------~~-----~~~~-~Rfl---~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 171 ---------YW-----MFLI-FRFL---SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred ---------HH-----HHHH-HHHH---HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 22 3331 2333 3444666777999999999999999999988 88888888888888887764
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.11 Score=50.99 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 173 GFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 173 lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.+++...+ +...-.....|++|+.++|++.|..++..+..++|.++||.+++.+.
T Consensus 16 ~~f~~g~G-~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 16 ALFVLASG-LTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHhh-HHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444333 33345588899999999999999999999999999999999999876
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.019 Score=65.64 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
............+++.+.+++++..|.+|+.+....+|..+|+.+++.+.
T Consensus 345 g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 345 AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445567899999999999999999999999999999999988886
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.024 Score=59.11 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCc-cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGL-SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Ga-e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
+++.+.++.||...+|.-+--.-+.+..+ .+. +.+...+ ....++.+..|+-|+|+| |+|++|+..+.....++.
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~-l~~l~~~l~rplgG~LAD--RiG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAF-FGPFIGAIARSVGGAISD--KFGGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH-HHHHHHHHHHHhhHHHHH--hcCchHHHHHHHHHHHHH
Confidence 45556666666665555443233333333 221 1111112 223456888899999999 999999998777655444
Q ss_pred H
Q 016656 107 L 107 (385)
Q Consensus 107 ~ 107 (385)
.
T Consensus 330 ~ 330 (462)
T PRK15034 330 S 330 (462)
T ss_pred H
Confidence 3
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.054 Score=54.63 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL 230 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~ 230 (385)
...-+.++|..+++++.+.+|+.+...++|..+||.++|.+...
T Consensus 316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 35567889999999999999999999999999999999999743
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.016 Score=58.72 Aligned_cols=147 Identities=11% Similarity=0.119 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcc--Cccch-hHHHHH-HHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISL--GLSKL-PGLFVG-SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~--Gae~l-p~l~~~-~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
.++...+.++|...+++.+..--+.+..+. |-+.. .....+ ....+.+-..+.|+++| |++||+...+....+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~d--r~~~r~~~~~~~~~~- 319 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSD--RLKERKHHTALPYLF- 319 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhc--ccCccHHHHHHHHHH-
Confidence 344556667777777877777777777653 32322 233332 23345777889999999 999877543222111
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
....+.+...... .+. .+.. ++ ....+. ..
T Consensus 320 -~~~~~~~~~~~~~----------------------------------------~~~----~~~~---~~-~~~~g~-~~ 349 (412)
T TIGR02332 320 -AAAGWLLASATDH----------------------------------------NLI----QLLG---II-MASMGS-FS 349 (412)
T ss_pred -HHHHHHHHHhcCC----------------------------------------HHH----HHHH---HH-HHHHHh-hh
Confidence 1111111111000 000 0000 11 001111 12
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.....|....|.++++++.+.+|++++.+++|.++||.+.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 350 AMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 23467888889999999999999999999999999999988876
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.035 Score=57.50 Aligned_cols=165 Identities=11% Similarity=0.100 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhC--CCCCCchhHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFS--LPNLSKAKALVLIHRFF 103 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~--~~r~~r~~vl~~~~~~f 103 (385)
.+++..+...+-+-++|.+-......+..+.|.++- ...+.++-+..+++.|+.|..|| ..|+||||=+..+..+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 677788888889999999988888888888888554 24455555566999999999998 55899999988877665
Q ss_pred HHH-HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCcc-ccccchhhhhhHHHHHHHHHH
Q 016656 104 SVS-LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADW-GDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 104 ~~~-~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~~~~w~~~~~~~lfyiw~~~~ 181 (385)
... +.+..++-..... +.++ + ..+-. .| +. +++ +=+...++-
T Consensus 112 i~~~l~Lig~aaDig~~-----------------lgd~--~---------~~~~~-~rai~---~~~----lg~~LLD~A 155 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLL-----------------LGDN--E---------RKPVK-PRAIV---LFI----LGFWLLDVA 155 (498)
T ss_pred HHHHHhhhhhHhhhhHH-----------------hcCC--c---------ccccc-hHHHH---HHH----HHhHHHHhh
Confidence 221 1111111111110 0000 0 00000 11 00 010 000112333
Q ss_pred HHHHHHHHHHHHHhhCCcchhhH-HHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSR-LFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR-~fgligag~~lG~I~G~~l~~~la 228 (385)
|-+.--=.=++.+|....+|.++ .....+.-.++|.++|-.+++++.
T Consensus 156 ~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 156 NNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred hhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence 33333356688999999988877 777777777777777777766665
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.2 Score=49.75 Aligned_cols=45 Identities=4% Similarity=0.083 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 016656 66 LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFL 112 (385)
Q Consensus 66 l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~ 112 (385)
+.......+++..+..+++.| |++||++..+....+.+..+++.+
T Consensus 244 ~~~~~~~~~i~~~~~~~~l~~--r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 244 IMALTAGVSMTVSFSTPFALG--IFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566788899999999 999999887766655544444443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.09 Score=55.17 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=68.6
Q ss_pred HHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCC
Q 016656 66 LFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKED 144 (385)
Q Consensus 66 l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (385)
..++.+.+. ++-+..-+.++| |+|||..+++......+.-+++.+......
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~--~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~-------------------------- 115 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLAD--RFGRKNALLLSNLLAVLAALLMGLSKSAPS-------------------------- 115 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhcchHHHHHHHHHHHHHHHHHHHHHHhhh--------------------------
Confidence 344566665 777777889999 999998888777666555555555444321
Q ss_pred cchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHH
Q 016656 145 PKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLF 223 (385)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l 223 (385)
.. .++ ++|+.. ++.........=-|..|+-|.+-|...=.+...+.++|.++|..+
T Consensus 116 --------------~e-----~li-~GR~i~---Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~ 171 (485)
T KOG0569|consen 116 --------------FE-----MLI-LGRLIV---GLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVL 171 (485)
T ss_pred --------------HH-----HHH-HHHHHH---HHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 11 232 457763 333334444555569999998888777666666666666666444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.047 Score=55.58 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=35.1
Q ss_pred HHHHHhhCCcchhhHHHHHHHHHHhHHH-hhhHHHHHHHH-hHhH
Q 016656 190 WARVIDVMDSESGSRLFGFIGAGATLGQ-LFGSLFAAGMA-FLGP 232 (385)
Q Consensus 190 Wa~~~di~~~~eakR~fgligag~~lG~-I~G~~l~~~la-~~g~ 232 (385)
+..+.|.++++++.+..|+.+..+.+|+ .+||.+.|.+. ..|.
T Consensus 367 ~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~ 411 (438)
T TIGR00712 367 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 411 (438)
T ss_pred HHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccc
Confidence 4567899999999999999998888875 67999988876 4454
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.046 Score=57.29 Aligned_cols=165 Identities=16% Similarity=0.237 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~l 108 (385)
+.....+.-.+.|.+.+.--...++.+.|.+. ..++-.++-.+.++.+.+-..+.| |+|||+++.+......+..+
T Consensus 273 i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid--~~gRRpLll~~~~~~~~~~~ 350 (485)
T KOG0569|consen 273 IGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID--RLGRRPLLLISLSLMAVALL 350 (485)
T ss_pred HHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHH
Confidence 33334445566677777777777888877644 467777777777888888999999 99999999999999988888
Q ss_pred HHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 016656 109 VFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188 (385)
Q Consensus 109 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~sl 188 (385)
++.......... . .|+. |..++ ..+..+..++...-++
T Consensus 351 ~~~~~~~l~~~~--------~-----------------------------~~~~--y~~i~---~~~~~~~~f~~G~gpi 388 (485)
T KOG0569|consen 351 LMSIALFLSNSF--------G-----------------------------SWLS--YLCIA---AIFLFIISFAIGPGPI 388 (485)
T ss_pred HHHHHHHHHHHh--------h-----------------------------hHHH--HHHHH---HHHHHHHhhhcCCCch
Confidence 888766644210 0 1320 11121 2223345567777789
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHH
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAA 239 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa 239 (385)
-|-+.+|.++...|......-++.--+...+=+..--.+. .+|+. .+++++
T Consensus 389 ~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i 441 (485)
T KOG0569|consen 389 PWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVI 441 (485)
T ss_pred hHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 9999999999999988877766665554444332222222 44654 344444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.16 Score=51.85 Aligned_cols=146 Identities=16% Similarity=0.060 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCc--cchhHHHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGL--SKLPGLFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Ga--e~lp~l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
++..++..|++..+....-.--+....+.|. +...+..++.-.++ +.+--..+++.. |+|-++++.+...++++-
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~--r~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLK--RFGIKWLLLLALVAYAVR 286 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHH
Confidence 4444445555555444444444444444552 33344443333334 666667789988 999999999999988888
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
+.+++..-.+ .| +.+. +. +...+.-.++.
T Consensus 287 ~~l~a~~~~~------------------------------------------~~----~~~~----~~-~l~q~lhG~tf 315 (400)
T PF03825_consen 287 WLLYAYFSDP------------------------------------------WP----FIVA----LQ-LLGQLLHGLTF 315 (400)
T ss_pred HHHHHHhcCC------------------------------------------cH----HHHH----HH-HHHHhhhhHHH
Confidence 8888764221 11 0110 00 00011122233
Q ss_pred HHHH----HHHHhhCCcchhhHHHHHHHH-HHhHHHhhhHHHHHHHH
Q 016656 187 SSTW----ARVIDVMDSESGSRLFGFIGA-GATLGQLFGSLFAAGMA 228 (385)
Q Consensus 187 slfW----a~~~di~~~~eakR~fgliga-g~~lG~I~G~~l~~~la 228 (385)
..+| .|+++..|++.+.+.=++.++ ..++|..+|+.++|++-
T Consensus 316 ~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 316 GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344 789999999999888887765 46888889988888886
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.015 Score=60.53 Aligned_cols=147 Identities=15% Similarity=0.087 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cC-ccchhHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LG-LSKLPGLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~G-ae~lp~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
.++...+..+|..+++.+-..+-.-.+.- .| .|..++....+.. ..++..+++.+|++ ++|||+++.+.....++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~--~~gkk~~~~~~~~~~~i 314 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK--KFGKKKLFLIGLLLLAV 314 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhchHHHHHHHHHHHHH
Confidence 34444555556666666555554444444 34 4555766554444 44666999999999 99999999998877777
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
..+++.+.-..+ .++ .+ ++.+...+-....
T Consensus 315 ~~~~~~f~~~~~-----------------------------------------~~l----~~-----~~~~i~~~g~~~~ 344 (467)
T COG2211 315 GYLLLYFTPAGS-----------------------------------------VVL----IV-----VALIIAGVGTGIA 344 (467)
T ss_pred HHHHHHhhcCcc-----------------------------------------hHH----HH-----HHHHHHHHHhhcc
Confidence 766666643100 221 11 1212223334556
Q ss_pred HHHHHHHHHhhCCcchhh---H----HHHHHHHHHhHHHhhhHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGS---R----LFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 186 ~slfWa~~~di~~~~eak---R----~fgligag~~lG~I~G~~l~~~l 227 (385)
..+-|+.++|+-|.+|-| | .|+..+...=+|.-+|+.+.++.
T Consensus 345 ~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 345 NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999853 4 57777777778888877666664
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.045 Score=56.00 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH---hHH--HHHHHHHHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL---GPY--LLLFAACLMELAAQS 248 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~---g~~--lll~aa~l~~l~~~~ 248 (385)
.....|....|..+ +.+....|+.+.++.+|++++|.+++++... +.+ .+.+.++..+++..+
T Consensus 378 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 445 (465)
T TIGR00894 378 PLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF 445 (465)
T ss_pred hhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34456766777764 4788889999999999999999888876522 222 344444444444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.3 Score=48.68 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
+........+.+.|.. ++++.|..|+++.....++..|+.+++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 310 NGAIYPIVVAQALRPF-PQATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred HHHHHHHHHHHHhhhC-cccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344455566666666 468999999999988888888888888775
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.059 Score=52.77 Aligned_cols=142 Identities=10% Similarity=0.013 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccC--ccchhHHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~G--ae~lp~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
++...+..++...+++.....-+....+.| .++.-.+.... ...+++..++.++++| |+|||+.+.+.....++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~--r~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQ--PLNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHH
Confidence 444455555566666666666666655544 33333333322 2345677888899999 999999977666655554
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
+.++.+....... .+.. +++ .| ... ...+..........
T Consensus 289 ~~~~~~~~~~~~~-------------------~~~~-----------~~~--~~-----~~~----~~~~l~~~~~~~~~ 327 (356)
T TIGR00901 289 NAGFVWLASNGHH-------------------DGIT-----------FPH--LL-----MLF----LTITLEAVTGGLGT 327 (356)
T ss_pred HHHHHHHHhcCcc-------------------cccc-----------cch--HH-----HHH----HHHHHHHHHhHHHH
Confidence 4444432110000 0000 000 12 111 11111233345566
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHh
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGAT 214 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~ 214 (385)
....+++.+.+|++++.|.||+.....+
T Consensus 328 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 328 VAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 6889999999999999999999877654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.37 Score=48.45 Aligned_cols=46 Identities=11% Similarity=-0.082 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCcch-hhHHHHHHHHHHhHHHhhhHHHHHHHHhHhH
Q 016656 187 SSTWARVIDVMDSES-GSRLFGFIGAGATLGQLFGSLFAAGMAFLGP 232 (385)
Q Consensus 187 slfWa~~~di~~~~e-akR~fgligag~~lG~I~G~~l~~~la~~g~ 232 (385)
...++.+.+..+.|+ ..|.+++.+...++|..+|..+.+.+..+|.
T Consensus 312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (393)
T PRK11195 312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGV 358 (393)
T ss_pred hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566667655544 5889999999999999999999887776664
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.091 Score=54.63 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAG 226 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~ 226 (385)
........+.+..+++++.+..++.+...++|..+|+.+.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 368 ALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred HHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777888999999999999999999999999988764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.41 Score=48.16 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACL 241 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l 241 (385)
..-+++.+..+ ++..|..+......++|..+|+.++|.+. ..|.. .+...+++
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~ 379 (394)
T PRK10213 325 GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL 379 (394)
T ss_pred HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 33335666665 55667778888888999999999999987 45654 45444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.35 Score=47.46 Aligned_cols=38 Identities=5% Similarity=0.060 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 64 PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 64 p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
..++......+.+..++.+++.| |++||+.+.+.....
T Consensus 233 g~~~~~~~~~~~~~~~~~g~l~~--r~g~~~~~~~~~~~~ 270 (377)
T PRK11102 233 GYYFALNIVFLFVMTIINSRFVR--RVGALNMLRFGLWIQ 270 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHH
Confidence 34444445566888899999999 999999887666543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.081 Score=54.33 Aligned_cols=108 Identities=12% Similarity=0.220 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchh
Q 016656 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAA 148 (385)
Q Consensus 69 ~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (385)
.+-.++++.+.++|+|-+ |++-++++.+.+....+ ......+.-..
T Consensus 296 ~~~vvA~lg~ii~g~Ld~--rfg~k~vl~~~lvi~~~--~~~~~~~~~~~------------------------------ 341 (438)
T COG2270 296 ALSVVAALGAIIAGFLDE--RFGSKPVLMIGLVILSI--AALYLIFLEGE------------------------------ 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHH--HhCCceeehHHHHHHHH--HHHHHHHcccc------------------------------
Confidence 334566888999999999 99999998876654311 11111111000
Q ss_pred cccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 149 VDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 149 ~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
...| ++. +++...-...-+.-=+|.+...|++|..|+||+.+.-+..+.++||.+.+...
T Consensus 342 --------~~f~-----i~g-------ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t 401 (438)
T COG2270 342 --------LDFW-----ILG-------LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVIT 401 (438)
T ss_pred --------HHHH-----HHH-------HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 0023 321 12343334445566788999999999999999999999999999999999887
Q ss_pred hH
Q 016656 229 FL 230 (385)
Q Consensus 229 ~~ 230 (385)
.+
T Consensus 402 ~i 403 (438)
T COG2270 402 QI 403 (438)
T ss_pred HH
Confidence 54
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.25 Score=51.42 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
........++++++..|++.+.+.+|+...+..+|..+|+.+.....
T Consensus 395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566699999999999999999999999999999999999887765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.06 Score=58.85 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=103.8
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-------------------hHhH-HH-HHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-------------------FLGP-YL-LLFAACLMELAA 246 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-------------------~~g~-~l-ll~aa~l~~l~~ 246 (385)
+==+|+.|-...++...+.|++.+...+|-++|=.+++++. |+|- |+ +++++.++.+++
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 34468999999999999999999999998888888888863 4554 33 566665555555
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHH
Q 016656 247 QSSKGIYKEIPRRPEELPPLRKAD--SDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFL 324 (385)
Q Consensus 247 ~~~~~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v 324 (385)
.-...+ |.++++..++. .+.+..+++.+ .++++....|. -.....+++.++++|-.+...+.-
T Consensus 337 ~p~f~f-------Pk~lp~~~~~~~~~~~~~~k~~~~-------~~~~~~~~~~~-ikdfp~s~~~ll~N~if~~~~l~~ 401 (735)
T KOG3626|consen 337 VPLFFF-------PKELPKSQKRKRARDLHVLKTESG-------GAKSDKTFGKK-IKDFPKSIKRLLSNPIFMLVVLAS 401 (735)
T ss_pred HHHHhC-------cccCccccccchhhhhcccccccc-------cccCCcchhhh-HHHHHHHHHHHhcCchHHHHHHHH
Confidence 544443 22222211110 00000000000 00010011111 126778889999999877666665
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 325 WLSAVV-SSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 325 ~l~~~~-~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
++.... ....-|. -.+++++|..++.++ ..+.+.+++..+.+-.++.|.+++|+-
T Consensus 402 ~~~~~~~~G~~tFl-PKyLE~Qfg~sas~A---n~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 402 VIESLAITGYITFL-PKYLETQFGISASLA---NILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHHHHHHhhHHHhh-HHHHHHHcCCCHHHH---HHHhhhhhhhhhhhhhhccceeeeeec
Confidence 554433 3333344 345667777555543 334457777788888888899998874
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=56.14 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVS 106 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~ 106 (385)
++...+..++....++..-..-+.+..+ .|.+.. ..... .....+++..++.|+++| |++||+.........+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--r~g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISD--RLGGARKLLMSFLGVAMG 304 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHH--hhccchhHHHHHHHHHHH
Confidence 3334444444444444444444445544 454332 23233 334455778889999999 999998876665544443
Q ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 016656 107 LLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI 186 (385)
Q Consensus 107 ~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~ 186 (385)
.+++.+...... + .| ... ..++..........
T Consensus 305 ~~~~~~~~~~~~--------------------------~-------------~~-----~~~----~~~~~~~~~~g~~~ 336 (366)
T TIGR00886 305 AFLVVLGLVSPL--------------------------S-------------LA-----VFI----VLFVALFFFSGAGN 336 (366)
T ss_pred HHHHHhcCCCcc--------------------------h-------------HH-----HHH----HHHHHHHHHhcccc
Confidence 333332111000 0 11 111 11112233333345
Q ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHHhHHH
Q 016656 187 SSTWARVIDVMDSESGSRLFGFIGAGATLGQ 217 (385)
Q Consensus 187 slfWa~~~di~~~~eakR~fgligag~~lG~ 217 (385)
...|+.++|+.+ +++.+.+|++++.+++|+
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 578899999986 799999999999998874
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.056 Score=56.59 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=78.1
Q ss_pred HHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCc
Q 016656 67 FVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDP 145 (385)
Q Consensus 67 ~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (385)
+..+ ...+.+..++.|+++| ++|||+.+.....+|.+..++.+++..
T Consensus 94 ~~s~~~lga~~g~l~~g~l~d--~~GRk~~l~~~~~~~~iG~ii~~~a~~------------------------------ 141 (513)
T KOG0254|consen 94 LTSILNLGALVGSLLAGRLGD--RIGRKKTLLLAVVLFLIGAIIIALAPS------------------------------ 141 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhhh------------------------------
Confidence 3344 4455999999999999 999999999999998887777777542
Q ss_pred chhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHH
Q 016656 146 KAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT-ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA 224 (385)
Q Consensus 146 ~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~-~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~ 224 (385)
.+ |+++ +|+++ ++.... ..+.=-|++|+.+++.|+++-.+.....++|..+|-.++
T Consensus 142 -------------~~----~l~~--GR~l~----G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 142 -------------WY----QLIV--GRILT----GLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred -------------HH----HHHH--HHHHh----ccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 2443 48874 332222 236667799999999999999999999998888884444
Q ss_pred HHH
Q 016656 225 AGM 227 (385)
Q Consensus 225 ~~l 227 (385)
...
T Consensus 199 ~~~ 201 (513)
T KOG0254|consen 199 YGT 201 (513)
T ss_pred hhh
Confidence 333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.12 E-value=2 Score=44.26 Aligned_cols=187 Identities=16% Similarity=0.176 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHh---HH-HHHHHHHHHHHHHHHHHHHhhh--
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLG---PY-LLLFAACLMELAAQSSKGIYKE-- 255 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g---~~-lll~aa~l~~l~~~~~~~l~~~-- 255 (385)
....-..+.+|+-..-|+++-+|.-+..-++.-+|-.+|+.+|..+...+ -. +..++.....++......+=+.
T Consensus 107 ~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 107 ATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 33344488899999999999999999999999999999999988876543 22 5566665555565655554221
Q ss_pred ---cCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHH----
Q 016656 256 ---IPRRPEELPPLRKADSDPRSGA--DGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWL---- 326 (385)
Q Consensus 256 ---~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l---- 326 (385)
.++.+. .+....+.+.+. +..+++......++......+..-..++.-++...++|.++.-.+--.+
T Consensus 187 S~~f~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcg 262 (412)
T PF01770_consen 187 SLFFHRKPP----AEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCG 262 (412)
T ss_pred ccceeccCc----cccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhH
Confidence 111100 000000000000 0000000000000000001111112456667788899998766653332
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 016656 327 SAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTS 378 (385)
Q Consensus 327 ~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l 378 (385)
|..+.|.+...| +..++++....+.|.+++...++..+.-+. .|.+
T Consensus 263 y~qv~nYvQ~LW-----~~v~~~~~~~vYNG~VeA~~tllgA~~al~-~g~v 308 (412)
T PF01770_consen 263 YYQVINYVQSLW-----DTVPPSDNESVYNGAVEAASTLLGAIAALL-AGYV 308 (412)
T ss_pred HHHHHHHHHHHH-----HhcCCCCCCcccchHHHHHHHHHHHHHHHH-HhHh
Confidence 334444444444 444555666777899888888777665444 3555
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.5 Score=46.02 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=89.2
Q ss_pred hccCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhc----------cCccchhHHHHH-HHHHHHHHHHHH----HHh
Q 016656 20 VTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS----------LGLSKLPGLFVG-SLILTLIAAPVS----TLI 84 (385)
Q Consensus 20 ~~i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s----------~Gae~lp~l~~~-~~~~~~l~~p~y----~~L 84 (385)
.+.++.|.+|.+..+..+ +....|++.-+-.+..... .|.+.-+..+.. ......+++|+. +++
T Consensus 265 ~~~~~~~~~~~~~~~~~~-~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l 343 (500)
T PRK09584 265 FAMKGAARRKMIVAFILM-LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKM 343 (500)
T ss_pred hhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 455667777877665544 4444555555544444222 122222222222 232345555665 555
Q ss_pred hCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCcccccc
Q 016656 85 FSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHG 164 (385)
Q Consensus 85 ~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 164 (385)
.+ |++..+.+.+.....++.++..++...... ++ +.-+ .|
T Consensus 344 ~~--r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~--------------------------~~------~~vs--~~---- 383 (500)
T PRK09584 344 GD--RLPMPHKFAIGMVLCSGAFLVLPLGAKFAN--------------------------DA------GIVS--VN---- 383 (500)
T ss_pred Cc--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CC------CccC--HH----
Confidence 55 666656666666666666665544322110 00 0000 12
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 165 WFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 165 w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
|.. +.|+...+=..+....--+++.+..|++.+.|..|+...+..+|..+|+.+.+..
T Consensus 384 ~~~-----~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 384 WLI-----ASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred HHH-----HHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 2333233323344446667799999999999999999988889999988887643
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.46 Score=49.12 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhCCcch---hhHH----HHHHHHHHhHHHhhhHHHHHHH
Q 016656 182 NLITISSTWARVIDVMDSES---GSRL----FGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~e---akR~----fgligag~~lG~I~G~~l~~~l 227 (385)
......+.|+.++|+.+.+| ++|. |+..+....+|.-+|+.+++.+
T Consensus 332 ~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 332 HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688999999999765 3343 6666666667777777666654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.93 Score=45.02 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~ 229 (385)
......++++.|..+ ++..+..++++.+.++|..+|+.+++.+..
T Consensus 315 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 315 MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345577777888886 566777899999999999999998887653
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.23 Score=50.93 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch-hHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL-PGLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l-p~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+.++.+.++.+....++-=+-...+-+..+ .|.+.. .+.+...++ ...++=|+-|+|+| |+|.+|+....+...+
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD--R~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD--RIGGRRVTLAVFVGMA 295 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh--hccchhHHHHHHHHHH
Confidence 345667777766666665555555666666 777655 355665555 44888999999999 9999999988877764
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH-HH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NL 183 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~ 183 (385)
++..+..+...... . ..+ .+ .+. .-++-..++ ..
T Consensus 296 ~~~~~l~~~~~~~~----~-------------------~~~-------------~~-----~~~----~~~l~l~~~~G~ 330 (417)
T COG2223 296 LAAALLSLFLTGFG----H-------------------GGS-------------FV-----VFV----AVFLALFVFAGL 330 (417)
T ss_pred HHHHHHHccccccc----c-------------------Ccc-------------hH-----HHH----HHHHHHHHHhcc
Confidence 44333332111000 0 000 11 222 111111222 22
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAG 226 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~ 226 (385)
.+-++| ..+..++ ++|..-.-|++|+.|++|+.+=|..-+.
T Consensus 331 GnGsvf-k~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~ 371 (417)
T COG2223 331 GNGSVF-KMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGV 371 (417)
T ss_pred Ccchhe-eechHHH-HhhhhHHHHHHHHhccccccchhHHHHH
Confidence 233333 5566666 3488889999999999998776644443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.33 Score=50.40 Aligned_cols=113 Identities=10% Similarity=0.089 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHH-hhhccccccchhhhhhhhhhhhccccCCCCcchhc
Q 016656 71 LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLW-QSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAV 149 (385)
Q Consensus 71 ~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (385)
....++....++++.+ |++.|+++.+.....++..+...... .++..
T Consensus 298 ~v~~i~g~~~~~~~~~--~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------------------------------ 345 (468)
T TIGR00788 298 NLGSLCGVGGYDRFLK--TFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA------------------------------ 345 (468)
T ss_pred HHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHhCceeeeeccccc------------------------------
Confidence 3555889999999998 99999998877766544443322111 10000
Q ss_pred ccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 150 DQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 150 ~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.+.+. .| ...+ ..++ -+....+.....-.++.+..++++....|++.....++|.++|+.+++.+.
T Consensus 346 --~gi~~--~~-----~~~~-~~~l---~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 346 --FGISD--EV-----FVLG-DSII---AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred --cCCCC--ee-----eeee-hhHH---HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 11 1110 0111 122233334455788999999999999999999999999999999999987
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.27 Score=52.00 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccchhHH--HHHHHHHHHHHHHHHHHhhCCCCCCchh--HHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGL--FVGSLILTLIAAPVSTLIFSLPNLSKAK--ALVLIHRFF 103 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp~l--~~~~~~~~~l~~p~y~~L~~~~r~~r~~--vl~~~~~~f 103 (385)
+.++...+-..+..++|.+-.-..+....+.|-++--.. ....-..-.+.-++.|++.| +...++ ++.+++..-
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD--~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD--KPGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC--ccccchHHHHHHHHHHH
Confidence 677777777788888888887778888888777665433 33334445888999999999 665333 333322222
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++ ..+..-+... .| .++ .|...-++..
T Consensus 376 gl--~~~~~p~~~~-----------------------------------------~~-----~l~-----~~~~~fG~~~ 402 (509)
T KOG2504|consen 376 GL--ARLFLPFATT-----------------------------------------YV-----GLI-----VFSILFGFCV 402 (509)
T ss_pred HH--HHHHHHHhcc-----------------------------------------HH-----HHH-----HHHHHHHHHH
Confidence 11 1111110000 11 111 1111112223
Q ss_pred HHHHHHH-HHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhH-H-HHHHHHHHHHHHHHHHHH
Q 016656 184 ITISSTW-ARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP-Y-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 184 ~~~slfW-a~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~-~-lll~aa~l~~l~~~~~~~ 251 (385)
.....++ ..+.|+...|+-.+.||+.....+++.++||.+++++. ..|. . .+...+++..+++.+...
T Consensus 403 g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 403 GSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 3333333 57899999999999999999999999999999999765 3343 2 555555555555544333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.5 Score=42.94 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHH
Q 016656 179 ALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLL 236 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll 236 (385)
............+.+.+.++. +.++.-++. ..+.+|+.++|.+.|.++ ..|.. .++
T Consensus 241 g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 241 GLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 444555666777777777754 455555665 567799999999989887 45653 443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.2 Score=44.85 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=47.4
Q ss_pred HHHHHHHhhCCcchhhH--HHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHH
Q 016656 188 STWARVIDVMDSESGSR--LFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 188 lfWa~~~di~~~~eakR--~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~ 251 (385)
-.-+++.|..+++|.+| -|++.-+|.|+|.+++|.++++++ +.|-. -+-.+++-+.++......
T Consensus 137 NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 137 NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455899999998776 599999999999999999999998 55643 565666555555544333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.6 Score=44.83 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcc
Q 016656 67 FVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPK 146 (385)
Q Consensus 67 ~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (385)
+......+++-..+.+++.| |++||+++.......++..++. .....
T Consensus 301 ~~~~~~~~~vG~~~~g~l~~--r~g~~~~l~~~~~~~~~~~~~~--~~~~~----------------------------- 347 (438)
T PRK10133 301 LTGTMVCFFIGRFTGTWLIS--RFAPHKVLAAYALIAMALCLIS--AFAGG----------------------------- 347 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHH--HHcCC-----------------------------
Confidence 33444456788889999999 9999998776644433222221 11100
Q ss_pred hhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHH
Q 016656 147 AAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAG 226 (385)
Q Consensus 147 ~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~ 226 (385)
.+ .. ..+...........+...+.+.+.++. +++.-=+++.. ..+|+.++|.+.|+
T Consensus 348 ------------~~-----~~-----~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~ 403 (438)
T PRK10133 348 ------------HV-----GL-----IALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGF 403 (438)
T ss_pred ------------hH-----HH-----HHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHH
Confidence 01 11 112223445667778888889998765 45566666654 44677777777787
Q ss_pred HH-hHh
Q 016656 227 MA-FLG 231 (385)
Q Consensus 227 la-~~g 231 (385)
++ ..|
T Consensus 404 l~~~~g 409 (438)
T PRK10133 404 VSDAAG 409 (438)
T ss_pred HHHhcc
Confidence 76 445
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=5.1 Score=41.47 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=46.9
Q ss_pred chHHHHHHHHhchhHHHHHHHHHHHH--HH---HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016656 303 AILDGLRLIFSSNYLLSVSLFLWLSA--VV---SSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 377 (385)
Q Consensus 303 ~~~~~l~~i~~s~yL~~i~~~v~l~~--~~---~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~ 377 (385)
.+++.+|.+++++-+....+--++|. +. +.-.-|-..++.++... +..+...++++++...+.. |+
T Consensus 240 ~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~--------lll~g~~~~vvA~lg~ii~-g~ 310 (438)
T COG2270 240 ELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTE--------LLLIGIALSVVAALGAIIA-GF 310 (438)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH--------HHHHHHHHHHHHHHHHHHH-HH
Confidence 46778889999997665555555552 22 11222333333333333 8888888899998887775 79
Q ss_pred HHHHhCC
Q 016656 378 SFLLLGL 384 (385)
Q Consensus 378 l~rrlG~ 384 (385)
+-+|+|.
T Consensus 311 Ld~rfg~ 317 (438)
T COG2270 311 LDERFGS 317 (438)
T ss_pred HHHHhCC
Confidence 9999984
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.12 Score=40.45 Aligned_cols=72 Identities=24% Similarity=0.352 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 30 LLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PGLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 30 ~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
++++-+..|+-..+++.+.|--+-...+.|-+.- .++..+..+ +.++..|+.|+++| |++|++.+......+
T Consensus 2 l~~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laD--k~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 2 LLPLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLAD--KFGKRKVILLGSLFM 75 (77)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCccHHHHHHHHHH
Confidence 3456677888899999999999988888776544 466666655 45999999999999 999999988766543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.6 Score=39.38 Aligned_cols=138 Identities=15% Similarity=0.092 Sum_probs=80.0
Q ss_pred HHHHHHHhhhchhhhhhccCccc---hhHHHHHHHH-HHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 016656 40 ILSAYFVVLPLRDEGAISLGLSK---LPGLFVGSLI-LTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQ 115 (385)
Q Consensus 40 il~~y~ilrpv~d~l~~s~Gae~---lp~l~~~~~~-~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~ 115 (385)
...+.....+..+.+....+.+. ........+. ...+..++.|++.| |+|||+.+......+.+..++.++...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
T COG0477 14 LGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD--RYGRRKVLIIGLLLFLLGTLLLALAPN 91 (338)
T ss_pred HHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccc--cccchHHHHHHHHHHHHHHHHHHhCcc
Confidence 33555555556666655544433 2333333333 33555589999999 999996666555442222111111100
Q ss_pred hhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016656 116 SSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVID 195 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~d 195 (385)
. ..| .+. +.|.. .............++++|
T Consensus 92 -~----------------------------------------~~~-----~~~-~~~~~---~g~~~~~~~~~~~~~~~~ 121 (338)
T COG0477 92 -V----------------------------------------GLA-----LLL-ILRLL---QGLGGGGLLPVASALLSE 121 (338)
T ss_pred -c----------------------------------------hHH-----HHH-HHHHH---HHhhhHHHHHHHHHHHHH
Confidence 0 012 121 11222 223334566688999999
Q ss_pred hCCc-chhhHHHHHHHH-HHhHHHhhhHHHHHHHHh
Q 016656 196 VMDS-ESGSRLFGFIGA-GATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 196 i~~~-~eakR~fgliga-g~~lG~I~G~~l~~~la~ 229 (385)
..+. +++.+.++.... ...+|.++|+.+++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 122 WFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 678888898888 588888999877777653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=8.1 Score=40.89 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccC
Q 016656 62 KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNA 141 (385)
Q Consensus 62 ~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (385)
+..|+......+.++..|+-+.++| |+|.|++...--...++.+++=.|.-.
T Consensus 82 ~~~~i~sl~~~~~~~~gpl~s~l~~--rfg~R~v~i~G~~v~~~g~~lssF~~~-------------------------- 133 (509)
T KOG2504|consen 82 QIAWIGSLLLGVYLLAGPLVSALCN--RFGCRTVMIAGGLVAALGLLLSSFATS-------------------------- 133 (509)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHh--hcCchHHHHHHHHHHHHHHHHHHHHhh--------------------------
Confidence 3445554556677999999999999 999999986544443333333333211
Q ss_pred CCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhh
Q 016656 142 KEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS-STWARVIDVMDSESGSRLFGFIGAGATLGQLFG 220 (385)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s-lfWa~~~di~~~~eakR~fgligag~~lG~I~G 220 (385)
.|. +|+ .+.+ ..++....+. -.=..++.+| .+.|...-|+..+|.++|.++=
T Consensus 134 -----------------i~~----l~l----t~gv-i~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~ 186 (509)
T KOG2504|consen 134 -----------------LWQ----LYL----TFGV-IGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF 186 (509)
T ss_pred -----------------HHH----HHH----HHHH-HhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH
Confidence 341 121 1211 1222111111 1112344555 4566667899999999999986
Q ss_pred HHHHHHHH-hHhHH--HHHHHHHHHHHHHHHHHHHhhh
Q 016656 221 SLFAAGMA-FLGPY--LLLFAACLMELAAQSSKGIYKE 255 (385)
Q Consensus 221 ~~l~~~la-~~g~~--lll~aa~l~~l~~~~~~~l~~~ 255 (385)
|.+..++- .+|.+ .+..+++. ++...+-.++|+
T Consensus 187 ~~l~~~l~~~~G~r~~~l~~~~~~--l~~~~~~~~~rp 222 (509)
T KOG2504|consen 187 PPLLKYLLSKYGWRGALLIFGGIS--LNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHH--HHHHHHHHHcCC
Confidence 65556554 67753 45555544 233333344454
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.013 Score=62.31 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH----------------------hHhH-HH-HHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA----------------------FLGP-YL-LLFAA 239 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la----------------------~~g~-~l-ll~aa 239 (385)
-...+-.+|+.|..++++..-+.|++.+...+|-.+|=.+++.+. |+|- |+ +++.+
T Consensus 157 pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g 236 (539)
T PF03137_consen 157 PLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICG 236 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 345588899999999999999999998888888777777766542 2333 22 34444
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCccc--ccCcccchHHHHHHHHhch
Q 016656 240 CLMELAAQSSKGIYKEIPRRPEELPPLRKAD--SDPRSGADGQTAPAAKVPSPRSSTSI--VKPHLWAILDGLRLIFSSN 315 (385)
Q Consensus 240 ~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~k~~~~~~~~~l~~i~~s~ 315 (385)
+++.+.++-.... |.++|..++.. .+.++.+.+.+ .....+++.+. .++...+....++.++++|
T Consensus 237 ~~~~l~aipl~~F-------Pk~lp~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np 305 (539)
T PF03137_consen 237 ILLFLSAIPLFFF-------PKKLPGTSERQEEKESSERKEEDS----DKDSFKDPKSKKSFGKSIKDFPKALKRLLTNP 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcC-------CccCCCcccccchhhhhhcchhhh----hhhcccccccccchhhhhhhHHHHHHHHhcCh
Confidence 4443333332222 11122110000 00000000000 00000000000 0111236777888899998
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 316 YLLSVSLFLWLSA-VVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 316 yL~~i~~~v~l~~-~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
-.+.+.+-..... ..+.+.-|.- .+++.+|.-++..++++ ...+.+...++-.++.|.++||+.+
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~p-KylE~QF~~sas~A~~l---~G~v~ip~~~~G~llGG~ivkk~kl 371 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLP-KYLESQFGLSASQASLL---TGIVSIPGAALGILLGGYIVKKFKL 371 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHH---HhhhhcchhheehheEEEEEEEecC
Confidence 8776666555543 3455555553 34445565444444333 2344454555555667899998854
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=9.4 Score=38.60 Aligned_cols=39 Identities=8% Similarity=-0.054 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhH-HHHHHHH
Q 016656 201 SGSRLFGFIGAGATLGQLFGSLFAAGMAFLGP-YLLLFAA 239 (385)
Q Consensus 201 eakR~fgligag~~lG~I~G~~l~~~la~~g~-~lll~aa 239 (385)
++.|.-++.+.....+.-.|+..++++...+. .++...+
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 383 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLA 383 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 35666677777766677777788787765554 3443333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=93.46 E-value=6.2 Score=40.72 Aligned_cols=160 Identities=11% Similarity=0.095 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhcc------CccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAISL------GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~------Gae~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
++++...++...+.+.|.+...-=+....+. |.+..-++......+=++..-.-.++.+ |+|-|+.+.+...
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~--rig~k~~Lllag~ 297 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLIN--RIGAKNLLLLAGV 297 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHH--hcChHhHHHHHHH
Confidence 4555555556666677777654333333331 2222234433333333455555567778 9999999988877
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
..++-.+++++... .| |+. +..++ +..
T Consensus 298 i~~iRi~~~~~~~~-------------------------------------------~~----~i~--~~klL----H~~ 324 (412)
T PF01306_consen 298 IMAIRIIGSGFATN-------------------------------------------PW----VIS--LIKLL----HAL 324 (412)
T ss_dssp HHHHHHHHHHT--S-------------------------------------------HH----HHH--HHHHH----HHH
T ss_pred HHHHHHHHHhhhcc-------------------------------------------hH----HHH--HHHHH----HHH
Confidence 77666666665433 12 011 11222 333
Q ss_pred HH-HHHHHHHHHHHhhCCcchhhHHHHH-HHHHHhHHHhhhHHHHHHHH-hHhHH-H-HHHHHHHH
Q 016656 182 NL-ITISSTWARVIDVMDSESGSRLFGF-IGAGATLGQLFGSLFAAGMA-FLGPY-L-LLFAACLM 242 (385)
Q Consensus 182 ~~-~~~slfWa~~~di~~~~eakR~fgl-igag~~lG~I~G~~l~~~la-~~g~~-l-ll~aa~l~ 242 (385)
.. +...-.--|+++.+|++-....|.+ ...+.++|.++.+.++|.+- .+|.. . +..+.+.+
T Consensus 325 e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 325 EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 22 2222445789999999999999988 46889999999999999886 67753 3 34444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.11 E-value=12 Score=38.76 Aligned_cols=75 Identities=21% Similarity=0.152 Sum_probs=44.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 016656 305 LDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLGL 384 (385)
Q Consensus 305 ~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG~ 384 (385)
.++++.-+++|-...-..+.++|--+-.+ +.+--.+..++--+ ...+|.+.+.-.+.-+.-- +..+++.+|+|+
T Consensus 249 ~~~w~~Y~~q~vflas~alalLY~TVLsf-~~lmt~yl~~~G~s----~~~igi~R~~gav~Gl~gT-~~~p~l~~riGl 322 (432)
T PF06963_consen 249 IRGWRTYFRQPVFLASFALALLYFTVLSF-GGLMTAYLKSQGYS----PSVIGIFRGLGAVFGLLGT-WVYPWLMKRIGL 322 (432)
T ss_pred hccHHHHHhCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 45566778888888888888887654333 44444444333211 2336666655555554443 335799999997
Q ss_pred C
Q 016656 385 L 385 (385)
Q Consensus 385 ~ 385 (385)
+
T Consensus 323 v 323 (432)
T PF06963_consen 323 V 323 (432)
T ss_pred h
Confidence 4
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=93.05 E-value=8.4 Score=39.10 Aligned_cols=52 Identities=6% Similarity=0.018 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHh
Q 016656 176 LWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF 229 (385)
Q Consensus 176 iw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~ 229 (385)
+....+.+....+..+.+.+..+.+...-..+++.+. +|+.++|.+.|.++.
T Consensus 329 ~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 329 TLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHH
Confidence 3345666666688888899999755544455555543 999999999999884
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.46 E-value=9.2 Score=38.12 Aligned_cols=147 Identities=21% Similarity=0.221 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHh----hhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHH
Q 016656 27 TSALLHSSSCFFFILSAYFVV----LPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLI 99 (385)
Q Consensus 27 ~~~~l~~~l~~Flil~~y~il----rpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~ 99 (385)
.+.+-+-+...+.+...|++. -.+.+-.+.. .|-+.. .-+....+..+.+..|++|.++| ++||+-....+
T Consensus 259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D--k~G~n~~wv~~ 336 (459)
T KOG4686|consen 259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD--KYGFNLWWVAS 336 (459)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh--hhcceehhHHH
Confidence 344556666666666666654 2344444555 454333 23344557778899999999999 99997654322
Q ss_pred HHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHH
Q 016656 100 HRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVA 179 (385)
Q Consensus 100 ~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~ 179 (385)
..+..++.=..+.. . .|- .|++ ..| ..
T Consensus 337 --a~~~tl~~H~~l~F-t-----------------------------------------~ls----Py~~--m~~---lG 363 (459)
T KOG4686|consen 337 --ACILTLLGHSGLFF-T-----------------------------------------FLS----PYTS--MTF---LG 363 (459)
T ss_pred --HHHHHHHHhhhHHh-h-----------------------------------------hcc----HHHH--HHH---Hh
Confidence 22222222111111 0 010 1111 222 12
Q ss_pred HHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 180 LLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 180 ~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
+-.....-..|-.++.+.+.+|-...||++---.|+|.-+-|.+++.++
T Consensus 364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~ 412 (459)
T KOG4686|consen 364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA 412 (459)
T ss_pred hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence 2122233368999999999999999999999999999999999999886
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=92.09 E-value=4.9 Score=41.38 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=32.1
Q ss_pred cchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHH
Q 016656 199 SESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 199 ~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~ 251 (385)
++++.+.=..+...-.+|.++|..++|.+. ..++. .+.+++++..+.......
T Consensus 119 p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 119 PESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHH
Confidence 334556667777778888888888888876 33443 445555444444333333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.99 E-value=2.1 Score=44.75 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=97.6
Q ss_pred chhHHH-HHHHHHHHHHHHHHHhhhchhhhhhccCccchhHHHH-HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 26 ETSALL-HSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFV-GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 26 E~~~~l-~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp~l~~-~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
-.+++. ...+..|--++|+.....-..+++.+.|.+.-+..-. ....+.++.+.+...+.| |+|||+++.....++
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd--~~gRr~lll~s~~~m 369 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVD--RFGRRKLLLFGAAGM 369 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH--HhccHHHHHHhHHHH
Confidence 334444 4566678888999999999999988888765431111 112233455555578999 999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
.++.++++......... .. ... ...| .-++ ...+.+..++.
T Consensus 370 ~~~~~~~~~~~~~~~~~--~~----------------------------~~~-~~~~-----~~~~---~~~~~v~~f~~ 410 (513)
T KOG0254|consen 370 SICLVILAVVGVFALYY--PN----------------------------SSK-GAGW-----LAIV---FLCLFIFSFAI 410 (513)
T ss_pred HHHHHHHHHHHHHhccC--CC----------------------------ccc-chhH-----HHHH---HHHHHHHHHhc
Confidence 99999999877643210 00 000 0022 2211 22233556677
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATL 215 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~l 215 (385)
...++-|.+++++++.+=+.+..++..+...+
T Consensus 411 g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 411 GWGPVPWVIVSEIFPLRLRSKGASLAVAVNWL 442 (513)
T ss_pred ccccchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence 77789999999999999888877775554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=15 Score=38.38 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
....--+++.+.-|++......|+.....++|..+|+.++++.+
T Consensus 396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455677888889999999999999999999999988887663
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.42 Score=48.85 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=105.8
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccC---c--cch----------h------H--HHHHHHHHHHHHH
Q 016656 22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG---L--SKL----------P------G--LFVGSLILTLIAA 78 (385)
Q Consensus 22 i~~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~G---a--e~l----------p------~--l~~~~~~~~~l~~ 78 (385)
+.|+-.+..+..--+.|-..++||=.--+--+++.+-. . -.. | + +++.+ ..-+--.
T Consensus 320 lsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllits-laefPGl 398 (528)
T KOG0253|consen 320 LSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITS-LAEFPGL 398 (528)
T ss_pred cChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHH-HhhCCch
Confidence 44555666666666778888888755444445554411 0 000 1 1 12222 1113333
Q ss_pred HHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCC
Q 016656 79 PVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSA 158 (385)
Q Consensus 79 p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (385)
.+-+++.| |+||++-...++..|+++.++...--..+. ..
T Consensus 399 LIt~~ive--rlGRKkTMal~l~~f~iflfll~~c~~rn~--------------------------------------~t 438 (528)
T KOG0253|consen 399 LITGVIVE--RLGRKKTMALSLILFGIFLFLLTTCKTRNA--------------------------------------YT 438 (528)
T ss_pred hHHHHHHH--HhcchhHHHHHHHHHHHHHHHHHHhcCcch--------------------------------------hH
Confidence 45678889 999999998888777665443333211110 00
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhHH-HHHH
Q 016656 159 DWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPY-LLLF 237 (385)
Q Consensus 159 ~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~~-lll~ 237 (385)
. |+|.+ |.| ++ ...-....|+-+++|+.-|.---|..+..+-+|+|+.|.++ ..+..+.. ++.+
T Consensus 439 v-----llf~a--raf---is----g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~v 503 (528)
T KOG0253|consen 439 V-----LLFTA--RAF---IS----GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFV 503 (528)
T ss_pred H-----HHHHH--HHH---Hh----chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHH
Confidence 2 35542 554 22 23335567889999999999999999999999999999997 33344443 6666
Q ss_pred HHHHHHHHHHHHHHH
Q 016656 238 AACLMELAAQSSKGI 252 (385)
Q Consensus 238 aa~l~~l~~~~~~~l 252 (385)
...+.++++++...+
T Consensus 504 y~~~~ilagIavcff 518 (528)
T KOG0253|consen 504 YGALFILAGIAVCFF 518 (528)
T ss_pred HHHHHHHHHHHheee
Confidence 666666777775553
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.0016 Score=66.09 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhccCccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 016656 34 SSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLL 113 (385)
Q Consensus 34 ~l~~Flil~~y~ilrpv~d~l~~s~Gae~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~ 113 (385)
.+..+....+++...-..+.+..+.|.+.-...-.......++....-..+.| |+|||+++.......+++.+..+..
T Consensus 259 ~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~GRr~~~i~~~~~~~~~~~~~~~~ 336 (451)
T PF00083_consen 259 LLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLID--RFGRRKLLIIGLLLMAICSLILGII 336 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 33344445565555555555555544433311111112223444445558889 9999999887776665555544410
Q ss_pred HhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016656 114 WQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARV 193 (385)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~ 193 (385)
...... . ++ .. .+ +... ...++...++....++.|.++
T Consensus 337 ~~~~~~----~------------------~~---------~~---~~----~~i~----~~~l~~~~~~~g~~~~~~~~~ 374 (451)
T PF00083_consen 337 FFLGVS----S------------------SS---------WW---SI----LSIV----FLALFFAFFSLGWGPLPWIYT 374 (451)
T ss_pred cccccc----c------------------cc---------cc---cc----ccce----eeeeccccccccccccccccc
Confidence 111100 0 00 00 01 0100 111122344444557899999
Q ss_pred HhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 194 IDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 194 ~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
+|++|++-|.+..|+..+.+.+|.++++.+...+.
T Consensus 375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~ 409 (451)
T PF00083_consen 375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF 409 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999887766554
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.00 E-value=3.3 Score=44.16 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCC
Q 016656 75 LIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGST 154 (385)
Q Consensus 75 ~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (385)
+++-+..+||.+ ++|+-+++++.+.++.+-|+.+..+..
T Consensus 420 I~~~ffs~klI~--kiGHv~v~~lgLa~~~~Rf~~~S~L~n--------------------------------------- 458 (618)
T KOG3762|consen 420 ILFYFFSFKLIE--KIGHVNVMYLGLACNVGRFLYYSYLQN--------------------------------------- 458 (618)
T ss_pred HHHHHHHHHHHH--HhcccceeeehhhHHHHHHHHHHHhcC---------------------------------------
Confidence 666677789999 999999999999998777776666433
Q ss_pred CCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHH----HHHHhhCCcchhhHHHHHH-----HHHHhHHHhhhHHHHH
Q 016656 155 ANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTW----ARVIDVMDSESGSRLFGFI-----GAGATLGQLFGSLFAA 225 (385)
Q Consensus 155 ~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfW----a~~~di~~~~eakR~fgli-----gag~~lG~I~G~~l~~ 225 (385)
.|+ -+ - .++++.++..++| +|+.++.|++-....=+++ |.|-++|.++|+.+..
T Consensus 459 ----~W~-----vL----P----ieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 459 ----PWM-----VL----P----IEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred ----chh-----ee----e----HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 353 11 1 2677777777777 5888999888766654443 4566666666655544
Q ss_pred H
Q 016656 226 G 226 (385)
Q Consensus 226 ~ 226 (385)
.
T Consensus 522 ~ 522 (618)
T KOG3762|consen 522 R 522 (618)
T ss_pred e
Confidence 3
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.81 E-value=6.2 Score=41.34 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccchh-HHHHHH-HHHHHHHHHHHHHhhCCCCCCchhHHHHHH---HH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLP-GLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALVLIH---RF 102 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~lp-~l~~~~-~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~---~~ 102 (385)
.++...+.-|+-..+++++.--.|++.-+ .|-+.-. +.+.+. +.++.++..+.|.++| +..+| .+.... .+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD--~l~~~-~ls~t~~rkif 335 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSD--RLTFR-ILSETTVRKIF 335 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHH--HHhhc-cCchHhHHHHH
Confidence 45666667899999999999988888877 4554442 333332 4567899999999999 77653 111100 00
Q ss_pred HHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHH
Q 016656 103 FSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLN 182 (385)
Q Consensus 103 f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~ 182 (385)
-.+.+..-+..+-.. +|.++ +. .| .- .+++.....++
T Consensus 336 n~i~~~~~ai~l~~l--~~~~~-------------------~~-------------~~-----~a----~~~l~~~~~~~ 372 (466)
T KOG2532|consen 336 NTIAFGGPAVFLLVL--AFTSD-------------------EH-------------RL-----LA----VILLTIAIGLS 372 (466)
T ss_pred HhHHHHHHHHHHHee--eecCC-------------------Cc-------------ch-----HH----HHHHHHHHHHc
Confidence 111122222221111 11000 00 12 11 24544444444
Q ss_pred HHHHHHHHHHHHhhC-CcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH---hHH--HHHHHHHHHHHHHH
Q 016656 183 LITISSTWARVIDVM-DSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL---GPY--LLLFAACLMELAAQ 247 (385)
Q Consensus 183 ~~~~slfWa~~~di~-~~~eakR~fgligag~~lG~I~G~~l~~~la~~---g~~--lll~aa~l~~l~~~ 247 (385)
.++.+=| +.|-.- .++-+.-..|+++..+++.++++|.+++.+..- +-| .+++.+++..++..
T Consensus 373 g~~~~Gf--~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 373 GFNISGF--YKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI 441 (466)
T ss_pred ccchhhh--HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence 4444433 233333 677888889999999999999999999988732 223 56666655544443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=43 Score=35.40 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHH-HHhHHHhhhHHHHHHHH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGA-GATLGQLFGSLFAAGMA 228 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgliga-g~~lG~I~G~~l~~~la 228 (385)
...+-=+++++.-|++-+.+..|.--. ++.+|..+++.++++.+
T Consensus 394 ~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 394 IDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334777889999999999999999876 44688888887777664
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.16 E-value=29 Score=36.07 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=69.1
Q ss_pred HHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccc
Q 016656 82 TLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWG 161 (385)
Q Consensus 82 ~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 161 (385)
+.+.+ ++|||...........++++.+++...... .|
T Consensus 371 ~~~~~--~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~- 407 (521)
T KOG0255|consen 371 GLLLP--EFGRRPPLFLSLFLAGIGLLLFGWLPDDLG----------------------------------------GW- 407 (521)
T ss_pred HHHHH--HhCcHHHHHHHHHHHHHHHHHHHHhhccch----------------------------------------hH-
Confidence 56767 999999988888877777777776544210 01
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH
Q 016656 162 DHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL 230 (385)
Q Consensus 162 ~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~ 230 (385)
+.. +..+...............+.++.+++.-+....+.++..+.+|.+++|.+.......
T Consensus 408 ----~~~----~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~ 468 (521)
T KOG0255|consen 408 ----LHW----ILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM 468 (521)
T ss_pred ----HHH----HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 2222223333334445588999999999999999999999999999999997666543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=86.31 E-value=0.028 Score=56.96 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhc
Q 016656 70 SLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAV 149 (385)
Q Consensus 70 ~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (385)
.+..+++-+.+.|.++| |+|||+.+.+......+.-++.++......
T Consensus 55 ~~~g~~~G~~~~g~~~d--~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~------------------------------- 101 (451)
T PF00083_consen 55 FFIGAIVGALIFGFLAD--RYGRKPALIISALLMIIGSILIAFAPSYNN------------------------------- 101 (451)
T ss_pred HHhhhcccccccccccc--cccccccccccccccccccccccccccccc-------------------------------
Confidence 34455888899999999 999999998877776555554444321000
Q ss_pred ccCCCCCCCccccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 150 DQGSTANSADWGDHGWFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 150 ~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
.| .+. ++|.+ .++ ......+...++.|+.+++.|.+.-.+...+..+|.++|..++..+.
T Consensus 102 ---------~~-----~~~-~~R~~----~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 162 (451)
T PF00083_consen 102 ---------FW-----MLL-IGRFL----IGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS 162 (451)
T ss_pred ---------cc-----ccc-ccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12 121 22444 343 33345588899999999999999999999999999999988765554
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=86.29 E-value=24 Score=31.40 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHH----HHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHH
Q 016656 179 ALLNLITISSTW----ARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA 224 (385)
Q Consensus 179 ~~~~~~~~slfW----a~~~di~~~~eakR~fgligag~~lG~I~G~~l~ 224 (385)
+.+..+..+.+| .++.+..+.++..|..++.-+-.+.+.++|+.+.
T Consensus 96 s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 96 SALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777 4688889999999999999999999999987763
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.12 E-value=59 Score=33.33 Aligned_cols=147 Identities=21% Similarity=0.134 Sum_probs=87.1
Q ss_pred HHHhhhchhhhhhccCccch-hHHHHHHHHHH-HHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 016656 44 YFVVLPLRDEGAISLGLSKL-PGLFVGSLILT-LIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGY 121 (385)
Q Consensus 44 y~ilrpv~d~l~~s~Gae~l-p~l~~~~~~~~-~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~ 121 (385)
..-+-|+.|++--+.|.+.- -++.+..-.++ -+++|.-.+|.. |+|-+|.+...+. ++..+.++.....
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar--~~g~er~l~~~Ll-----li~~G~~iR~~~~-- 98 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLAR--RFGEERSLFLALL-----LIAAGILIRSLGG-- 98 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhhHHHHHHHHH-----HHHHHHHHHhccc--
Confidence 44556666666666666554 35555443334 789999999988 9999998765443 3555555553210
Q ss_pred ccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhCCcc
Q 016656 122 LSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI-TISSTWARVIDVMDSE 200 (385)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~-~~slfWa~~~di~~~~ 200 (385)
.+. +|.| .++ .+.++. .-.+.=+++-.-| ++
T Consensus 99 -------------------------------------~~~----L~~g--t~l----~G~gIav~nVLLPslIK~~F-pk 130 (395)
T COG2807 99 -------------------------------------LPL----LFLG--TLL----AGAGIAVINVLLPSLIKRDF-PK 130 (395)
T ss_pred -------------------------------------HHH----HHHH--HHH----HHhhHHHHHHhhhHHHHhhc-cc
Confidence 110 2222 111 111111 1124445566666 56
Q ss_pred hhhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH--HHHHHHHHHHHHHH
Q 016656 201 SGSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY--LLLFAACLMELAAQ 247 (385)
Q Consensus 201 eakR~fgligag~~lG~I~G~~l~~~la~-~g~~--lll~aa~l~~l~~~ 247 (385)
+.....|+..+..++|+.+|+.++-.++. .+.| .+...+++.+++..
T Consensus 131 ~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~ 180 (395)
T COG2807 131 RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALL 180 (395)
T ss_pred chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 66778889999999999999988888873 3333 56666655554444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.51 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.47 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.28 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.02 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.53 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.14 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.89 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 97.86 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.78 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 97.76 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 96.59 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 94.75 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-11 Score=119.66 Aligned_cols=271 Identities=10% Similarity=0.006 Sum_probs=170.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 24 ~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
++....++.+.+.+|+..+.+++.-|+.+.+..+.|.+.. -++.........+..|+.|+++| |+|||+++.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHH
Confidence 3344566667777888888888999988887777766444 34444445556889999999999 9999999999888
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++..++++....... .| .+. +.|.+ ..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~----------------------------------------~~-----~l~-~~~~l---~G~~ 130 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMN----------------------------------------YT-----LFL-VGLFI---IAAG 130 (438)
T ss_dssp HHHHHHHHHHHHHHTTC----------------------------------------HH-----HHH-HHHHH---HHHH
T ss_pred HHHHHHHHHHhcccccc----------------------------------------HH-----HHH-HHHHH---HHhh
Confidence 88777777644321110 22 222 12332 2333
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hH-hH------------------------H--
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FL-GP------------------------Y-- 233 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~-g~------------------------~-- 233 (385)
........-++++|.++++++.+.+++..++.++|.++|+.+++.+. .. +. +
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 210 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT 210 (438)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH
Confidence 44555577889999999999999999999999999999999999886 32 21 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHh
Q 016656 234 LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFS 313 (385)
Q Consensus 234 lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~ 313 (385)
++++.+++..+....... .. .+| .++ + .+ +. +++ .+..+.++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~--~~---~p~-----~~~--~--~~--~~---------------~~~---~~~~~~~~~~~~ 256 (438)
T 3o7q_A 211 PYMIIVAIVLLVALLIML--TK---FPA-----LQS--D--NH--SD---------------AKQ---GSFSASLSRLAR 256 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---CCC-----CTT--T--CC--CC---------------SST---TSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH--Hc---CCc-----ccc--c--cc--cc---------------ccc---cchhhhHHHHHh
Confidence 443443333222222111 11 111 000 0 00 00 011 245677888999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 314 SNYLLSVSLFLWLSAVVSSFFYFQKVTV-IAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 314 s~yL~~i~~~v~l~~~~~~l~~f~~~~~-v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
+|.+...++..+++.............+ .++.+..+++. .|...+..++..++.+.+ .+++.+|+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~-~g~l~~r~~ 323 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF---AANYLTGTMVCFFIGRFT-GTWLISRFA 323 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH---HHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 9999888888777666544333333344 44544433444 445555566666665554 578888876
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-11 Score=120.43 Aligned_cols=282 Identities=8% Similarity=-0.088 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcc-CccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISL-GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~-Gae~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
.+...++..|+.....+..-+..+.+..+. +.+++.++.........+..|+.|+++| |+|||+++.+....+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHH--hcCchHHHHHHHHHHHHHH
Confidence 445555556666666666666666555544 3334445554555566889999999999 9999999998888887777
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++...... + .| ++++ .|++ .+........
T Consensus 107 ~~~~~~~~~~~-----~----------------------------------~~----~l~~--~~~l---~G~~~~~~~~ 138 (451)
T 1pw4_A 107 LFMGFVPWATS-----S----------------------------------IA----VMFV--LLFL---CGWFQGMGWP 138 (451)
T ss_dssp HHHHHCHHHHS-----S----------------------------------SS----HHHH--HHHH---HHHHHHHTHH
T ss_pred HHHHhhhhccc-----c----------------------------------HH----HHHH--HHHH---HHHHhhhccc
Confidence 77665321110 0 23 1222 1332 2333455666
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh-HH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG-PY-LLLFAACLMELAAQSSKGIYKEIPRRPEELP 264 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g-~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~ 264 (385)
...++++|.++++|+.|.+|+..++.++|.++||.+++++. ..| .. .+++.+++..+...+.....+..++. .
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~- 214 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS---C- 214 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT---T-
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh---c-
Confidence 88899999999999999999999999999999999998865 556 43 55555544444444333322211110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016656 265 PLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG-LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIA 343 (385)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~ 343 (385)
....+.+.+++.. .+.+ ++++.+.+..+. .+.++++|.+..+++..++..............+..
T Consensus 215 ---~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 215 ---GLPPIEEYKNDYP---------DDYN--EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280 (451)
T ss_dssp ---CCCSCTTTCCC------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred ---CCCChhhhccccc---------ccch--hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000 000001122222 467788999888888777776655444433344444
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 016656 344 MTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 382 (385)
Q Consensus 344 ~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrl 382 (385)
+.+..+++. .|.+.+..++..++...+ .+++.+|+
T Consensus 281 ~~~g~~~~~---~~~~~~~~~~~~~~~~~~-~g~l~~~~ 315 (451)
T 1pw4_A 281 EVKHFALDK---SSWAYFLYEYAGIPGTLL-CGWMSDKV 315 (451)
T ss_dssp TBSCCCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HhcCCCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 434333333 566667777777777665 47888887
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=116.42 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~l 108 (385)
+...+..|+...++++.-|..+.+..+.|.+.- .++.........+..|+.|+++| |+|||+++.+.....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD--RVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT--TSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHHHHH
Confidence 445666788888888999998887777665443 34444445566899999999999 99999999988888777776
Q ss_pred HHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 016656 109 VFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188 (385)
Q Consensus 109 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~sl 188 (385)
++++... .| ++++ .|.+ ...........
T Consensus 81 ~~~~~~~-------------------------------------------~~----~l~~--~~~l---~g~~~~~~~~~ 108 (375)
T 2gfp_A 81 VAVTTSS-------------------------------------------LT----VLIA--ASAM---QGMGTGVGGVM 108 (375)
T ss_dssp HHHHHHH-------------------------------------------HH----HHHH--HHHH---HHHHHHHHHHH
T ss_pred HHHHhcc-------------------------------------------HH----HHHH--HHHH---HHHHHHhhhhh
Confidence 6665322 12 1221 1332 23334445667
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
..+++.|.++++|+.|.+++...+.++|.++||.+++++. ..+.. .+.+.+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999998876 34543 555554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-08 Score=95.73 Aligned_cols=168 Identities=10% Similarity=0.030 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc------cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCC-CCchhHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS------LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVL 98 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s------~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r-~~r~~vl~~ 98 (385)
+.++...+..|+...+++...+.......+ .|.+.. .++.........+..|+.|+++| | +|||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~~g~r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD--RIIGARPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 345566667777888887777666665554 455433 34444445566889999999999 9 899999988
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHH
Q 016656 99 IHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWV 178 (385)
Q Consensus 99 ~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~ 178 (385)
....+++..+++++. . + .| ++++ .|++ .
T Consensus 91 ~~~~~~~~~~~~~~~----~-----~----------------------------------~~----~~~~--~~~l---~ 118 (491)
T 4aps_A 91 GGVLIMLGHIVLALP----F-----G----------------------------------AS----ALFG--SIIL---I 118 (491)
T ss_dssp HHHHHHHHHHHHHSC----C-----S----------------------------------TT----HHHH--HHHH---H
T ss_pred HHHHHHHHHHHHHHh----h-----h----------------------------------HH----HHHH--HHHH---H
Confidence 877766655544331 0 0 22 1222 2333 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcch--hhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSES--GSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAACLMELAAQSS 249 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~e--akR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~l~~l~~~~~ 249 (385)
.+..........++++|.+++++ +.+.+++.+.+.++|.++||.+++.+.. .|.+ .+.+.+++..++....
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33345566788999999999999 5557888999999999999999999874 5553 5655555554444443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.8e-08 Score=96.17 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+.+.......|+...+++...|..+....+ .|.+. .-.+.......+.+..|+.|+++| |+||||++.+....++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD--r~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT--TSTTCCHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHH
Confidence 456666677788888888888888877655 55433 334444445566899999999999 9999999887766554
Q ss_pred H
Q 016656 105 V 105 (385)
Q Consensus 105 ~ 105 (385)
+
T Consensus 85 ~ 85 (417)
T 2cfq_A 85 V 85 (417)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=88.00 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cC------ccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCC-CchhHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LG------LSK--LPGLFVGSLILTLIAAPVSTLIFSLPNL-SKAKALVL 98 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~G------ae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~-~r~~vl~~ 98 (385)
.+....+..|+...+++...+.......+ .| .+. ..++.......+.+..++.|+++| |+ |||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~~g~r~~~~~ 90 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD--RFFGKYNTILW 90 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT--TSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHH
Confidence 45556677788888888777777766554 56 332 234444445566888999999999 99 99999888
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHH
Q 016656 99 IHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWV 178 (385)
Q Consensus 99 ~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~ 178 (385)
....+++..+++++... + .| ++++ .|++ .
T Consensus 91 ~~~~~~~~~~~~~~~~~-~-----------------------------------------~~----~~~~--~~~l---~ 119 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEH-S-----------------------------------------VQ----GFYT--GLFL---I 119 (524)
T ss_dssp HHHHHHHHHHHHHHTSS-C-----------------------------------------HH----HHHH--HHHH---H
T ss_pred HHHHHHHHHHHHHHhcc-c-----------------------------------------HH----HHHH--HHHH---H
Confidence 77776666555444210 0 12 1222 1232 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhh---HHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSESGS---RLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~eak---R~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
.+..........++++|.++++++. ..|++...+.++|.++||.+++.+. ..|.. .+.+.+++.+++...
T Consensus 120 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 120 ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3334445668889999999999884 4577799999999999999988886 34553 555555554444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=78.93 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCC--CchhHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNL--SKAKALVLIHRF 102 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~--~r~~vl~~~~~~ 102 (385)
+.++...+..++...+++.....-+.+..+ .|.+.. ..+........++..++.++++| |+ +||+.+.+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhHHHHHHH
Confidence 456666677777777877777777777766 555433 23343444566888899999999 99 998887655444
Q ss_pred HH-HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 103 FS-VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 103 f~-~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+ +.++++.+ .. + ...| ... +........
T Consensus 330 ~~~~~~~~~~~----~~-----~--------------------------------~~~~-----~~~----~~~~~~g~~ 359 (451)
T 1pw4_A 330 LVTIATIVYWM----NP-----A--------------------------------GNPT-----VDM----ICMIVIGFL 359 (451)
T ss_dssp HHHHHHHHTTS----CC-----T--------------------------------TCHH-----HHH----HHHHHHHHH
T ss_pred HHHHHHHHHHH----hc-----c--------------------------------cCHH-----HHH----HHHHHHHHH
Confidence 32 22221111 00 0 0012 211 111112222
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhH-HHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHh
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIY 253 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~l-G~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~ 253 (385)
........+.++.|.++++++.+.+|+.+...++ |..+||.+++.+. ..|.. .+++.+++.+++..+...+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557789999999999999999999999999 9999999999887 44543 55555555555555555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-05 Score=77.34 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHH-HHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFI-GAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgli-gag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
....|++++|.++++.+.+.+|+. +.+.++|.++||.+++.+. ..|.. .+.+.+++..+++..
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999994 8889999999999999876 44543 555555554445444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0064 Score=60.13 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=81.2
Q ss_pred HHHHHHH-HHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCc
Q 016656 67 FVGSLIL-TLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDP 145 (385)
Q Consensus 67 ~~~~~~~-~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (385)
..+++.+ +++-+++.|+++| |+|||+++.+....+.+.-++.++........ .+
T Consensus 60 ~~s~~~~G~~iG~~~~G~laD--r~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~-----------------~~------ 114 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSN--RFGRRDSLKIAAVLFFISGVGSAWPELGFTSI-----------------NP------ 114 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCS-----------------SS------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------cc------
Confidence 3344444 4777899999999 99999999998888766655555422110000 00
Q ss_pred chhcccCCCCCCCcccccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHH
Q 016656 146 KAAVDQGSTANSADWGDHG-WFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLF 223 (385)
Q Consensus 146 ~~~~~~~~~~~~~~w~~~~-w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l 223 (385)
..........+ |.+. +.|.+ .++ ..........+++|..+++++.+.-++...+..+|.++++.+
T Consensus 115 --------~~~~~~~~a~~~~~l~-~~R~l----~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~ 181 (491)
T 4gc0_A 115 --------DNTVPVYLAGYVPEFV-IYRII----GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181 (491)
T ss_dssp --------SSSCCGGGGGCHHHHH-HHHHH----HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhHHHHHHhhhHHHHH-HHHHH----HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhc
Confidence 00000001111 1222 34654 444 445566889999999999999999999999999999999988
Q ss_pred HHHHH
Q 016656 224 AAGMA 228 (385)
Q Consensus 224 ~~~la 228 (385)
+..+.
T Consensus 182 ~~~~~ 186 (491)
T 4gc0_A 182 NYFIA 186 (491)
T ss_dssp HHHHH
T ss_pred chhhc
Confidence 77765
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00036 Score=67.97 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhh-hhc-cCccch-h-HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEG-AIS-LGLSKL-P-GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l-~~s-~Gae~l-p-~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
+++....+..|+....+.......+.+ ..+ .|.+.. . .+.......+.+..++.++++| |++||+++.+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS--RFAPHKVLAAYALIA 335 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHH
Confidence 345556666677677676666666776 545 365433 3 3333444566888999999999 999999987766655
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++.++++.+.. . .| ... .+ ........
T Consensus 336 ~~~~~~~~~~~--~-----------------------------------------~~-----~~~----~~-~~~g~~~~ 362 (438)
T 3o7q_A 336 MALCLISAFAG--G-----------------------------------------HV-----GLI----AL-TLCSAFMS 362 (438)
T ss_dssp HHHHHHHHHCC--H-----------------------------------------HH-----HHH----HH-HHHHHHHT
T ss_pred HHHHHHHHHcC--C-----------------------------------------cH-----HHH----HH-HHHHHHHH
Confidence 44443332210 0 11 111 11 11233334
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh-HH-HHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG-PY-LLLFAACL 241 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g-~~-lll~aa~l 241 (385)
......++++.|.++++ +++..++.. .+.+|..+||.+.+.+. ..| .. .+.+.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 363 IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45568899999998855 677777666 56799999999999887 456 43 44444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00094 Score=66.21 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hH-HHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PG-LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~-l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~l 108 (385)
.......|....+++.+....+.+....|.+.. .. .......+.++..++.+.++| |+|||+.+.......++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d--r~Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD--KFGRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH--hhcCcchhccchHHHHHHHH
Confidence 334444555556666655555555555444333 22 222334556788888999999 99999999887777766666
Q ss_pred HHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 016656 109 VFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188 (385)
Q Consensus 109 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~sl 188 (385)
.++........ .| ... ...++....++.....+
T Consensus 358 ~l~~~~~~~~~---------------------------------------~~-----~~~---~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 358 SLGTAFYTQAP---------------------------------------GI-----VAL---LSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHTTCC---------------------------------------HH-----HHH---HHHHHHHHHHHTTTTHH
T ss_pred HHHHHHhcccc---------------------------------------hH-----HHH---HHHHHHHHHHHhHHHHH
Confidence 65554442210 11 111 01222233344444468
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
.|.+++|++|++-|....|+..+.+.+|.++++.+...+
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998776655
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.1e-05 Score=74.53 Aligned_cols=63 Identities=3% Similarity=-0.048 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhH-HHHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGP-YLLLFAACLMELAAQS 248 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~-~lll~aa~l~~l~~~~ 248 (385)
....+.+++|.++++++.+..|+.+...++|..+|+.+++.+...+. ..+.+.+++..++...
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999877664443 3333333333333333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0024 Score=61.01 Aligned_cols=151 Identities=11% Similarity=-0.002 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+++....+..++...++......-+.+..+ .|.+.. ..+.......+++..++.+++.| |+++ +..........
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~--r~~~-~~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK--RFST-LMWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTT--HHHH-HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHH
Confidence 345566666677777777776666666555 444322 23333444556788889999999 8876 22211111011
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
.....+........ + .| .+. +..+........
T Consensus 276 ~~~~~~~~~~~~~~-----~----------------------------------~~-----~~~----~~~~l~g~~~~~ 307 (375)
T 2gfp_A 276 AGLLMWIPDWFGVM-----N----------------------------------VW-----TLL----VPAALFFFGAGM 307 (375)
T ss_dssp TSSSSSHHHHHHHH-----H----------------------------------HH-----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccc-----c----------------------------------HH-----HHH----HHHHHHHHHHHH
Confidence 11111111110000 0 12 211 111111222233
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL 230 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~ 230 (385)
.....++++.|.++ +++.+.+|+.+...++|..+||.+.+.+...
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44577889999997 8999999999999999999999998887643
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.025 Score=56.47 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
...........+.+++|..+++++.+.+|+.+...++|.++||.+.+.+.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445566788999999999999999999999999999999999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 385 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.37 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.02 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.21 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.13 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.1e-10 Score=109.58 Aligned_cols=252 Identities=9% Similarity=-0.046 Sum_probs=140.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhcccc
Q 016656 61 SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSN 140 (385)
Q Consensus 61 e~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (385)
+++.++.........+..++.|+++| |+|||+++.+.....++..++++++.....
T Consensus 59 ~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 114 (447)
T d1pw4a_ 59 GDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVMLFMGFVPWATS---------------------- 114 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCHHHHS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHHHHhhccccchhhh----------------------
Confidence 44445444445555888999999999 999999999888888777777766543221
Q ss_pred CCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhh
Q 016656 141 AKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFG 220 (385)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G 220 (385)
..| ++++ .|.+ .............++++|.++++|+.+.+|+.+.+.++|.++|
T Consensus 115 -----------------~~~----~~~~--~~~~---~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~ 168 (447)
T d1pw4a_ 115 -----------------SIA----VMFV--LLFL---CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 168 (447)
T ss_dssp -----------------SSS----HHHH--HHHH---HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSH
T ss_pred -----------------hHH----HHHH--HHHH---HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhh
Confidence 022 1222 1232 2333344556778899999999999999999999999999999
Q ss_pred HHHHHHHH-hHhH-H-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 016656 221 SLFAAGMA-FLGP-Y-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIV 297 (385)
Q Consensus 221 ~~l~~~la-~~g~-~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (385)
+.+++.+. ..+. + .+.+.+++..+.......+.+..++. . . .+...+.+++..+ +..++.
T Consensus 169 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~----~~~~~~~~~~~~~----------~~~~~~ 231 (447)
T d1pw4a_ 169 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS-C--G----LPPIEEYKNDYPD----------DYNEKA 231 (447)
T ss_dssp HHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT-T--C----CCSCTTTCCC-------------------
T ss_pred hhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhh-c--c----cchhhhhhhhccc----------chhhcc
Confidence 99888765 3332 2 44444433333333333332221110 0 0 0000000000000 000011
Q ss_pred cCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 016656 298 KPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGT 377 (385)
Q Consensus 298 k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~ 377 (385)
++.........+.++++|.+..++...+++.............+..+.+..+.+. .+......++..++...+ .++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~g~ 307 (447)
T d1pw4a_ 232 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK---SSWAYFLYEYAGIPGTLL-CGW 307 (447)
T ss_dssp ----CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH---HHHHHHHHHHHHHHHHHH-HHH
T ss_pred ccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch---hhhhhhcchhhhhhhhhh-hhh
Confidence 1111233455678889999988888777766555444433334444444433444 333444444444444444 467
Q ss_pred HHHHhC
Q 016656 378 SFLLLG 383 (385)
Q Consensus 378 l~rrlG 383 (385)
+.+|++
T Consensus 308 ~~~~~~ 313 (447)
T d1pw4a_ 308 MSDKVF 313 (447)
T ss_dssp HHHHTS
T ss_pred hhhhcc
Confidence 766654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.3e-08 Score=93.99 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 27 TSALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 27 ~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
.+.++...+.+|+..+++++.-|..+....+ .|.+.. -++.........+..|+.|+++| |+||||++.+.....
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D--r~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITGM 83 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH--HHTTCTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHHH
Confidence 3456666777888899999999988876555 565443 33343445556889999999999 999999998887777
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHH-HHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFL-WVALLN 182 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyi-w~~~~~ 182 (385)
++..+++++....... .+ +.+.. +..-. ......
T Consensus 84 ~~~~~~~~~~~~~~~~---------------------------------------~~----~~~~~--~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLL---------------------------------------QY----NILVG--SIVGGIYLGFCF 118 (417)
T ss_dssp HHTHHHHHHHTHHHHH---------------------------------------HT----TCHHH--HHHTTTTGGGGG
T ss_pred HHHHHHHHHhhhhhhH---------------------------------------HH----HHHHH--HHHhhhcccccc
Confidence 6666666554332110 00 00000 00000 000000
Q ss_pred HHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhH-HHHHHHH-HHHHHHHHHHHHHhhhcCCCC
Q 016656 183 LITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGP-YLLLFAA-CLMELAAQSSKGIYKEIPRRP 260 (385)
Q Consensus 183 ~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~-~lll~aa-~l~~l~~~~~~~l~~~~~~~~ 260 (385)
............| ..++..+.++....+.+.|.++|+.+++.+...+. ......+ ....+.... ... . ...+
T Consensus 119 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~ 192 (417)
T d1pv7a_ 119 NAGAPAVEAFIEK--VSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL-FFA--K-TDAP 192 (417)
T ss_dssp TTHHHHHHHHHHH--HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSS--C-CCSC
T ss_pred cchhhcccccccc--hhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHH-HHH--h-cccc
Confidence 0111112111211 12345567888899999999999999998886654 3333333 222222222 111 1 1000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016656 261 EELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVT 340 (385)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~ 340 (385)
+ ..+ ++ +. ++++.+.......+...+.+....+....................
T Consensus 193 ~-----~~~-----~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T d1pv7a_ 193 S-----SAT-----VA--NA---------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp S-----SSC-----SS--HH---------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-----chh-----hh--hh---------------hhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccc
Confidence 0 000 00 00 000001122333445556666665555555555444444444433
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 341 VIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 341 ~v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
.......+...-....+......++...+... ..+++.+|.|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~ 287 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIG 287 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHC
T ss_pred cccccccccccchhhhcccccccccccccchh-hhhhhhcccc
Confidence 34334444444445556666666666555544 4688888876
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=1.8e-05 Score=72.29 Aligned_cols=129 Identities=13% Similarity=0.020 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchh
Q 016656 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAA 148 (385)
Q Consensus 69 ~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (385)
.......+..++.+++.| |.+|++++.+.....++..+++.+...
T Consensus 267 ~~~~~~~~~~~~~~~l~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 311 (417)
T d1pv7a_ 267 MGELLNASIMFFAPLIIN--RIGGKNALLLAGTIMSVRIIGSSFATS--------------------------------- 311 (417)
T ss_dssp HHHHHHHHHHTTHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTCCC---------------------------------
T ss_pred ccccccccchhhhhhhhc--ccccccchhhhHHHHHHhhhccccccc---------------------------------
Confidence 444556888889999999 999999987766665444443332100
Q ss_pred cccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchhhHHHHHH-HHHHhHHHhhhHHHHHHH
Q 016656 149 VDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFI-GAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 149 ~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~slfWa~~~di~~~~eakR~fgli-gag~~lG~I~G~~l~~~l 227 (385)
.| ... +..+.............++++.|.++++++.+.+|+. +.+.++|..+||.++|++
T Consensus 312 ----------~~-----~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l 372 (417)
T d1pv7a_ 312 ----------AL-----EVV----ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp ----------HH-----HHH----HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred ----------cc-----hhh----HHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 111 1212223333445668889999999999999999985 567789999999999998
Q ss_pred H-hHhHH-HHHHHHHHHHHHHHHHHH
Q 016656 228 A-FLGPY-LLLFAACLMELAAQSSKG 251 (385)
Q Consensus 228 a-~~g~~-lll~aa~l~~l~~~~~~~ 251 (385)
. ..|.. .+++.+++..+.......
T Consensus 373 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 373 YESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 7 56764 555544444444444333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=2.7e-05 Score=73.17 Aligned_cols=175 Identities=9% Similarity=-0.039 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSV 105 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~ 105 (385)
.++......++....++......+....+ .|.+. ...........+++..++.|+++| |++|++.......+..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 250 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh--hccccccccccchhHHH
Confidence 34444445555555555555555555544 33332 233343445566888899999999 99887655443333221
Q ss_pred HHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 016656 106 SLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 185 (385)
Q Consensus 106 ~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~ 185 (385)
. ..+........ .+ ..| ... +.+..........
T Consensus 328 ~--~~~~~~~~~~~-----------------------~~-------------~~~-----~~~----~~~~~~g~~~~~~ 360 (447)
T d1pw4a_ 328 V--TIATIVYWMNP-----------------------AG-------------NPT-----VDM----ICMIVIGFLIYGP 360 (447)
T ss_dssp H--HHHHHHTTSCC-----------------------TT-------------CHH-----HHH----HHHHHHHHHHTHH
T ss_pred H--HHHHHHHHhcc-----------------------cc-------------cHH-----HHH----HHHHHHHHHHHHH
Confidence 1 11221111100 00 012 221 2222222223345
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhH-HHhhhHHHHHHHH-hHhH-HHHHHHHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLFAAGMA-FLGP-YLLLFAACLMELAAQSSKGI 252 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~l-G~I~G~~l~~~la-~~g~-~lll~aa~l~~l~~~~~~~l 252 (385)
....+.+++|.++++++.+..|+++..+++ |.++||.+++++. ..|. ..+.+.+++..++..+...+
T Consensus 361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999988877 5677899988876 4454 23333333333343433333
|